Citrus Sinensis ID: 018037
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H1Y0 | 393 | Pyruvate dehydrogenase E1 | yes | no | 0.983 | 0.905 | 0.822 | 0.0 | |
| P52901 | 389 | Pyruvate dehydrogenase E1 | no | no | 0.977 | 0.910 | 0.838 | 0.0 | |
| P52902 | 397 | Pyruvate dehydrogenase E1 | N/A | no | 0.941 | 0.858 | 0.865 | 0.0 | |
| Q6Z5N4 | 390 | Pyruvate dehydrogenase E1 | yes | no | 0.933 | 0.866 | 0.837 | 1e-175 | |
| P52903 | 391 | Pyruvate dehydrogenase E1 | N/A | no | 0.972 | 0.900 | 0.807 | 1e-174 | |
| Q654V6 | 398 | Pyruvate dehydrogenase E1 | no | no | 0.917 | 0.834 | 0.786 | 1e-163 | |
| Q54C70 | 377 | Pyruvate dehydrogenase E1 | yes | no | 0.853 | 0.819 | 0.605 | 1e-109 | |
| P52899 | 397 | Probable pyruvate dehydro | yes | no | 0.950 | 0.866 | 0.544 | 1e-103 | |
| Q10489 | 409 | Pyruvate dehydrogenase E1 | yes | no | 0.886 | 0.784 | 0.553 | 1e-101 | |
| P16387 | 420 | Pyruvate dehydrogenase E1 | yes | no | 0.878 | 0.757 | 0.546 | 1e-101 |
| >sp|Q8H1Y0|ODPA2_ARATH Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/361 (82%), Positives = 333/361 (92%), Gaps = 5/361 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF--LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVE 58
MALS+LSS S+ LKP + + R +STD++P+TIET+VPFTSH CE+PSRSVE
Sbjct: 1 MALSRLSSRSN---TFLKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVE 57
Query: 59 TTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
T+ +E+L+FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEA+A+GMEA ITKKD+II
Sbjct: 58 TSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITKKDAII 117
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
T+YRDHCTF+GRGG L++ FSELMGRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPL
Sbjct: 118 TSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPL 177
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
GCGLAFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA
Sbjct: 178 GCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAT 237
Query: 239 WRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298
WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSM
Sbjct: 238 WRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSM 297
Query: 299 SDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358
SDPGSTYRTRDEISGVRQ RDPIER+RKL+L HD+ATEKELKD+EKE+RKEVDDA+A+AK
Sbjct: 298 SDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKEIRKEVDDAVAQAK 357
Query: 359 E 359
E
Sbjct: 358 E 358
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1 |
| >sp|P52901|ODPA1_ARATH Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=E1 ALPHA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/359 (83%), Positives = 333/359 (92%), Gaps = 5/359 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETT 60
MALS+LSS S++ I +P + +F R ISTDTTP+TIETS+PFT+H C+ PSRSVE++
Sbjct: 1 MALSRLSSRSNI---ITRPFSAAF--SRLISTDTTPITIETSLPFTAHLCDPPSRSVESS 55
Query: 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120
+ELL FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITA
Sbjct: 56 SQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITA 115
Query: 121 YRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGC 180
YRDHC FLGRGG+L EVFSELMGR+ GCS GKGGSMHFYKK+S FYGGHGIVGAQ+PLGC
Sbjct: 116 YRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGC 175
Query: 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR 240
G+AFAQKY+K+E VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWR
Sbjct: 176 GIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWR 235
Query: 241 AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300
AAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSD
Sbjct: 236 AAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSD 295
Query: 301 PGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
PGSTYRTRDEISGVRQERDPIERI+KL+L+HDLATEKELKD+EKE+RKEVDDAIAKAK+
Sbjct: 296 PGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|P52902|ODPA_PEA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/342 (86%), Positives = 322/342 (94%), Gaps = 1/342 (0%)
Query: 19 PLTNSFLLHRPISTDTTP-LTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRM 77
P + +F L+RPIS+DTT LTIETS+PFT+H C+ PSRSV T+P ELLSFFR MA MRRM
Sbjct: 21 PFSAAFTLNRPISSDTTATLTIETSLPFTAHNCDPPSRSVTTSPSELLSFFRTMALMRRM 80
Query: 78 EIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEV 137
EIAADSLYKA L+RGFCHLYDGQEAVA+GMEAG TKKD IITAYRDHCTFLGRGGTLL V
Sbjct: 81 EIAADSLYKANLIRGFCHLYDGQEAVAVGMEAGTTKKDCIITAYRDHCTFLGRGGTLLRV 140
Query: 138 FSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFA 197
++ELMGR+DGCS GKGGSMHFYKKDSGFYGGHGIVGAQ+PLGCGLAF QKY KDE+VTFA
Sbjct: 141 YAELMGRRDGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFA 200
Query: 198 LYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGL 257
LYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGL
Sbjct: 201 LYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGL 260
Query: 258 KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 317
KVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE
Sbjct: 261 KVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 320
Query: 318 RDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
RDPIER+RKL+L+HD+ATEKELKD EKEVRKEVD+AIAKAK+
Sbjct: 321 RDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKD 362
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|Q6Z5N4|ODPA1_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0739600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 613 bits (1582), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/338 (83%), Positives = 306/338 (90%)
Query: 22 NSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAA 81
+ + R IS T PLTIETSVPFTSH + PSR V TTP ELL+FFR M+ MRRMEIAA
Sbjct: 18 TALIAARSISDSTAPLTIETSVPFTSHIVDPPSRDVTTTPAELLTFFRDMSVMRRMEIAA 77
Query: 82 DSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSEL 141
DSLYKAKL+RGFCHLYDGQEAVA+GMEA IT+ DSIITAYRDHCT+L RGG L+ F+EL
Sbjct: 78 DSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRSDSIITAYRDHCTYLARGGDLVSAFAEL 137
Query: 142 MGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGD 201
MGR+ GCS GKGGSMHFYKKD+ FYGGHGIVGAQ+PLGCGLAFAQKY K+ET TFALYGD
Sbjct: 138 MGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAFAQKYRKEETATFALYGD 197
Query: 202 GAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDG 261
GAANQGQLFEALNI+ALW LPAILVCENNHYGMGTAEWRAAKSP+YYKRGDYVPGLKVDG
Sbjct: 198 GAANQGQLFEALNISALWKLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDG 257
Query: 262 MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPI 321
MD LAVKQACKFAKEHA+ NGP++LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPI
Sbjct: 258 MDVLAVKQACKFAKEHAIANGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPI 317
Query: 322 ERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
ER+RKLILAHDLAT ELKD+EKE+RKEVDDAIAKAKE
Sbjct: 318 ERVRKLILAHDLATAAELKDMEKEIRKEVDDAIAKAKE 355
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|P52903|ODPA_SOLTU Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 285/353 (80%), Positives = 319/353 (90%), Gaps = 1/353 (0%)
Query: 8 SPSSLSTNILKPLTNSFLLHRPISTDTTP-LTIETSVPFTSHQCEAPSRSVETTPKELLS 66
S S +I+KPL+ + R +S+D+T +T+ETS+PFTSH + PSRSVET+PKEL++
Sbjct: 4 STSRAINHIMKPLSAAVCATRRLSSDSTATITVETSLPFTSHNIDPPSRSVETSPKELMT 63
Query: 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCT 126
FF+ M MRRMEIAADSLYKAKL+RGFCHLYDGQEAVA+GMEA ITKKD IITAYRDHC
Sbjct: 64 FFKDMTEMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKKDCIITAYRDHCI 123
Query: 127 FLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQ 186
FLGRGGTL+E F+ELMGR+DGCS GKGGSMHFYKK+SGFYGGHGIVGAQ+PLG GLAFAQ
Sbjct: 124 FLGRGGTLVEAFAELMGRRDGCSRGKGGSMHFYKKESGFYGGHGIVGAQVPLGIGLAFAQ 183
Query: 187 KYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246
KY K++ VTFA+YGDGAANQGQLFEALN+AALWDLPAILVCENNHYGMGTAEWRAAKSP+
Sbjct: 184 KYKKEDYVTFAMYGDGAANQGQLFEALNMAALWDLPAILVCENNHYGMGTAEWRAAKSPA 243
Query: 247 YYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYR 306
YYKRGDYVPGL+VDGMD AVKQAC FAK+HALKNGP+ILEMDTYRYHGHSMSDPGSTYR
Sbjct: 244 YYKRGDYVPGLRVDGMDVFAVKQACTFAKQHALKNGPIILEMDTYRYHGHSMSDPGSTYR 303
Query: 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
TRDEISGVRQERDP+ERIR LILAH++ATE ELKDIEKE RK VD+AIAKAKE
Sbjct: 304 TRDEISGVRQERDPVERIRSLILAHNIATEAELKDIEKENRKVVDEAIAKAKE 356
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|Q654V6|ODPA2_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0246500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 573 bits (1478), Expect = e-163, Method: Compositional matrix adjust.
Identities = 261/332 (78%), Positives = 294/332 (88%)
Query: 28 RPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA 87
R +S T PLTIETSVP+ SH + P R V TT +EL +FFR M+ MRR EIAADSLYKA
Sbjct: 32 RGVSDSTEPLTIETSVPYKSHIVDPPPREVATTARELATFFRDMSAMRRAEIAADSLYKA 91
Query: 88 KLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDG 147
KL+RGFCHLYDGQEAVA+GMEA T+ D+IITAYRDHC +L RGG L +F+ELMGR+ G
Sbjct: 92 KLIRGFCHLYDGQEAVAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGG 151
Query: 148 CSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQG 207
CS GKGGSMH YKKD+ FYGGHGIVGAQ+PLGCGLAFAQ+Y K+ VTF LYGDGAANQG
Sbjct: 152 CSRGKGGSMHLYKKDANFYGGHGIVGAQVPLGCGLAFAQRYRKEAAVTFDLYGDGAANQG 211
Query: 208 QLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAV 267
QLFEALN+AALW LP +LVCENNHYGMGTAEWRA+KSP+YYKRGDYVPGLKVDGMD LAV
Sbjct: 212 QLFEALNMAALWKLPVVLVCENNHYGMGTAEWRASKSPAYYKRGDYVPGLKVDGMDVLAV 271
Query: 268 KQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327
KQACKFAK+HAL+NGP+ILEMDTYRYHGHSMSDPGSTYRTRDEI+G+RQERDPIER+RKL
Sbjct: 272 KQACKFAKQHALENGPIILEMDTYRYHGHSMSDPGSTYRTRDEIAGIRQERDPIERVRKL 331
Query: 328 ILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
+LAHD AT +ELKD+EKE+RK+VD AIAKAKE
Sbjct: 332 LLAHDFATTQELKDMEKEIRKQVDTAIAKAKE 363
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|Q54C70|ODPA_DICDI Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/312 (60%), Positives = 231/312 (74%), Gaps = 3/312 (0%)
Query: 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIG 106
++ C+ PS S T EL+SFF +M+ RR+E D LYK KL+RGFCHLY GQEAV G
Sbjct: 35 TYLCDGPSDSTVTNKDELISFFTEMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAG 94
Query: 107 MEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY 166
+E+ ITK D IITAYRDH L RG T E+F+EL+ ++ GCS GKGGSMH + K+ FY
Sbjct: 95 LESAITKDDHIITAYRDHTYMLSRGATPEEIFAELLMKETGCSKGKGGSMHMFTKN--FY 152
Query: 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226
GG+GIVGAQ PLG G+AFAQKY+K V A+YGDGAANQGQLFEA N+A+LW LP I +
Sbjct: 153 GGNGIVGAQCPLGAGIAFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFI 212
Query: 227 CENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMI 285
CENN YGMGT++ R+ +Y RG YV GLKVDGMD AVK+A K+A E NGP+I
Sbjct: 213 CENNKYGMGTSQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPII 272
Query: 286 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKE 345
LEMDTYRY GHSMSDPG TYRTR+E++ VRQ RDPIE IR++IL + +ATE +L IE+
Sbjct: 273 LEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAIEET 332
Query: 346 VRKEVDDAIAKA 357
VR E++ A KA
Sbjct: 333 VRDEMEKASEKA 344
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 243/349 (69%), Gaps = 5/349 (1%)
Query: 11 SLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCE-APSRSVETTPKELLSFFR 69
SL L+ LT S + + + +T ++ T P H+ + P+ SV ++ L ++R
Sbjct: 2 SLFARQLQSLTASGIRTQQVRLASTEVSFHTK-PCKLHKLDNGPNTSVTLNREDALKYYR 60
Query: 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLG 129
M +RRME AA +LYK K +RGFCHLY GQEA A+GM+A +T+ D++ITAYR H
Sbjct: 61 DMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGWTWL 120
Query: 130 RGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYS 189
G T+ EV +EL GR G HGKGGSMH Y K+ FYGG+GIVGAQ PLG G+A A KY
Sbjct: 121 LGATVTEVLAELTGRVAGNVHGKGGSMHMYTKN--FYGGNGIVGAQQPLGAGVALAMKYR 178
Query: 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK 249
+ + V LYGDGAANQGQLFEA N+A LWDLP + VCENN +GMGT R++ S YY
Sbjct: 179 EQKNVCVTLYGDGAANQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYT 238
Query: 250 RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTR 308
RGDYVPG+ VDGMD LAV++A K+AKE+ GP+++EM TYRYHGHSMSDPG++YRTR
Sbjct: 239 RGDYVPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTR 298
Query: 309 DEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKA 357
+EI VR+ RDPI + I+ LATE+ELK I+KEVRKEVD+A+ A
Sbjct: 299 EEIQEVRKTRDPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIA 347
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|Q10489|ODPA_SCHPO Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pda1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/325 (55%), Positives = 233/325 (71%), Gaps = 4/325 (1%)
Query: 36 PLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCH 95
P+ ++ SV F ++ + PS +E T ELL + +M T+RR+E+A D+LYKAK +RGFCH
Sbjct: 51 PVKLDDSV-FEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCH 109
Query: 96 LYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGS 155
L GQEAVA G+E IT DSIIT+YR H RG ++ + ELMGR+ G S GKGGS
Sbjct: 110 LSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGS 169
Query: 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215
MH + K+ FYGG+GIVGAQIPLG G+ FAQKY + T TFALYGDGA+NQGQ FEA N+
Sbjct: 170 MHIFAKN--FYGGNGIVGAQIPLGAGIGFAQKYLEKPTTTFALYGDGASNQGQAFEAFNM 227
Query: 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAK 275
A LW LP I CENN YGMGT+ R++ +YKRG Y+PGL V+GMD LAV QA KFAK
Sbjct: 228 AKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVLAVLQASKFAK 287
Query: 276 EHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLA 334
++ ++N P+++E TYRY GHSMSDPG+TYR+R+E+ VR RDPIE ++K I+ +A
Sbjct: 288 KYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEWGVA 347
Query: 335 TEKELKDIEKEVRKEVDDAIAKAKE 359
ELK+IEK +R VD+ + A+E
Sbjct: 348 NANELKNIEKRIRGMVDEEVRIAEE 372
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|P16387|ODPA_YEAST Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/324 (54%), Positives = 230/324 (70%), Gaps = 6/324 (1%)
Query: 38 TIETSVP---FTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFC 94
T++ +P F S+ E P S ET+ LL ++ M +RRME+A D+LYKAK +RGFC
Sbjct: 52 TVQIELPESSFESYMLEPPDLSYETSKATLLQMYKDMVIIRRMEMACDALYKAKKIRGFC 111
Query: 95 HLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGG 154
HL GQEA+A+G+E ITK DSIIT+YR H RG ++ V +ELMGR+ G S+GKGG
Sbjct: 112 HLSVGQEAIAVGIENAITKLDSIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGG 171
Query: 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214
SMH Y GFYGG+GIVGAQ+PLG GLAFA +Y ++ +F LYGDGA+NQGQ+FE+ N
Sbjct: 172 SMHLYA--PGFYGGNGIVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFN 229
Query: 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFA 274
+A LW+LP + CENN YGMGTA R++ Y+KRG Y+PGLKV+GMD LAV QA KFA
Sbjct: 230 MAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQYIPGLKVNGMDILAVYQASKFA 289
Query: 275 KEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDL 333
K+ L GP++LE +TYRY GHSMSDPG+TYRTRDEI +R + DPI ++ ++ +
Sbjct: 290 KDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLIDLGI 349
Query: 334 ATEKELKDIEKEVRKEVDDAIAKA 357
ATE E+K +K RK VD+ + A
Sbjct: 350 ATEAEVKAYDKSARKYVDEQVELA 373
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| 68138987 | 395 | pyruvate dehydrogenase, partial [Citrus | 0.983 | 0.901 | 0.985 | 0.0 | |
| 211906500 | 394 | pyruvate dehydrogenase alpha subunit [Go | 0.917 | 0.842 | 0.921 | 0.0 | |
| 255558342 | 399 | pyruvate dehydrogenase, putative [Ricinu | 0.986 | 0.894 | 0.849 | 0.0 | |
| 157849684 | 389 | pyruvate dehydrogenase complex E1 alpha | 0.977 | 0.910 | 0.852 | 0.0 | |
| 356567586 | 395 | PREDICTED: pyruvate dehydrogenase E1 com | 0.997 | 0.913 | 0.823 | 0.0 | |
| 356526868 | 394 | PREDICTED: pyruvate dehydrogenase E1 com | 0.994 | 0.913 | 0.823 | 0.0 | |
| 15221692 | 393 | pyruvate dehydrogenase E1 component subu | 0.983 | 0.905 | 0.822 | 1e-180 | |
| 297850898 | 393 | IAA-conjugate-resistant 4 [Arabidopsis l | 0.983 | 0.905 | 0.819 | 1e-180 | |
| 15218940 | 389 | pyruvate dehydrogenase complex E1 alpha | 0.977 | 0.910 | 0.838 | 1e-180 | |
| 13430788 | 389 | putative pyruvate dehydrogenase e1 alpha | 0.977 | 0.910 | 0.838 | 1e-180 |
| >gi|68138987|gb|AAY86036.1| pyruvate dehydrogenase, partial [Citrus x paradisi] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/356 (98%), Positives = 352/356 (98%)
Query: 4 SKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE 63
SKLSS SSLSTNILKPLTNSF LHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE
Sbjct: 5 SKLSSSSSLSTNILKPLTNSFFLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE 64
Query: 64 LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD 123
LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD
Sbjct: 65 LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD 124
Query: 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLA 183
HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS YGGHGIVGAQIPLGCGLA
Sbjct: 125 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSRLYGGHGIVGAQIPLGCGLA 184
Query: 184 FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 243
FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK
Sbjct: 185 FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 244
Query: 244 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS 303
SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS
Sbjct: 245 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS 304
Query: 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVD+AIAKAKE
Sbjct: 305 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDEAIAKAKE 360
|
Source: Citrus x paradisi Species: Citrus x paradisi Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906500|gb|ACJ11743.1| pyruvate dehydrogenase alpha subunit [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/332 (92%), Positives = 321/332 (96%)
Query: 28 RPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA 87
RPIS D +PLT+ETSVPFTSHQCEAPSRSVET PKELL+FFR MA MRRMEIAADSLYKA
Sbjct: 28 RPISGDNSPLTVETSVPFTSHQCEAPSRSVETNPKELLTFFRDMALMRRMEIAADSLYKA 87
Query: 88 KLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDG 147
KL+RGFCHLYDGQEAVA+GMEA ITKKD IITAYRDHCTF+ RGGTLLEVF+ELMGR+ G
Sbjct: 88 KLIRGFCHLYDGQEAVAVGMEAAITKKDCIITAYRDHCTFVSRGGTLLEVFAELMGRQAG 147
Query: 148 CSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQG 207
CS GKGGSMHFYKKDS FYGGHGIVGAQ+PLGCGLAFAQKYSKDETVTFALYGDGAANQG
Sbjct: 148 CSKGKGGSMHFYKKDSNFYGGHGIVGAQVPLGCGLAFAQKYSKDETVTFALYGDGAANQG 207
Query: 208 QLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAV 267
QLFEALNI+ALWDLPAILVCENNHYGMGTAEWRAAKSP+YYKRGDYVPGLKVDGMDALAV
Sbjct: 208 QLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDALAV 267
Query: 268 KQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327
KQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL
Sbjct: 268 KQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327
Query: 328 ILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
IL+HDLATEKELKD+EKEVRKEVDDAIA+AKE
Sbjct: 328 ILSHDLATEKELKDVEKEVRKEVDDAIAQAKE 359
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558342|ref|XP_002520198.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223540690|gb|EEF42253.1| pyruvate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/366 (84%), Positives = 337/366 (92%), Gaps = 9/366 (2%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSFL-------LHRPISTDTTPLTIETSVPFTSHQCEAP 53
MALS L+S S +N+LK LT + L RPIST + PLTIETSVPFT H+CE P
Sbjct: 1 MALSHLTSSSR--SNLLKSLTTTTTTAAAAFTLRRPISTSSDPLTIETSVPFTPHRCEPP 58
Query: 54 SRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK 113
SR+V+TTP+ELLSFFR MATMRRMEIAADSLYKAKL+RGFCHLYDGQEAVA+GMEA ITK
Sbjct: 59 SRNVDTTPQELLSFFRDMATMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITK 118
Query: 114 KDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVG 173
KD IITAYRDHCTF+GRGGT+L+VF+ELMGRKDGCS GKGGSMHFYKK++GFYGGHGIVG
Sbjct: 119 KDCIITAYRDHCTFVGRGGTMLQVFAELMGRKDGCSRGKGGSMHFYKKEAGFYGGHGIVG 178
Query: 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG 233
AQIPLGCGLAFAQKY+KDETVTFALYGDGAANQGQLFEALNI+ALWDLP ILVCENNHYG
Sbjct: 179 AQIPLGCGLAFAQKYNKDETVTFALYGDGAANQGQLFEALNISALWDLPVILVCENNHYG 238
Query: 234 MGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293
MGTAEWRAAKSP+YYKRGDYVPGLKVDGMD LAVKQACKFAKE LKNGP+ILEMDTYRY
Sbjct: 239 MGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEFVLKNGPLILEMDTYRY 298
Query: 294 HGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDA 353
HGHSMSDPGSTYRTRDEISGVRQERDPIERIRK+ILAHDLATEKELKD+EKE+RKE+DDA
Sbjct: 299 HGHSMSDPGSTYRTRDEISGVRQERDPIERIRKVILAHDLATEKELKDMEKEIRKEIDDA 358
Query: 354 IAKAKE 359
IA+AKE
Sbjct: 359 IAQAKE 364
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157849684|gb|ABV89625.1| pyruvate dehydrogenase complex E1 alpha subunit dehydrogenase [Brassica rapa] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/359 (85%), Positives = 337/359 (93%), Gaps = 5/359 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETT 60
MALS+LSS S++ I +PL+ +F R ISTDTTP+TIETS+PFT+H C+ PSRSVE++
Sbjct: 1 MALSRLSSRSNI---ISRPLSAAF--RRSISTDTTPITIETSLPFTAHLCDPPSRSVESS 55
Query: 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120
+ELLSFFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITA
Sbjct: 56 TQELLSFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITA 115
Query: 121 YRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGC 180
YRDHC FLGRGG+L EVF+ELMGR+DGCS GKGGSMHFYKKDS FYGGHGIVGAQ+PLGC
Sbjct: 116 YRDHCIFLGRGGSLYEVFAELMGRQDGCSRGKGGSMHFYKKDSSFYGGHGIVGAQVPLGC 175
Query: 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR 240
G+AFAQKYSK+E VTFA+YGDGAANQGQLFEALNI+ALWDLP+ILVCENNHYGMGTAEWR
Sbjct: 176 GIAFAQKYSKEEAVTFAMYGDGAANQGQLFEALNISALWDLPSILVCENNHYGMGTAEWR 235
Query: 241 AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300
AAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSD
Sbjct: 236 AAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSD 295
Query: 301 PGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
PGSTYRTRDEISGVRQERDPIERI+KL+L+HDLATEKELKD+EKE+RKEVDDAIAKAK+
Sbjct: 296 PGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354
|
Source: Brassica rapa Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567586|ref|XP_003551999.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/362 (82%), Positives = 332/362 (91%), Gaps = 1/362 (0%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF-LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVET 59
MALS+++ S +N+LKPL++ L R +ST + PLT+ETSVPFTSH C+AP R+VET
Sbjct: 1 MALSRVAQSSPSQSNLLKPLSSYLSLRRRSVSTSSEPLTVETSVPFTSHNCDAPPRAVET 60
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIIT 119
+ EL SFFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVA+GMEA IT+KD IIT
Sbjct: 61 SSAELFSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRKDCIIT 120
Query: 120 AYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLG 179
AYRDHCTFL RGGTL+EVF+ELMGR+DGCS GKGGSMHFY+K+ GFYGGHGIVGAQ+PLG
Sbjct: 121 AYRDHCTFLARGGTLIEVFAELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLG 180
Query: 180 CGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW 239
CGLAFAQKY KDE VTF++YGDGAANQGQLFEALNI+ALWDLP+ILVCENNHYGMGTAEW
Sbjct: 181 CGLAFAQKYCKDENVTFSMYGDGAANQGQLFEALNISALWDLPSILVCENNHYGMGTAEW 240
Query: 240 RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299
RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKE ALKNGP+ILEMDTYRYHGHSMS
Sbjct: 241 RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEFALKNGPIILEMDTYRYHGHSMS 300
Query: 300 DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
DPGSTYRTRDEISGVRQERDPIER+RKL+L H++ATEKELKDIEKE+RKEVD+AIAKAKE
Sbjct: 301 DPGSTYRTRDEISGVRQERDPIERVRKLLLTHEIATEKELKDIEKEIRKEVDEAIAKAKE 360
Query: 360 GR 361
+
Sbjct: 361 SQ 362
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526868|ref|XP_003532038.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/362 (82%), Positives = 332/362 (91%), Gaps = 2/362 (0%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF-LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVET 59
MALS++ + SS S N+LKPL + L R +ST + PLTIETSVPFTSH C+APSR+VET
Sbjct: 1 MALSRVVAQSSQS-NLLKPLASYLSLRRRSVSTSSDPLTIETSVPFTSHNCDAPSRAVET 59
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIIT 119
+ EL +FF MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVA+GMEA IT+KD +IT
Sbjct: 60 SSAELFAFFHDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRKDCVIT 119
Query: 120 AYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLG 179
AYRDHCTFL RGGTL+E+FSELMGR+DGCS GKGGSMHFY+K+ GFYGGHGIVGAQ+PLG
Sbjct: 120 AYRDHCTFLARGGTLIEIFSELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLG 179
Query: 180 CGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW 239
CGLAFAQKY KDE VTF++YGDGAANQGQLFEALNI+ALWDLP+ILVCENNHYGMGTAEW
Sbjct: 180 CGLAFAQKYCKDENVTFSMYGDGAANQGQLFEALNISALWDLPSILVCENNHYGMGTAEW 239
Query: 240 RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299
RAAKSP+YYKRGDYVPGLKVDGMDALAVKQACKFAKE ALKNGP+ILEMDTYRYHGHSMS
Sbjct: 240 RAAKSPAYYKRGDYVPGLKVDGMDALAVKQACKFAKEFALKNGPIILEMDTYRYHGHSMS 299
Query: 300 DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
DPGSTYRTRDEISGVRQERDPIER+RKL+L H++ATEKELKDIEKE+RKEVD+AIAKAKE
Sbjct: 300 DPGSTYRTRDEISGVRQERDPIERVRKLLLTHEIATEKELKDIEKEIRKEVDEAIAKAKE 359
Query: 360 GR 361
+
Sbjct: 360 SQ 361
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221692|ref|NP_173828.1| pyruvate dehydrogenase E1 component subunit alpha-2 [Arabidopsis thaliana] gi|118573089|sp|Q8H1Y0.2|ODPA2_ARATH RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|13430606|gb|AAK25925.1|AF360215_1 putative pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|2829869|gb|AAC00577.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|15293169|gb|AAK93695.1| putative pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|21593680|gb|AAM65647.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|332192371|gb|AEE30492.1| pyruvate dehydrogenase E1 component subunit alpha-2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 297/361 (82%), Positives = 333/361 (92%), Gaps = 5/361 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF--LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVE 58
MALS+LSS S+ LKP + + R +STD++P+TIET+VPFTSH CE+PSRSVE
Sbjct: 1 MALSRLSSRSN---TFLKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVE 57
Query: 59 TTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
T+ +E+L+FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEA+A+GMEA ITKKD+II
Sbjct: 58 TSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITKKDAII 117
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
T+YRDHCTF+GRGG L++ FSELMGRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPL
Sbjct: 118 TSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPL 177
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
GCGLAFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA
Sbjct: 178 GCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAT 237
Query: 239 WRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298
WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSM
Sbjct: 238 WRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSM 297
Query: 299 SDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358
SDPGSTYRTRDEISGVRQ RDPIER+RKL+L HD+ATEKELKD+EKE+RKEVDDA+A+AK
Sbjct: 298 SDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKEIRKEVDDAVAQAK 357
Query: 359 E 359
E
Sbjct: 358 E 358
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850898|ref|XP_002893330.1| IAA-conjugate-resistant 4 [Arabidopsis lyrata subsp. lyrata] gi|297339172|gb|EFH69589.1| IAA-conjugate-resistant 4 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 296/361 (81%), Positives = 334/361 (92%), Gaps = 5/361 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF--LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVE 58
MALS+LSS S+ LKP + + R +STD++P+TIET+VPFTSH CE+PSRSVE
Sbjct: 1 MALSRLSSRSN---TFLKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVE 57
Query: 59 TTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
T+ +E+L+FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEA+A+GMEA IT+KD+II
Sbjct: 58 TSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITRKDAII 117
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
T+YRDHCTF+GRGG L++ FSELMGRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPL
Sbjct: 118 TSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPL 177
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
GCGLAFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA
Sbjct: 178 GCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAT 237
Query: 239 WRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298
WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSM
Sbjct: 238 WRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSM 297
Query: 299 SDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358
SDPGSTYRTRDEISGVRQ RDPIER+RKL+L+HD+ATEKELKD+EKE+RKEVDDA+A+AK
Sbjct: 298 SDPGSTYRTRDEISGVRQVRDPIERVRKLLLSHDIATEKELKDMEKEIRKEVDDAVAQAK 357
Query: 359 E 359
E
Sbjct: 358 E 358
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218940|ref|NP_176198.1| pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana] gi|27735220|sp|P52901.2|ODPA1_ARATH RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|5080822|gb|AAD39331.1|AC007258_20 pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|21593256|gb|AAM65205.1| pyruvate dehydrogenase e1 alpha subunit, putative [Arabidopsis thaliana] gi|24030439|gb|AAN41374.1| putative pyruvate dehydrogenase e1 alpha subunit [Arabidopsis thaliana] gi|332195517|gb|AEE33638.1| pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 301/359 (83%), Positives = 333/359 (92%), Gaps = 5/359 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETT 60
MALS+LSS S++ I +P + +F R ISTDTTP+TIETS+PFT+H C+ PSRSVE++
Sbjct: 1 MALSRLSSRSNI---ITRPFSAAF--SRLISTDTTPITIETSLPFTAHLCDPPSRSVESS 55
Query: 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120
+ELL FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITA
Sbjct: 56 SQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITA 115
Query: 121 YRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGC 180
YRDHC FLGRGG+L EVFSELMGR+ GCS GKGGSMHFYKK+S FYGGHGIVGAQ+PLGC
Sbjct: 116 YRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGC 175
Query: 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR 240
G+AFAQKY+K+E VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWR
Sbjct: 176 GIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWR 235
Query: 241 AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300
AAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSD
Sbjct: 236 AAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSD 295
Query: 301 PGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
PGSTYRTRDEISGVRQERDPIERI+KL+L+HDLATEKELKD+EKE+RKEVDDAIAKAK+
Sbjct: 296 PGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13430788|gb|AAK26016.1|AF360306_1 putative pyruvate dehydrogenase e1 alpha subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 301/359 (83%), Positives = 333/359 (92%), Gaps = 5/359 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETT 60
MALS+LSS S++ I +P + +F R ISTDTTP+TIETS+PFT+H C+ PSRSVE++
Sbjct: 1 MALSRLSSRSNI---ITRPFSAAF--SRLISTDTTPITIETSLPFTAHLCDPPSRSVESS 55
Query: 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120
+ELL FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITA
Sbjct: 56 SQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITA 115
Query: 121 YRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGC 180
YRDHC FLGRGG+L EVFSELMGR+ GCS GKGGSMHFYKK+S FYGGHGIVGAQ+PLGC
Sbjct: 116 YRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGC 175
Query: 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR 240
G+AFAQKY+K+E VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWR
Sbjct: 176 GIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWR 235
Query: 241 AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300
AAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSD
Sbjct: 236 AAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSD 295
Query: 301 PGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
PGSTYRTRDEISGVRQERDPIERI+KL+L+HDLATEKELKD+EKE+RKEVDDAIAKAK+
Sbjct: 296 PGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| TAIR|locus:2032367 | 393 | IAR4 "IAA-CONJUGATE-RESISTANT | 0.947 | 0.872 | 0.837 | 5.7e-162 | |
| TAIR|locus:2025966 | 389 | E1 ALPHA "pyruvate dehydrogena | 0.950 | 0.884 | 0.847 | 1.9e-161 | |
| DICTYBASE|DDB_G0292994 | 377 | pdhA "pyruvate dehydrogenase E | 0.853 | 0.819 | 0.605 | 6.4e-99 | |
| ZFIN|ZDB-GENE-040426-2719 | 393 | pdha1a "pyruvate dehydrogenase | 0.831 | 0.765 | 0.582 | 2.6e-95 | |
| WB|WBGene00011510 | 414 | pdha-1 [Caenorhabditis elegans | 0.922 | 0.806 | 0.554 | 2.3e-94 | |
| CGD|CAL0001531 | 401 | PDA1 [Candida albicans (taxid: | 0.883 | 0.798 | 0.537 | 1.6e-93 | |
| POMBASE|SPAC26F1.03 | 409 | pda1 "pyruvate dehydrogenase e | 0.911 | 0.806 | 0.546 | 2.1e-93 | |
| SGD|S000000980 | 420 | PDA1 "E1 alpha subunit of the | 0.889 | 0.766 | 0.548 | 5.5e-93 | |
| UNIPROTKB|P52900 | 363 | PDHA "Pyruvate dehydrogenase E | 0.831 | 0.829 | 0.565 | 9e-93 | |
| UNIPROTKB|A7MB35 | 390 | PDHA1 "Pyruvate dehydrogenase | 0.831 | 0.771 | 0.565 | 3.9e-92 |
| TAIR|locus:2032367 IAR4 "IAA-CONJUGATE-RESISTANT 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
Identities = 289/345 (83%), Positives = 323/345 (93%)
Query: 17 LKPLTNSF--LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATM 74
LKP + + R +STD++P+TIET+VPFTSH CE+PSRSVET+ +E+L+FFR MA M
Sbjct: 14 LKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVETSSEEILAFFRDMARM 73
Query: 75 RRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134
RRMEIAADSLYKAKL+RGFCHLYDGQEA+A+GMEA ITKKD+IIT+YRDHCTF+GRGG L
Sbjct: 74 RRMEIAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITKKDAIITSYRDHCTFIGRGGKL 133
Query: 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETV 194
++ FSELMGRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPLGCGLAFAQKY+KDE V
Sbjct: 134 VDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPLGCGLAFAQKYNKDEAV 193
Query: 195 TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYV 254
TFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYV
Sbjct: 194 TFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYV 253
Query: 255 PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGV 314
PGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGV
Sbjct: 254 PGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGV 313
Query: 315 RQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
RQ RDPIER+RKL+L HD+ATEKELKD+EKE+RKEVDDA+A+AKE
Sbjct: 314 RQVRDPIERVRKLLLTHDIATEKELKDMEKEIRKEVDDAVAQAKE 358
|
|
| TAIR|locus:2025966 E1 ALPHA "pyruvate dehydrogenase complex E1 alpha subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1572 (558.4 bits), Expect = 1.9e-161, P = 1.9e-161
Identities = 294/347 (84%), Positives = 325/347 (93%)
Query: 14 TNIL-KPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMA 72
+NI+ +P + +F R ISTDTTP+TIETS+PFT+H C+ PSRSVE++ +ELL FFR MA
Sbjct: 10 SNIITRPFSAAF--SRLISTDTTPITIETSLPFTAHLCDPPSRSVESSSQELLDFFRTMA 67
Query: 73 TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132
MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITAYRDHC FLGRGG
Sbjct: 68 LMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITAYRDHCIFLGRGG 127
Query: 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192
+L EVFSELMGR+ GCS GKGGSMHFYKK+S FYGGHGIVGAQ+PLGCG+AFAQKY+K+E
Sbjct: 128 SLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGCGIAFAQKYNKEE 187
Query: 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252
VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD
Sbjct: 188 AVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 247
Query: 253 YVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312
YVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSDPGSTYRTRDEIS
Sbjct: 248 YVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSDPGSTYRTRDEIS 307
Query: 313 GVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
GVRQERDPIERI+KL+L+HDLATEKELKD+EKE+RKEVDDAIAKAK+
Sbjct: 308 GVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354
|
|
| DICTYBASE|DDB_G0292994 pdhA "pyruvate dehydrogenase E1 alpha subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 189/312 (60%), Positives = 231/312 (74%)
Query: 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIG 106
++ C+ PS S T EL+SFF +M+ RR+E D LYK KL+RGFCHLY GQEAV G
Sbjct: 35 TYLCDGPSDSTVTNKDELISFFTEMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAG 94
Query: 107 MEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY 166
+E+ ITK D IITAYRDH L RG T E+F+EL+ ++ GCS GKGGSMH + K+ FY
Sbjct: 95 LESAITKDDHIITAYRDHTYMLSRGATPEEIFAELLMKETGCSKGKGGSMHMFTKN--FY 152
Query: 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226
GG+GIVGAQ PLG G+AFAQKY+K V A+YGDGAANQGQLFEA N+A+LW LP I +
Sbjct: 153 GGNGIVGAQCPLGAGIAFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFI 212
Query: 227 CENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMI 285
CENN YGMGT++ R+ +Y RG YV GLKVDGMD AVK+A K+A E NGP+I
Sbjct: 213 CENNKYGMGTSQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPII 272
Query: 286 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKE 345
LEMDTYRY GHSMSDPG TYRTR+E++ VRQ RDPIE IR++IL + +ATE +L IE+
Sbjct: 273 LEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAIEET 332
Query: 346 VRKEVDDAIAKA 357
VR E++ A KA
Sbjct: 333 VRDEMEKASEKA 344
|
|
| ZFIN|ZDB-GENE-040426-2719 pdha1a "pyruvate dehydrogenase (lipoamide) alpha 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 177/304 (58%), Positives = 226/304 (74%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P+ T +E L ++R M TMRRME+ AD LYK K++RGFCHLYDGQEA A+G+EAG
Sbjct: 51 EGPAVQAVLTREEGLQYYRTMQTMRRMELKADQLYKQKIIRGFCHLYDGQEACAVGIEAG 110
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H L RGGT+ E+ +EL GR+ G + GKGGSMH Y K FYGG+G
Sbjct: 111 INLSDHLITAYRAHGYTLTRGGTVREIMAELTGRRGGIAKGKGGSMHMYTKH--FYGGNG 168
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY + LYGDGAANQGQ+FE N+A+LW LP I +CENN
Sbjct: 169 IVGAQVPLGAGVALACKYQGKNELCVCLYGDGAANQGQIFETYNMASLWKLPCIFICENN 228
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMD 289
YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A KFA EH GP+++E+
Sbjct: 229 KYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDVLCVREATKFAAEHCRSGKGPILMELQ 288
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKE 349
TYRYHGHSMSDPG +YRTR+EI VR + DPI ++ +L++++A+ +ELK+I+ EVRKE
Sbjct: 289 TYRYHGHSMSDPGVSYRTREEIQEVRSKSDPISLLKDRMLSNNMASVEELKEIDVEVRKE 348
Query: 350 VDDA 353
++DA
Sbjct: 349 IEDA 352
|
|
| WB|WBGene00011510 pdha-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 189/341 (55%), Positives = 243/341 (71%)
Query: 17 LKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCE-APSRSVETTPKELLSFFRQMATMR 75
L+ LT S + + + +T ++ T P H+ + P+ SV ++ L ++R M +R
Sbjct: 25 LQSLTASGIRTQQVRLASTEVSFHTK-PCKLHKLDNGPNTSVTLNREDALKYYRDMQVIR 83
Query: 76 RMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDH-CTFLGRGGTL 134
RME AA +LYK K +RGFCHLY GQEA A+GM+A +T+ D++ITAYR H T+L G T+
Sbjct: 84 RMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGWTWL-LGATV 142
Query: 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETV 194
EV +EL GR G HGKGGSMH Y K+ FYGG+GIVGAQ PLG G+A A KY + + V
Sbjct: 143 TEVLAELTGRVAGNVHGKGGSMHMYTKN--FYGGNGIVGAQQPLGAGVALAMKYREQKNV 200
Query: 195 TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYV 254
LYGDGAANQGQLFEA N+A LWDLP + VCENN +GMGT R++ S YY RGDYV
Sbjct: 201 CVTLYGDGAANQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDYV 260
Query: 255 PGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313
PG+ VDGMD LAV++A K+AKE+ GP+++EM TYRYHGHSMSDPG++YRTR+EI
Sbjct: 261 PGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQE 320
Query: 314 VRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAI 354
VR+ RDPI + I+ LATE+ELK I+KEVRKEVD+A+
Sbjct: 321 VRKTRDPITGFKDRIITSSLATEEELKAIDKEVRKEVDEAL 361
|
|
| CGD|CAL0001531 PDA1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 174/324 (53%), Positives = 235/324 (72%)
Query: 37 LTIETSVP-FTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCH 95
+TIE + + E P+ S ET + LL ++ M +RRME+AAD+LYK+K +RGFCH
Sbjct: 33 VTIELPASSYEGYNLEVPALSFETEKETLLKMYKDMIIIRRMEMAADALYKSKKIRGFCH 92
Query: 96 LYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGS 155
L GQEA+A+G+E IT D++IT+YR H RG ++ V +ELMGR+ G ++GKGGS
Sbjct: 93 LSVGQEAIAVGIENAITPTDTVITSYRCHGFAFMRGASVKSVLAELMGRRSGIANGKGGS 152
Query: 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215
MH + +GFYGG+GIVGAQ+PLG GLAF+ KY D+ VTF LYGDGA+NQGQ+FEA N+
Sbjct: 153 MHMFT--NGFYGGNGIVGAQVPLGAGLAFSHKYKNDKAVTFDLYGDGASNQGQVFEAYNM 210
Query: 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAK 275
A LW+LP I CENN YGMGT+ R++ YYKRG Y+PGLK++GMD LA QA KFAK
Sbjct: 211 AKLWNLPVIFACENNKYGMGTSAARSSAMTEYYKRGQYIPGLKINGMDVLATYQASKFAK 270
Query: 276 EHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLA 334
+ A + NGP++LE +TYRY GHSMSDPG+TYRTR+E+ +R DPI ++ ++L ++A
Sbjct: 271 DWASQGNGPLVLEYETYRYGGHSMSDPGTTYRTREEVQHMRSRNDPIAGLKAVLLEKEIA 330
Query: 335 TEKELKDIEKEVRKEVDDAIAKAK 358
+E E+K +K RK VD+ +A A+
Sbjct: 331 SEDEIKSYDKAARKYVDEQVAAAE 354
|
|
| POMBASE|SPAC26F1.03 pda1 "pyruvate dehydrogenase e1 component alpha subunit Pda1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 183/335 (54%), Positives = 236/335 (70%)
Query: 27 HRPISTDTT-PLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLY 85
H P D P+ ++ SV F ++ + PS +E T ELL + +M T+RR+E+A D+LY
Sbjct: 41 HVPEEHDKPFPVKLDDSV-FEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDALY 99
Query: 86 KAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRK 145
KAK +RGFCHL GQEAVA G+E IT DSIIT+YR H RG ++ + ELMGR+
Sbjct: 100 KAKKIRGFCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQ 159
Query: 146 DGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205
G S GKGGSMH + K+ FYGG+GIVGAQIPLG G+ FAQKY + T TFALYGDGA+N
Sbjct: 160 CGASKGKGGSMHIFAKN--FYGGNGIVGAQIPLGAGIGFAQKYLEKPTTTFALYGDGASN 217
Query: 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDAL 265
QGQ FEA N+A LW LP I CENN YGMGT+ R++ +YKRG Y+PGL V+GMD L
Sbjct: 218 QGQAFEAFNMAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVL 277
Query: 266 AVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERI 324
AV QA KFAK++ ++N P+++E TYRY GHSMSDPG+TYR+R+E+ VR RDPIE +
Sbjct: 278 AVLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGL 337
Query: 325 RKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
+K I+ +A ELK+IEK +R VD+ + A+E
Sbjct: 338 KKHIMEWGVANANELKNIEKRIRGMVDEEVRIAEE 372
|
|
| SGD|S000000980 PDA1 "E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 180/328 (54%), Positives = 234/328 (71%)
Query: 32 TDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVR 91
+DT + + S F S+ E P S ET+ LL ++ M +RRME+A D+LYKAK +R
Sbjct: 50 SDTVQIELPES-SFESYMLEPPDLSYETSKATLLQMYKDMVIIRRMEMACDALYKAKKIR 108
Query: 92 GFCHLYDGQEAVAIGMEAGITKKDSIITAYRDH-CTFLGRGGTLLEVFSELMGRKDGCSH 150
GFCHL GQEA+A+G+E ITK DSIIT+YR H TF+ RG ++ V +ELMGR+ G S+
Sbjct: 109 GFCHLSVGQEAIAVGIENAITKLDSIITSYRCHGFTFM-RGASVKAVLAELMGRRAGVSY 167
Query: 151 GKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLF 210
GKGGSMH Y GFYGG+GIVGAQ+PLG GLAFA +Y ++ +F LYGDGA+NQGQ+F
Sbjct: 168 GKGGSMHLYAP--GFYGGNGIVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVF 225
Query: 211 EALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQA 270
E+ N+A LW+LP + CENN YGMGTA R++ Y+KRG Y+PGLKV+GMD LAV QA
Sbjct: 226 ESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQYIPGLKVNGMDILAVYQA 285
Query: 271 CKFAKEHALKN-GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLIL 329
KFAK+ L GP++LE +TYRY GHSMSDPG+TYRTRDEI +R + DPI ++ ++
Sbjct: 286 SKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLI 345
Query: 330 AHDLATEKELKDIEKEVRKEVDDAIAKA 357
+ATE E+K +K RK VD+ + A
Sbjct: 346 DLGIATEAEVKAYDKSARKYVDEQVELA 373
|
|
| UNIPROTKB|P52900 PDHA "Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial" [Sminthopsis macroura (taxid:9302)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 172/304 (56%), Positives = 225/304 (74%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T +E L +++ M T+RRME+ AD LYK K++RGFCHLYDGQEA +G+EAG
Sbjct: 21 EGPPTTAVLTREEGLKYYKIMQTVRRMELKADQLYKQKIIRGFCHLYDGQEACCMGLEAG 80
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H RG + E+ +EL GR+ GC+ GKGGSMH Y K+ FYGG+G
Sbjct: 81 INPTDHVITAYRAHGFTYTRGLPVREILAELTGRRGGCAKGKGGSMHMYAKN--FYGGNG 138
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY++ + + LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 139 IVGAQVPLGVGIALACKYNEKDEICLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 198
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMD 289
YGMGT+ RAA S YYKRGD++PG+ VDGMD L V++A KFA + GPM++E+
Sbjct: 199 RYGMGTSVERAAASTDYYKRGDFIPGIMVDGMDVLCVREATKFAAAYCRSGKGPMLMELQ 258
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKE 349
TYRYHGHSMSDPG +YRTR+EI VR + DPI ++ ++ ++LA+ +ELK+I+ EVRKE
Sbjct: 259 TYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNNNLASIEELKEIDVEVRKE 318
Query: 350 VDDA 353
++DA
Sbjct: 319 IEDA 322
|
|
| UNIPROTKB|A7MB35 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 172/304 (56%), Positives = 224/304 (73%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA +G+EAG
Sbjct: 48 EGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAG 107
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H RG ++ E+ +EL GR+ GC+ GKGGSMH Y K+ FYGG+G
Sbjct: 108 INPTDHLITAYRAHGFTFTRGLSVREILAELTGRRGGCAKGKGGSMHMYAKN--FYGGNG 165
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 166 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 225
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMD 289
YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A KFA + GP+++E+
Sbjct: 226 RYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQ 285
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKE 349
TYRYHGHSMSDPG +YRTR+EI VR + DPI ++ ++ +LA+ +ELK+I+ EVRKE
Sbjct: 286 TYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKE 345
Query: 350 VDDA 353
++DA
Sbjct: 346 IEDA 349
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P26267 | ODPA_ASCSU | 1, ., 2, ., 4, ., 1 | 0.5144 | 0.9392 | 0.8585 | N/A | no |
| Q6Z5N4 | ODPA1_ORYSJ | 1, ., 2, ., 4, ., 1 | 0.8372 | 0.9337 | 0.8666 | yes | no |
| P52899 | ODPA_CAEEL | 1, ., 2, ., 4, ., 1 | 0.5444 | 0.9502 | 0.8664 | yes | no |
| Q8HXW9 | ODPA_MACFA | 1, ., 2, ., 4, ., 1 | 0.5100 | 0.9143 | 0.8487 | N/A | no |
| Q654V6 | ODPA2_ORYSJ | 1, ., 2, ., 4, ., 1 | 0.7861 | 0.9171 | 0.8341 | no | no |
| P29803 | ODPAT_HUMAN | 1, ., 2, ., 4, ., 1 | 0.5657 | 0.8314 | 0.7757 | yes | no |
| P26268 | ODPT_ASCSU | 1, ., 2, ., 4, ., 1 | 0.5158 | 0.9419 | 0.8721 | N/A | no |
| P29804 | ODPA_PIG | 1, ., 2, ., 4, ., 1 | 0.5128 | 0.9143 | 0.8508 | yes | no |
| P35486 | ODPA_MOUSE | 1, ., 2, ., 4, ., 1 | 0.5128 | 0.9143 | 0.8487 | yes | no |
| Q54C70 | ODPA_DICDI | 1, ., 2, ., 4, ., 1 | 0.6057 | 0.8535 | 0.8196 | yes | no |
| O13366 | ODPA_KLULA | 1, ., 2, ., 4, ., 1 | 0.5537 | 0.8591 | 0.7548 | yes | no |
| Q8H1Y0 | ODPA2_ARATH | 1, ., 2, ., 4, ., 1 | 0.8227 | 0.9834 | 0.9058 | yes | no |
| P52900 | ODPA_SMIMA | 1, ., 2, ., 4, ., 1 | 0.5657 | 0.8314 | 0.8292 | N/A | no |
| P52901 | ODPA1_ARATH | 1, ., 2, ., 4, ., 1 | 0.8384 | 0.9779 | 0.9100 | no | no |
| P52902 | ODPA_PEA | 1, ., 2, ., 4, ., 1 | 0.8654 | 0.9419 | 0.8589 | N/A | no |
| P52903 | ODPA_SOLTU | 1, ., 2, ., 4, ., 1 | 0.8073 | 0.9723 | 0.9002 | N/A | no |
| O31404 | ACOA_BACSU | 1, ., 1, ., 1, ., - | 0.3779 | 0.8093 | 0.8798 | yes | no |
| Q4UKQ6 | ODPA_RICFE | 1, ., 2, ., 4, ., 1 | 0.4653 | 0.8232 | 0.9141 | yes | no |
| O66112 | ODPA_ZYMMO | 1, ., 2, ., 4, ., 1 | 0.4831 | 0.8011 | 0.8192 | yes | no |
| P16387 | ODPA_YEAST | 1, ., 2, ., 4, ., 1 | 0.5462 | 0.8784 | 0.7571 | yes | no |
| Q10489 | ODPA_SCHPO | 1, ., 2, ., 4, ., 1 | 0.5538 | 0.8867 | 0.7848 | yes | no |
| A7MB35 | ODPA_BOVIN | 1, ., 2, ., 4, ., 1 | 0.5186 | 0.9143 | 0.8487 | yes | no |
| Q68XA9 | ODPA_RICTY | 1, ., 2, ., 4, ., 1 | 0.4628 | 0.8038 | 0.8926 | yes | no |
| Q9R9N5 | ODPA_RHIME | 1, ., 2, ., 4, ., 1 | 0.5050 | 0.8149 | 0.8477 | yes | no |
| P26284 | ODPA_RAT | 1, ., 2, ., 4, ., 1 | 0.5189 | 0.8977 | 0.8333 | yes | no |
| Q92IS3 | ODPA_RICCN | 1, ., 2, ., 4, ., 1 | 0.4664 | 0.8093 | 0.8987 | yes | no |
| Q9ZDR4 | ODPA_RICPR | 1, ., 2, ., 4, ., 1 | 0.4747 | 0.8011 | 0.8895 | yes | no |
| P27745 | ACOA_CUPNH | 1, ., 1, ., 1, ., - | 0.3476 | 0.8232 | 0.8948 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| PLN02269 | 362 | PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp | 0.0 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E | 1e-155 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 1e-149 | |
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph | 1e-145 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena | 1e-127 | |
| PLN02374 | 433 | PLN02374, PLN02374, pyruvate dehydrogenase (acetyl | 5e-79 | |
| CHL00149 | 341 | CHL00149, odpA, pyruvate dehydrogenase E1 componen | 2e-77 | |
| TIGR03181 | 341 | TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E | 3e-60 | |
| TIGR00239 | 929 | TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas | 6e-08 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 4e-04 | |
| cd02012 | 255 | cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami | 5e-04 | |
| COG0567 | 906 | COG0567, SucA, 2-oxoglutarate dehydrogenase comple | 6e-04 | |
| COG3959 | 243 | COG3959, COG3959, Transketolase, N-terminal subuni | 0.002 |
| >gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Score = 728 bits (1880), Expect = 0.0
Identities = 279/328 (85%), Positives = 303/328 (92%)
Query: 33 DTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92
T P+TIET VPF H C+ PSR+VET+ +EL+ FFR M MRRMEIAADSLYKAKL+RG
Sbjct: 1 STDPITIETPVPFKGHLCDPPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRG 60
Query: 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGK 152
FCHLYDGQEAVA+GMEA ITK+D+IITAYRDHCT LGRGGT+LEVF+ELMGRKDGCS GK
Sbjct: 61 FCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGK 120
Query: 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212
GGSMHFYKKD+ FYGGHGIVGAQ+PLG GLAFAQKY+K+E V FALYGDGAANQGQLFEA
Sbjct: 121 GGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180
Query: 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272
LNIAALWDLP I VCENNHYGMGTAEWRAAKSP+YYKRGDYVPGLKVDGMD LAVKQACK
Sbjct: 181 LNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACK 240
Query: 273 FAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332
FAKEHAL NGP++LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIER+RKL+LAH+
Sbjct: 241 FAKEHALSNGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHE 300
Query: 333 LATEKELKDIEKEVRKEVDDAIAKAKEG 360
LATE ELKDIEKE+RKEVDDA+AKAKE
Sbjct: 301 LATEAELKDIEKEIRKEVDDAVAKAKES 328
|
Length = 362 |
| >gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 438 bits (1129), Expect = e-155
Identities = 158/303 (52%), Positives = 208/303 (68%), Gaps = 5/303 (1%)
Query: 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120
+ELL +R M +RR E A LY + GFCHLY GQEAVA+G+ A + D +IT+
Sbjct: 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60
Query: 121 YRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGC 180
YRDH L RG EV +EL GR+ GCS GKGGSMH + ++ FYGGHGIVGAQ+PL
Sbjct: 61 YRDHGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120
Query: 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR 240
GLAFA KY ++ VT +GDGAANQGQ +E+ N+AALW LP I V ENN Y MGTA R
Sbjct: 121 GLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTAVER 180
Query: 241 AAKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297
++ YKRG+ +PG +VDGMD LAV++A K A E A GP++LEM TYR+ GHS
Sbjct: 181 SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240
Query: 298 MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKA 357
MSDP YR+++E+ R +RDPIE+++ ++ +A+E+ELK+I+KEVR EV++A+ A
Sbjct: 241 MSDPAK-YRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFA 298
Query: 358 KEG 360
+
Sbjct: 299 ENS 301
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315 |
| >gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
Score = 424 bits (1091), Expect = e-149
Identities = 162/296 (54%), Positives = 213/296 (71%), Gaps = 5/296 (1%)
Query: 69 RQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFL 128
+M T+RRME A D+LY+ K +RGFCHLY GQEA+ +G+ A + D +I YRDH L
Sbjct: 1 YRMMTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLL 60
Query: 129 GRGGTLLEVFSELMGRKDGCSHGKGGSMHFY--KKDSGFYGGHGIVGAQIPLGCGLAFAQ 186
RG +L +V +EL G + GCS GKGGSMH Y K++ FYGG+GIVGAQ+PLG G+A A
Sbjct: 61 ARGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAA 120
Query: 187 KYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246
KY + V L+GDGA NQGQ FEALN AALW LP I VCENN Y + T R++ S +
Sbjct: 121 KYRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAERSSASTT 180
Query: 247 YYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303
Y RG +PG++VDGMD LAV QA KFA E A NGP ++E+ TYRY GHSMSD S
Sbjct: 181 YADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHSMSDDPS 240
Query: 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359
TYRTR+E+ VR+++DPI+R++K +++ + +E+ELK+IEKEVRKE+++A+ KA+
Sbjct: 241 TYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEEAVKKAES 296
|
This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303 |
| >gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Score = 411 bits (1059), Expect = e-145
Identities = 131/294 (44%), Positives = 174/294 (59%), Gaps = 4/294 (1%)
Query: 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCT 126
+R M +RR + LY+ + GF HL GQEAVA+G+ A + D + YRDH
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60
Query: 127 FLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQ 186
L RG L E+ +EL G++ G G+GGSMH K+ F+GG+GIVG Q+PL G A A
Sbjct: 61 ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120
Query: 187 KYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246
KY ++ V +GDGA N+G EALN AALW LP I VCENN Y + T R S
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTS 180
Query: 247 YYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303
R +PG++VDG D LAV +A K A E A GP ++E TYR GHS SD S
Sbjct: 181 IADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240
Query: 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKA 357
YRT++E+ ++RDPI R+RK ++ + TE+EL IE EV+ EV++A+ A
Sbjct: 241 RYRTKEEVEE-WKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293 |
| >gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 368 bits (947), Expect = e-127
Identities = 134/314 (42%), Positives = 181/314 (57%), Gaps = 6/314 (1%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + + +ELL +R M +RR + L + + GF HLY GQEAV +G A
Sbjct: 16 ELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAA 75
Query: 111 IT-KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGH 169
+ +D I YRDH L RG L E+ +EL+G+ G G+GGSMH+ K+ GF GG
Sbjct: 76 LRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGS 135
Query: 170 GIVGAQIPLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE 228
GIVG QIPL G A A KY + V A +GDGA NQG EALN AA+W LP + V E
Sbjct: 136 GIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIE 195
Query: 229 NNHYGMGTAEWRAAKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMI 285
NN Y + R + R +PG++VDG D LAV +A K A E A GP +
Sbjct: 196 NNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTL 255
Query: 286 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKE 345
+E TYRY GHS SD S YR+++E+ + +RDPI R+RK ++ + +E+EL+ IE E
Sbjct: 256 IEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAE 314
Query: 346 VRKEVDDAIAKAKE 359
+ EVD+A+ A+
Sbjct: 315 AKAEVDEAVEFAEA 328
|
Length = 358 |
| >gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Score = 248 bits (634), Expect = 5e-79
Identities = 127/311 (40%), Positives = 179/311 (57%), Gaps = 14/311 (4%)
Query: 60 TPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
T +E L + M R E + A Y+ K+ GF HLY+GQEAV+ G + K DS++
Sbjct: 84 TREEGLELYEDMVLGRSFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLKKDDSVV 142
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
+ YRDH L +G V SEL G+ GC G+GGSMH + K+ GG +G IP+
Sbjct: 143 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 202
Query: 179 GCGLAFAQKYSKD-------ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231
G AF+ KY ++ + VT A +GDG N GQ FE LN+AALW LP + V ENN
Sbjct: 203 ATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 262
Query: 232 YGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288
+ +G + RA P +K+G +PG+ VDGMD L V++ K A E A + GP ++E
Sbjct: 263 WAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 322
Query: 289 DTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRK 348
+TYR+ GHS++DP R E + RDPI ++K ++ + LATE ELK IEK++ +
Sbjct: 323 ETYRFRGHSLADP-DELRDPAEKAHY-AARDPIAALKKYLIENGLATEAELKAIEKKIDE 380
Query: 349 EVDDAIAKAKE 359
V+DA+ A
Sbjct: 381 VVEDAVEFADA 391
|
Length = 433 |
| >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 2e-77
Identities = 120/325 (36%), Positives = 180/325 (55%), Gaps = 27/325 (8%)
Query: 49 QCEAP---SRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVA 104
+ P S LL + M R E + A Y+ K+ GF HLY+GQEAV+
Sbjct: 4 KVNLPLTNSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMF-GFVHLYNGQEAVS 62
Query: 105 IGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSG 164
G+ + + D + + YRDH L +G V +EL G++ GCS G+GGSMH +
Sbjct: 63 TGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHN 122
Query: 165 FYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQGQLFEALNIAA 217
F GG +G IP+ G AF Y + VT +GDG N GQ FE LN+A
Sbjct: 123 FLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAV 182
Query: 218 LWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAK 275
LW LP I V ENN + +G A R+ P +K+ + +PG++VDGMD LAV++ K A
Sbjct: 183 LWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAV 242
Query: 276 EHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE-----RDPIERIRKLIL 329
E A + +GP ++E TYR+ GHS++DP DE+ +++ RDPI++++ I+
Sbjct: 243 ERARQGDGPTLIEALTYRFRGHSLADP-------DELRSKQEKEAWVARDPIKKLKSYII 295
Query: 330 AHDLATEKELKDIEKEVRKEVDDAI 354
++LA++KEL I++EV+ E++ A+
Sbjct: 296 DNELASQKELNKIQREVKIEIEQAV 320
|
Length = 341 |
| >gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 196 bits (502), Expect = 3e-60
Identities = 88/302 (29%), Positives = 149/302 (49%), Gaps = 16/302 (5%)
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
+ +EL+ +R M RR + A +L + +L G GQEA +G + K D +
Sbjct: 22 SDEELVELYRDMVLTRRFDTKALALQRQGRL--GTYAPNLGQEAAQVGSALALRKDDWVF 79
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
+YRDH L RG L+E+ G + G + + + +G Q
Sbjct: 80 PSYRDHAAMLARGVPLVEILLYWRGDERGS---------WDPEGVNILPPNIPIGTQYLH 130
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
G+A+A K ++ V +GDG ++G +EALN A ++ P + +NN + +
Sbjct: 131 AAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPR 190
Query: 239 WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHG 295
+ +P+ ++ +PG++VDG D LAV K A E A GP ++E TYR
Sbjct: 191 SKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGP 250
Query: 296 HSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIA 355
H+ +D + YRT++E +++DPI R+RK + L E++ + +E+E EV +A+A
Sbjct: 251 HTTADDPTRYRTKEEEE-EWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVA 309
Query: 356 KA 357
+A
Sbjct: 310 EA 311
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341 |
| >gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 189 SKDETVTFA--LYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGT--AEWR 240
S + T A ++GD A A QG + E LN++ L I + NN G T + R
Sbjct: 338 SPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDAR 397
Query: 241 AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299
+ S + P V+ D AV A + A E+ + +++ YR HGH+ +
Sbjct: 398 STPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEA 457
Query: 300 DPGSTYRTRDEI-SGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358
D S T+ + +++ P + +++ +ATE+++ ++ R ++ A
Sbjct: 458 DEPSA--TQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVP 515
Query: 359 EGRQ 362
R+
Sbjct: 516 SWRE 519
|
The 2-oxoglutarate dehydrogenase complex consists of this thiamine pyrophosphate-binding subunit (E1), dihydrolipoamide succinyltransferase (E2), and lipoamide dehydrogenase (E3). The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase [Energy metabolism, TCA cycle]. Length = 929 |
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 141 LMGRKDGCSHG--KGGSMHFYKKDSG----FYGGHGIVGAQIPLGCGLAFAQKYSKDETV 194
L GR+D GG F K+ F GH I G+A A+ +
Sbjct: 42 LTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHS--STSISAALGMAVARDLKGKKRK 99
Query: 195 TFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
A+ GDGA G FEALN A I++ +N
Sbjct: 100 VIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDN 135
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195 |
| >gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILV 226
G G+ + G+A A+K + + L GDG +G ++EA + A + L I +
Sbjct: 108 GQGL-----SVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAI 162
Query: 227 CENNHYGMGTAEWRAAKSPSYYKR----GDYVPGLKVDGMDALAVKQACKFAKEHALKNG 282
++N + + K+ G V ++VDG D + A + AK+ K
Sbjct: 163 VDSNRIQIDGPTDDILFTEDLAKKFEAFGWNV--IEVDGHDVEEILAALEEAKKSKGK-- 218
Query: 283 PMILEMDTYRYHG 295
P ++ T + G
Sbjct: 219 PTLIIAKTIKGKG 231
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255 |
| >gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 22/194 (11%)
Query: 185 AQKYSKDE----TVTFALYGDGA-ANQGQLFEALNIAALWDL---PAILVCENNHYGMGT 236
Q D + ++GD A A QG + E LN++ L + NN G T
Sbjct: 314 KQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTT 373
Query: 237 --AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMDTYRY 293
A+ R+ + + P V+ D AV A A E+ +++++ YR
Sbjct: 374 SPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRR 433
Query: 294 HGHS-MSDPGST----YRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRK 348
HGH+ +P T Y+ +++ + ++A + +E+E ++ + R
Sbjct: 434 HGHNEGDEPSVTQPLMYQK------IKKHPTVRKLYADKLIAEGVISEEEADELVNDYRD 487
Query: 349 EVDDAIAKAKEGRQ 362
+D KE ++
Sbjct: 488 ALDQGFEVVKEYKE 501
|
Length = 906 |
| >gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA---LWDLPAI 224
G G+ + G+A K + + GDG ++GQ++EA AA L +L AI
Sbjct: 122 GQGL-----SVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAI 176
Query: 225 L 225
+
Sbjct: 177 V 177
|
Length = 243 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 100.0 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 100.0 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 100.0 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 100.0 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 100.0 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 100.0 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 100.0 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 100.0 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 100.0 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 100.0 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| KOG0450 | 1017 | consensus 2-oxoglutarate dehydrogenase, E1 subunit | 99.97 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydro | 99.96 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 99.96 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 99.91 | |
| PRK12754 | 663 | transketolase; Reviewed | 99.91 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.91 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 99.9 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.9 | |
| PTZ00089 | 661 | transketolase; Provisional | 99.9 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.89 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 99.88 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.88 | |
| PRK12753 | 663 | transketolase; Reviewed | 99.88 | |
| PLN02790 | 654 | transketolase | 99.88 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.85 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.85 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 99.84 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.84 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 99.84 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.84 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.81 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 99.78 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 99.78 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 99.77 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 99.76 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.75 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 99.74 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.73 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.73 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.71 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.71 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 99.7 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.7 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 99.68 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.68 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.67 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 99.67 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.67 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.66 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.66 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.65 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.64 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.64 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.64 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 99.63 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.62 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.62 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 99.62 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.61 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 99.6 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 99.58 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 99.58 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 99.58 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.58 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.57 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 99.56 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 99.56 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 99.55 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.55 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 99.55 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.55 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 99.55 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 99.55 | |
| PRK07586 | 514 | hypothetical protein; Validated | 99.54 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 99.54 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.54 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 99.53 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 99.53 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 99.53 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 99.52 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.52 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 99.52 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 99.52 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 99.52 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 99.52 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 99.51 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 99.51 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 99.5 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 99.5 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 99.5 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 99.5 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 99.5 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.5 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 99.5 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 99.5 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.49 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 99.49 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 99.49 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.49 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.49 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 99.48 | |
| PLN02573 | 578 | pyruvate decarboxylase | 99.48 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 99.48 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 99.48 | |
| PLN02470 | 585 | acetolactate synthase | 99.48 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 99.47 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.46 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.46 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 99.45 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.45 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 99.45 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.43 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.43 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 99.42 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 99.42 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.42 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 99.42 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 99.42 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 99.41 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 99.38 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.35 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 99.24 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 99.24 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 99.16 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 99.16 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.12 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 99.08 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 98.83 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 98.68 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 98.56 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 98.55 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 98.25 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 97.97 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 97.57 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 97.52 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 97.16 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 97.1 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 96.14 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 96.12 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.08 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 96.03 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 95.69 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 95.68 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 95.17 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 94.93 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 94.83 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 94.65 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 94.5 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 94.09 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 93.94 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 93.41 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 92.22 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 92.21 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 92.18 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 91.92 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 91.6 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 91.33 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 90.63 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 90.57 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 90.53 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 90.47 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 90.46 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 90.25 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 90.17 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 89.9 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 89.89 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 89.84 | |
| PRK07586 | 514 | hypothetical protein; Validated | 89.72 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 89.65 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 89.64 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 89.58 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 89.54 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 89.53 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 89.48 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 89.4 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 89.37 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 89.32 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 89.21 | |
| PLN02470 | 585 | acetolactate synthase | 89.07 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 89.05 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 88.94 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 88.88 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 88.75 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 88.71 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 88.7 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 88.51 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 88.47 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 88.47 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 88.18 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 88.14 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 88.12 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 88.07 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 88.04 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 87.71 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 87.19 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 87.14 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 87.03 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 86.91 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 86.61 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 86.59 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 86.51 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 86.36 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 86.15 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 86.01 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 85.56 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 85.48 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 85.23 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 85.22 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 84.93 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 84.92 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 84.91 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 84.49 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 83.77 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 83.69 | |
| PLN02573 | 578 | pyruvate decarboxylase | 83.53 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 83.37 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 83.0 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 82.92 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 82.13 | |
| PTZ00089 | 661 | transketolase; Provisional | 81.53 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 81.52 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 81.25 | |
| PRK12753 | 663 | transketolase; Reviewed | 80.32 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 80.29 |
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-103 Score=739.59 Aligned_cols=344 Identities=64% Similarity=1.059 Sum_probs=326.1
Q ss_pred cccccccccccCCCCCC--CCcceeeeCCCCcccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 018037 16 ILKPLTNSFLLHRPIST--DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92 (362)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~g 92 (362)
++.|+..+..+++...+ ..++++++++ ||+.|++|+ |++...+|+|+++++|++|+++|+||.++++||++++|+|
T Consensus 11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~-~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRG 89 (394)
T KOG0225|consen 11 LLRPLAQAPPSRTLVNTRLVPSDVTFESS-PFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRG 89 (394)
T ss_pred hhchhhhcCccchhhccccCccccccccc-ceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhce
Confidence 55555544322222222 4566777766 999999998 9999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccc
Q 018037 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172 (362)
Q Consensus 93 f~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~l 172 (362)
|||+|+||||++||+.++|++.|.||++||||++.+.+|.++.++|+||+|+.+|+++|+|||||++.+ +|||++|||
T Consensus 90 FCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIV 167 (394)
T KOG0225|consen 90 FCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIV 167 (394)
T ss_pred eeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred cchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcC
Q 018037 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252 (362)
Q Consensus 173 G~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~ 252 (362)
|+|+|+++|+|||.||++.+.++++++|||++||||++|++|||++|+||+||||+||+|||+|+.++.+..|+|++||.
T Consensus 168 GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~ 247 (394)
T KOG0225|consen 168 GAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGD 247 (394)
T ss_pred ccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHc
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~ 331 (362)
.|||++|||+|+++|++|.++|++|+++ +||+++|+.|||++|||++||+++||++||+++.|++||||..++++|++.
T Consensus 248 yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~ 327 (394)
T KOG0225|consen 248 YIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIEL 327 (394)
T ss_pred CCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHh
Confidence 7999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 332 DLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 332 g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
+++|++||++|+++++++||+++++|+++|+
T Consensus 328 ~late~ELKai~k~irkeVdeav~~A~~~p~ 358 (394)
T KOG0225|consen 328 GLATEEELKAIDKEIRKEVDEAVAFATASPE 358 (394)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999986
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-89 Score=667.53 Aligned_cols=306 Identities=43% Similarity=0.724 Sum_probs=294.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCC-CEEEcCchhHHHHHHcCCC
Q 018037 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGT 133 (362)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~-D~v~~~yR~h~~~l~rG~~ 133 (362)
....+++++|+++|++|+++|+||+++.+|+++|+|.||||++.||||++||+..+|+++ ||++++||+|+++|++|+|
T Consensus 20 ~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~ 99 (358)
T COG1071 20 PNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVP 99 (358)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCC
Confidence 445799999999999999999999999999999999999999999999999999999966 9999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCC-eEEEEeCCcccccchHHHH
Q 018037 134 LLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEA 212 (362)
Q Consensus 134 ~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~-vvv~~~GDGa~~~G~~~Ea 212 (362)
+.++|++++|+.+|+|+|||||||+++++.|+++.+++||+|+|+|+|+|+|.||++.+. |++|++|||+++||+|||+
T Consensus 100 ~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa 179 (358)
T COG1071 100 LKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA 179 (358)
T ss_pred HHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999555 9999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 213 ln~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
||||++|+|||||||+||+|+||++...++..+.++.|+ ||+|+++|||||+.+|++++++|++++|+ +||+|||+.
T Consensus 180 lN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 180 LNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred HHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999999999999999999998888777666677665 99999999999999999999999999999 899999999
Q ss_pred EecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 290 tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
|||+.|||++||+++||+++|+++|+ .+|||.++|++|++.|+||++++++|+++++++|++|+++|+++|
T Consensus 260 tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p 330 (358)
T COG1071 260 TYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASP 330 (358)
T ss_pred EeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999988999999999998 599999999999999999999999999999999999999999997
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-84 Score=637.51 Aligned_cols=310 Identities=86% Similarity=1.388 Sum_probs=300.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCC
Q 018037 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (362)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~ 132 (362)
|.....+|+++|+++||+|+++|.||+++.+++++|+|.||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 21 ~~~~~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~ 100 (362)
T PLN02269 21 PSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGG 100 (362)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCC
Confidence 43345889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHH
Q 018037 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (362)
Q Consensus 133 ~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ea 212 (362)
++..+|+|++|+.+|+|+|||||||+++++.||++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+
T Consensus 101 ~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ea 180 (362)
T PLN02269 101 TVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180 (362)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 213 ln~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
||+|+.|+||+||||+||+|+++|+..++...++|+.+++++|+++|||+|+++|+++++.|++++|++||+|||+.|||
T Consensus 181 ln~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR 260 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYR 260 (362)
T ss_pred HHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 99999999999999999999999998888888899999999999999999999999999999999988889999999999
Q ss_pred CCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
++|||++||+.+||+++|+++|++++|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.
T Consensus 261 ~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~ 330 (362)
T PLN02269 261 YHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPM 330 (362)
T ss_pred CCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999998789999999999866999999999999999999999999999999999999999999884
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=603.49 Aligned_cols=308 Identities=38% Similarity=0.693 Sum_probs=295.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCC
Q 018037 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (362)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~ 132 (362)
+.+...+|+|+++++|++|+++|.||+++.+++++|+|.||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~ 90 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGV 90 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCC
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCC-------CCCeEEEEeCCcccc
Q 018037 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (362)
Q Consensus 133 ~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~-------~~~vvv~~~GDGa~~ 205 (362)
++.++|+|++|+++|+++|||||||+++++.++++.+|+||+++|+|+|+|+|.|+++ ++++|||++|||+++
T Consensus 91 ~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 170 (341)
T CHL00149 91 PPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN 170 (341)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh
Confidence 9999999999999999999999999999999999999999999999999999999887 589999999999999
Q ss_pred cchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CC
Q 018037 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~g 282 (362)
+|++||+||+|++|+||+||||+||+|+++++...++..++|++++ ||+++++|||+|+++|+++++.|++++|+ ++
T Consensus 171 ~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~g 250 (341)
T CHL00149 171 NGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDG 250 (341)
T ss_pred hcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999877776678898865 99999999999999999999999999999 99
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 283 P~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
|+|||+.|||+.|||++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|+
T Consensus 251 P~lIev~tyR~~gHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~ 328 (341)
T CHL00149 251 PTLIEALTYRFRGHSLADPD-ELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPE 328 (341)
T ss_pred CEEEEEEEecCCCcCCCCCc-cCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999987 699999999998 6999999999999999999999999999999999999999999985
|
|
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-78 Score=603.99 Aligned_cols=308 Identities=41% Similarity=0.730 Sum_probs=295.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCC
Q 018037 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (362)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~ 132 (362)
|...+.+++|+++++|++|+++|.||+++.++|++|++.||+|++.||||++||++++|+++||++++||+|+++|++|+
T Consensus 77 ~~~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~ 156 (433)
T PLN02374 77 SASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGV 156 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCC-------CCCeEEEEeCCcccc
Q 018037 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (362)
Q Consensus 133 ~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~-------~~~vvv~~~GDGa~~ 205 (362)
++.++|+|++|+++|+++|+|||||+++++.|+++.+++||+++|+|+|+|+|.|+++ +++++||++|||+++
T Consensus 157 ~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 236 (433)
T PLN02374 157 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCN 236 (433)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999999999999999999999999875 488999999999999
Q ss_pred cchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CC
Q 018037 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~g 282 (362)
+|+|||+||+|++|+||+||||+||+|+++++...++..+++++++ ||+++++|||+|+++|++++++|++++|+ ++
T Consensus 237 eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~g 316 (433)
T PLN02374 237 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEG 316 (433)
T ss_pred cChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999888777778888864 99999999999999999999999999999 99
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 283 P~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
|+|||+.|||+.|||++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.
T Consensus 317 P~LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~ 394 (433)
T PLN02374 317 PTLVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPL 394 (433)
T ss_pred CEEEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999987 699999999998 6999999999999999999999999999999999999999999874
|
|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-78 Score=586.09 Aligned_cols=300 Identities=52% Similarity=0.911 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHH
Q 018037 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSE 140 (362)
Q Consensus 61 ~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lae 140 (362)
+|+|+++||+|+++|.||+++.+++++|++.||+|++.||||++||++.+|+++||++++||+|+++|++|+++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCC
Q 018037 141 LMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD 220 (362)
Q Consensus 141 l~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~ 220 (362)
++|+++|+|+|||||||+++++.|+++.+|+||+++|+|+|+|+|.|++++++++||++|||++++|.+||+||+|++|+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 018037 221 LPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (362)
Q Consensus 221 LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs 297 (362)
||+||||+||+|+++++...+...++|++++ ||+|+++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 9999999999999999887777778898864 99999999999999999999999999999 89999999999999999
Q ss_pred CCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 298 MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 298 ~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++|++.|.
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~ 303 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPE 303 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99987 699999999998 6999999999999999999999999999999999999999999884
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-75 Score=559.05 Aligned_cols=290 Identities=45% Similarity=0.758 Sum_probs=280.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCC
Q 018037 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKD 146 (362)
Q Consensus 67 ~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~ 146 (362)
+||+|+++|.||+++.+++++|++.||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEE
Q 018037 147 GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (362)
Q Consensus 147 g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfV 226 (362)
|+++|+|||||+++++.++++.+|+||+++|+|+|+|+|.|+.++++++||++|||++++|.++|+||+|+.|+||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCC
Q 018037 227 CENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303 (362)
Q Consensus 227 v~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~ 303 (362)
|+||+|+++++.......++|..++ ||+++++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||++|+++
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 9999999999887766678888854 99999999999999999999999999999 99999999999999999998888
Q ss_pred CCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018037 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKA 357 (362)
Q Consensus 304 ~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A 357 (362)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999997 69999999999999999999999999999999999999875
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=559.45 Aligned_cols=292 Identities=39% Similarity=0.642 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCC
Q 018037 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCS 149 (362)
Q Consensus 70 ~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~ 149 (362)
+|+++|+||+.+..++..+++.||+|++.||||+++|+..+|+++|+|+++||+|+++|++|+++.++|+|++|+..+.+
T Consensus 2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~ 81 (300)
T PF00676_consen 2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG 81 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence 46677777777777777777889999999999999999999999999999999999999999999999999999996555
Q ss_pred CCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEc
Q 018037 150 HGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (362)
Q Consensus 150 ~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~N 229 (362)
+|+. ++|+..++.++++.++++|.++|+|+|.|+|.|+++.+.++||++|||+++||.|||+||+|++|+|||||||+|
T Consensus 82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveN 160 (300)
T PF00676_consen 82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVEN 160 (300)
T ss_dssp TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred CCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEec
Confidence 5554 556667878899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 018037 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (362)
Q Consensus 230 N~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR 306 (362)
|+|+|+|+..+++..++++.+ +||+|+++|||+|+++|++++++|++++|+ +||+|||+.|||++|||++|+++.||
T Consensus 161 N~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr 240 (300)
T PF00676_consen 161 NQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYR 240 (300)
T ss_dssp ESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTS
T ss_pred CCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccC
Confidence 999999999998888888775 599999999999999999999999999999 99999999999999999999989999
Q ss_pred ChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
+++|++.|++.+|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.
T Consensus 241 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~ 296 (300)
T PF00676_consen 241 SPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPE 296 (300)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHB
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999998877899999999999999999999999999999999999999999874
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-72 Score=551.10 Aligned_cols=296 Identities=30% Similarity=0.493 Sum_probs=281.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHH
Q 018037 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (362)
Q Consensus 56 ~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~ 135 (362)
.+.+|+++++++||+|+++|.||+++.++|++|+| ||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~ 96 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLV 96 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHH
Confidence 35689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHH
Q 018037 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (362)
Q Consensus 136 ~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~ 215 (362)
.+|+|++|+.+|.+ +.++.|+++.+++||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+
T Consensus 97 ~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~t 167 (341)
T TIGR03181 97 EILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNF 167 (341)
T ss_pred HHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHH
Confidence 99999999887632 246679999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 216 A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
|++|+||+||||+||+|+++++.......++|.+++ ||+++++|||+|+.+|+++++.|++++++ ++|+|||+.|||
T Consensus 168 A~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R 247 (341)
T TIGR03181 168 AGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYR 247 (341)
T ss_pred HhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 999999999999999999998877666678898764 99999999999999999999999999999 999999999999
Q ss_pred CCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
+.|||++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|+
T Consensus 248 ~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~ 316 (341)
T TIGR03181 248 LGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPP 316 (341)
T ss_pred CCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999888899999999998 6999999999999999999999999999999999999999999985
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=469.40 Aligned_cols=309 Identities=30% Similarity=0.458 Sum_probs=295.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcC
Q 018037 52 APSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRG 131 (362)
Q Consensus 52 ~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG 131 (362)
.+++.+.+++|..++||++|+++..||.-+-+-.+||+| .|+..+.|+||+-+|.+++|.|.|.|++.||.-|+.|.||
T Consensus 76 ~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRg 154 (432)
T KOG1182|consen 76 DKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRG 154 (432)
T ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcC
Confidence 477889999999999999999999999998888899998 6999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCC-CeEEEEeCCcccccchHH
Q 018037 132 GTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE-TVTFALYGDGAANQGQLF 210 (362)
Q Consensus 132 ~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~-~vvv~~~GDGa~~~G~~~ 210 (362)
.++++++.+.+|+..+..+||+|++|+++++.||+..++++..|+|.|+|+|+|.|+.+++ +++||++|||++++|++|
T Consensus 155 ftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~H 234 (432)
T KOG1182|consen 155 FTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAH 234 (432)
T ss_pred ccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchh
Confidence 9999999999999999999999999999999999999999999999999999999977655 899999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEE
Q 018037 211 EALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILE 287 (362)
Q Consensus 211 Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe 287 (362)
.+||+|+....|+||+|-||+|+|+||.+.+..+..++.+| ||+..|+|||||+++||.|+++|.+.+-. +.|+|||
T Consensus 235 A~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliE 314 (432)
T KOG1182|consen 235 AAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIE 314 (432)
T ss_pred hhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhh
Confidence 99999999999999999999999999999888777777765 99999999999999999999999999988 8999999
Q ss_pred EEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 288 MDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 288 ~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
+.|||..+||+|||.+.||+.+|++.|.+.+.||.+||+++.++|+|+|+.-.++.++++++|-++++.|++-+
T Consensus 315 amtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~ 388 (432)
T KOG1182|consen 315 AMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKE 388 (432)
T ss_pred hhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998643
|
|
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=523.80 Aligned_cols=316 Identities=20% Similarity=0.259 Sum_probs=282.2
Q ss_pred CCcceeeeCC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHH
Q 018037 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (362)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (362)
.|.++.+|.. .-|...++|.+.. .+|+++++++|+.|+++|.||+++..+|..+++. ++.|||++.+
T Consensus 155 Ycg~ig~E~~hi~~~~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf----~~eG~Ea~i~ 228 (924)
T PRK09404 155 YCGSIGVEYMHISDPEERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF----SLEGGESLIP 228 (924)
T ss_pred hcccHhheeccCCCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc----cccchhhHHH
Confidence 4566655541 1599999996544 9999999999999999999999999999988875 4799999999
Q ss_pred HHHh------cCCCCCEEEc-CchhHHHHHHc--CCCHHHHHHHHhCCC-------CCCCC----------CCCCccCCc
Q 018037 106 GMEA------GITKKDSIIT-AYRDHCTFLGR--GGTLLEVFSELMGRK-------DGCSH----------GKGGSMHFY 159 (362)
Q Consensus 106 g~~~------~l~~~D~v~~-~yR~h~~~l~r--G~~~~~~lael~g~~-------~g~~~----------Grggs~H~~ 159 (362)
|+.. +++++|+|++ +||||+++|++ |+|+.++|+|++|+. +|.++ |+||+||+.
T Consensus 229 gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~ 308 (924)
T PRK09404 229 MLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLS 308 (924)
T ss_pred HHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEee
Confidence 9988 6668999999 69999999994 999999999999997 44444 666677765
Q ss_pred cCCCCcccCCccccchhHHHHHHHHHHhhCCCC------CeEEEEeCCccc-ccchHHHHHHHHHhCCCC---eEEEEEc
Q 018037 160 KKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE------TVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCEN 229 (362)
Q Consensus 160 ~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~------~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LP---vIfVv~N 229 (362)
.. .+.+++|.+.|+|+|.|+|.|+++.+ .++|+++||||+ +||.|||+||+|++|+|| +||||+|
T Consensus 309 l~-----~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveN 383 (924)
T PRK09404 309 LA-----FNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVIN 383 (924)
T ss_pred cc-----CCccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe
Confidence 43 25699999999999999999998877 799999999997 899999999999999998 9999999
Q ss_pred CCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 018037 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (362)
Q Consensus 230 N~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR 306 (362)
|+||++|+...+.+.+....+ +||+|+++|||+|+++|+++++.|++++|+ +||+|||+.|||++|||++|++ .||
T Consensus 384 Nq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p-~yr 462 (924)
T PRK09404 384 NQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEP-SFT 462 (924)
T ss_pred CCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCC-cCC
Confidence 999999998877655555554 599999999999999999999999999999 9999999999999999999998 499
Q ss_pred ChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018037 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEG 360 (362)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~ 360 (362)
+|+|++.|++.+||+.+|+++|+++|++|++|+++|+++++++|++|+++|++.
T Consensus 463 ~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~ 516 (924)
T PRK09404 463 QPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW 516 (924)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998778999999999999999999999999999999999999999864
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=468.32 Aligned_cols=323 Identities=19% Similarity=0.230 Sum_probs=283.9
Q ss_pred CCcceeeeCC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHH
Q 018037 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (362)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (362)
.|.++-+|.- .-|.+.++|.+. ...+|+++.+++++.|+.+-.||.++...|...|-.| -.|-|+...
T Consensus 154 YCg~ig~E~~hi~~~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip 228 (929)
T TIGR00239 154 YCGSIGAEYMHITSTEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFS----LEGLDALVP 228 (929)
T ss_pred hcCcceeeeecCCCHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceee----cccHHHHHH
Confidence 4566655542 149999999765 7899999999999999999999999999887654322 579998877
Q ss_pred HHHhcCC------CCCEEEcC-chhHHHHHH--cCCCHHHHHHHHhCCCCC-CCCCCCCc-cCCcc-----------CCC
Q 018037 106 GMEAGIT------KKDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKDG-CSHGKGGS-MHFYK-----------KDS 163 (362)
Q Consensus 106 g~~~~l~------~~D~v~~~-yR~h~~~l~--rG~~~~~~lael~g~~~g-~~~Grggs-~H~~~-----------~~~ 163 (362)
++...++ .+|+|+++ ||||...|+ +|+|+..+|+|+.|+..+ .+.|+|++ +|++. .+.
T Consensus 229 ~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~ 308 (929)
T TIGR00239 229 MLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHL 308 (929)
T ss_pred HHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCccee
Confidence 7655543 68999997 999999999 999999999999998776 45689998 99984 345
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC------CCeEEEEeCCccc-ccchHHHHHHHHHhCCCCe---EEEEEcCCcc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD------ETVTFALYGDGAA-NQGQLFEALNIAALWDLPA---ILVCENNHYG 233 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~------~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPv---IfVv~NN~~g 233 (362)
++.+++|+++.+.|+|+|.|+|.|+++. +.++||++||||+ +||.|||+||+|++|+||+ ||||+||+||
T Consensus 309 ~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg 388 (929)
T TIGR00239 309 ALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG 388 (929)
T ss_pred eecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE
Confidence 6789999999999999999999998765 5799999999995 8999999999999999997 9999999999
Q ss_pred cccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhh
Q 018037 234 MGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDE 310 (362)
Q Consensus 234 i~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e 310 (362)
++|+...+.+.+....+ +||+|+++|||+|+++|+.+++.|++++|+ +||+|||+.|||++|||++|++..||+ +|
T Consensus 389 ~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~ 467 (929)
T TIGR00239 389 FTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LM 467 (929)
T ss_pred EEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HH
Confidence 99987766655555544 599999999999999999999999999999 999999999999999999999977886 88
Q ss_pred HHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 311 ISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
++.|++.+||+.+|+++|+++|++|++++++|+++++++|++|++.++..|
T Consensus 468 ~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~ 518 (929)
T TIGR00239 468 YQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWR 518 (929)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999986789999999999999999999999999999999999999987654
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-51 Score=383.51 Aligned_cols=230 Identities=22% Similarity=0.283 Sum_probs=205.6
Q ss_pred HHHHHHHHHhccccccccccCcchHHHHHHHHhcCCC------CCEEEcC-chhHHHHHH--cCCCHHHHHHHHhCCCC-
Q 018037 77 MEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK------KDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKD- 146 (362)
Q Consensus 77 ~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~------~D~v~~~-yR~h~~~l~--rG~~~~~~lael~g~~~- 146 (362)
||+.+...|...+- + ...|+|++.+++...|++ +|+++++ ||+|...|+ +|+|+.++|+|++|+.+
T Consensus 1 ~e~f~~~~f~~~kr---f-s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKR---F-GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeE---E-EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 57777776665332 2 289999999999999987 7999998 999999999 99999999999999887
Q ss_pred --CCCCCCCCccCCccCC-----------CCcccCCccccchhHHHHHHHHHHhhCC-----CCCeEEEEeCCccc-ccc
Q 018037 147 --GCSHGKGGSMHFYKKD-----------SGFYGGHGIVGAQIPLGCGLAFAQKYSK-----DETVTFALYGDGAA-NQG 207 (362)
Q Consensus 147 --g~~~Grggs~H~~~~~-----------~~~~~~~g~lG~~~p~A~G~A~A~k~~~-----~~~vvv~~~GDGa~-~~G 207 (362)
+.+.|++.++|++.+. .++.+++|+||.++|+|+|+|+|.|+++ .+.++|+++||||+ +||
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 5566777899998664 4578999999999999999999999998 47899999999995 799
Q ss_pred hHHHHHHHHHhCCCC---eEEEEEcCCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-C
Q 018037 208 QLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-N 281 (362)
Q Consensus 208 ~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~ 281 (362)
.|||+||+|++|+|| +||||+||+||++|+.+++++.+..+++ +||+|+++|||+|+++|++++++|++++|+ +
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~ 236 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFK 236 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 9999999999999999888777666665 499999999999999999999999999999 9
Q ss_pred CCEEEEEEEecCCCCCCCCCCCCCCChhhH
Q 018037 282 GPMILEMDTYRYHGHSMSDPGSTYRTRDEI 311 (362)
Q Consensus 282 gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~ 311 (362)
||+|||++|||++|||++|++ .||+|.+|
T Consensus 237 gp~lIe~~tYR~~GHse~D~p-~~t~p~my 265 (265)
T cd02016 237 KDVVIDLVCYRRHGHNELDEP-SFTQPLMY 265 (265)
T ss_pred CCEEEEEEEecCCCCCCcCCc-cccCCCcC
Confidence 999999999999999999998 59988753
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=318.27 Aligned_cols=309 Identities=20% Similarity=0.276 Sum_probs=259.1
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC------CCCEE
Q 018037 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~------~~D~v 117 (362)
.|.+.++|.| ...+|+++.+.+++++-..-.||.++...|-..|- | +-.|-|.+..-+...|. -+.++
T Consensus 477 ~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evv 550 (1228)
T PRK12270 477 RWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVV 550 (1228)
T ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEE
Confidence 5999999965 67789999999999999999999998887764432 1 24577766544444443 34577
Q ss_pred Ec-CchhHHHHHHc--CCCHHHHHHHHhCCCC-CCCCCCCCc-cCCccCC-----------CCcccCCccccchhHHHHH
Q 018037 118 IT-AYRDHCTFLGR--GGTLLEVFSELMGRKD-GCSHGKGGS-MHFYKKD-----------SGFYGGHGIVGAQIPLGCG 181 (362)
Q Consensus 118 ~~-~yR~h~~~l~r--G~~~~~~lael~g~~~-g~~~Grggs-~H~~~~~-----------~~~~~~~g~lG~~~p~A~G 181 (362)
|+ .|||+-..|+. |.+..++|.|+-|+-. +...|.|.. +|++... ..+..+.++|.+.-|+.-|
T Consensus 551 igm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleG 630 (1228)
T PRK12270 551 IGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEG 630 (1228)
T ss_pred ecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhh
Confidence 88 79999999986 9999999999999865 455677765 8886421 1234788999999999999
Q ss_pred HHHHHhhCC---C---CCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEEcCCcccccccccccCC---chHh
Q 018037 182 LAFAQKYSK---D---ETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKS---PSYY 248 (362)
Q Consensus 182 ~A~A~k~~~---~---~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t~~~~~~~~---~~~~ 248 (362)
++.|.|..- . ..+.|+++||++ .+||.++|+||+|.+|++| +||||.||++|++|+.....++ +|++
T Consensus 631 ivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~a 710 (1228)
T PRK12270 631 IVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVA 710 (1228)
T ss_pred hhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHH
Confidence 999987431 2 347899999999 7899999999999999999 8999999999999987754433 3443
Q ss_pred hhcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHH
Q 018037 249 KRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327 (362)
Q Consensus 249 ~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~ 327 (362)
+++++|+++|||+||++|..+++.|++|+++ ++|++||+.|||++||+++|+|+ |++|.+|+.+.+.+..-+.|++.
T Consensus 711 -k~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~ 788 (1228)
T PRK12270 711 -KMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEA 788 (1228)
T ss_pred -hhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHH
Confidence 4799999999999999999999999999999 99999999999999999999985 99999999887555556899999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018037 328 ILAHDLATEKELKDIEKEVRKEVDDAIAKAKEG 360 (362)
Q Consensus 328 L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~ 360 (362)
|+.+|.+|++|++++.++.+.++++++...++.
T Consensus 789 Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~ 821 (1228)
T PRK12270 789 LIGRGDITVEEAEQALRDYQGQLERVFNEVREA 821 (1228)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999888753
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=304.45 Aligned_cols=229 Identities=21% Similarity=0.210 Sum_probs=191.0
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC---CCCEEE--cCch
Q 018037 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT---KKDSII--TAYR 122 (362)
Q Consensus 48 ~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~---~~D~v~--~~yR 122 (362)
.+++.|.+...|+.++|.++-. .+|.+ .++..+++.||+|++.|+ +.++++.++. |.|+++ ++||
T Consensus 4 ~~~~~p~d~~~l~~~~l~~l~~---~ir~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr 73 (581)
T PRK12315 4 EKINSPADLKKLSLDELEQLAS---EIRTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQ 73 (581)
T ss_pred hhcCCHHHHhhCCHHHHHHHHH---HHHHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCc
Confidence 3566688888899888887743 45554 344557788999999999 4444555555 899999 9999
Q ss_pred hHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc
Q 018037 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (362)
Q Consensus 123 ~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG 202 (362)
+|++.|++|.++..++.+++|+.+|++++++ |.|.. ...|++|+++|+|+|+|+|.|+++.+.++||++|||
T Consensus 74 ~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG 145 (581)
T PRK12315 74 SYPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDG 145 (581)
T ss_pred hHHHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECch
Confidence 9999999999999999999999999999887 44422 256899999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCCCCeEEEEEcCCccccccccc---------ccCCchHhh--hcCCcceEEE-eCCCHHHHHHH
Q 018037 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR---------AAKSPSYYK--RGDYVPGLKV-DGMDALAVKQA 270 (362)
Q Consensus 203 a~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~---------~~~~~~~~~--~g~gi~g~~V-dG~D~~av~~a 270 (362)
++++|.+||+||+|+.|++|+||||+||+|+++++... .....+... .+||++++.| ||||+++++++
T Consensus 146 ~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a 225 (581)
T PRK12315 146 SLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEA 225 (581)
T ss_pred hhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHH
Confidence 99999999999999999999999999999999877641 112222222 4699999998 99999999999
Q ss_pred HHHHHHHhccCCCEEEEEEEecCCCCC
Q 018037 271 CKFAKEHALKNGPMILEMDTYRYHGHS 297 (362)
Q Consensus 271 ~~~A~~~ar~~gP~lIe~~tyR~~GHs 297 (362)
+++|.+. +||++|+++|||+.|..
T Consensus 226 ~~~a~~~---~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 226 FKEVKDI---DHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred HHHHHhC---CCCEEEEEEeecCCCCC
Confidence 9886542 89999999999999975
|
|
| >KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=257.09 Aligned_cols=310 Identities=20% Similarity=0.297 Sum_probs=259.7
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC------CCCEE
Q 018037 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~------~~D~v 117 (362)
-|...++|.| +...+|.|+.+-+|..+.+.-+||+++...|..-+-.| -.|.|...-|+...++ .++.|
T Consensus 232 nWir~k~EtP-~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~iv 306 (1017)
T KOG0450|consen 232 NWIRQKFETP-GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVESIV 306 (1017)
T ss_pred HHHHHhccCC-CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchheE
Confidence 4888888966 78899999999999999999999999999888655444 4788888778766655 46888
Q ss_pred Ec-CchhHHHHHHc--CCCHHHHHHHHhCCCCCCCCCCCCc-cCCcc----CC--------CCcccCCccccchhHHHHH
Q 018037 118 IT-AYRDHCTFLGR--GGTLLEVFSELMGRKDGCSHGKGGS-MHFYK----KD--------SGFYGGHGIVGAQIPLGCG 181 (362)
Q Consensus 118 ~~-~yR~h~~~l~r--G~~~~~~lael~g~~~g~~~Grggs-~H~~~----~~--------~~~~~~~g~lG~~~p~A~G 181 (362)
++ .|||+-..|+. -.|+.++|.|+-|.+. .--|.|.. +|++. +. ..+..+.+++.+.-|+.+|
T Consensus 307 iGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~-~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~G 385 (1017)
T KOG0450|consen 307 IGMPHRGRLNVLANVVRKPLEQIFSEFSGLEA-ADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMG 385 (1017)
T ss_pred ecCCccchhHHHHHHHhhHHHHHHHhccCCCC-CcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeec
Confidence 88 69999998875 5699999999998433 22366665 77752 11 1246889999999999999
Q ss_pred HHHHHhhC-----CCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEEcCCcccccccccccCC--chHhhh
Q 018037 182 LAFAQKYS-----KDETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKS--PSYYKR 250 (362)
Q Consensus 182 ~A~A~k~~-----~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t~~~~~~~~--~~~~~~ 250 (362)
-..|.++. +++...|.++||+| ++||.++|+|.+..+.++- .|+||.||+.|++|...-..++ +.-.++
T Consensus 386 KtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar 465 (1017)
T KOG0450|consen 386 KTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVAR 465 (1017)
T ss_pred hHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHH
Confidence 99998864 34568999999999 6899999999877665554 6999999999998865433322 222336
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHH
Q 018037 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLIL 329 (362)
Q Consensus 251 g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~ 329 (362)
..+.|.++||++|+++|.-+++-|.++... ++.++|++++||.+||++.|.| .|++|-+|+.+++.+..+..|.+.|+
T Consensus 466 ~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP-~FTQPlMYk~I~k~~~~l~~Y~ekLl 544 (1017)
T KOG0450|consen 466 VVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEP-MFTQPLMYKQIRKHKPVLQKYAEKLL 544 (1017)
T ss_pred HhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCc-cccchHHHHHHHcCCcHHHHHHHHHH
Confidence 789999999999999999999999999777 9999999999999999999988 49999999999988888999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018037 330 AHDLATEKELKDIEKEVRKEVDDAIAKAKEG 360 (362)
Q Consensus 330 ~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~ 360 (362)
++|.+|+.|+++..+.+....++|++.++..
T Consensus 545 ~egtvs~~evd~~~~k~~~I~eeafe~sKd~ 575 (1017)
T KOG0450|consen 545 SEGTVSQQEVDEEIKKYDNILEEAFERSKDY 575 (1017)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999764
|
|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=258.41 Aligned_cols=317 Identities=19% Similarity=0.214 Sum_probs=260.9
Q ss_pred CCcceeeeCC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHH
Q 018037 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (362)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (362)
.|.++-+|.. ..|.+.++|. ..+.++.|+.+.+++.+...--||..+...|...|-. .-.|-|+...
T Consensus 141 Ycgsig~E~~hi~~~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip 214 (906)
T COG0567 141 YCGSIGVEYMHISDPEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRF----SLEGGESLIP 214 (906)
T ss_pred hccceeeeeeccCCHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccc----cccchhhHHH
Confidence 4666655532 1599999997 7889999999999999999999999988877654332 2468888877
Q ss_pred HHHhcCC------CCCEEEc-CchhHHHHHH--cCCCHHHHHHHHhCCCCCCCCCCCCc-cCCccC-----C-----CCc
Q 018037 106 GMEAGIT------KKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGGS-MHFYKK-----D-----SGF 165 (362)
Q Consensus 106 g~~~~l~------~~D~v~~-~yR~h~~~l~--rG~~~~~~lael~g~~~g~~~Grggs-~H~~~~-----~-----~~~ 165 (362)
++...++ ..++|++ .|||+-..|. .|.|+..+|+|+.|.....- +.|+. +|++.. + ..+
T Consensus 215 ~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~-~sGDVKYH~G~~~~~~~~~~~v~l~L 293 (906)
T COG0567 215 MLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPD-LSGDVKYHLGFSSDRQTDGGKVHLSL 293 (906)
T ss_pred HHHHHHHHHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCC-cccccccccccccccccCCCeeEEEe
Confidence 7666554 4688999 7999999997 49999999999999654211 13443 666521 1 123
Q ss_pred ccCCccccchhHHHHHHHHHHhhCCC-----CCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEEcCCccccc
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQKYSKD-----ETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGT 236 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k~~~~-----~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t 236 (362)
..+.++|....|+..|.+.|.+.... ..+.|.++||.+ .+||.+.|+||+...-+.. .|+||.||+.|++|
T Consensus 294 a~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTT 373 (906)
T COG0567 294 AFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTT 373 (906)
T ss_pred cCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCC
Confidence 47889999999999999999875432 246789999999 6899999999999888876 59999999999998
Q ss_pred ccccccCCchHhh---hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHH
Q 018037 237 AEWRAAKSPSYYK---RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (362)
Q Consensus 237 ~~~~~~~~~~~~~---~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~ 312 (362)
+.... .++.|++ +..+.|.++|+|.||++|..+.+-|++++.+ +++++|++.|||.+||+++|.+ .+++|..++
T Consensus 374 sp~~s-RSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DeP-s~TqP~mY~ 451 (906)
T COG0567 374 SPADA-RSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEP-SVTQPLMYQ 451 (906)
T ss_pred Ccccc-cCCCCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccc-cccCHHHHH
Confidence 84332 2333443 4689999999999999999999999999888 9999999999999999999998 599999999
Q ss_pred hHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018037 313 GVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358 (362)
Q Consensus 313 ~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~ 358 (362)
.+++...+...|.+.|+++|++++++.+.++++++..++..+...+
T Consensus 452 ~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~ 497 (906)
T COG0567 452 KIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVK 497 (906)
T ss_pred HHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHh
Confidence 9998888999999999999999999999999999999998876654
|
|
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=244.24 Aligned_cols=308 Identities=19% Similarity=0.238 Sum_probs=241.5
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcC------CCCCEE
Q 018037 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGI------TKKDSI 117 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l------~~~D~v 117 (362)
.|...+.|. -+..++.+|++.++-+.|+.+..||..+...+.+-+--| ..|.|....=....| +.+|+|
T Consensus 140 ~W~a~nFE~-l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG----gEGAESM~aFF~eLl~~sa~~~ie~vi 214 (913)
T KOG0451|consen 140 EWLARNFET-LDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG----GEGAESMLAFFWELLRDSAQANIEHVI 214 (913)
T ss_pred HHHHHHHHH-HHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc----cccHHHHHHHHHHHHHHHHhcCcceEE
Confidence 456666663 345689999999999999999999999988776533212 356665432122222 357999
Q ss_pred Ec-CchhHHHHHH--cCCCHHHHHHHHhCCCCCCC-C-CCCCc-cCCcc--------CC--CCcccCCccccchhHHHHH
Q 018037 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCS-H-GKGGS-MHFYK--------KD--SGFYGGHGIVGAQIPLGCG 181 (362)
Q Consensus 118 ~~-~yR~h~~~l~--rG~~~~~~lael~g~~~g~~-~-Grggs-~H~~~--------~~--~~~~~~~g~lG~~~p~A~G 181 (362)
++ .|||+...+. ...|+..+|.++.|.+.-.- . ..|.. .|+.. .. ..+.++.+++.+..|+|+|
T Consensus 215 igmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmG 294 (913)
T KOG0451|consen 215 IGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMG 294 (913)
T ss_pred EeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhc
Confidence 88 7999987664 58999999999999876321 1 11111 23211 01 1256889999999999999
Q ss_pred HHHHHhhCC--------------CCCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEEcCCcccccccccccC
Q 018037 182 LAFAQKYSK--------------DETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAK 243 (362)
Q Consensus 182 ~A~A~k~~~--------------~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t~~~~~~~ 243 (362)
.+.+.+... .....|.++|||+ ++||.++|++|++...... .|++|.||+.|++++.++..+
T Consensus 295 KtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRS 374 (913)
T KOG0451|consen 295 KTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRS 374 (913)
T ss_pred chhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccccccc
Confidence 999876431 1236788999999 6899999999998655444 489999999999999887664
Q ss_pred CchHhh---hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCC
Q 018037 244 SPSYYK---RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERD 319 (362)
Q Consensus 244 ~~~~~~---~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~D 319 (362)
+ .|++ +.++.|.++|||.||++|..|.+-|++|-|+ .+.++|++.|||.+||++-|++ +|++|-+|+++++ |.
T Consensus 375 s-~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp-~ftspvmyk~v~a-Re 451 (913)
T KOG0451|consen 375 S-AYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDP-TFTSPVMYKEVEA-RE 451 (913)
T ss_pred c-hhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCc-cccChhHHHHHHh-hh
Confidence 3 3443 4689999999999999999999999999999 9999999999999999999998 5999999999984 66
Q ss_pred HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018037 320 PI-ERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359 (362)
Q Consensus 320 Pi-~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~ 359 (362)
.+ ..|.++|++.|++|+++++++..+..+.+++.++.+..
T Consensus 452 SvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~ 492 (913)
T KOG0451|consen 452 SVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPA 492 (913)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 55 57899999999999999999999999999998887654
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=213.22 Aligned_cols=133 Identities=27% Similarity=0.329 Sum_probs=116.4
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++...+|++|+++|+|+|+|+|.|+.+ .+.+|+|++|||++++|.+|||+++|+.|+|| +|+||+||+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 3677889999999999999999999763 47889999999999999999999999999999 678999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~ 298 (362)
|+++++.+... ..++..+ +||++.++| ||||++++.+|+++|.+. +++|++|++.|+|++|.+.
T Consensus 183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~--~~~P~~I~~~T~~g~G~~~ 249 (653)
T TIGR00232 183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKAS--KDKPTLIEVTTTIGFGSPN 249 (653)
T ss_pred eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecccCcc
Confidence 99999987765 4566664 599999999 999999999888776531 1489999999999999863
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=212.37 Aligned_cols=150 Identities=23% Similarity=0.230 Sum_probs=126.0
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++...+|++|++++.|+|+|+|.|+.+ .+.+|+|++|||+++||++|||+++|+.|+|| +|+||+||+
T Consensus 107 pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~ 186 (663)
T PRK12754 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (663)
T ss_pred CCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 3678899999999999999999999875 37899999999999999999999999999999 579999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC-C-CCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS-D-PGSTYR 306 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~-D-~~~~YR 306 (362)
++++++.+... ..++..+ +||+++++ |||||++++.+|+++|... .++|++|+++|++.+|.+.. + +..+..
T Consensus 187 ~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~--~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~ 263 (663)
T PRK12754 187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV--TDKPSLLMCKTIIGFGSPNKAGTHDSHGA 263 (663)
T ss_pred CccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc--CCCCEEEEEEeeeccCccccCCCccccCC
Confidence 99999888765 4677774 59999999 8999999999999887642 38899999999999998732 2 222222
Q ss_pred --ChhhHHhHh
Q 018037 307 --TRDEISGVR 315 (362)
Q Consensus 307 --~~~e~~~~~ 315 (362)
+++|++..+
T Consensus 264 ~l~~~~~~~~~ 274 (663)
T PRK12754 264 PLGDAEIALTR 274 (663)
T ss_pred CCCHHHHHHHH
Confidence 556666644
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=187.98 Aligned_cols=126 Identities=26% Similarity=0.306 Sum_probs=106.5
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccC
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 243 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~ 243 (362)
++..++|++|+++|+|+|+|+|.|+++++++|||++|||++++|.+||+|++|+.+++|+|+||+||+|+++++... .
T Consensus 69 ~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~--~ 146 (195)
T cd02007 69 YDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT--P 146 (195)
T ss_pred CceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC--H
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999877652 1
Q ss_pred CchHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 244 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
...|...+|++.. .|||+|++++.+++++|.+ .++|++|++.|++.+|
T Consensus 147 ~~~~~a~G~~~~~-~vdG~d~~~l~~a~~~a~~---~~~P~~I~~~T~kg~g 194 (195)
T cd02007 147 GNLFEELGFRYIG-PVDGHNIEALIKVLKEVKD---LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHhcCCCccc-eECCCCHHHHHHHHHHHHh---CCCCEEEEEEEecccC
Confidence 1223333444433 5899999999999888754 2899999999999876
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=213.77 Aligned_cols=229 Identities=23% Similarity=0.240 Sum_probs=161.0
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--CchhHH
Q 018037 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (362)
Q Consensus 49 ~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~h~ 125 (362)
+++.|.+...++.++|.++- ..+|++=..+. .+. .|+.-.+.|---+.+++...++ +.|.++- .|.+..
T Consensus 3 ~i~~p~dl~~l~~~~l~~la---~~iR~~~i~~~--~~~---~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~ 74 (617)
T TIGR00204 3 LINSPQELRLLSIDELEKLC---DELRRYLLESV--SAS---GGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYP 74 (617)
T ss_pred CCCCHHHHhhCCHHHHHHHH---HHHHHHHHHHH--hcc---CCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHH
Confidence 46678888889988877664 44566433332 222 2555556777666677777777 6787655 455555
Q ss_pred HHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcc-cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc
Q 018037 126 TFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (362)
Q Consensus 126 ~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~-~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~ 204 (362)
+.+..|. . +-|..+ .+.. | -+.|....+..+. .++|++|+++|+|+|+|+|.|+++.+.+++|++|||++
T Consensus 75 ~~~~~G~-~-~~l~~~-r~~g----~--l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~ 145 (617)
T TIGR00204 75 HKLLTGR-R-EKFSTL-RQKK----G--LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAI 145 (617)
T ss_pred HHHHhCc-H-HHhcch-hhcC----C--cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCccc
Confidence 5555674 1 212111 1111 1 2234332222222 47899999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhCCCCeEEEEEcCCccccccccccc-----------------------C-Cc---------------
Q 018037 205 NQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-----------------------K-SP--------------- 245 (362)
Q Consensus 205 ~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~-----------------------~-~~--------------- 245 (362)
++|.+|||+|+|+.|+||+|+||+||+|+++++..... . .+
T Consensus 146 ~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 225 (617)
T TIGR00204 146 TAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMK 225 (617)
T ss_pred ccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 99999999999999999999999999999987764210 0 00
Q ss_pred -------hHhhhcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 246 -------SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 246 -------~~~~~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
-|.+ +|+..+ .|||||+.++.++++.+.+. ++|++|+++|.|..|.+..
T Consensus 226 ~~~~~~~~f~~--~G~~~~~~vDGhd~~~l~~al~~ak~~---~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 226 GLVVPGTFFEE--LGFNYIGPVDGHDLLELIETLKNAKKL---KGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hccCccchHHH--cCCcEEcccCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCchh
Confidence 1333 444455 89999999999999866543 8899999999999997654
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=191.78 Aligned_cols=135 Identities=22% Similarity=0.307 Sum_probs=119.9
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCccccccccccc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA 242 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~ 242 (362)
++...+|++|+++|+|+|+|+|.++.++++.|+|++|||++++|.+||++++|+.++|| +++|++||+|++..+.....
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence 66677899999999999999999999999999999999999999999999999999998 78999999999887765554
Q ss_pred CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCC
Q 018037 243 KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300 (362)
Q Consensus 243 ~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D 300 (362)
...+|..+ ++|++++.|||+|++++.+++++|.+. .++|++|++.|.|.+||+...
T Consensus 179 ~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~--~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 179 FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS--KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc--CCCCEEEEEEeecccccCccC
Confidence 56678774 599999999999999999999988752 278999999999999998543
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-22 Score=209.09 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=127.8
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++..++|++|++++.|+|+|+|.|+.+. +.+|+|++|||++++|++|||+|+|+.|+|| +|+||+||++
T Consensus 110 gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~ 189 (661)
T PTZ00089 110 GVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKI 189 (661)
T ss_pred CcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCc
Confidence 5567799999999999999999998643 7899999999999999999999999999998 6899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceEEE-eCC-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC---CC
Q 018037 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGM-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS---TY 305 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~~--g~gi~g~~V-dG~-D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~---~Y 305 (362)
+++++..... ..++..+ ++|++++.| ||| |+.++++++++|++. .++|++|+++|+|++||.+.++.. .+
T Consensus 190 ~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~e~~~~~H~~~ 266 (661)
T PTZ00089 190 TIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS--KGKPKLIIVKTTIGYGSSKAGTEKVHGAP 266 (661)
T ss_pred ccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc--CCCcEEEEEEeeecCCCCcCCCCCccCCC
Confidence 9998887653 3455553 589999999 999 999999999988763 268999999999999987766432 36
Q ss_pred CChhhHHhHhh
Q 018037 306 RTRDEISGVRQ 316 (362)
Q Consensus 306 R~~~e~~~~~~ 316 (362)
++.+|++++++
T Consensus 267 ~~~~~~~~~~~ 277 (661)
T PTZ00089 267 LGDEDIAQVKE 277 (661)
T ss_pred CCHHHHHHHHH
Confidence 67888887754
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=205.19 Aligned_cols=148 Identities=24% Similarity=0.297 Sum_probs=125.9
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++...+|++|+++|+|+|+|+|.++.+. +++|||++|||++++|.+||+|++|+.++|| +|+|++||+|
T Consensus 112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~ 191 (624)
T PRK05899 112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI 191 (624)
T ss_pred CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 5667799999999999999999998776 8899999999999999999999999999999 6899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCC---
Q 018037 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRT--- 307 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR~--- 307 (362)
+++.+.... ..++|..+ ++|+++++|||+|++++.+++++|.+. ++|++|++.|+|.+||+..++...|+.
T Consensus 192 ~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~---~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~ 267 (624)
T PRK05899 192 SIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKAS---TKPTLIIAKTIIGKGAPNKEGTHKVHGAPL 267 (624)
T ss_pred ccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhc---CCCEEEEEEeEeccCCccccCCCcccCCCC
Confidence 998776533 34677774 599999999999999999999888754 899999999999999986654434553
Q ss_pred -hhhHHhHh
Q 018037 308 -RDEISGVR 315 (362)
Q Consensus 308 -~~e~~~~~ 315 (362)
+++++.+.
T Consensus 268 ~~~~~~~~~ 276 (624)
T PRK05899 268 GAEEIAAAK 276 (624)
T ss_pred CHHHHHHHH
Confidence 46666553
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-22 Score=179.31 Aligned_cols=217 Identities=19% Similarity=0.208 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHH-HHHHhcCC--C-------CCEEEcCchhHHH---H--
Q 018037 63 ELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVA-IGMEAGIT--K-------KDSIITAYRDHCT---F-- 127 (362)
Q Consensus 63 ~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~-vg~~~~l~--~-------~D~v~~~yR~h~~---~-- 127 (362)
+..++-+....||+--.++. +.+| .|+++.+.+.--+. +-....|+ | .|+++-+ .+|+. +
T Consensus 6 ~~~~L~~~A~~iRr~~v~m~--~~~~--~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~ 80 (243)
T COG3959 6 SVDELERIAREIRRNIVRML--ANAG--SGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYAT 80 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHh--cccC--CCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHH
Confidence 34444555667787655443 3333 24555565554443 33344332 2 4666554 24432 1
Q ss_pred -HHcCCCHHHHHHHHhCCCCCCCCCCCCccCCcc-CCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccc
Q 018037 128 -LGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205 (362)
Q Consensus 128 -l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~-~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~ 205 (362)
..+|+-+++-+. -+++..+ --++|.-. .-.++..++|++|+++++|+|+|++.|+++.+..|+++.|||.++
T Consensus 81 Lae~G~~p~eeL~-~~~~~~s-----rL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~ 154 (243)
T COG3959 81 LAEKGYFPEEELE-TFRRIGS-----RLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD 154 (243)
T ss_pred HHHcCCCCHHHHH-HhccCCC-----cCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc
Confidence 235766555554 2222211 12245433 223677889999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCC
Q 018037 206 QGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNG 282 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~g 282 (362)
+|++|||+.+|+.++|. +|.||+-|...+...+....+..++.+ ++||...++|||||++++.+|+..+..- +++
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~--~~r 232 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS--KGR 232 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc--CCC
Confidence 99999999999999998 578899998888777666555555665 4688889999999999999888776542 159
Q ss_pred CEEEEEEEec
Q 018037 283 PMILEMDTYR 292 (362)
Q Consensus 283 P~lIe~~tyR 292 (362)
|.+|.+.|.+
T Consensus 233 P~~IIa~Tvk 242 (243)
T COG3959 233 PTVIIAKTVK 242 (243)
T ss_pred CeEEEEeccc
Confidence 9999999865
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=203.69 Aligned_cols=231 Identities=21% Similarity=0.181 Sum_probs=161.0
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEcC--chh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIITA--YRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~~--yR~ 123 (362)
...+..|.+...++.++|.++- ..+|+.-..+.. + + .|+.-.+.|---+.+.+...++ +.|.++-+ |.+
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~a---~~iR~~~~~~~~--~-~--~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~ 78 (580)
T PRK05444 7 LDTINSPADLKKLSEEELPQLA---DEIREFLIDVVS--K-T--GGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQA 78 (580)
T ss_pred hhccCCHHHHhcCCHHHHHHHH---HHHHHHHHHHHH--h-c--CCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHH
Confidence 4456668888888888877663 345664433332 2 2 3544445665555555554554 45766543 443
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCC--ccCCccCC-CCcccCCccccchhHHHHHHHHHHhhC-CCCCeEEEEe
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGG--SMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYS-KDETVTFALY 199 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Grgg--s~H~~~~~-~~~~~~~g~lG~~~p~A~G~A~A~k~~-~~~~vvv~~~ 199 (362)
..++...|. . .++.. ..+-| +.|....+ .++..++|++|+++|+|+|+|+|.|++ ++++.|+|++
T Consensus 79 y~~~~~~g~-~----~~l~~------~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~ 147 (580)
T PRK05444 79 YPHKILTGR-R----DRFDT------LRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVI 147 (580)
T ss_pred HHHHHHhCc-H----HHhcC------cccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 333444454 1 12211 11111 23543322 356678999999999999999999988 5889999999
Q ss_pred CCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccccccccc---CCchHhh--hcCCcceE-EEeCCCHHHHHHHHHH
Q 018037 200 GDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA---KSPSYYK--RGDYVPGL-KVDGMDALAVKQACKF 273 (362)
Q Consensus 200 GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~---~~~~~~~--~g~gi~g~-~VdG~D~~av~~a~~~ 273 (362)
|||++++|.+||++++|+.+++|+|+|++||+|++++++.... ...++.. +++|++.+ .|||+|++++++++++
T Consensus 148 GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~ 227 (580)
T PRK05444 148 GDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKN 227 (580)
T ss_pred cccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999887764321 1122233 46888888 5899999999998887
Q ss_pred HHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 274 AKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 274 A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
|.+. ++|++|++.|.|.+|.+..
T Consensus 228 a~~~---~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 228 AKDL---KGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHhC---CCCEEEEEEecCCcCCChh
Confidence 6643 8999999999999998744
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=202.57 Aligned_cols=134 Identities=22% Similarity=0.243 Sum_probs=117.8
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|++++.|+|+|+|.|+.+. +.+|+|++|||++++|.+|||+|+|+.|+|| +|+||+||+
T Consensus 107 pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~ 186 (663)
T PRK12753 107 PGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNG 186 (663)
T ss_pred CCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 36778999999999999999999998652 6899999999999999999999999999998 688999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
++++++..... ..++..+ +||++++. |||||++++++|+++|.+. .++|++|+++|++.+|++..
T Consensus 187 ~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~~ 254 (663)
T PRK12753 187 ISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV--KDKPSLIICRTIIGFGSPNK 254 (663)
T ss_pred CcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC--CCCeEEEEEEEeecCCCCcc
Confidence 99999887654 4566664 59999995 9999999999999988752 37899999999999999843
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=201.67 Aligned_cols=134 Identities=25% Similarity=0.303 Sum_probs=116.5
Q ss_pred CCcccCCccccchhHHHHHHHHHHhh-----CCC-----CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKY-----SKD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~-----~~~-----~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|+++|.|+|+|+|.|+ +++ +.+|+|++|||++++|++|||+|+|+.|+|| +|+||+||+
T Consensus 98 pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~ 177 (654)
T PLN02790 98 PGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNH 177 (654)
T ss_pred CCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 36788999999999999999999995 343 6899999999999999999999999999998 788999999
Q ss_pred cccccccccccCCchHhh--hcCCcceEEEeC--CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYK--RGDYVPGLKVDG--MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG--~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
|+++++..... ..++.. .+||++++.||| +|++++++|+++|.+. .++|++|+++|++.+|.+..
T Consensus 178 ~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~--~~~P~lI~~~T~kG~G~~~~ 246 (654)
T PLN02790 178 ISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV--TDKPTLIKVTTTIGYGSPNK 246 (654)
T ss_pred ccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc--CCCeEEEEEEEeecCCCccc
Confidence 99999887654 345555 359999999988 8999999999888752 38999999999999998743
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-20 Score=193.08 Aligned_cols=234 Identities=20% Similarity=0.192 Sum_probs=159.5
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--Cchh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~ 123 (362)
..+++.|.+...++.++|.++- ..+|++=..+. .+.+ |+.-.+.|---+.+++...++ |.|.++- .|.+
T Consensus 9 l~~i~~p~dl~~l~~~~l~~~a---~~iR~~ii~~~--~~~~---GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~ 80 (641)
T PRK12571 9 LDRIKGPADLRALSDAELEQLA---DELRAEVISAV--SETG---GHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQC 80 (641)
T ss_pred hhhcCCHHHHHhCCHHHHHHHH---HHHHHHHHHHH--HHhC---CCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHH
Confidence 5566778888999988877663 44566433332 2332 555557777666666766564 6786654 4555
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCC-CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS-GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~-~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG 202 (362)
..+.+..|. .+-|..+. +..+ . +.|....+. .-....|+-+.+++.|+|+|+|.++.++++.|+|++|||
T Consensus 81 Y~~~~l~g~--~~~l~~~r-~~~~----l--~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG 151 (641)
T PRK12571 81 YPHKILTGR--RDRFRTLR-QKGG----L--SGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDG 151 (641)
T ss_pred HHHHHHhCC--HHHHhhhh-hCCC----c--CCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCc
Confidence 555555564 22222111 1111 1 123322211 101223444667899999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccc-------cccCCchH----------------------------
Q 018037 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW-------RAAKSPSY---------------------------- 247 (362)
Q Consensus 203 a~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~-------~~~~~~~~---------------------------- 247 (362)
++++|.+||++++|+.|++|+|+|++||+|+++++.. .......|
T Consensus 152 ~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (641)
T PRK12571 152 SLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRAREL 231 (641)
T ss_pred hhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHh
Confidence 9999999999999999999999999999999887764 11111111
Q ss_pred -------hh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 248 -------YK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 248 -------~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
.. +++|+..+ .|||||++++.+++++|.+. .++|++|+++|.+.+|.+..
T Consensus 232 ~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~--~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 232 VTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR--ADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred hhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC--CCCCEEEEEEecCccCcchh
Confidence 01 34788888 79999999999999888752 28899999999999998743
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=192.61 Aligned_cols=234 Identities=19% Similarity=0.182 Sum_probs=161.4
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--Cchh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~ 123 (362)
..++..|.+...++.++|.++-. .+|+.-..+. .+.| |+.-.+.|---+.+++...++ |.|.++- .|-.
T Consensus 34 l~~i~~p~dlk~l~~~~l~~la~---~iR~~ii~~~--~~~~---GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~a 105 (677)
T PLN02582 34 LDTINYPIHMKNLSVKELKQLAD---ELRSDVIFNV--SKTG---GHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQS 105 (677)
T ss_pred hhhCCCHHHHhhCCHHHHHHHHH---HHHHHHHHHH--HhcC---CCcCccccHHHHHHHHHHhhCCCCCeEEEECcchH
Confidence 55667788888999999887744 4565433332 2332 555557777666666766665 7897766 4555
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCC-CCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~-~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG 202 (362)
.++.+..|.. .++..-.. .| +-+.|....+ .+...++|++|.++++|+|+|+|.++++.++++||++|||
T Consensus 106 y~~~~l~gr~-----~~l~~~r~---~g-~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG 176 (677)
T PLN02582 106 YPHKILTGRR-----DKMHTMRQ---TN-GLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDG 176 (677)
T ss_pred HHHHHHHccH-----HHhccccc---CC-CcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 5555555641 11111000 00 1223432211 2445679999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCCCCeEEEEEcCCc-cc--------ccccccc-------cCCch--------------------
Q 018037 203 AANQGQLFEALNIAALWDLPAILVCENNHY-GM--------GTAEWRA-------AKSPS-------------------- 246 (362)
Q Consensus 203 a~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi--------~t~~~~~-------~~~~~-------------------- 246 (362)
++++|++|||||+|+.|++|+|+||+||+. ++ +...... ..++.
T Consensus 177 ~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (677)
T PLN02582 177 AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMH 256 (677)
T ss_pred ccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHH
Confidence 999999999999999999999999999997 33 1111000 00000
Q ss_pred -Hhh------------------hcCCcceE-EEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018037 247 -YYK------------------RGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 247 -~~~------------------~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~ 299 (362)
+.. .++|+.++ .|||||++++.++++.+.+. . ++|++|+++|-+.+|...+
T Consensus 257 ~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 257 ELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 000 23667655 89999999999999988764 2 5999999999999999865
|
|
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-19 Score=174.35 Aligned_cols=163 Identities=21% Similarity=0.158 Sum_probs=127.3
Q ss_pred CcccCCccccchhHHHHHHHHHHhh-------CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~-------~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~ 235 (362)
++..++|++|.++++|+|+|+|.|+ .+.+..|+|++|||++++|++||++++|+.++|. +|+|+++|+.++.
T Consensus 112 gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qid 191 (386)
T cd02017 112 FWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLD 191 (386)
T ss_pred CeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccC
Confidence 4777899999999999999999998 5578899999999999999999999999999996 7889999999988
Q ss_pred cccccc-cCCchHhh--hcCCcceEEEe----------------------------------------------------
Q 018037 236 TAEWRA-AKSPSYYK--RGDYVPGLKVD---------------------------------------------------- 260 (362)
Q Consensus 236 t~~~~~-~~~~~~~~--~g~gi~g~~Vd---------------------------------------------------- 260 (362)
.+++.. ....++.. ++||...+.||
T Consensus 192 G~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 192 GPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred CcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 777653 23345665 35888889998
Q ss_pred -----------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC--C-CCCCCC---CChhhHHhHhhc
Q 018037 261 -----------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM--S-DPGSTY---RTRDEISGVRQE 317 (362)
Q Consensus 261 -----------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~--~-D~~~~Y---R~~~e~~~~~~~ 317 (362)
|||+.++.+|+.++... +++|++|.+.|.+.+|.+. . ++..++ -+++|+++.++.
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~--~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~ 349 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH--KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDR 349 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC--CCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHH
Confidence 99999999999887752 3789999999999999872 2 333222 255666665433
Q ss_pred CCHHHHHHHHHH
Q 018037 318 RDPIERIRKLIL 329 (362)
Q Consensus 318 ~DPi~~~~~~L~ 329 (362)
-+ +.++...+.
T Consensus 350 lg-~~~~~~~~~ 360 (386)
T cd02017 350 FG-IPVSDEQLE 360 (386)
T ss_pred cC-CCCCHHHhc
Confidence 32 344444443
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=173.14 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=135.0
Q ss_pred cchHHHHHHHHhcCCC-CCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchh
Q 018037 98 DGQEAVAIGMEAGITK-KDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQI 176 (362)
Q Consensus 98 ~GqEa~~vg~~~~l~~-~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~ 176 (362)
.||++.++.....|.. .|.+++.|+.+..- +.++|.++ + ...| .++|......++...+|.||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~g------l~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEG------MRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHH------HHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhHH
Confidence 5999999877778877 59999999977521 24566665 1 2222 56788766678999999999999
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchH---HHHHHHHHhCCCC-eEEEEEcCCcccccccccc-cCCchHhhh-
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCENNHYGMGTAEWRA-AKSPSYYKR- 250 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~---~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~-~~~~~~~~~- 250 (362)
++|+|+|+ ++++.+|+|++|||++++|.+ ||+.+++...++. |+.|++||+|.|++++... ....++.++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999985 568899999999999999996 8888888888988 5678899999999998855 334567664
Q ss_pred -cCCcceEEEeCCCHHHHHHHHHHHHHHhc
Q 018037 251 -GDYVPGLKVDGMDALAVKQACKFAKEHAL 279 (362)
Q Consensus 251 -g~gi~g~~VdG~D~~av~~a~~~A~~~ar 279 (362)
+||++.+.|||+|+++|++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999888765
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=178.13 Aligned_cols=182 Identities=23% Similarity=0.316 Sum_probs=126.2
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhC----------CCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYS----------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~----------~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|++++.|+|+|+|.|+. ..+..|+|++|||.+++|++|||+.+|+.++|. +|+|+++|+
T Consensus 104 ~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~ 183 (332)
T PF00456_consen 104 PGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNG 183 (332)
T ss_dssp TT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEES
T ss_pred ceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCC
Confidence 356678999999999999999998863 236789999999999999999999999999999 788999999
Q ss_pred cccccccccccCCchHhh--hcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCC--CCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYK--RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD--PGSTYR 306 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~--~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D--~~~~YR 306 (362)
.++..+.+... ..++.. ++||...++| ||+|++++.+|+++|... +++|++|.+.|.+.+|.+... ...++.
T Consensus 184 ~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~--~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~ 260 (332)
T PF00456_consen 184 IQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS--KGKPTVIIARTVKGKGVPFMEGTAKWHGS 260 (332)
T ss_dssp EETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS--TSS-EEEEEEE-TTTTSTTTTTSGGGTSS
T ss_pred cccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc--CCCCceeecceEEecCchhhcccchhhcc
Confidence 98877665433 234544 3688888998 999999999999988641 289999999999999996432 222332
Q ss_pred --ChhhHHhHhhc----C-------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 018037 307 --TRDEISGVRQE----R-------DPIERIRKLILAHDLATEKELKDIEKEVRK 348 (362)
Q Consensus 307 --~~~e~~~~~~~----~-------DPi~~~~~~L~~~g~~t~~el~~i~~e~~~ 348 (362)
+.||+++.++. . |....|++...+ |-..++++++.-++.++
T Consensus 261 ~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~-g~~~~~~W~~~~~~y~~ 314 (332)
T PF00456_consen 261 PLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAE-GAKAEAEWKELFAAYKK 314 (332)
T ss_dssp --HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Confidence 56667665531 1 234455555433 43344444444444433
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=187.49 Aligned_cols=237 Identities=17% Similarity=0.162 Sum_probs=158.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEcC--chh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIITA--YRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~~--yR~ 123 (362)
.-.++.|.+...++.++|.++- ..+|+.=..+ .++. .|++-.+.|---+.+++...++ |.|.++-+ |-+
T Consensus 67 l~~i~~p~~~k~l~~~~L~~la---~eiR~~ii~~--~~~~---~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqa 138 (641)
T PLN02234 67 LDTINHPMHMKNLSIKELKVLS---DELRSDVIFN--VSKT---GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQS 138 (641)
T ss_pred hhhcCCHHHHhhCCHHHHHHHH---HHHHHHHHHH--Hhhc---CCCccccchHHHHHHHHHHhcCCCCCeEEEecchhH
Confidence 3455556666777777777664 3456533222 2222 3666667887777777777665 77877663 444
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCC-CCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~-~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG 202 (362)
.++.+..|.- .-|..+ +.. .| -+.|....+ .+...++|++|.++++|+|+|+|.++++.+..|||++|||
T Consensus 139 ya~~~ltgr~--~~l~t~--r~~---gg--l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDG 209 (641)
T PLN02234 139 YPHKILTGRR--GKMKTI--RQT---NG--LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDG 209 (641)
T ss_pred HHHHHHHhhh--hhhccc--ccC---CC--cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccc
Confidence 4444444431 001110 011 11 123432212 2456789999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCCCCeEEEEEcCCcc------ccccccccc----------CCc-----hHhh--hcCCcceE-E
Q 018037 203 AANQGQLFEALNIAALWDLPAILVCENNHYG------MGTAEWRAA----------KSP-----SYYK--RGDYVPGL-K 258 (362)
Q Consensus 203 a~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g------i~t~~~~~~----------~~~-----~~~~--~g~gi~g~-~ 258 (362)
++++|++|||+|.|+..+-++|+|+++|+.. ...+..... .++ .... +++|+..+ .
T Consensus 210 el~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~ 289 (641)
T PLN02234 210 AMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGP 289 (641)
T ss_pred hhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEee
Confidence 9999999999999997776789999999873 211111100 000 1122 34788888 9
Q ss_pred EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC
Q 018037 259 VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP 301 (362)
Q Consensus 259 VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~ 301 (362)
|||||++++.++++++.+. +.++|++|+++|.+..|.+....
T Consensus 290 vDGHd~~~l~~al~~~k~~-~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 290 VDGHNIDDLVSILETLKST-KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred ECCCCHHHHHHHHHHHHhc-CCCCCEEEEEEEecCCCcchhhc
Confidence 9999999999999887643 11589999999999999986643
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=170.50 Aligned_cols=165 Identities=20% Similarity=0.152 Sum_probs=132.7
Q ss_pred CchhHHHHHHcCCCHH-HHHHHHhCCCC------CCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCC
Q 018037 120 AYRDHCTFLGRGGTLL-EVFSELMGRKD------GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (362)
Q Consensus 120 ~yR~h~~~l~rG~~~~-~~lael~g~~~------g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~ 192 (362)
.||+|+++...|.++. .++.+.+|+.+ ||+.+.++.+|+... ++.+.++++|.+.++|.|+++|.++.+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5789999999999988 89999998877 888888888877654 56677899999999999999999887665
Q ss_pred Ce-EEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccccccccc-----------------CCchHhh--hcC
Q 018037 193 TV-TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-----------------KSPSYYK--RGD 252 (362)
Q Consensus 193 ~v-vv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~-----------------~~~~~~~--~g~ 252 (362)
.+ |++++|||++..+.+ |+|+.|..|++|++|||+||.+.+.|-.+... ...|+.. .++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 45 555999999888776 99999999999999999999985443222111 1123333 357
Q ss_pred CcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 253 YVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 253 gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
|++.+ +++-.|+.++.+++++|+++ +||.+|++.+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~~---~Gps~I~~~s 206 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKEI---RGFKFIHLLA 206 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 87765 67888999999999999976 9999999984
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=173.05 Aligned_cols=187 Identities=20% Similarity=0.140 Sum_probs=134.1
Q ss_pred HHHHhcCCC------CCEEEcCchhHHHHH------HcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccc
Q 018037 105 IGMEAGITK------KDSIITAYRDHCTFL------GRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172 (362)
Q Consensus 105 vg~~~~l~~------~D~v~~~yR~h~~~l------~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~l 172 (362)
++....|+. .|.|++ .+|+... ..|.-..+-|..+ .+... ..|-++..|......++-..+|+|
T Consensus 116 vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~L~l~G~ls~e~L~~F-Rq~~~-g~gL~shPhp~~~p~~ve~sTGSL 191 (885)
T TIGR00759 116 VGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYARAFLEGRLTEEQLDNF-RQEVQ-GDGLSSYPHPWLMPDFWQFPTVSM 191 (885)
T ss_pred HHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHHHHHcCCCCHHHHHHh-cCCCC-CCCCCCCCCcCcCCCCEEeCCCCc
Confidence 455556664 688776 4565422 2465333333333 22211 122222233222111356789999
Q ss_pred cchhHHHHHHHHHHhh-------CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccC-
Q 018037 173 GAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK- 243 (362)
Q Consensus 173 G~~~p~A~G~A~A~k~-------~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~- 243 (362)
|.+++.|+|.|++.|| ++.+..|+|++|||.++||++|||+.+|+.++|. +|+||++|...+..++.....
T Consensus 192 G~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i 271 (885)
T TIGR00759 192 GLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKI 271 (885)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCcccccccc
Confidence 9999999999999997 5678899999999999999999999999999998 679999999988777654322
Q ss_pred CchHhh--hcCCcceEEE--------------------------------------------------------------
Q 018037 244 SPSYYK--RGDYVPGLKV-------------------------------------------------------------- 259 (362)
Q Consensus 244 ~~~~~~--~g~gi~g~~V-------------------------------------------------------------- 259 (362)
..++.+ +++|...++|
T Consensus 272 ~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~ 351 (885)
T TIGR00759 272 IQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDA 351 (885)
T ss_pred chhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchh
Confidence 234444 4577777888
Q ss_pred -------eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018037 260 -------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (362)
Q Consensus 260 -------dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs 297 (362)
+|||+.+|++|++.|.+. +++|++|.++|.+.+|.+
T Consensus 352 ~i~~l~rgGHD~~~I~~A~~~A~~~--~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 352 DIWALNRGGHDPRKVYAAYAAAQEH--KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred hhhhccCCCCCHHHHHHHHHHHHhC--CCCCEEEEEeeeecCCCC
Confidence 599999999999988764 257999999999999987
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=161.55 Aligned_cols=218 Identities=24% Similarity=0.326 Sum_probs=142.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--CchhHH
Q 018037 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (362)
Q Consensus 49 ~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~h~ 125 (362)
+++.|.+...+|.+||.++-. .+|.+=. ... .+..|++-++.|---..+++...++ |.|.|+- .|.+..
T Consensus 3 ~I~~p~dlk~ls~~eL~~La~---eiR~~ii--~~v---s~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~ 74 (270)
T PF13292_consen 3 KINSPEDLKKLSIEELEQLAQ---EIREFII--ETV---SKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYV 74 (270)
T ss_dssp G-SSHHHHTTS-GGGHHHHHH---HHHHHHH--HHC---TCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HH
T ss_pred CCCCHHHHHcCCHHHHHHHHH---HHHHHHH--HHH---hhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccch
Confidence 566787888899999988854 4565532 222 3345777778999999999999997 7898876 577776
Q ss_pred HHHHcCCCHHHHHHHHhCCCCCCC--CCCCCccCCccC---CCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeC
Q 018037 126 TFLGRGGTLLEVFSELMGRKDGCS--HGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (362)
Q Consensus 126 ~~l~rG~~~~~~lael~g~~~g~~--~Grggs~H~~~~---~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~G 200 (362)
|-+ |.||..... +-.||-.-|..+ +... .+.|+-+.++++|+|+|.|.++++.+..+|+++|
T Consensus 75 HKi------------LTGR~~~f~TlRq~gGlSGF~~r~ES~~D~-f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIG 141 (270)
T PF13292_consen 75 HKI------------LTGRRDRFHTLRQYGGLSGFPKRSESEYDA-FGAGHSSTSISAALGMAVARDLKGEDRKVVAVIG 141 (270)
T ss_dssp HHH------------CTTTCCCGGGTTSTTS--SS--TTT-TT---S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEE
T ss_pred hhh------------ccCcHHHhchhhhcCCcCCCCCcccCCCCc-ccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 655 455655322 222332222221 1222 3679999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHhCCCCeEEEEEcCCccccccccc-------ccCCchH--------------------hh----
Q 018037 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR-------AAKSPSY--------------------YK---- 249 (362)
Q Consensus 201 DGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~-------~~~~~~~--------------------~~---- 249 (362)
|||+.-|..+||||.|...+-++|+|++||+..|+.+..- ....+.| ..
T Consensus 142 DGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~ 221 (270)
T PF13292_consen 142 DGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKE 221 (270)
T ss_dssp TTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC------------------------------------
T ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 9999999999999999999999999999999988755321 0000100 00
Q ss_pred --hc--------CCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 250 --RG--------DYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 250 --~g--------~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
+. .|+.++ .|||||++++.++++.+++. +||+||++.|
T Consensus 222 s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~---~gPvllHV~T 270 (270)
T PF13292_consen 222 SLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAKDI---DGPVLLHVIT 270 (270)
T ss_dssp -------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS---SSEEEEEEE-
T ss_pred hhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 11 244443 78999999999888877654 9999999987
|
|
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-16 Score=172.31 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=110.7
Q ss_pred cccCCccccchhHHHHHHHHHHhhCC-------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCccccc
Q 018037 165 FYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGT 236 (362)
Q Consensus 165 ~~~~~g~lG~~~p~A~G~A~A~k~~~-------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t 236 (362)
+-..+|+||.+++.|+|+|++.||.. .+..|+|++|||.++||++|||+.+|+.++|. +|+|+++|...+..
T Consensus 184 ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG 263 (889)
T TIGR03186 184 WQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDG 263 (889)
T ss_pred eEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Confidence 55689999999999999999988532 36889999999999999999999999999998 67999999998877
Q ss_pred ccccccC-CchHhh--hcCCcceEEE------------------------------------------------------
Q 018037 237 AEWRAAK-SPSYYK--RGDYVPGLKV------------------------------------------------------ 259 (362)
Q Consensus 237 ~~~~~~~-~~~~~~--~g~gi~g~~V------------------------------------------------------ 259 (362)
+...... ..++.+ +++|...++|
T Consensus 264 ~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~ 343 (889)
T TIGR03186 264 PVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAA 343 (889)
T ss_pred ccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHH
Confidence 7664221 234554 4677777888
Q ss_pred ---------------eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018037 260 ---------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 260 ---------------dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~ 298 (362)
+|||+.+|++|++.|++. +++|++|.++|.+.+|-+.
T Consensus 344 lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~--~~~PTvIla~TvkG~G~~~ 395 (889)
T TIGR03186 344 LVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH--EGRPTVILAKTMKGFGMGA 395 (889)
T ss_pred HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCCc
Confidence 699999999999998863 3689999999999999644
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=168.27 Aligned_cols=229 Identities=21% Similarity=0.245 Sum_probs=165.0
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--Cchh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~ 123 (362)
..++..|.+...+|.++|.++-. .+|.+= +...-+. .|++-++.|---..+++...++ |.|.++- .|..
T Consensus 5 L~~i~~P~dLk~ls~~eL~~La~---EiR~~l--i~~vS~~---GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQa 76 (627)
T COG1154 5 LDKINSPADLKKLSIEELPQLAD---EIREFL--LEVVSAT---GGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQA 76 (627)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHH--HHHhccC---CCccCCCcChhhhhHHHHHHhCCCCCCeEEecCccc
Confidence 34566788889999999998854 356542 2222233 4777779999999999999997 7887765 6777
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCC--CCccCCcc---CCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEE
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGK--GGSMHFYK---KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFAL 198 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Gr--ggs~H~~~---~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~ 198 (362)
..|-+..|. ......-| +|-.-+.. .++.+ .+.|+-+.++++|+|+|.|..+++.++.||++
T Consensus 77 YpHKiLTGR------------~e~f~tlRq~~GlsGf~~r~ESe~D~-f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaV 143 (627)
T COG1154 77 YPHKILTGR------------REQFDTLRQKDGLSGFPKREESEHDW-FGVGHSSTSISAALGMAKARDLKGEDRNVVAV 143 (627)
T ss_pred chhHHhcCc------------hhhcchhhhcCCCCCCCCcccCCCcc-cccCchHHHHHHHhhHHHHHHhcCCCCcEEEE
Confidence 777665543 32221111 11111111 12233 36799999999999999999999999999999
Q ss_pred eCCcccccchHHHHHHHHH-hCCCCeEEEEEcCCccccccccc-------ccCCc---------------------hHhh
Q 018037 199 YGDGAANQGQLFEALNIAA-LWDLPAILVCENNHYGMGTAEWR-------AAKSP---------------------SYYK 249 (362)
Q Consensus 199 ~GDGa~~~G~~~Ealn~A~-~~~LPvIfVv~NN~~gi~t~~~~-------~~~~~---------------------~~~~ 249 (362)
+||||+.-|..+||||.|. ..+-|+|+|+++|..+|+.+..- ....+ ++..
T Consensus 144 IGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~ 223 (627)
T COG1154 144 IGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAK 223 (627)
T ss_pred ECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHH
Confidence 9999999999999999998 55678999999999999765431 00011 0000
Q ss_pred ------hc----------CCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 250 ------RG----------DYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 250 ------~g----------~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
++ +|+.++ .|||||++++..+++.+.+. ++|+||++.|-+..|...+
T Consensus 224 r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~---~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 224 RAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDL---KGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred HHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCChh
Confidence 11 233333 68999999999999888765 9999999999999998755
|
|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-18 Score=153.98 Aligned_cols=120 Identities=23% Similarity=0.234 Sum_probs=95.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~~----- 240 (362)
++.|+||+++|+|+|+++|. +++.|||++|||++.+. ..| |.+|+++++|+++|| +|++|++......
T Consensus 50 ~~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~ 123 (196)
T cd02013 50 LSFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNN 123 (196)
T ss_pred CCCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCC
Confidence 35689999999999999985 68899999999998884 566 888999999987666 5556886432111
Q ss_pred -----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 241 -----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 241 -----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
....+||.+ ++||+++.+|+ ++.++.+++++|++.++.++|+|||+.+.+..
T Consensus 124 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 124 RFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred CcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 113478887 45999999997 68999999999998665699999999996644
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-16 Score=167.24 Aligned_cols=201 Identities=19% Similarity=0.185 Sum_probs=139.1
Q ss_pred ccccccccCcchH-HHHHHHHhcCC------CCCEEEcCchhHHHHH------HcCC-CHHHHHHHHhCCCCCCCCCCCC
Q 018037 89 LVRGFCHLYDGQE-AVAIGMEAGIT------KKDSIITAYRDHCTFL------GRGG-TLLEVFSELMGRKDGCSHGKGG 154 (362)
Q Consensus 89 ~i~gf~h~~~GqE-a~~vg~~~~l~------~~D~v~~~yR~h~~~l------~rG~-~~~~~lael~g~~~g~~~Grgg 154 (362)
++.|+.-.+.+-- -..++....|+ ..|.|++ .+|+... ..|. +.++ |..+ .+... ..|-.+
T Consensus 113 ~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~~l~G~l~~e~-L~~f-R~~~~-~~gl~~ 187 (896)
T PRK13012 113 ELGGHIASYASAADLFEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYARAFLEGRLSEEQ-LDHF-RQEIG-GPGLSS 187 (896)
T ss_pred CCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHHHHHcCCCCHHH-HHHh-cCCCC-CCCCCC
Confidence 3445433343332 22355656676 5788776 3565422 2354 4333 3322 22211 122222
Q ss_pred ccCCcc-CCCCcccCCccccchhHHHHHHHHHHhh-------CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEE
Q 018037 155 SMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AIL 225 (362)
Q Consensus 155 s~H~~~-~~~~~~~~~g~lG~~~p~A~G~A~A~k~-------~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIf 225 (362)
..|... |+ .+-..+|+||.+++.|+|.|++.|| ...++.|+|++|||.+++|+.|||+.+|+.++|. +||
T Consensus 188 ~P~p~~~p~-~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ 266 (896)
T PRK13012 188 YPHPWLMPD-FWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVF 266 (896)
T ss_pred CCCcCCCCC-CEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEE
Confidence 223221 21 3556799999999999999999984 4567899999999999999999999999999998 689
Q ss_pred EEEcCCcccccccccccC-CchHhh--hcCCcceEEE--------------------------e----------------
Q 018037 226 VCENNHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKV--------------------------D---------------- 260 (362)
Q Consensus 226 Vv~NN~~gi~t~~~~~~~-~~~~~~--~g~gi~g~~V--------------------------d---------------- 260 (362)
||++|...+..+...... ..++.+ +++|...++| |
T Consensus 267 ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~ 346 (896)
T PRK13012 267 VINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNRE 346 (896)
T ss_pred EEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHH
Confidence 999999988777654322 234444 4677778888 8
Q ss_pred ---------------------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018037 261 ---------------------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (362)
Q Consensus 261 ---------------------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs 297 (362)
|||+.+|++|++.|.+. +++|++|.++|.+.+|-+
T Consensus 347 ~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~--~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 347 HFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH--KGQPTVILAKTKKGYGMG 408 (896)
T ss_pred HhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCC
Confidence 99999999999988753 368999999999999975
|
|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=146.82 Aligned_cols=113 Identities=21% Similarity=0.217 Sum_probs=89.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEc-CCcccccccccc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAEWRA---- 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~N-N~~gi~t~~~~~---- 241 (362)
++.|+||+++|+|+|+++|. ++++|||++|||++++. .++|.+|+.++||+++||.| |+|++.....+.
T Consensus 45 ~~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 118 (172)
T cd02004 45 GTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGL 118 (172)
T ss_pred CCCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccC
Confidence 45689999999999999986 67899999999999874 35699999999998766655 568876433221
Q ss_pred -------cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 -------AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 -------~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
...+||.+. +||+++.+|+ +++++.++++++.+. ++|+|||+.+
T Consensus 119 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i 171 (172)
T cd02004 119 GLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALAS---GKPALINVII 171 (172)
T ss_pred CCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHc---CCCEEEEEEc
Confidence 134688774 5999999998 588888888887753 8999999975
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=167.62 Aligned_cols=223 Identities=16% Similarity=0.112 Sum_probs=164.5
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--Cch
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSL-YKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYR 122 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l-~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR 122 (362)
..+++.|.+...|+.+||.++-. .+|.+-. ... .+. .|++-++.|---..++++..++ |.|.|+- .|.
T Consensus 79 L~~i~~P~dlk~L~~~eL~~La~---EiR~~li--~~v~s~~---GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ 150 (701)
T PLN02225 79 LDSIETPLQLKNLSVKELKLLAD---EIRTELH--SVLWKKT---QKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQ 150 (701)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHHH--HHhhccc---CCCcCCCccHHHHHHHHHHHhCCCCCceeeccccc
Confidence 55667788889999999998854 4676532 233 234 4777789999999999999997 8898876 677
Q ss_pred hHHHHHHcCCCHHHHHHHHhCCCCCC-CCCCCCccCCccC---CCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEE
Q 018037 123 DHCTFLGRGGTLLEVFSELMGRKDGC-SHGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFAL 198 (362)
Q Consensus 123 ~h~~~l~rG~~~~~~lael~g~~~g~-~~Grggs~H~~~~---~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~ 198 (362)
+..|-+..|.- ... ++-.+|-.-|.++ ++.. .+.||-+..+++|+|+|.|..+++.++.||++
T Consensus 151 ~Y~HKiLTGR~------------~~f~~Rq~~GlsGf~~r~ES~~D~-f~~GHssTSiSaalG~a~ardl~g~~~~vvaV 217 (701)
T PLN02225 151 TYAHKVLTRRW------------SAIPSRQKNGISGVTSQLESEYDS-FGTGHGCNSISAGLGLAVARDIKGKRDRVVAV 217 (701)
T ss_pred cchhhHhcCCh------------hhcCccccCCcCCCCCCCCCCCCC-CCCChHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 77777755533 211 1222232222222 2222 36799999999999999999999999999999
Q ss_pred eCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccc--------ccc-------ccCCc------------------
Q 018037 199 YGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA--------EWR-------AAKSP------------------ 245 (362)
Q Consensus 199 ~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~--------~~~-------~~~~~------------------ 245 (362)
+||||+.-|+.+||||.|...+-++|+|++||+++|+.+ ..- ...++
T Consensus 218 IGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~ 297 (701)
T PLN02225 218 IDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGK 297 (701)
T ss_pred EcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCH
Confidence 999999999999999999998999999999999999877 110 00000
Q ss_pred -----------------------hHhhhcCCcceE-EEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018037 246 -----------------------SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (362)
Q Consensus 246 -----------------------~~~~~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~ 294 (362)
-|.. +|+.++ .|||||++++.++++.+++. . +||+||+++|-+..
T Consensus 298 ~~~~~~~~~~~~~k~~~~~~~~~lFe~--lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 298 GMYEWAAKVDEYARGMVGPTGSTLFEE--LGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHHHHHHHHHHhhhccCCCccCcHHH--cCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 0111 233333 68999999999999998875 2 49999999998876
|
|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-17 Score=148.63 Aligned_cols=120 Identities=25% Similarity=0.249 Sum_probs=94.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|+||+++|.|+|+++|. +++.|||+.|||++++. ..| |.+|++++||+++||.||+ |++.....+
T Consensus 54 ~~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~ 127 (202)
T cd02006 54 GQAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM-IEE-LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMD 127 (202)
T ss_pred CCccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc-HHH-HHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCc
Confidence 35699999999999999986 68899999999998874 455 8999999999877666665 886432110
Q ss_pred --------c-------cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018037 241 --------A-------AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (362)
Q Consensus 241 --------~-------~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~ 294 (362)
. ...+||.+ +++|+++.+|+ ++.++.+++++|++.+++ ++|+|||+.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 128 YQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred cccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecccc
Confidence 0 01368887 45999999996 788999999999876554 89999999985543
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-17 Score=143.54 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=88.9
Q ss_pred ccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc--------
Q 018037 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------- 240 (362)
Q Consensus 170 g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~-------- 240 (362)
|.||+++|.|+|+++|. +++.+|+++|||+++++. ++|.+|+.+++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 99999999999999986 578999999999998873 459999999999988888776 887542211
Q ss_pred ---------ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 241 ---------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 241 ---------~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
....+||.+. ++|+++.+|++ ++++.+++++|++. ++|+|||+.+
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~~---~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALAE---GGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 0123678774 59999999985 88988888888753 8999999863
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=156.07 Aligned_cols=150 Identities=21% Similarity=0.282 Sum_probs=120.0
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhC-----CC-----CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYS-----KD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~-----~~-----~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|+||++++.|+|+|+|.++- ++ |..|+|++|||.+++|..+|+..+|..++|. +|++.++|+
T Consensus 109 ~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~ 188 (663)
T COG0021 109 PGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSND 188 (663)
T ss_pred CCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCC
Confidence 367788999999999999999998753 22 4589999999999999999999999999998 688899999
Q ss_pred cccccccccccCCchHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC-CCCC---CC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM-SDPG---ST 304 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~-~D~~---~~ 304 (362)
.+|....+... ..|..+| +||...+ .+||+|++++.+|+++|+.. +++|++|+|+|.-.+|-.. .+.. -.
T Consensus 189 IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~--~dkPtlI~~kTiIG~Gsp~kegt~~~HGa 265 (663)
T COG0021 189 ISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS--TDKPTLIIVKTIIGKGSPNKEGTHKVHGA 265 (663)
T ss_pred ceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc--CCCCeEEEEEeeeecCCCCcCCCccccCC
Confidence 99988776655 4566664 5888888 67999999999999998862 2799999999988888654 2211 11
Q ss_pred CCChhhHHhHh
Q 018037 305 YRTRDEISGVR 315 (362)
Q Consensus 305 YR~~~e~~~~~ 315 (362)
=-.++|++..+
T Consensus 266 pLg~~ev~~~k 276 (663)
T COG0021 266 PLGEEEVAAAK 276 (663)
T ss_pred CCCHHHHHHHH
Confidence 22456666644
|
|
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.6e-17 Score=141.18 Aligned_cols=114 Identities=25% Similarity=0.340 Sum_probs=90.0
Q ss_pred ccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccc-----
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEW----- 239 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~----- 239 (362)
.++.|+||+++|.|+|++++. +++.+|+++|||++.+ ..++|++|+.+++|+++||.||++ ++.....
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 456799999999999999986 4789999999999987 457899999999999888888875 4433221
Q ss_pred -----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 240 -----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
.....++|.+. ++|+++++|+ +++++.++++++.+. ++|+|||+.|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~~~---~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEALAA---GGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 12234577774 5999999997 477888888777643 9999999975
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=157.04 Aligned_cols=223 Identities=22% Similarity=0.207 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccccCcchH-HHHHHHHhcCCC------CCEEEcCchhHHHHH
Q 018037 60 TPKELLSFFRQMATMRRMEIAADSLYKAKL----VRGFCHLYDGQE-AVAIGMEAGITK------KDSIITAYRDHCTFL 128 (362)
Q Consensus 60 s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~----i~gf~h~~~GqE-a~~vg~~~~l~~------~D~v~~~yR~h~~~l 128 (362)
.+.++.+-....++...++. ..+.+. +.|+.-.+.+-- -..++....|+. +|.|++ .+|+...
T Consensus 76 g~~~~e~~i~~~iR~~a~~m----v~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~ 149 (891)
T PRK09405 76 GDLELERRIRSYIRWNAAAM----VLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPG 149 (891)
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHH
Confidence 35556655555554444433 223332 334333333332 233666667764 688775 3665522
Q ss_pred ------HcCC-CHHHHHHHHhCCCCCCCCCCCCcc--CCcc-CCCCcccCCccccchhHHHHHHHHHHhh-------CCC
Q 018037 129 ------GRGG-TLLEVFSELMGRKDGCSHGKGGSM--HFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKY-------SKD 191 (362)
Q Consensus 129 ------~rG~-~~~~~lael~g~~~g~~~Grggs~--H~~~-~~~~~~~~~g~lG~~~p~A~G~A~A~k~-------~~~ 191 (362)
..|. +.++ |..+ .+. +.|.|-+. |... |+ .+...+++||.+.+.|+|.|++.|| .+.
T Consensus 150 lYA~~~l~G~l~~e~-L~~f-R~~---~~g~gl~syPhp~~~p~-~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~ 223 (891)
T PRK09405 150 IYARAFLEGRLTEEQ-LDNF-RQE---VDGKGLSSYPHPWLMPD-FWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTS 223 (891)
T ss_pred HHHHHHHcCCCCHHH-HHHh-cCC---CCCCCCCCCCCcCCCCC-CeecCccccchhHHHHHHHHHhCccccccccccCC
Confidence 2354 3333 3222 222 12222233 3221 21 2345689999999999999999994 456
Q ss_pred CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccC-CchHhh--hcCCcceEEE--------
Q 018037 192 ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKV-------- 259 (362)
Q Consensus 192 ~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~-~~~~~~--~g~gi~g~~V-------- 259 (362)
++.|+|++|||.++||+.|||+.+|+.++|. +||||++|...+..+...... ..++.+ +++|...+.|
T Consensus 224 ~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~ 303 (891)
T PRK09405 224 DQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDP 303 (891)
T ss_pred CceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchh
Confidence 7899999999999999999999999999998 689999999988777654211 234444 4577777888
Q ss_pred ------------------e-------------------------------------------CCCHHHHHHHHHHHHHHh
Q 018037 260 ------------------D-------------------------------------------GMDALAVKQACKFAKEHA 278 (362)
Q Consensus 260 ------------------d-------------------------------------------G~D~~av~~a~~~A~~~a 278 (362)
| |||+.+|++|++.|.+.
T Consensus 304 l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~- 382 (891)
T PRK09405 304 LLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH- 382 (891)
T ss_pred hhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-
Confidence 4 99999999999988863
Q ss_pred ccCCCEEEEEEEecCCCC
Q 018037 279 LKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 279 r~~gP~lIe~~tyR~~GH 296 (362)
+++|++|.++|.+.+|.
T Consensus 383 -~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 383 -KGQPTVILAKTIKGYGM 399 (891)
T ss_pred -CCCCEEEEEeceecCCC
Confidence 37899999999999997
|
|
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=140.61 Aligned_cols=115 Identities=25% Similarity=0.323 Sum_probs=90.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|.||+++|+|+|+++|. +++.+|+++|||++.++ +.| |.+++.+++|+++||.||+ |++.....
T Consensus 48 ~~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~ 121 (178)
T cd02014 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQP 121 (178)
T ss_pred CCCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCC
Confidence 35699999999999999885 67899999999999986 677 8889999999988877775 88743211
Q ss_pred ---cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. ++|+++.+++ +++++.++++++++. ++|+|||+.+.+
T Consensus 122 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~~---~~p~liev~~~~ 174 (178)
T cd02014 122 EFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALAA---DGPVVIDVVTDP 174 (178)
T ss_pred ceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 01124688774 5999999997 677888877777653 899999999854
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.4e-16 Score=138.74 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=88.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccccc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRA---- 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~~---- 241 (362)
...|.||+++|.|+|+++|. +++.||++.|||++.+.. .++|.+|+.+++|+++||.|| .|++...+...
T Consensus 48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 45799999999999999996 578899999999987532 466999999999987555555 57764322210
Q ss_pred -----cCCchHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 -----AKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 -----~~~~~~~~~--g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
...+||.+. ++|+++++| ++.|..++.+++++|++. ++|+||++..
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~---~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAV---PGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 023578774 599999999 677888777888888753 8999999864
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=157.40 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=112.7
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC-CCeEEEEeCCcccccchHHHHHHHHHhCCCCe-EEEEEcCCcccccccccc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGTAEWRA 241 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~-~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPv-IfVv~NN~~gi~t~~~~~ 241 (362)
++..++|++|++++.|+|+|++.|+.+. +..|+|++|||++++|+.|||+++|..|+|.. |+|.+||+.+++++....
T Consensus 112 ~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~ 191 (632)
T KOG0523|consen 112 GVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLG 191 (632)
T ss_pred CceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCccc
Confidence 3456789999999999999999999888 89999999999999999999999999999995 677888889999888776
Q ss_pred cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 242 AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 242 ~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
...+-+..| +||+..+.|||+|++++.+++.+|+.- +++|++|-+.|+...|-
T Consensus 192 ~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~--k~kpt~i~~~t~~g~G~ 246 (632)
T KOG0523|consen 192 FDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSV--KGKPTAIKATTFIGRGS 246 (632)
T ss_pred ccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhc--cCCceeeeeeeeeecCc
Confidence 644333323 489999999999999999999888731 38999999999998874
|
|
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-16 Score=140.46 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=90.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE-cCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~-NN~~gi~t~~~------ 239 (362)
++.|.||+++|.|+|+++|. +++.||++.|||++.+. ..| |.+|+++++|+|+||. |++|++.....
T Consensus 45 ~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~-~~e-L~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~ 118 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN-SQE-LETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGR 118 (177)
T ss_pred CCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH-HHH-HHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 46789999999999999985 68899999999998764 344 8899999999876655 55588643211
Q ss_pred ---cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 119 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~ 171 (177)
T cd02010 119 DSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALAA---DGVHVIDCPVDY 171 (177)
T ss_pred cccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecc
Confidence 0112458877 46999999996 789999999988764 999999999854
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-16 Score=141.44 Aligned_cols=116 Identities=20% Similarity=0.162 Sum_probs=90.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEE-EEEcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAIL-VCENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIf-Vv~NN~~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||++.|||++.++ ..| |.+|+++++|+++ |++||+|++......
T Consensus 45 ~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 118 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML-HSE-IVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSG 118 (205)
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc-HHH-HHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCc
Confidence 45799999999999999985 68899999999998874 444 8899999999865 555556886321110
Q ss_pred -------c-----------cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 241 -------A-----------AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 241 -------~-----------~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
. ...+||.+. ++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIeV~v~~~ 186 (205)
T cd02003 119 SFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKAS---DRTTVIVIKTDPK 186 (205)
T ss_pred cccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeecc
Confidence 0 123688774 5999999995 899999999988753 9999999999663
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=140.39 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=97.5
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC-CCCeEEEEEcC-Cccccccccc-ccCC
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCENN-HYGMGTAEWR-AAKS 244 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~-~LPvIfVv~NN-~~gi~t~~~~-~~~~ 244 (362)
..|.||+++|+|+|+++|. +++.|||++|||++++. ..| |.+++.+ ++|+++||.|| +|++...+.. ....
T Consensus 55 ~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~ 128 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ-LGA-LGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQT 128 (202)
T ss_pred eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH-HHH-HHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCC
Confidence 3689999999999999986 68899999999998763 344 8888876 78988777766 5886432211 1134
Q ss_pred chHhh--hcCCcc-eEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCChhhHHh
Q 018037 245 PSYYK--RGDYVP-GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (362)
Q Consensus 245 ~~~~~--~g~gi~-g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~ 313 (362)
+||.+ +++|++ +.+|+ ++.++..+++++++. ++|+|||+.+.+. .+.+...|+|.|++.
T Consensus 129 ~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~~-----~~~~~~~~~~~~~~~ 190 (202)
T PRK06163 129 VDVVAIARGAGLENSHWAA--DEAHFEALVDQALSG---PGPSFIAVRIDDK-----PGVGTTERDPAQIRE 190 (202)
T ss_pred CCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecCC-----CCCCCCCCCHHHHHH
Confidence 78887 459998 67885 888999999988754 9999999998643 233344677777664
|
|
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=138.04 Aligned_cols=116 Identities=18% Similarity=0.107 Sum_probs=88.7
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCC-CeEEEEEcCC-cccccccccccCCch
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSPS 246 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~L-PvIfVv~NN~-~gi~t~~~~~~~~~~ 246 (362)
+|+||+++|.|+|+++|. +++.||+++|||++.+. .++|.+++.+++ |+++||.||+ |++...+......+|
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999986 67889999999998763 345899999997 5766655555 776432222223468
Q ss_pred Hhhh--cCCcce-EEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 247 YYKR--GDYVPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 247 ~~~~--g~gi~g-~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
|.+. ++|+++ .+|+ ++.++.+++++|++. ++|+|||+.+.+..+
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~~~~~~~ 167 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALAA---DGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHhC---CCCEEEEEEecCCCC
Confidence 8874 599987 4786 788999999888753 899999999976544
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=134.87 Aligned_cols=114 Identities=24% Similarity=0.244 Sum_probs=87.9
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCC-CeE-EEEEcCCccccccccccc-CCc
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAI-LVCENNHYGMGTAEWRAA-KSP 245 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~L-PvI-fVv~NN~~gi~t~~~~~~-~~~ 245 (362)
.|+||+++|.|+|+++|.+ +.|||++|||++.++ . .+|.+++.+++ |++ +|++||+|++...+.... ..+
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~-~-~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN-L-GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC-H-HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999863 789999999998653 2 34778889985 665 556777788764332222 256
Q ss_pred hHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 246 SYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 246 ~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
+|.+. ++|+++.+|+| +++++.+++++++ ++|+|||+.+.+..+
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~-----~gp~lIev~~~~~~~ 159 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL-----DGPSFIHVKIKPGNT 159 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc-----CCCEEEEEEEcCCCC
Confidence 88874 59999999987 7888888777765 789999999966443
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-16 Score=136.67 Aligned_cols=113 Identities=30% Similarity=0.478 Sum_probs=89.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
.+.+.||+++|.|+|+++|. +++.||+++|||++.+. +.| |.+++++++|+++||.||+ |++......
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~ 98 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFLMS-LQE-LATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGG 98 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH-GGG-HHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTST
T ss_pred CCccccCCHHHhhhHHHhhc----CcceeEEecCCcceeec-cch-hHHHhhccceEEEEEEeCCcceEeccccccCcCc
Confidence 46799999999999999984 78999999999998875 454 9999999999876666665 776433211
Q ss_pred -----c---cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 241 -----A---AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 241 -----~---~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
. ...+||.+ +++|+++.+|+..|++++.+++++|++. +||+|||+
T Consensus 99 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~---~gp~vIeV 153 (153)
T PF02775_consen 99 RFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALES---GGPAVIEV 153 (153)
T ss_dssp CHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHS---SSEEEEEE
T ss_pred ccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhC---CCcEEEEc
Confidence 1 33467877 4599999999877779999999999854 99999996
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=137.16 Aligned_cols=114 Identities=28% Similarity=0.425 Sum_probs=88.3
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc------cc
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------~~ 240 (362)
+.|.||+++|.|+|+++|. ++++||+++|||++.+. +.| |.+|+++++|+++||.||+ |++.... ..
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~~e-L~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 4689999999999999986 67899999999998874 555 9999999999877666665 6653211 00
Q ss_pred -----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~ 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALAS---DGPVLLDVLVDP 175 (186)
T ss_pred eeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 112468877 45999999997 477887777777653 899999999965
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-15 Score=157.70 Aligned_cols=200 Identities=19% Similarity=0.162 Sum_probs=144.9
Q ss_pred ccccccccCcchHHHHHHHHhcCCCC--CEEEcCchhHHHHHH------cC--------CCHHHH-HHHHhCCCCCCCCC
Q 018037 89 LVRGFCHLYDGQEAVAIGMEAGITKK--DSIITAYRDHCTFLG------RG--------GTLLEV-FSELMGRKDGCSHG 151 (362)
Q Consensus 89 ~i~gf~h~~~GqEa~~vg~~~~l~~~--D~v~~~yR~h~~~l~------rG--------~~~~~~-lael~g~~~g~~~G 151 (362)
+..|++-.+.|+-.+-+.+...+++. |.++-.--|||..+. -| ++..+. |..+|-+- +. .|
T Consensus 47 r~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf-s~-pg 124 (785)
T PRK05261 47 RLLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF-SF-PG 124 (785)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc-cC-CC
Confidence 45687777899998877777777764 644443346765331 25 333221 33233211 11 11
Q ss_pred CCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchH---HHHHHHHHhCCCC-eEEEE
Q 018037 152 KGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVC 227 (362)
Q Consensus 152 rggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~---~Ealn~A~~~~LP-vIfVv 227 (362)
|.+.|......++...+|.+|++++.|+|+|+. +++.+++|++|||++++|.+ |++.+++.-.++. |+.|+
T Consensus 125 -g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIl 199 (785)
T PRK05261 125 -GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPIL 199 (785)
T ss_pred -CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEE
Confidence 345787655568888999999999999999975 47889999999999999984 8877777777777 56788
Q ss_pred EcCCccccccccccc-CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHh-----------cc----CCCE--EEE
Q 018037 228 ENNHYGMGTAEWRAA-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHA-----------LK----NGPM--ILE 287 (362)
Q Consensus 228 ~NN~~gi~t~~~~~~-~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~a-----------r~----~gP~--lIe 287 (362)
++|+|+|++++.... ...++.+ ++||++.+.|||+|+.++++++++|++.+ |. .+|. +|.
T Consensus 200 d~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii 279 (785)
T PRK05261 200 HLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIV 279 (785)
T ss_pred EecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEE
Confidence 899999999988653 3356666 46999999999999999998877666543 32 3788 999
Q ss_pred EEEecCCC
Q 018037 288 MDTYRYHG 295 (362)
Q Consensus 288 ~~tyR~~G 295 (362)
++|.+.+|
T Consensus 280 ~rT~kG~g 287 (785)
T PRK05261 280 LRTPKGWT 287 (785)
T ss_pred EECCccCC
Confidence 99999877
|
|
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=133.07 Aligned_cols=111 Identities=20% Similarity=0.144 Sum_probs=87.0
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC-CCCeEEEE-EcCCcccccccccccCCch
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVC-ENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~-~LPvIfVv-~NN~~gi~t~~~~~~~~~~ 246 (362)
.|+||+++|.|+|+++|. + +.|||+.|||++.+. ..| |.+++.+ ++|+++|| +|+.|++...+......+|
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~~e-l~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-PGV-LLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-ccH-HHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2 789999999998653 344 7888888 59987666 5555886432222223578
Q ss_pred Hhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 247 YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 247 ~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
|.+. ++|+++.+|+ +++++.+++++|++. ++|++||+.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLAT---TGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHhC---CCCEEEEEEec
Confidence 8874 5999999985 799999999998863 89999999874
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=134.63 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=90.7
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeE-EEEEcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAI-LVCENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvI-fVv~NN~~gi~t~~~~----- 240 (362)
+..|.||+++|.|+|+++|. +++.||+++|||++.+ .++| |.+++.+++|++ +|++||+|++......
T Consensus 47 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~ 120 (183)
T cd02005 47 PLWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASY 120 (183)
T ss_pred cchhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCc
Confidence 45699999999999999986 5789999999999976 4777 778999999975 5566667886432211
Q ss_pred -ccCCchHhhh--cCC----cceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -AAKSPSYYKR--GDY----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -~~~~~~~~~~--g~g----i~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. ++| +++++|+ ++.++.++++++++ +.++|+|||+.+.+
T Consensus 121 ~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~--~~~~p~liev~~~~ 175 (183)
T cd02005 121 NDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF--NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh--cCCCcEEEEEEcCc
Confidence 1124678774 588 7888885 79999999999887 23899999999865
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=156.98 Aligned_cols=118 Identities=27% Similarity=0.323 Sum_probs=95.7
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccc-c------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTA-E------ 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~-~------ 238 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.|| .|++... +
T Consensus 404 ~~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~ 477 (535)
T PRK07524 404 TGYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIE 477 (535)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCC
Confidence 34699999999999999985 78899999999999864 666 999999999998777776 6885421 1
Q ss_pred --ccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 239 --WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 239 --~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
......+||.+. ++|+++.+|+ +++++.++++++++. ++|+|||+.++|+.+
T Consensus 478 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~~~~ 533 (535)
T PRK07524 478 PVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFAR---PGPTLIEVDQACWFA 533 (535)
T ss_pred ccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEECCcccc
Confidence 111235688874 5999999996 888998888888764 999999999999876
|
|
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-15 Score=132.70 Aligned_cols=111 Identities=24% Similarity=0.318 Sum_probs=85.7
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCC-CCeEEEEEcCC-ccccccccccc-CCc
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCENNH-YGMGTAEWRAA-KSP 245 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~-LPvIfVv~NN~-~gi~t~~~~~~-~~~ 245 (362)
.|+||+++|.|+|+++|. ++.|||+.|||++.++ . ++|.+++.++ +|+++||.||+ |++...+.... ..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~-~-~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN-L-GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh-h-hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 799999999999999984 6789999999998875 3 4488999999 59887776665 88654222111 256
Q ss_pred hHhh--hcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 246 SYYK--RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 246 ~~~~--~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
||.+ +++|+++.+ |+ ++.++.++++ +++ .++|+|||+.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~---~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA---MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc---CCCCEEEEEEeCC
Confidence 8887 459999988 74 7888888885 553 2899999999854
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=155.05 Aligned_cols=116 Identities=25% Similarity=0.352 Sum_probs=94.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccccC--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAK-- 243 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~~-- 243 (362)
++.|+||+++|.|+|+++|. +++.|||+.|||++++. ..| |.+|+++++|+++||.||+ ||+.........
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~-~qE-L~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN-GQE-LETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc-HHH-HHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 57899999999999999986 78999999999999874 555 9999999999988777776 787544322111
Q ss_pred -------Cch-Hhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 244 -------SPS-YYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 244 -------~~~-~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.+. |.+ .+||+++++|+ +++++.+++++|++. ++|+|||+.+.+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~~---~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALAS---DGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecCc
Confidence 112 766 45999999997 899999999999875 9999999999775
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.4e-15 Score=151.44 Aligned_cols=113 Identities=24% Similarity=0.259 Sum_probs=89.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc-c-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-W----- 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~-~----- 239 (362)
+..|+||+++|.|+|+++|. +++.|||+.|||++++. .+| |.+|++++||+++||.||+ |++.... .
T Consensus 386 ~~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~qE-L~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~ 459 (518)
T PRK12474 386 LTGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGAQ 459 (518)
T ss_pred cCCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch-HHH-HHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCC
Confidence 34599999999999999996 78899999999999874 455 9999999999876666665 8864211 0
Q ss_pred ---c--------ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 240 ---R--------AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 240 ---~--------~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
+ ....+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.+
T Consensus 460 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~~---~~p~liev~~ 518 (518)
T PRK12474 460 GAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMAQ---RGPRLIEAMI 518 (518)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEC
Confidence 0 011247887 45999999996 788999999888753 9999999964
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-15 Score=154.28 Aligned_cols=118 Identities=26% Similarity=0.243 Sum_probs=93.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|+++++|+++||.||+ ||+......
T Consensus 415 ~~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~ 488 (588)
T TIGR01504 415 GQAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-IEE-LAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMD 488 (588)
T ss_pred CccccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccc
Confidence 34699999999999999986 78899999999999885 455 9999999999876655554 886321110
Q ss_pred -----cc----------CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 241 -----AA----------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 241 -----~~----------~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
.. ..+||.+. ++|+++.+|+ +++++.+++++|++.+.+ ++|+|||+.+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 489 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13688874 5999999995 789999999999875544 999999999854
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-15 Score=153.27 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=93.2
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc-----c-
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R- 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~-----~- 240 (362)
..|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ |++..... .
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~ 502 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT-GMD-FETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECCccceeehhhhhhcCcc
Confidence 4689999999999999986 68899999999999874 455 9999999999887666665 88532211 0
Q ss_pred --ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 --AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 --~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. +||+++.+|+ +++++.+++++|+++.+.++|+|||+.+.+
T Consensus 503 ~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~~~p~lIev~v~~ 556 (565)
T PRK06154 503 RATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKEGTPALLEVITSE 556 (565)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccCCCeEEEEEEeCh
Confidence 0123688874 5999999996 799999999999875445889999998844
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-15 Score=132.03 Aligned_cols=111 Identities=21% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~------ 240 (362)
+.+.||+++|.|+|+++|. ++.||+++|||++.+. ..| |.+|+++++|+++||.|| .|++......
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~~e-L~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~ 121 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-LNG-LLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDE 121 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-HHH-HHhccccCCCeEEEEEECCCCchheeccCCcccch
Confidence 4588999999999999984 5789999999998874 444 889999999987655555 4775321110
Q ss_pred ---cc---CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 241 ---AA---KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 241 ---~~---~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
.. ..+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+
T Consensus 122 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~v 174 (175)
T cd02009 122 FERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALAQ---DGPHVIEVKT 174 (175)
T ss_pred hhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 11 2468887 45999999996 789999999888753 8999999975
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=130.55 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=85.7
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-c----
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-A---- 241 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~-~---- 241 (362)
.+.||+++|+|+|+++|. +++.||++.|||+ ++++ +.| |.+|+++++|+++||.||+ |++...+.. .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~-~~e-L~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG-GNH-FIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc-HHH-HHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 488999999999999985 7899999999999 5554 455 8999999999987666665 786542211 0
Q ss_pred -----------cCCchHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 -----------AKSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 -----------~~~~~~~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
...+||.+ +++|++++ ++.-.++.++.+++++|++. ++|+|||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~~---~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQH---KGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHhc---CCCEEEEEEC
Confidence 01257776 45898885 22335899999999998864 9999999975
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=152.29 Aligned_cols=115 Identities=26% Similarity=0.387 Sum_probs=91.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. ++| |.+|++++||++|||.||+ |++.....
T Consensus 419 ~~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~ 492 (570)
T PRK06725 419 GGLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYEN 492 (570)
T ss_pred CCcccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCC
Confidence 45599999999999999985 68899999999999764 666 9999999999988777776 67532111
Q ss_pred ----cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ----RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ----~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~id~ 546 (570)
T PRK06725 493 RLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFAH---EGPVVVDFCVEE 546 (570)
T ss_pred ccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 0112468887 45999999995 888988888888754 999999999854
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=151.34 Aligned_cols=118 Identities=23% Similarity=0.212 Sum_probs=95.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc-------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE------- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~------- 238 (362)
++.|.||+++|.|+|+++|. +++.||+++|||+++++...++|++|+++++|+++||.|| +|++....
T Consensus 427 ~~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~ 502 (569)
T PRK08327 427 GSAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPE 502 (569)
T ss_pred CCCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcc
Confidence 34689999999999999874 7899999999999988754457999999999998777777 58864211
Q ss_pred ----------cccc-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 239 ----------WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 239 ----------~~~~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
.... ..+||.+. ++|+++.+|+ +++++.+++++|++..++ +||+|||+.+
T Consensus 503 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 503 GYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0011 34678774 5999999996 899999999999987777 7899999986
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=150.58 Aligned_cols=116 Identities=27% Similarity=0.317 Sum_probs=92.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc------c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------~ 239 (362)
+..|+||+++|.|+|+++|. +++.|||++|||+++++ +.| |.+|+++++|+++||.||+ |++.... .
T Consensus 405 ~~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~ 478 (578)
T PRK06546 405 FRHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLP 478 (578)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCC
Confidence 34689999999999999986 67899999999999874 555 8999999999987777776 6764210 0
Q ss_pred ---cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 240 ---~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.....+||.+. ++|+++.+|+ +++++.+++++|++. +||+|||+.+.+.
T Consensus 479 ~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIev~~~~~ 532 (578)
T PRK06546 479 DFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFAH---PGPALVDVVTDPN 532 (578)
T ss_pred cccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCCC
Confidence 11235688874 5999999996 799999999988764 9999999998543
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-14 Score=134.32 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=91.0
Q ss_pred ccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc---
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR--- 240 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~--- 240 (362)
++..++||+++|.|+|++++. +++.||++.|||++ .++ +.| |.+|+++++|+++||.||+ ||+...+..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a~----p~r~VV~i~GDG~~~~m~-~~e-L~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGRG----KDITVVAFAGDGGTADIG-FQA-LSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhccC----CCCeEEEEEcCchHHhhH-HHH-HHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 445589999999999987664 68899999999995 565 455 9999999999988888877 785321110
Q ss_pred ------------------ccCCchHhh--hcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 241 ------------------AAKSPSYYK--RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 241 ------------------~~~~~~~~~--~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
....+||.+ +++|++++. +.-.+++++.+++++|++. ++|+|||+.+.=...|
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~---~gP~lIev~~~C~~~~ 205 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI---EGPAYIHILSPCPTGW 205 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCC
Confidence 012357877 459998863 4556899999999998875 8999999986443333
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=152.24 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=93.7
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~------ 240 (362)
+.|+||+++|.|+|+++|. +++.||+++|||+++++ ..| |.+|+++++|+++||.|| +|++......
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 5699999999999999985 67899999999999886 566 889999999987666555 6886321110
Q ss_pred ----cc-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 241 ----~~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
.. ..+||.+. ++|+++++|+ +++++.++++++++..++++|+|||+.+.+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQNEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 01 23588874 5999999996 78899999999987543379999999997644
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=150.98 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=94.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|++++||+++||.||+ |++.....
T Consensus 418 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~ 491 (574)
T PRK07979 418 GGLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN-IQE-LSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSG 491 (574)
T ss_pred CCccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCC
Confidence 45699999999999999986 67899999999999874 445 9999999999877766665 77632110
Q ss_pred ---cc--cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RA--AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~--~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+ ++||+++.+|+ +++++.+++++|++.++.++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 492 RHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred ccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 01 12468887 45999999995 789999999999886545899999999965
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-14 Score=149.09 Aligned_cols=118 Identities=24% Similarity=0.347 Sum_probs=93.2
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~------ 240 (362)
..|+||+++|.|+|++++. +++.|||++|||+++++ + ++|.+|++++||+++||.|| +|++.....+
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~-~-~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~ 473 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG-V-QELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGR 473 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCC
Confidence 4699999999999999875 68899999999999986 4 55999999999988776666 5886432111
Q ss_pred ----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 241 ----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
....+||... +||+++.+|+ +++++.++++++++. ++|+|||+.++|...+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i~~~~~~ 530 (542)
T PRK08266 474 VVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALAH---GGPVLIEVPVPRGSEA 530 (542)
T ss_pred cccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHhC---CCcEEEEEEecCCCCc
Confidence 0124688874 5999999997 577888888887753 8999999999887554
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=151.41 Aligned_cols=115 Identities=20% Similarity=0.363 Sum_probs=92.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||++.|||++++. +.| |.+|++++||+++||.||+ |++.....
T Consensus 427 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~ 500 (595)
T PRK09107 427 GGLGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC-IQE-MSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGN 500 (595)
T ss_pred CCchhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 34599999999999999986 78899999999999874 455 9999999999987777776 77532110
Q ss_pred ---cc--cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RA--AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~--~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 501 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 555 (595)
T PRK09107 501 RLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMIDV---DKPVIFDCRVAN 555 (595)
T ss_pred ccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 01 12368887 45999999995 788999999888864 899999999965
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=147.38 Aligned_cols=113 Identities=27% Similarity=0.282 Sum_probs=87.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
+..|.||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| +|++.....
T Consensus 382 ~~~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~E-L~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~ 455 (514)
T PRK07586 382 LTGGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT-IQA-LWTQARENLDVTTVIFANRAYAILRGELARVGAG 455 (514)
T ss_pred cCCcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH-HHH-HHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCC
Confidence 33589999999999999986 68899999999999874 454 999999999987665555 588632100
Q ss_pred ----------c-ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 240 ----------R-AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 240 ----------~-~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
. ....+||.+ ++||+++.+|+ ++.++.+++++|++. ++|+|||+.+
T Consensus 456 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~~---~~p~liev~~ 514 (514)
T PRK07586 456 NPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALAE---PGPHLIEAVV 514 (514)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEC
Confidence 0 012358887 45999999996 788998888888753 8999999963
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=146.41 Aligned_cols=113 Identities=28% Similarity=0.342 Sum_probs=89.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
+..|.||+++|.|+|+++|. +++.|||++|||+++++ . ++|++|+.+++|+++||.||+ |++.....
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~ 477 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS-I-QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVR 477 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh-H-HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCC
Confidence 44689999999999999985 67899999999999986 3 569999999999988887777 88642211
Q ss_pred ----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 240 ----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
......||.+. +||+++.+|+ ++.++.+++++|.+. ++|+|||+.+
T Consensus 478 ~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~~ 529 (530)
T PRK07092 478 DVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALAA---DGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEc
Confidence 11134678774 5999999997 577887777776642 8999999976
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=133.76 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=95.0
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
..|.+|.++|+|+|+++|. +++.||++.|||++ ..| ..| |.+|+++++|+++||.||+ ||+...+..
T Consensus 68 ~~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg-~~e-L~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~ 141 (301)
T PRK05778 68 LHTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG-GGH-FIHAGRRNIDITVIVENNGIYGLTKGQASPTTPE 141 (301)
T ss_pred cchhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc-HHH-HHHHHHHCCCcEEEEEeCchhhcccCcccCCcCC
Confidence 3488999999999999986 78899999999996 465 344 8899999999887777665 787543211
Q ss_pred --c---------cCCchHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCCCCCCCCCCC
Q 018037 241 --A---------AKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHGHSMSDPGST 304 (362)
Q Consensus 241 --~---------~~~~~~~~~--g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--yR~~GHs~~D~~~~ 304 (362)
. ...+||... ++|+.++ ++.-.++.++.+++++|+++ +||+|||+.+ .-+++.. +.
T Consensus 142 g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~---~GpalIeV~~~C~~~~~~~-----~~ 213 (301)
T PRK05778 142 GSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAISH---KGFAFIDVLSPCVTFNGRN-----TS 213 (301)
T ss_pred CcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCCcC-----Cc
Confidence 0 013477764 5888876 33345899999999999865 9999999874 2333322 23
Q ss_pred CCChhhHHhH
Q 018037 305 YRTRDEISGV 314 (362)
Q Consensus 305 YR~~~e~~~~ 314 (362)
.+++.++.+|
T Consensus 214 ~~~~~~~~~~ 223 (301)
T PRK05778 214 TKSPAYMREY 223 (301)
T ss_pred ccCHHHHHHH
Confidence 4556666666
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-14 Score=147.38 Aligned_cols=118 Identities=23% Similarity=0.271 Sum_probs=91.4
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc---
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW--- 239 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~--- 239 (362)
.+.++.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.|| +|++.....
T Consensus 399 ~~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~ 472 (544)
T PRK07064 399 NVHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN-LGE-LATAVQENANMVIVLMNDGGYGVIRNIQDAQ 472 (544)
T ss_pred eeccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEeCChhHHHHHHHHHh
Confidence 34444589999999999999985 68899999999999874 454 999999999987665555 588643111
Q ss_pred -------cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -------RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -------~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.++.
T Consensus 473 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~~~~ 529 (544)
T PRK07064 473 YGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALAK---EGPVLVEVDMLS 529 (544)
T ss_pred cCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEccc
Confidence 0112468887 45999999996 788999999888753 899999999863
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=147.46 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=90.7
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc-----cc
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-----WR 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~-----~~ 240 (362)
++.|+||+++|.|+|+++|. +++.||++.|||++++. ..| |.+|++++||+++||.|| +|++.... .+
T Consensus 405 ~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~ 478 (539)
T TIGR02418 405 NGMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQR 478 (539)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 35689999999999999986 67899999999999874 555 999999999987655555 58864211 11
Q ss_pred ----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ ++||+++.+|+ ++.++.+++++|++. ++|+|||+.+.+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 531 (539)
T TIGR02418 479 SSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAMEV---EGPVVVDIPVDY 531 (539)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 112468887 46999999996 788999999888764 899999999865
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=147.77 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=91.1
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc-cc-----
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-WR----- 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~-~~----- 240 (362)
+.|+||+++|.|+|+++|. +++.||++.|||++++. ++| |.+|+++++|+++||.|| .|++.... ..
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 478 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYD 478 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCc
Confidence 4689999999999999986 78899999999998874 566 999999999987666655 58863211 11
Q ss_pred ----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ .+||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~~~~ 531 (542)
T PRK05858 479 VAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFAS---GVPYLVNVLTDP 531 (542)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCcEEEEEEECC
Confidence 113468887 45999999996 788999999988763 899999999954
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-14 Score=149.49 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=93.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc-----c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~-----~ 240 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ ||+..... .
T Consensus 416 ~~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~ 489 (591)
T PRK11269 416 GQAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMD 489 (591)
T ss_pred CccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccC
Confidence 45699999999999999985 67899999999999874 555 9999999999987777776 77532110 0
Q ss_pred ---cc------------CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 241 ---AA------------KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 241 ---~~------------~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
.. ..+||.+ ++||+++.+|+ +++++.+++++|++...+ +||+|||+.+.+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 490 YCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 1368887 45999999995 899999999999875544 899999999864
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-14 Score=149.85 Aligned_cols=115 Identities=24% Similarity=0.332 Sum_probs=91.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++.....+
T Consensus 431 ~~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~ 504 (616)
T PRK07418 431 AGLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGE 504 (616)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45699999999999999986 78899999999999874 555 9999999999987766665 776332111
Q ss_pred ---c--c--CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ---A--A--KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ---~--~--~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . ..+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 505 ~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 560 (616)
T PRK07418 505 RYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALAH---DGPVLIDVHVRR 560 (616)
T ss_pred CceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 0 0 24688874 5999999996 888999999888763 899999999864
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=146.89 Aligned_cols=115 Identities=23% Similarity=0.316 Sum_probs=90.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.|| +||+.....
T Consensus 405 ~~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~ 478 (574)
T PRK09124 405 FNHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYL 478 (574)
T ss_pred CCcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCc
Confidence 46699999999999999986 68899999999999874 566 999999999987655555 588642100
Q ss_pred -cc--cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -RA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -~~--~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+. +||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~i~~ 531 (574)
T PRK09124 479 TDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFAH---DGPALVDVVTAK 531 (574)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 01 124688874 5999999996 788999999888753 899999999865
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-14 Score=147.86 Aligned_cols=116 Identities=23% Similarity=0.394 Sum_probs=91.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|+++++|+++||.||+ |++.....
T Consensus 434 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~e-L~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~ 507 (587)
T PRK06965 434 GGLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC-IQE-LSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSK 507 (587)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC-HHH-HHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45689999999999999996 68899999999999874 455 9999999999887666665 67532111
Q ss_pred c---c-c-CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R---A-A-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~---~-~-~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+ . . ..+||.+ +++|+++.+|+ ++.++.+++++|+++ .++|+|||+.+.+
T Consensus 508 ~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lieV~i~~ 563 (587)
T PRK06965 508 RYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL--KDRTVFLDFQTDP 563 (587)
T ss_pred CccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEecc
Confidence 1 0 1 2468887 45999999995 788999999998862 2789999999854
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-14 Score=148.12 Aligned_cols=119 Identities=24% Similarity=0.214 Sum_probs=93.1
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~------ 240 (362)
+.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| +|++......
T Consensus 428 ~~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~ 501 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS-MNE-IMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNR 501 (579)
T ss_pred ccccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCc
Confidence 4589999999999999985 68899999999999885 455 999999999987665555 5886421110
Q ss_pred ----ccCC-chHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 241 ----AAKS-PSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 241 ----~~~~-~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
.... +||.+. ++|+++.+|+ +++++.+++++|++..+.++|+|||+.+.+-.
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 502 FVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAEGKTTVIEIVCTREL 560 (579)
T ss_pred ceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCc
Confidence 0112 488874 5999999995 89999999999987543489999999996533
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-14 Score=146.94 Aligned_cols=115 Identities=21% Similarity=0.301 Sum_probs=92.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||++.|||++.+. ++| |.+|+++++|+++||.||+ |++......
T Consensus 416 ~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~ 489 (564)
T PRK08155 416 GGLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQ 489 (564)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCC
Confidence 34589999999999999986 67899999999999885 677 8899999999987777776 887432110
Q ss_pred -----c-cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -----A-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -----~-~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. ...+||.+. +||+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 490 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~~~~ 544 (564)
T PRK08155 490 RVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAINR---PGPALIHVRIDA 544 (564)
T ss_pred CeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 1 124688874 5999999996 688898888888753 899999999854
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-14 Score=147.56 Aligned_cols=115 Identities=24% Similarity=0.411 Sum_probs=90.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||++.|||++.+. ..| |.+|+++++|+++||.||+ |++.....
T Consensus 427 ~~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~ 500 (585)
T CHL00099 427 AGLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN-LQE-LGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGE 500 (585)
T ss_pred ccccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45699999999999999986 67899999999999874 455 9999999999987777776 66532110
Q ss_pred c------ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~------~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+ ....+||.+. ++|+++.+|+ +++++.+++++|++. ++|.|||+.+..
T Consensus 501 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~v~~ 556 (585)
T CHL00099 501 RYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALDY---DGPVLIDCQVIE 556 (585)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEECC
Confidence 0 1124688874 5999999996 688998888888763 899999999953
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-14 Score=146.16 Aligned_cols=114 Identities=23% Similarity=0.287 Sum_probs=89.5
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~------ 240 (362)
+.|.||+++|.|+|+++|. +++.|||++|||++++ ..+.|++|+++++|+++||.||+ ||+......
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~ 508 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTH 508 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCc
Confidence 4588999999999999885 6789999999999976 34569999999999988777776 565321111
Q ss_pred ----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.+.+
T Consensus 509 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIev~~~~ 561 (578)
T PRK06112 509 TDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMAA---PGPTLIEVITDP 561 (578)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEcCc
Confidence 0124678774 5999999996 688988888887753 899999999854
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-14 Score=145.87 Aligned_cols=115 Identities=25% Similarity=0.418 Sum_probs=91.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc------c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------~ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. +.| |.+|+++++|+++||.||+ |++.... .
T Consensus 409 ~~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~e-L~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~ 482 (558)
T TIGR00118 409 GGLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQE-LSTAVQYDIPVKILILNNRYLGMVRQWQELFYEE 482 (558)
T ss_pred CccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCC
Confidence 34589999999999999885 67899999999999884 555 9999999999988887776 5643210 0
Q ss_pred -----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 483 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~~~~ 537 (558)
T TIGR00118 483 RYSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALSS---NEPVLLDVVVDK 537 (558)
T ss_pred ceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 11124688875 5999999997 578999999888764 999999999965
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.9e-14 Score=145.59 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=90.6
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEE-EEcCCccccccc-----c--
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV-CENNHYGMGTAE-----W-- 239 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfV-v~NN~~gi~t~~-----~-- 239 (362)
..|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+++++++|+++| ++||+|++.... .
T Consensus 406 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~~e-L~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~ 479 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-MQD-LLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPL 479 (575)
T ss_pred CcchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCc
Confidence 4699999999999999985 78899999999999884 555 99999999998765 555558864211 0
Q ss_pred --cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 --RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 --~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+ ++||+++.+|+ +++++.++++++++ ...++|+|||+.+..
T Consensus 480 ~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~~~~~p~liev~i~~ 533 (575)
T TIGR02720 480 IGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-IKQGKPVLIDAKITG 533 (575)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-hCCCCcEEEEEEeCC
Confidence 0112468887 45999999996 68899999999885 223899999999854
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-14 Score=146.52 Aligned_cols=116 Identities=22% Similarity=0.386 Sum_probs=91.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|++++||+++||.||+ |++.....+
T Consensus 418 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~ 491 (572)
T PRK08979 418 GGLGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQG 491 (572)
T ss_pred CCcccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc-HHH-HHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 34689999999999999986 67899999999999874 455 9999999999876666555 776432110
Q ss_pred ----c-c-CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----A-A-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~-~-~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . ..+||.+ +++|+++.+|+ ++.++.+++++|++. +++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 547 (572)
T PRK08979 492 RHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM--KDRLVFVDINVDE 547 (572)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 0 1 2368887 45999999996 788999999988862 2899999999865
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-14 Score=145.95 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=88.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc----c-
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW----R- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~----~- 240 (362)
++.|+||+++|.|+|+++|. +++.|||+.|||++++. ..| |.+|+++++|+++||.|| +|++..... .
T Consensus 401 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~ 474 (539)
T TIGR03393 401 PLWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT-IQE-LGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 474 (539)
T ss_pred hhhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCc
Confidence 45699999999999999985 78899999999999874 455 999999999987555555 588643211 1
Q ss_pred -ccCCchHhh--hcCCcc----eEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 241 -AAKSPSYYK--RGDYVP----GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 241 -~~~~~~~~~--~g~gi~----g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
....+||.+ +++|++ +.+|+ ++.++.+++++|++. ++|+|||+.+.
T Consensus 475 ~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i~ 527 (539)
T TIGR03393 475 NDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAAH---ERLSLIEVVLP 527 (539)
T ss_pred CcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhcc---CCeEEEEEEcC
Confidence 123468877 458885 78985 788998888888754 99999999873
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=144.97 Aligned_cols=116 Identities=26% Similarity=0.369 Sum_probs=91.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||+.|||++.+. +.| |.+|++++||+|+||.||+ |++.....
T Consensus 411 ~~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~ 484 (563)
T PRK08527 411 GGLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEE 484 (563)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCC
Confidence 44599999999999999986 67889999999999884 666 9999999999887666665 77532111
Q ss_pred c-----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 240 R-----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 240 ~-----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
. ....+||.+ +++|+++++|+ +++++.+++++|++. ++|+|||+.+.+.
T Consensus 485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~v~~~ 540 (563)
T PRK08527 485 RYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALES---DKVALIDVKIDRF 540 (563)
T ss_pred ceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEECCc
Confidence 0 012357877 45999999996 788998888888753 8999999999763
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-14 Score=146.10 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=91.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.|| +|++.....
T Consensus 420 ~~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~ 493 (574)
T PRK06466 420 GGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEG 493 (574)
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCC
Confidence 45689999999999999986 68899999999999874 455 999999999987666555 588532110
Q ss_pred ---cc--cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RA--AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~--~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+ ++||+++.+|+ ++.++.+++++|++. +++|+|||+.+.+
T Consensus 494 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~--~~~p~lIev~i~~ 549 (574)
T PRK06466 494 RHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM--KDRLVFIDIYVDR 549 (574)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 01 12368887 45999999996 788999999988862 2899999999965
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=146.03 Aligned_cols=117 Identities=26% Similarity=0.300 Sum_probs=91.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC-----CCCeEEEEEcCC-ccccccc--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-----DLPAILVCENNH-YGMGTAE-- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~-----~LPvIfVv~NN~-~gi~t~~-- 238 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++....| |.+|+++ +||+++||.||+ |++....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~ 486 (597)
T PRK08273 412 GTLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQR 486 (597)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHH
Confidence 45689999999999999986 688999999999997743455 8899998 899987777665 7753211
Q ss_pred ---cc-------ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 239 ---WR-------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 239 ---~~-------~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.. ....+||.+. ++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+.
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~~~~~ 548 (597)
T PRK08273 487 VMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALAA---DRPVVLEVKTDPN 548 (597)
T ss_pred HhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCCC
Confidence 00 1124578774 5999999996 788999999888764 9999999999653
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=144.19 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=89.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCC-CCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW----- 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~-~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~----- 239 (362)
++.|.||+++|.|+|+++|. + ++.|||++|||++.+. ..| |.+|+.++||+++||.|| +|++.....
T Consensus 393 ~~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~-~~e-L~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~ 466 (549)
T PRK06457 393 AWLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT-MME-LITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGY 466 (549)
T ss_pred CCcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh-HHH-HHHHHHHCCCeEEEEEECCccchHHHHHHHhcC
Confidence 45799999999999999986 5 7899999999998874 445 899999999987655555 588642110
Q ss_pred ----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. +||+++.+|+ +++++..++++|++. ++|+|||+.+.+
T Consensus 467 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 520 (549)
T PRK06457 467 PEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLNT---KGPAVLDAIVDP 520 (549)
T ss_pred CcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCc
Confidence 01124688874 5999999996 789999999988753 899999999864
|
|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=131.74 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=84.9
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccccc-chHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc-----
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA----- 241 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~-G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~----- 241 (362)
.+++|.++|+|+|+++|. +++.||++.|||++.+ | ..| +.+|+++++|+++||.||+ ||+...+...
T Consensus 67 ~~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g-~~e-l~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g 140 (277)
T PRK09628 67 HTTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG-GNH-TIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG 140 (277)
T ss_pred eeccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh-HHH-HHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC
Confidence 358899999999999986 7899999999999753 3 333 6679999999987766665 7874321110
Q ss_pred -----------cCCchHhh--hcCCcceE---EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 242 -----------AKSPSYYK--RGDYVPGL---KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 242 -----------~~~~~~~~--~g~gi~g~---~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....||.+ .++|++++ +| .++.++.+++++|+++ +||+|||+.+.-
T Consensus 141 ~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v--~~~~el~~al~~Al~~---~Gp~lIeV~~~c 202 (277)
T PRK09628 141 MWTVTAQYGNIDPTFDACKLATAAGASFVARESV--IDPQKLEKLLVKGFSH---KGFSFFDVFSNC 202 (277)
T ss_pred ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEcc--CCHHHHHHHHHHHHhC---CCCEEEEEcCCC
Confidence 01235666 45899875 56 4899999999999875 999999997643
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=142.96 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=90.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccc-cccc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT-AEWR---- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t-~~~~---- 240 (362)
...|.||+++|.|+|++++. +++.|||++|||++.+. . .+|.+|+++++|+++||.||+ |++.. .+..
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~ 485 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFLMN-G-QELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPG 485 (557)
T ss_pred CCCccccchHHHHHHHHHhC----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence 45799999999999999885 68899999999998863 3 459999999999988887777 77532 1111
Q ss_pred -----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ ++||+++.+|+ +++++.++++++++. +||+|||+.+.+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~li~v~~~~ 539 (557)
T PRK08199 486 RVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALAS---GKPALIEIRIDP 539 (557)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCH
Confidence 112368887 45999999997 677888888887653 899999999865
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=145.17 Aligned_cols=115 Identities=23% Similarity=0.275 Sum_probs=91.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc-cc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-WR---- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~-~~---- 240 (362)
++.|.||+++|.|+|+++|. +++.||++.|||++.+. ..| |.+|++++||+++||.||+ |++.... ..
T Consensus 418 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~ 491 (572)
T PRK06456 418 SGMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT-GTN-LATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGK 491 (572)
T ss_pred CCcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc-hHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 45699999999999999986 67899999999998875 455 9999999999876666665 8864321 10
Q ss_pred -----c-cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -----A-AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -----~-~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. ...+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 546 (572)
T PRK06456 492 RIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIKE---DIPAVIRVPVDK 546 (572)
T ss_pred CcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCc
Confidence 0 12368887 45999999995 788999988888754 899999999976
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=143.48 Aligned_cols=115 Identities=25% Similarity=0.344 Sum_probs=90.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc------c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------~ 239 (362)
++.|+||+++|.|+|+++|. +++.||++.|||++++. ..| |.+|+++++|+++||.||+ |++.... .
T Consensus 411 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~ 484 (561)
T PRK06048 411 GGLGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN-SQE-LATAVQNDIPVIVAILNNGYLGMVRQWQELFYDK 484 (561)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc-HHH-HHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCC
Confidence 34589999999999999985 67899999999999875 455 9999999999876666654 7753211 0
Q ss_pred c---cc--CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R---AA--KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~---~~--~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. .. ..+||.+ +++|+++.+|+ ++.++.+++++|++. ++|+|||+.+.+
T Consensus 485 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~~---~~p~liev~~~~ 539 (561)
T PRK06048 485 RYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVAS---DRPVVIDFIVEC 539 (561)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 1 11 3468887 45999999996 788999999888754 999999999865
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=129.52 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=87.5
Q ss_pred CCccccchhHHHHHHHHHH-hhCCCCCeEEEEeCCcccc-cchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc----
Q 018037 168 GHGIVGAQIPLGCGLAFAQ-KYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~-k~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~---- 240 (362)
+.|.||+++|.|+|+++|. +...+++.|||+.|||++. +| +.| +.++..+++|+++||.||+ ||+...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 4599999999999999881 1113688999999999964 44 555 5667789999987777776 775431211
Q ss_pred ------------ccCCchHhhh--cCCcceEE---EeCCCHHHHHHHHHHHHH-HhccCCCEEEEEEEe
Q 018037 241 ------------AAKSPSYYKR--GDYVPGLK---VDGMDALAVKQACKFAKE-HALKNGPMILEMDTY 291 (362)
Q Consensus 241 ------------~~~~~~~~~~--g~gi~g~~---VdG~D~~av~~a~~~A~~-~ar~~gP~lIe~~ty 291 (362)
....+||.+. ++|+++++ |+ ++.++.+++++|++ . +||+|||+.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~~~---~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAISRT---DGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHhcC---CCCEEEEEeCC
Confidence 1124688874 59999985 64 68999999999986 4 99999999863
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=144.48 Aligned_cols=115 Identities=19% Similarity=0.267 Sum_probs=90.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|+++++|+++||.|| .|++......
T Consensus 411 ~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~ 484 (552)
T PRK08617 411 NGMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGR 484 (552)
T ss_pred CccccccccccHHHhhHhhc----CCCcEEEEEechHHhhh-HHH-HHHHHHhCCCeEEEEEECCccchHHHHHHhhcCC
Confidence 34689999999999999986 68899999999999874 455 899999999987665555 5776421110
Q ss_pred ----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. +||+++.+|. +++++.+++++|++. ++|+|||+.+.+
T Consensus 485 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~liev~~~~ 537 (552)
T PRK08617 485 SSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALAT---DGPVVIDIPVDY 537 (552)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCcEEEEEEecc
Confidence 1124688874 5999999995 788998888888753 899999999865
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=145.12 Aligned_cols=116 Identities=18% Similarity=0.094 Sum_probs=89.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc----cc
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW----RA 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~----~~ 241 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++..... ..
T Consensus 425 ~~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~ 498 (578)
T PLN02573 425 MQYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT-AQD-VSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNV 498 (578)
T ss_pred cchhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceeEEEeecccCccc
Confidence 44699999999999999986 68899999999999874 455 9999999999876666554 88643211 11
Q ss_pred cCCchHhhh--cCC-----cceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 242 AKSPSYYKR--GDY-----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 242 ~~~~~~~~~--g~g-----i~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
...+||.+. +|| +++.+|+ +++++.+++++|++. ..++|+|||+.+.
T Consensus 499 ~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~-~~~~p~lieV~v~ 552 (578)
T PLN02573 499 IKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE-KKDCLCFIEVIVH 552 (578)
T ss_pred cCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh-CCCCcEEEEEEcC
Confidence 134688774 453 8999996 788999999998752 1289999999873
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=142.51 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=89.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE-cCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~-NN~~gi~t~~~------ 239 (362)
.+.|.||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++||. |++|++.....
T Consensus 403 ~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~ 476 (547)
T PRK08322 403 NALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN-SQE-LETAVRLGLPLVVLILNDNAYGMIRWKQENMGFE 476 (547)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc-HHH-HHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCC
Confidence 34689999999999999985 67899999999998874 455 8899999999865555 55588642110
Q ss_pred c---ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R---AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~---~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. ....+||.+ ++||+++.+|+ +++++.++++++++. ++|+|||+.+.+
T Consensus 477 ~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 529 (547)
T PRK08322 477 DFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALAQ---PGVHVIDCPVDY 529 (547)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 0 112468887 45999999995 788999999888753 899999999854
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=143.73 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=90.0
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc-------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------- 239 (362)
+.|.||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++||.|| +|++.....
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~ 479 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-MQD-FVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELE 479 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 3699999999999999986 67899999999999884 455 899999999986555555 588632110
Q ss_pred --cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 240 --~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.....+||.+. +||+++.+|+ +++++.++++++++. ++|+|||+.+.+.
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~vd~~ 532 (576)
T PRK08611 480 YAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALAQ---DKPVIIDVYVDPN 532 (576)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCCc
Confidence 11124688874 5999999995 788998888888754 9999999999763
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=144.74 Aligned_cols=115 Identities=25% Similarity=0.390 Sum_probs=90.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc-------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE------- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~------- 238 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| +|++....
T Consensus 423 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~ 496 (585)
T PLN02470 423 GGLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN-IQE-LATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKA 496 (585)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCC
Confidence 34599999999999999986 68899999999999885 455 999999999987665555 57753211
Q ss_pred --c-cccC--------CchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 --W-RAAK--------SPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 --~-~~~~--------~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. .... .+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 497 ~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~i~~ 558 (585)
T PLN02470 497 NRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLDT---PGPYLLDVIVPH 558 (585)
T ss_pred ceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 0 0001 168887 45999999995 788999999888763 899999999964
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=142.33 Aligned_cols=115 Identities=27% Similarity=0.428 Sum_probs=90.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. ++| |.+|+++++|+++||.||+ |++.....
T Consensus 421 ~~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~ 494 (571)
T PRK07710 421 GGLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQ 494 (571)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCC
Confidence 45589999999999999985 68899999999999873 666 9999999999876655554 77632210
Q ss_pred -----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. +||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 495 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~vd~ 549 (571)
T PRK07710 495 RYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIEL---QEPVVIDCRVLQ 549 (571)
T ss_pred cceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 01124688874 5999999996 677888888777753 899999999975
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=141.41 Aligned_cols=116 Identities=23% Similarity=0.411 Sum_probs=91.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc-------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------- 238 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. + ++|.+|+++++|+++||.||+ |++....
T Consensus 418 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~ 491 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSG 491 (574)
T ss_pred CCcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCC
Confidence 45699999999999999985 67889999999999885 4 459999999999987777776 6643211
Q ss_pred --ccc--cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 --WRA--AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 --~~~--~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
... ...+||.+ ++||+++++|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~liev~i~~ 547 (574)
T PRK06882 492 RHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI--KDKLVFVDVNVDE 547 (574)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEecC
Confidence 000 12468887 45999999996 688999999888863 2789999999975
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-13 Score=128.08 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=88.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc-ccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccccc--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA-- 242 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG-a~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~-- 242 (362)
...+.+|.++|+|+|+++|. ++..||++.||| ++.+| +.| |.+|+++|+|+++||.||+ ||++..+...+
T Consensus 56 ~~~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig-~~e-L~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIG-LGH-LPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHcc-HHH-HHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 44688999999999999995 788999999999 58877 344 8899999999987777776 78764222111
Q ss_pred --------C--C----chHhh--hcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 243 --------K--S----PSYYK--RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 243 --------~--~----~~~~~--~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
. . .|+.+ +++|++.+. ....++.++.+++++|+++ +||.|||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~---~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKH---KGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 1 26665 458887654 3557999999999999875 9999999983
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=140.56 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=90.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++||.|| +|++.....
T Consensus 398 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~-~~e-L~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~ 471 (548)
T PRK08978 398 SGLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-VQE-LGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDE 471 (548)
T ss_pred CchhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 34599999999999999986 67899999999998874 455 999999999987655555 587532110
Q ss_pred c--cc---CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R--AA---KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~--~~---~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+ .. ..+||.+. +||+++.+|+ +++++.+++++|++. ++|.|||+.+.+
T Consensus 472 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~id~ 526 (548)
T PRK08978 472 RYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLNS---EGPYLLHVSIDE 526 (548)
T ss_pred cceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 1 11 23688874 5999999995 788999999888753 899999999976
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-13 Score=131.16 Aligned_cols=132 Identities=20% Similarity=0.168 Sum_probs=96.0
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCC-CeEEEEEcCC-cccccccccccCCc
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~L-PvIfVv~NN~-~gi~t~~~~~~~~~ 245 (362)
..|+||+++|+|+|+++|. +++.|||+.|||++.+. . .+|.+++.+++ |+++||.||+ |+....+.......
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~-~-~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH-M-GGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH-H-HHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3599999999999999986 67899999999998652 2 34888999996 7877777776 66533222222356
Q ss_pred hHhh--hcCCc-ceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCChhhHHh
Q 018037 246 SYYK--RGDYV-PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (362)
Q Consensus 246 ~~~~--~g~gi-~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~ 313 (362)
||.+ +++|+ .+++| ++.+++.++++++++. +||+|||+.+....+-....| -+++.|.++
T Consensus 293 d~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~~~---~gp~lIeV~v~~g~~~~l~rp---~~~p~e~~~ 355 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEV--STLEELETALTAASSA---NGPRLIEVKVRPGSRADLGRP---TTSPPENKR 355 (361)
T ss_pred CHHHHHHHCCCceEEEe--CCHHHHHHHHHHHHhC---CCcEEEEEEecCCCccCCCCC---CCCHHHHHH
Confidence 8877 45886 46666 5899999999988653 899999999876554443333 356666553
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=138.49 Aligned_cols=114 Identities=21% Similarity=0.190 Sum_probs=89.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccc--c---c-
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA--E---W- 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~--~---~- 239 (362)
++.|+||+++|.|+|+++|. ++.||++.|||++++. ..| |.+|+++++|+++||.||+ |..... . .
T Consensus 414 ~~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~ 486 (554)
T TIGR03254 414 GTWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADP 486 (554)
T ss_pred CCCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCC
Confidence 34599999999999999972 6789999999999874 556 9999999999988888776 421100 0 0
Q ss_pred --cc-cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 --RA-AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 --~~-~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 487 ~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~id~ 539 (554)
T TIGR03254 487 APTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALAS---GKPTLINAVIDP 539 (554)
T ss_pred CccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEECC
Confidence 01 13468887 45999999995 789999999988753 899999999854
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=125.97 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc---
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA--- 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~--- 241 (362)
+..+++|.++|+|+|+++|. +++.||++.|||+ ++.| ..| |.+|+++++|+++||.||+ ||+...+...
T Consensus 66 ~~~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg-~~e-L~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~ 139 (286)
T PRK11867 66 GFHTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIG-GNH-FIHALRRNIDITYILFNNQIYGLTKGQYSPTSP 139 (286)
T ss_pred chhhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCC-HHH-HHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCC
Confidence 44589999999999999985 7899999999996 7776 344 8899999999877666665 8875432110
Q ss_pred ----c---------CCchHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 ----A---------KSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 ----~---------~~~~~~~~--g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
+ ...++.+. ++|...+. +.-.++.++.+++++|+++ +||+|||+.+
T Consensus 140 ~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~---~Gp~lIev~~ 201 (286)
T PRK11867 140 VGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH---KGFSFVEILQ 201 (286)
T ss_pred CCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 01355554 46766552 2345799999999999865 9999999974
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-13 Score=127.15 Aligned_cols=116 Identities=20% Similarity=0.126 Sum_probs=87.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
+..+.+|.++|+|+|+++|. +++.||++.|||++..--+.| |.+|+++++|+++||.||+ ||+...+..
T Consensus 57 ~~~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG~~e-L~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~ 131 (280)
T PRK11869 57 GFHTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEGGNH-LIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLK 131 (280)
T ss_pred CCCcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCcHHH-HHHHHHhCcCcEEEEEECHHHhhhcceecCCCCC
Confidence 34466999999999998885 788999999999965311444 9999999999987777776 786432211
Q ss_pred -----------ccCCchHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 241 -----------AAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 241 -----------~~~~~~~~~~--g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
.....||.+. ++|++++.. +-.++.++.+++++|+++ +||+|||+.+
T Consensus 132 g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~---~Gp~lIeV~~ 192 (280)
T PRK11869 132 GFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH---KGLAIVDIFQ 192 (280)
T ss_pred CcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 0012467664 589988763 245899999999999976 9999999984
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-13 Score=139.41 Aligned_cols=114 Identities=25% Similarity=0.332 Sum_probs=89.5
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------c
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------~ 240 (362)
+.|+||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++||.||+ |++..... .
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~ 490 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQE-LATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKR 490 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCC
Confidence 4589999999999999985 67889999999998875 455 9999999999876666665 87642111 0
Q ss_pred ---c-c-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ---A-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ---~-~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . ..+||.+. ++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 544 (586)
T PRK06276 491 QSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIKS---GEPYLLDIIIDP 544 (586)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecc
Confidence 1 1 23578874 5999999995 789999999888753 899999999854
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=137.48 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=89.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccc----c--c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA----E--W 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~----~--~ 239 (362)
++.|+||+++|.|+|+++|. ++.||+++|||++++. +.| |.+|+++++|+++||.||+ |-.... . .
T Consensus 421 ~~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~ 493 (569)
T PRK09259 421 GTWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGD 493 (569)
T ss_pred CCCccccccHHHHHHHHhcC-----CCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCC
Confidence 34699999999999999982 6789999999999874 566 9999999999988888887 311110 0 0
Q ss_pred ---c-ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---R-AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~-~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. ....+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 494 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~id~ 547 (569)
T PRK09259 494 PSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIAS---GKPTLINVVIDP 547 (569)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEECC
Confidence 0 0135688874 5999999995 788999999988764 999999999854
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=125.45 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=83.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccccc--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA-- 242 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~-- 242 (362)
+..+.+|.++|+|+|+++|. +++.||++.|||++ .+| ..| |.+|+++++|+++||.||+ ||+...+...+
T Consensus 50 ~~~t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg-~~e-L~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~ 123 (287)
T TIGR02177 50 GFHGLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIG-GNH-FVAAGRRNVDITVIVHDNQVYGLTKGQASPTLL 123 (287)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhcc-HHH-HHHHHHhCcCeEEEEEECHHHHhhhcccccCcc
Confidence 34467899999999999985 78999999999995 465 333 8899999999987776665 78754322100
Q ss_pred ----------------CCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 243 ----------------KSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 243 ----------------~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
..+++.+.+ +++.+.. ...++.++.+++++|+++ +||+|||+.+
T Consensus 124 ~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~~---~GpslIeV~~ 185 (287)
T TIGR02177 124 KGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAINH---KGYALVDILQ 185 (287)
T ss_pred CCcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 123455544 5544443 236899999999999875 9999999974
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-13 Score=141.54 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=90.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++.+. ..| |.+|++++||+++||.|| +|++.....
T Consensus 444 ~~~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~ 517 (612)
T PRK07789 444 GGLGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT-NQE-LATCAIEGIPIKVALINNGNLGMVRQWQTLFYEE 517 (612)
T ss_pred CCcccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc-HHH-HHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 45589999999999999986 67899999999998874 444 999999999987665555 588532110
Q ss_pred c----c--c---CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R----A--A---KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~----~--~---~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . . ..+||.+ +++|+++.+|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 518 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 577 (612)
T PRK07789 518 RYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI--NDRPVVIDFVVGK 577 (612)
T ss_pred CcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEECC
Confidence 0 0 0 1268887 45999999995 788999999999873 2799999999965
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-13 Score=140.26 Aligned_cols=114 Identities=25% Similarity=0.356 Sum_probs=87.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|+++++|+++||.|| +|++.....
T Consensus 415 ~~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~ 488 (566)
T PRK07282 415 GGLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT-NQE-LAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEG 488 (566)
T ss_pred CccccccchhhHhheeheec----CCCcEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCC
Confidence 34699999999999999986 68899999999999874 455 999999999987665555 588633111
Q ss_pred ----ccc-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ----RAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ----~~~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
... ..+||.+. +||+.+.+|+ ++.++.++++ +++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~---~~~p~lIeV~v~~ 542 (566)
T PRK07282 489 RTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT---EDVPMLIEVDISR 542 (566)
T ss_pred CcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc---CCCCEEEEEEeCC
Confidence 111 24688874 5999999996 7888888775 332 3899999999865
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.4e-13 Score=137.15 Aligned_cols=114 Identities=19% Similarity=0.158 Sum_probs=87.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~----- 240 (362)
+..|+||+++|.|+|+++|. + +.+|+++|||++++. .+| |.+|+++++|+++||.|| +|++......
T Consensus 400 ~~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~ 472 (535)
T TIGR03394 400 GYYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQMT-GWE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFN 472 (535)
T ss_pred CccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHhH-HHH-HHHHHHcCCCcEEEEEECCccceeehhccCCCcc
Confidence 35699999999999999984 3 445889999999874 555 999999999987665555 5886432211
Q ss_pred ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 241 AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 241 ~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
....+||.+ ++||+++.+|+ ++.++.+++++|++. .++|+|||+.+.
T Consensus 473 ~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~ 521 (535)
T TIGR03394 473 DLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT--RGRFQLIEAMLP 521 (535)
T ss_pred cCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc--CCCeEEEEEECC
Confidence 123468876 56999999996 788999999888752 255899999873
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.6e-13 Score=138.16 Aligned_cols=112 Identities=21% Similarity=0.151 Sum_probs=85.6
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccc----cc---
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA----EW--- 239 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~----~~--- 239 (362)
+.+.+|+++|.|+|+++| +++.|||+.|||++++. ..| |.+|+++++|+++||.||+ |++-.. +.
T Consensus 423 g~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~~e-L~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~ 495 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-LNG-LLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPV 495 (568)
T ss_pred CccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-cHH-HHhhcccCCCeEEEEEECCCCccccCCCCCCCcch
Confidence 347799999999999987 36789999999998874 445 8899999999876666665 774211 10
Q ss_pred --c---ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 240 --R---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 240 --~---~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
+ ....+||.+. +||+++.+|+ +++++.+++++|++. ++|+|||+.+.
T Consensus 496 ~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~p~lIev~id 549 (568)
T PRK07449 496 FERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALPT---PGLTVIEVKTN 549 (568)
T ss_pred hhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhcC---CCCEEEEEeCC
Confidence 0 1124688875 4999999995 788999999888753 89999999873
|
|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.3e-12 Score=133.12 Aligned_cols=118 Identities=19% Similarity=0.102 Sum_probs=88.5
Q ss_pred cccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccccc--
Q 018037 165 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRA-- 241 (362)
Q Consensus 165 ~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~~-- 241 (362)
+....+.||+++|.|+|+++|. +++.||+++|||++.+..+.| |.+|+.+++|+++||.|| .||+...+...
T Consensus 398 ~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~ 472 (595)
T TIGR03336 398 TVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPGT 472 (595)
T ss_pred ccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCCC
Confidence 3344689999999999999885 678999999999987532455 888999999988776666 57875432110
Q ss_pred --------cCCchHhh--hcCCcceEEEeC-CCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 --------AKSPSYYK--RGDYVPGLKVDG-MDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 --------~~~~~~~~--~g~gi~g~~VdG-~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
...+||.+ +++|+++.+|.. .+..++.++++++++. +||++|++..
T Consensus 473 ~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~---~gp~li~v~~ 529 (595)
T TIGR03336 473 GVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAA---EGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhc---CCCEEEEEcc
Confidence 12357776 569999998854 4556778888888764 8999999964
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=111.56 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=96.9
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA 241 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~ 241 (362)
++...++.+|.+.++|.|++.|.+..+++..||++.|||++ ..| + ++|.-|...+.++++||.||. |+++.-+...
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG-F-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc-H-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 44566789999999999999998876677899999999995 455 3 678899999999999999887 6664332211
Q ss_pred ---------------------cCCchHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCC
Q 018037 242 ---------------------AKSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHG 295 (362)
Q Consensus 242 ---------------------~~~~~~~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--yR~~G 295 (362)
....|+.. .++|++.+ +++-.++.++.+++++|+++ +||.||++.. ...++
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~---~Gps~I~v~sPC~~~~~ 217 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV---EGPAYIQVLQPCPTGWG 217 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCCC
Confidence 01224444 34787776 56767999999999999876 9999999984 33444
Q ss_pred CC
Q 018037 296 HS 297 (362)
Q Consensus 296 Hs 297 (362)
+.
T Consensus 218 ~~ 219 (299)
T PRK11865 218 FP 219 (299)
T ss_pred CC
Confidence 43
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-11 Score=119.16 Aligned_cols=158 Identities=27% Similarity=0.327 Sum_probs=123.0
Q ss_pred HHHHHHHHhCCCCCCCCCCCCc-------cCCccCCCCc-ccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccc
Q 018037 134 LLEVFSELMGRKDGCSHGKGGS-------MHFYKKDSGF-YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205 (362)
Q Consensus 134 ~~~~lael~g~~~g~~~Grggs-------~H~~~~~~~~-~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~ 205 (362)
+++-|.+.|||...+..-.|-| .|.+.|.+.+ .+..|++|+.+|+|+|+..|. +++.+|++.||-.++
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~ad----p~r~vvalsgdydfq 450 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDYDFQ 450 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeecC----CCCceEEeecCchHH
Confidence 5677888999988655444432 7888887665 466799999999999998764 888999999999988
Q ss_pred cchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchH---------------------hh--hcCCcceEEEeC
Q 018037 206 QGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSY---------------------YK--RGDYVPGLKVDG 261 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~---------------------~~--~g~gi~g~~VdG 261 (362)
- ..|.|...+++++|-|+|+.||.| |......+.+ ..|| .+ .|.|++.++|
T Consensus 451 f--mieelavgaq~k~pyihv~vnnaylglirqaqr~f-~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv-- 525 (592)
T COG3960 451 F--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAF-DMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV-- 525 (592)
T ss_pred H--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcC-CccceeeehhhccCCccccccCccceeehhccCceeEEe--
Confidence 5 678899999999999999999998 6543333222 1111 11 2356777888
Q ss_pred CCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCC
Q 018037 262 MDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSD 300 (362)
Q Consensus 262 ~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D 300 (362)
.+|.++..++.+|...+.+ .-|+++|+...|....|++-
T Consensus 526 ~~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismgt 565 (592)
T COG3960 526 FKPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMGT 565 (592)
T ss_pred cChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhcccccc
Confidence 5899999999999988878 89999999999999888753
|
|
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=115.99 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=103.1
Q ss_pred cchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcc--cCCccccch
Q 018037 98 DGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY--GGHGIVGAQ 175 (362)
Q Consensus 98 ~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~--~~~g~lG~~ 175 (362)
.-||-+.--+...|+++|.|+.- .|. .+||-. -+...++..|. +-+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tGt-------------S~FG~~----------~~~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TGT-------------SFFGAL----------DIRLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---ccc-------------ccccce----------eeecCCCCeEEcccchhhcccc
Confidence 56777776788899999999872 111 123211 12222222222 457999999
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccC------CchHh
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK------SPSYY 248 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~------~~~~~ 248 (362)
+|++.|+++|. +++++|.|+||||++. -++| +.+-.+|+|| +|||++|++|.|......... .=||.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~Ql-TvQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQL-TVQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhhh-hHHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999998 6799999999999987 3677 7777899997 789999999987544433110 11333
Q ss_pred h--hcCCcce----EEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 249 K--RGDYVPG----LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 249 ~--~g~gi~g----~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+ .++|... .++ ...+.+..++..+.+. .+++.+|||.+.+
T Consensus 491 ~l~~afg~~~~~~~~~~--~~~~~l~~~~~~~~~~--~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRA--TTGEELALALDVAFAN--NDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEee--cChHHHHHHHHHHhcC--CCceEEEEEecCc
Confidence 3 2344332 223 2334554555544431 2689999998865
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=111.61 Aligned_cols=226 Identities=20% Similarity=0.200 Sum_probs=142.7
Q ss_pred ceeeeCCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HhccccccccccC-----cchHHHHH
Q 018037 36 PLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSL-----YKAKLVRGFCHLY-----DGQEAVAI 105 (362)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l-----~~~g~i~gf~h~~-----~GqEa~~v 105 (362)
-+-||++ |-..-+.-.|-...+=+-..-+......+..|..|++.+.+ +|++--..|.... .-|+++.+
T Consensus 402 IiHfdis-pknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vIk~ 480 (675)
T KOG4166|consen 402 IIHFDIS-PKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVIKV 480 (675)
T ss_pred eEEEecC-HHHhCcccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHHHH
Confidence 4677777 65555554454444444444444445556777777766532 2332112222112 34666654
Q ss_pred HHHhcCCCCC-EEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCC-cccCCccccchhHHHHHHH
Q 018037 106 GMEAGITKKD-SIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSG-FYGGHGIVGAQIPLGCGLA 183 (362)
Q Consensus 106 g~~~~l~~~D-~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~-~~~~~g~lG~~~p~A~G~A 183 (362)
--...=+.+| +++++.-+...+++. +++. +..|... ..|+.|.||+++|+|+|+.
T Consensus 481 Ldk~t~d~~~kviitTGVGqHQMWAA---------qfy~--------------w~kP~~~~tSGGLGtMGfGLPAAIGAs 537 (675)
T KOG4166|consen 481 LDKLTDDTGRKVIITTGVGQHQMWAA---------QFYN--------------WKKPRQWLTSGGLGTMGFGLPAAIGAS 537 (675)
T ss_pred HHHhccCcCceEEEeccccHHHHHHH---------HHhc--------------ccCccceeecCCccccccCcchhhccc
Confidence 2222212233 556766666565552 2221 1112111 1367899999999999998
Q ss_pred HHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc----------cCCchHhhhc-
Q 018037 184 FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA----------AKSPSYYKRG- 251 (362)
Q Consensus 184 ~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~----------~~~~~~~~~g- 251 (362)
.|. ++.+||-+-||+++++- +.| |.++.+.++||-+++.||. .||-+..+.. ..+|+|-+.+
T Consensus 538 VA~----P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~ 611 (675)
T KOG4166|consen 538 VAN----PDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAA 611 (675)
T ss_pred ccC----cccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHH
Confidence 875 89999999999999874 566 9999999999976666666 5887765421 1357887754
Q ss_pred -CCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 252 -DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 252 -~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
.|+++++|. .-+++.+.+++.+.- +||+|+|+.+..-...
T Consensus 612 AmGikalRV~--K~edL~~k~keflsT---kGPvLleV~v~~kehV 652 (675)
T KOG4166|consen 612 AMGIKALRVT--KKEDLREKIKEFLST---KGPVLLEVIVPHKEHV 652 (675)
T ss_pred hcCCchheee--hHHHHHHHHHHHhCC---CCCeEEEEEccCccce
Confidence 899999996 566888888877653 9999999998664443
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=134.16 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=87.1
Q ss_pred ccCCccccc--hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC--CCCeEEEEEcCC-ccccccc--
Q 018037 166 YGGHGIVGA--QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNH-YGMGTAE-- 238 (362)
Q Consensus 166 ~~~~g~lG~--~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~--~LPvIfVv~NN~-~gi~t~~-- 238 (362)
.++.|.+|. ++|.|+|+++|. ++.|||++|||++.+. ..| |.+|+++ ++|+++||.||+ ||+-...
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~~E-L~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~ 827 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-TNG-LSILSQRIARKPMTILVINNHGGAIFSLLPI 827 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-hhH-HHHhhcccCCCCEEEEEEeCCCcHhhhcCcc
Confidence 356789999 599999999884 6789999999998873 455 9999884 999876666665 6653210
Q ss_pred ----c-----c---ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 ----W-----R---AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 ----~-----~---~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . ....+||.+ ++||+++.+|+ +++++.+++++|.+. ++|+|||+.|.|
T Consensus 828 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~~---~~p~lIEV~t~~ 890 (1655)
T PLN02980 828 AKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQVE---QMDCVVEVESSI 890 (1655)
T ss_pred CCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhcc---CCCEEEEEecCh
Confidence 0 0 012467877 45999999996 788998888877753 899999999854
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-10 Score=111.02 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=88.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE-cCC-ccccccccccc--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNH-YGMGTAEWRAA-- 242 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~-NN~-~gi~t~~~~~~-- 242 (362)
|.+|+||-+++.|+++|++. +++.|+|+-||++++-. .+| +.++++++||||.||. ||+ ||..+..+.+.
T Consensus 427 GtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred ccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCcccHHHHhh
Confidence 66899999999888888876 99999999999998763 556 8899999999876666 445 56544332211
Q ss_pred -------------CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 243 -------------KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 243 -------------~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.+.+|.. +++|..|+.|+ .++++..+++++.+. .++|++|.+..-+
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~--~~~psvINVlI~p 561 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD--TDKPSVINVLIGP 561 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc--CCCCeEEEEEecc
Confidence 2334544 56999999997 789999999888753 2699999998754
|
|
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-07 Score=97.18 Aligned_cols=166 Identities=21% Similarity=0.212 Sum_probs=108.9
Q ss_pred cCCccccchhHHHHHHHHHHhhC-------CCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCccccccc
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYS-------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAE 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~-------~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~ 238 (362)
..+.+||-+.-.|+=-|.-.||- .+++.|+||.|||.+.+++..+++.+|++++|. +||||+.|.-....|.
T Consensus 189 FpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpV 268 (887)
T COG2609 189 FPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPV 268 (887)
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcc
Confidence 45678888877787777777762 467899999999999999999999999999998 5799998876443332
Q ss_pred ccc---------------------------------------------cCCchHhh---h-c-------CC---------
Q 018037 239 WRA---------------------------------------------AKSPSYYK---R-G-------DY--------- 253 (362)
Q Consensus 239 ~~~---------------------------------------------~~~~~~~~---~-g-------~g--------- 253 (362)
... +..-+|.. + | ||
T Consensus 269 rgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLV 348 (887)
T COG2609 269 RGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALV 348 (887)
T ss_pred cCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHH
Confidence 100 00112211 0 0 11
Q ss_pred -------cceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHH
Q 018037 254 -------VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRK 326 (362)
Q Consensus 254 -------i~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~ 326 (362)
+..+.--|||+..|++|++.|.++ +++|++|-+.|.+.+|-..+-.+.. ..-..+.+ ..|-|..||+
T Consensus 349 a~~tD~diw~L~rGGHD~~ki~aA~~~A~~~--kg~PtvilA~TIKGyglg~~~eg~n--~aHq~kkm--~~~~l~~~Rd 422 (887)
T COG2609 349 ADMTDDDIWALNRGGHDPEKVYAAFKKAQEH--KGRPTVILAKTIKGYGLGEAAEGKN--IAHQVKKM--TPDQLKEFRD 422 (887)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHHhcC--CCCceEEEEeeeccccCchhhcccc--hhhhhhcC--CHHHHHHHHh
Confidence 111234699999999999999985 3589999999988887542211100 00011111 2344667777
Q ss_pred HHHHcCC-CCHHHHHH
Q 018037 327 LILAHDL-ATEKELKD 341 (362)
Q Consensus 327 ~L~~~g~-~t~~el~~ 341 (362)
++ |+ ++++|+++
T Consensus 423 r~---~ipvsd~e~e~ 435 (887)
T COG2609 423 RF---GIPVSDAELEE 435 (887)
T ss_pred hc---CCCCchhhhhc
Confidence 65 44 67777766
|
|
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=94.41 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=86.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~------ 239 (362)
.+.+.||+-+.-++|+.+| .+++-|++++|||++.+ .+..|.++..++..+++|+ +|-+||-..+.+
T Consensus 441 YgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~ 514 (617)
T COG3962 441 YGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGA 514 (617)
T ss_pred ecccccccccccccccccC----CCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcc
Confidence 3568999999999998744 58899999999999876 6666999999999986555 455688321111
Q ss_pred ------------cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ------------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ------------~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
......||++. +||....+|. +++++..|++.|++. .+++||+++|..
T Consensus 515 sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~~---~~ttvi~I~t~P 576 (617)
T COG3962 515 SFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKAS---DRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHhC---CCCEEEEEecCC
Confidence 11234578874 5999999995 888887777766653 899999998743
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-06 Score=82.86 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=84.7
Q ss_pred ccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccccc-
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA- 242 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~- 242 (362)
...++..|-+.++|.|+.+|. ++..||++.|||. +..|--+ |--+...+..+++||.||. ||.+.-+...+
T Consensus 66 ~~~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~~--l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tT 139 (294)
T COG1013 66 PWVHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGNH--LIHALRRNHDITYIVVDNEVYGNTGGQASPTT 139 (294)
T ss_pred CceeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhHH--HHHHHHcCCCeEEEEECCeecccCCCccCCCC
Confidence 455788999999999999997 5668999999995 6777433 7778899999988888887 77653332111
Q ss_pred ---------C------Cc-hHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 243 ---------K------SP-SYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 243 ---------~------~~-~~~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
+ .+ |... .++|.+.+ ++---++.++.+.+++|+++ +||.||++.+
T Consensus 140 p~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~---~Gps~I~v~s 203 (294)
T COG1013 140 PKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH---KGPSFIDVLS 203 (294)
T ss_pred CCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc---cCCeEEEEec
Confidence 0 11 2222 24676554 55445799999999999987 8999999975
|
|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=93.08 Aligned_cols=115 Identities=20% Similarity=0.181 Sum_probs=79.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCe-EEEEEcCCccccccccccc---
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGTAEWRAA--- 242 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPv-IfVv~NN~~gi~t~~~~~~--- 242 (362)
..+|++|+.+|.++|+++|. +++++|.|+|||+++.- ++| +.+..+|+||. ||+++|++|-|........
T Consensus 412 ~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~ 485 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYND 485 (561)
T ss_pred EEEeeccccchhhhhhhhcc----CCceEEEEecCccceee-HHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCccc
Confidence 44689999999999999987 56899999999999874 677 77778999985 7889999997754433311
Q ss_pred -CCchHhh--hcCC-----cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 243 -KSPSYYK--RGDY-----VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 243 -~~~~~~~--~g~g-----i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
..-+|.+ .++| ....+| ..-.+..++++.+... + ++|.+||+...
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v--~~~~e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKV--RTEEELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeee--ccchHHHHHHhhhhhc--ccCceEEEEEecC
Confidence 1124444 2333 233344 2234555666666532 4 78999999763
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-06 Score=83.64 Aligned_cols=191 Identities=21% Similarity=0.254 Sum_probs=101.8
Q ss_pred ccccccccCcchHHHHHHHHhcCCC--CCEEEcCchhHHH--HHHc----C----------CC---HHHHHHHHhCCCCC
Q 018037 89 LVRGFCHLYDGQEAVAIGMEAGITK--KDSIITAYRDHCT--FLGR----G----------GT---LLEVFSELMGRKDG 147 (362)
Q Consensus 89 ~i~gf~h~~~GqEa~~vg~~~~l~~--~D~v~~~yR~h~~--~l~r----G----------~~---~~~~lael~g~~~g 147 (362)
+..|++-.+.|+-.+-+-+...+++ .|.++-.--|||. +++. | .+ +..++.++ +-
T Consensus 45 rllGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S~--- 120 (379)
T PF09364_consen 45 RLLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-SF--- 120 (379)
T ss_dssp S--S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-TS---
T ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-CC---
Confidence 3567777778888777666666653 4566655567765 2221 1 11 22333333 11
Q ss_pred CCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCC-----CC
Q 018037 148 CSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-----LP 222 (362)
Q Consensus 148 ~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~-----LP 222 (362)
.-|-+.|....-.+-...-|-+|+.++.|.|++| .++|.+++|++|||++.+|- +|+-|. -|
T Consensus 121 ---PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGp------lA~sWh~~kflnP 187 (379)
T PF09364_consen 121 ---PGGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGP------LAASWHSNKFLNP 187 (379)
T ss_dssp ---TTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-T
T ss_pred ---CCCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCc------ccccccccceeCc
Confidence 1122456653333444456889999999999886 45999999999999999885 333442 12
Q ss_pred -----eEEEEEcCCcccccccccccC-CchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHH-----------hccC--
Q 018037 223 -----AILVCENNHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEH-----------ALKN-- 281 (362)
Q Consensus 223 -----vIfVv~NN~~gi~t~~~~~~~-~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~-----------ar~~-- 281 (362)
|+=|+.=|+|-|+.++--... ..++.+ +|+|..-+.|+|.|+.++...+..+++. +|++
T Consensus 188 ~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~ 267 (379)
T PF09364_consen 188 ATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNP 267 (379)
T ss_dssp TTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--S
T ss_pred ccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 555666689988776543222 233444 5799888999999999987766555433 2331
Q ss_pred --CC--EEEEEEEecCCCC
Q 018037 282 --GP--MILEMDTYRYHGH 296 (362)
Q Consensus 282 --gP--~lIe~~tyR~~GH 296 (362)
.| -+|.+.|.+.++-
T Consensus 268 ~~~prwPmivlRtPKGWtg 286 (379)
T PF09364_consen 268 AYRPRWPMIVLRTPKGWTG 286 (379)
T ss_dssp S----EEEEEEE--TTTTS
T ss_pred CCCCCCcEEEEECCcccCC
Confidence 23 2666788776643
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0014 Score=65.25 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=62.7
Q ss_pred CeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc-------c---------CCchHhh--hcC
Q 018037 193 TVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA-------A---------KSPSYYK--RGD 252 (362)
Q Consensus 193 ~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~-------~---------~~~~~~~--~g~ 252 (362)
.-||++.|||. +..|.-+ |.-+...+.++++||.||. |+++.-+... + ...|... .++
T Consensus 152 ~~v~v~gGDG~~ydIG~~~--l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGG--LDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccchhh--HHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 47999999997 5666322 6567778888877777776 7765322110 0 0112222 247
Q ss_pred CcceE-EEe-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 253 gi~g~-~Vd-G~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
|.+.+ ++. |-++.++.+++++|.++ +||.||++.+.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~---~Gps~I~v~sP 267 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY---DGPSLIIAYSP 267 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC---CCCEEEEEEcc
Confidence 76654 443 35899999999999987 99999999863
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=74.25 Aligned_cols=112 Identities=26% Similarity=0.265 Sum_probs=80.9
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccc-cchHHHHHHHHHhCCCCeEEEEEcCCc-cccccccccc---
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--- 242 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~--- 242 (362)
.+-.+|.++++|-|++++. .+.+|+++|||++. .|. .+|..|...+.+++++|.+|.+ +|+..|....
T Consensus 426 ~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred hhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 3455777788888887764 37899999999954 554 3488899999999988888887 6876554321
Q ss_pred -----CCc--hH--hhhcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018037 243 -----KSP--SY--YKRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (362)
Q Consensus 243 -----~~~--~~--~~~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (362)
..+ +. ..|+.|+..++ ||=.|+.++.+++++|+++ .||.+|.++
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~---~gpsViiak 552 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV---PGPSVIIAK 552 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC---CCceEEEEc
Confidence 011 11 12567776664 4557888999999998876 899998765
|
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00021 Score=73.68 Aligned_cols=112 Identities=22% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCe-EEEEEcCCccccc--cc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGT--AE------ 238 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPv-IfVv~NN~~gi~t--~~------ 238 (362)
.+||=|. ++-|+|++.|. .+.+|+++||=++--- .-+|-+......|+ |+|++||+-||-. ++
T Consensus 421 A~GIDG~-vSTA~Gi~~a~-----~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~ 492 (566)
T COG1165 421 ASGIDGT-VSTALGIARAT-----QKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPV 492 (566)
T ss_pred ccccchh-HHHHhhhhhhc-----CCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcch
Confidence 3444444 77899999875 3569999999995321 11255666777775 6778888877631 11
Q ss_pred -cccc---CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 -WRAA---KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 -~~~~---~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
++.. ..-||... .|++...+++ .+.++.+++..+..+ .|-.+||++|.|
T Consensus 493 fe~~F~tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~~---~g~~viEvkt~r 547 (566)
T COG1165 493 FERLFGTPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWRR---SGTTVIEVKTDR 547 (566)
T ss_pred HHHhcCCCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhccC---CCcEEEEEecCh
Confidence 1111 12356553 4888887775 566887777766543 788999999977
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.038 Score=63.10 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred CeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-------cc---------CCchHhh--hcC
Q 018037 193 TVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------AA---------KSPSYYK--RGD 252 (362)
Q Consensus 193 ~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~-------~~---------~~~~~~~--~g~ 252 (362)
.-+|++.|||. +..|.- .|.-+...+.++.+||.||. |+.+.-+.. .+ ...|... .++
T Consensus 952 ~sv~~~~GDG~~~diG~~--~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYG--GLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCcc--chHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 36999999996 455522 26667788999877777776 776432211 00 1112222 347
Q ss_pred CcceE-EEe-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 253 gi~g~-~Vd-G~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
|.+.+ ++. |-++.++.+++++|.++ +||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~---~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY---DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC---CCCEEEEEECC
Confidence 76654 554 56899999999999887 99999999864
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=68.78 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=73.7
Q ss_pred ccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHH-HhCCCC----eEEEEEc
Q 018037 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLP----AILVCEN 229 (362)
Q Consensus 155 s~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A-~~~~LP----vIfVv~N 229 (362)
+.|....-.|....-|-+|+++..|.|+++ ..+|-++.|++|||....|....+ ..+ .-++.+ |+=|..=
T Consensus 138 ~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplats-Whs~kf~np~~dGavLPIL~l 212 (793)
T COG3957 138 GSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATS-WHSNKFLNPARDGAVLPILHL 212 (793)
T ss_pred ccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccc-cccccccCccccCceeeEEEe
Confidence 356654333555667899999999999987 458999999999997666642211 111 122333 5556777
Q ss_pred CCcccccccccccC-CchHhh--hcCCcceEEEeCCCHHHHHHH
Q 018037 230 NHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQA 270 (362)
Q Consensus 230 N~~gi~t~~~~~~~-~~~~~~--~g~gi~g~~VdG~D~~av~~a 270 (362)
|+|-|.-++.-.+. ..++.+ +|+|..-+.|+|.|+.++.+.
T Consensus 213 NGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~ 256 (793)
T COG3957 213 NGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQL 256 (793)
T ss_pred cceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhh
Confidence 89998876654332 233444 578888889999888885443
|
|
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.068 Score=45.79 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYV 254 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi 254 (362)
..+|.|.+++. ...++++..|.|..+ ..+.+..|...++|+|+|+...... ....... ..+.....-.+
T Consensus 48 ~~~A~G~a~~~----~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~~q---~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----GPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQTFQ---SMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhccCccc---ccCHHHHHHHh
Confidence 45566776653 222333344888764 4566778888899999999766542 2111111 11111111123
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
+...+--.++.+..+.+.+|+..+.. .||++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 33333234677788888888887777 89999976
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.023 Score=64.35 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCCc-cccccccccc--C
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--K 243 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~--~ 243 (362)
++..||+....++|.+... .++.+|+++|||.+ ..|.. +|.-|...+.+++++|.+|.. +|+..+.... .
T Consensus 479 ~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceecccc----CCCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 4567888888899987652 34679999999994 56643 377888889998877666665 8876654322 2
Q ss_pred CchHhh--hcCCcceEEEeCCCHHHHH-----------------HHHHHHHHHhcc-CCCEEEEEE
Q 018037 244 SPSYYK--RGDYVPGLKVDGMDALAVK-----------------QACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 244 ~~~~~~--~g~gi~g~~VdG~D~~av~-----------------~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
..++.. ++.|+.-+.|-..|+.... +++++++ |+ +|+++|...
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~~ 615 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIYD 615 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 344544 5688877766444555553 3444444 35 889888665
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.021 Score=64.72 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=75.1
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCCc-cccccccccc--C
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--K 243 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~--~ 243 (362)
+...||+....++|.+-+. .++.+|+++|||. +..|.. +|.-|...+.+++++|.+|.. +|+..+.... .
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~ 539 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSIS 539 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCC
Confidence 3457888888889988763 3457999999999 456654 588888999999887777776 7877665432 1
Q ss_pred CchHhh--hcCCcceEEEeCCCHHH----------------HHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 244 SPSYYK--RGDYVPGLKVDGMDALA----------------VKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 244 ~~~~~~--~g~gi~g~~VdG~D~~a----------------v~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
.+.+.. ++.|+.-+.|-..||.. ..+++++++ |+ +||++|...
T Consensus 540 v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~~ 601 (1159)
T PRK13030 540 VPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIYD 601 (1159)
T ss_pred HHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 122222 46888777664334444 233444444 24 889888664
|
|
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.091 Score=46.54 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|-|.+.+. ++-.++++..|=|.+| ..-++..|...++|+|+|.-+.... .+... .+ ..|... +.+--
T Consensus 53 mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~~~-~q--~~d~~~~~~~~tk 123 (164)
T cd07039 53 AASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGTDY-FQ--EVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCC-Cc--ccCHHHHHHHhhc
Confidence 455665543 3446677777888877 3456778889999999998765432 11110 01 112111 11222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
...+++ ++.++.+++.+|+..+.. .||+.|++
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 234564 788899999999988877 89999998
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.14 Score=44.53 Aligned_cols=100 Identities=22% Similarity=0.128 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhc-CC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY 253 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g-~g 253 (362)
..+|.|.+.+ +. +++++..|-|.++ ....|..|...+.|+|+|+-+.... .+.+ .. ...++.... ++
T Consensus 54 ~~~A~g~~r~----~~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~--~~-~~~~~~~~~~~~ 122 (160)
T cd07034 54 AEAAIGASAA----GA-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLP--KP-DQSDLMAARYGG 122 (160)
T ss_pred HHHHHHHHhh----CC-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCC--Cc-CcHHHHHHHhCC
Confidence 3445555543 22 2777888888876 4456777888899999998765432 2211 00 011111111 22
Q ss_pred --cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 254 --VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 254 --i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
.+..++ .+++++.+.+++|+..++. ++|++|.+
T Consensus 123 ~~~~~~~~--~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 123 HPWPVLAP--SSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CCEEEEeC--CCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 334445 5899999999999999988 89999865
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.13 Score=44.43 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~g 253 (362)
...+|.|.+++. ++-.++++..|=|.++ ..+++..|...++|+|+|.-+.... ............++.. .+-
T Consensus 46 A~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~ 118 (155)
T cd07035 46 AVGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFR-PIT 118 (155)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCcccccCHHHHHH-HHh
Confidence 345566666653 1223344444566555 5677888889999999888665432 2211100011111111 122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (362)
....++ .+++++.+.+.+|+..+.. +||+.|++
T Consensus 119 ~~~~~i--~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRV--TSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 224555 4788999999999998876 58999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.078 Score=60.14 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=72.7
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCCc-cccccccccc--C
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--K 243 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~--~ 243 (362)
+...||+....++|.+-.. .++.+|+++|||.+ ..|.. +|.-|...+.+++++|.+|.. +|+..+.... .
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~~--alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~ 566 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGLL--AIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLT 566 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCHH--HHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCC
Confidence 3466888888888887653 34579999999995 46643 378888889998877776665 8876665322 1
Q ss_pred CchHhh--hcCCcceEEEeCCCHHHHH--------------HHHHHHHHHhcc-CCCEEEEEE
Q 018037 244 SPSYYK--RGDYVPGLKVDGMDALAVK--------------QACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 244 ~~~~~~--~g~gi~g~~VdG~D~~av~--------------~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
.+.+.. ++.|+.-+.|-..|+..+. +.+....+..|+ +|+++|...
T Consensus 567 v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~ 629 (1186)
T PRK13029 567 VPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD 629 (1186)
T ss_pred HHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 122222 6788877665323443332 223333333335 888888654
|
|
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.58 Score=41.26 Aligned_cols=103 Identities=10% Similarity=0.045 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHH-hCCCCeEEEEEcCCc-ccccccccccCCchHhh-
Q 018037 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA-LWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK- 249 (362)
Q Consensus 173 G~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~-~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~- 249 (362)
+.+..+|.|..++ .+..++|+.+=|.. ...-+|..|. ..++|+|+|+-.-+. +-..+..... ..+..
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~--g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPM--GRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccch--hhhhHH
Confidence 4555666666643 34566788777743 4566677888 999999999854443 2111111000 01111
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
...+++...++ +++++ .++.+|+..+.+ ++|+.|-+
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 11456777774 68899 999999999988 89998866
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.14 Score=45.34 Aligned_cols=106 Identities=19% Similarity=0.097 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~ 252 (362)
..-+|.|.+++. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-+-..........+. ..|... +.+
T Consensus 51 A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~~d~~~~~~~~ 123 (172)
T PF02776_consen 51 AAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQ-EIDQQSLFRPV 123 (172)
T ss_dssp HHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTS-STHHHHHHGGG
T ss_pred hHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhccccccc-chhhcchhccc
Confidence 345667776654 2334455555556655 3345666888999999998776543211111110 112222 233
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHh-cc-CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHA-LK-NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~a-r~-~gP~lIe~~ 289 (362)
.-...+++ +++++.+++++|+..+ .. +||++|++-
T Consensus 124 ~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 124 TKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred cchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 44456774 6778888889998888 45 899999984
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.39 Score=41.97 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHH-HHHhCCCCeEEEEEcCCccc--ccccccccCCchHhhhcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN-IAALWDLPAILVCENNHYGM--GTAEWRAAKSPSYYKRGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn-~A~~~~LPvIfVv~NN~~gi--~t~~~~~~~~~~~~~~g~ 252 (362)
+++|.|+|+. + .++++..+ ..+.+ ..++.+. .++.+++|+++++...+++. ..+++.. ..++.-. -
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~a~~-~ 120 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDIALL-R 120 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHHHHh-c
Confidence 3567777753 2 34555555 44433 3445555 89999999999988766543 2222211 1122211 2
Q ss_pred CcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 253 YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 253 gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.+|++.| .-.|+.+++..++.|++. ++|++|-+
T Consensus 121 ~iPg~~v~~Ps~~~~~~~ll~~a~~~---~~P~~irl 154 (156)
T cd07033 121 AIPNMTVLRPADANETAAALEAALEY---DGPVYIRL 154 (156)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHhC---CCCEEEEe
Confidence 4666654 446888999999998865 77998854
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.38 Score=48.41 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh-h-c-
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-R-G- 251 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~-~-g- 251 (362)
.+.+|+|+++|- .++++..-=+++. -.+|.+-+++-.++|+|+++.+.. |.++.........|+.. + +
T Consensus 60 A~~~a~GAs~aG------~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~-gp~tg~p~~~~q~D~~~~~~~~ 130 (376)
T PRK08659 60 SMAAVIGASWAG------AKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGDMMQARWGT 130 (376)
T ss_pred HHHHHHhHHhhC------CCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecC-CCCCCCCCCcCcHHHHHHhccc
Confidence 467788888863 3455443222222 357889999999999888777754 22221111111223322 2 1
Q ss_pred CC-cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018037 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 252 ~g-i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~ 299 (362)
+| ++-+.+.-.|+.++++....|++.+.+ +-|++|-...| -+|+..
T Consensus 131 hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 22 454667778999999999999999888 89999998883 778753
|
|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.45 Score=47.45 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccc--ccccccCCchHhh-h-
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYK-R- 250 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t--~~~~~~~~~~~~~-~- 250 (362)
.+.+|+|+++| +.++++.+-|+.+. -.+|.|.+|+-..+|+++++.+-. +-++ .+..+ ...+.. +
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~t~~eq--~D~~~~~~~ 128 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGNIQPSQ--GDYFQAVKG 128 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCCCcchh--HHHHHHHhc
Confidence 46778888886 34677777666654 378999999999999888777654 3222 11111 112222 2
Q ss_pred -cCC-cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018037 251 -GDY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 251 -g~g-i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~ 298 (362)
|.| .+.+..+-.|+.++++...+|++.+.+ .-|+++-..++ -+|+.
T Consensus 129 ~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 129 GGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred CCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 222 344566778999999999999999888 89999998884 36654
|
|
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.71 Score=40.69 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-ccccc--ccccCCc---hHhh
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRAAKSP---SYYK 249 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~--~~~~~~~---~~~~ 249 (362)
.-+|-|.+.+. +-.++++..|=|.+| ..-++..|...+.|+|+|+-+.... .++.. ....... |...
T Consensus 48 ~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (162)
T cd07038 48 GYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120 (162)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHH
Confidence 34556666543 234555555777776 4456777889999999998765432 11111 1000001 1111
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
+.+.-...+| .+++++.+.+++|+..+.. +||++|++
T Consensus 121 ~~~~~tk~~~~v--~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 121 MFEEITCAAARL--TDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHhheeEEEEe--CCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 1122233556 3788899999999988888 89999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.47 Score=42.04 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|-|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-+-.... .... .+. .|... +..
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q~--~d~~~l~~~v 118 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTGA-NQT--IDQVGLFGDY 118 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCCC-Ccc--cchhhhccce
Confidence 34566666543 3445666666777776 33457778899999999987644321 1110 010 11111 001
Q ss_pred CcceEEEeCCCHHH------HHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALA------VKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~a------v~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
--...+|. ++++ +.+.+.+|+..+.. .||++|++-
T Consensus 119 tk~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 119 VRWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eeEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 11123342 3334 67778888877766 599999873
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.54 Score=44.10 Aligned_cols=108 Identities=21% Similarity=0.148 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc---cccccccccCCchH-hhhc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG---MGTAEWRAAKSPSY-YKRG 251 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g---i~t~~~~~~~~~~~-~~~g 251 (362)
+.+++|++++- .+...+.-|-|= + ...|.|-+++-.++|+|+++.|-.-. +.+..+ ..|+ ..+-
T Consensus 49 ~~~~~GAs~aG-----~ra~t~ts~~Gl-~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~~----q~D~~~~~d 116 (230)
T PF01855_consen 49 MEAAIGASAAG-----ARAMTATSGPGL-N--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQPE----QDDLMAARD 116 (230)
T ss_dssp HHHHHHHHHTT-------EEEEEECCHH-H--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB-----SHHHHHTTT
T ss_pred HHHHHHHHhcC-----CceEEeecCCcc-c--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcCC----hhHHHHHHh
Confidence 56677777753 133334444333 2 25577889999999988877764431 222222 1233 3344
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018037 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 252 ~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~ 298 (362)
++++ .+...|+.++++....|.+.+.+ .-|+++-...++. .|+.
T Consensus 117 ~~~~--vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 117 SGWI--VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp SS-E--EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred cCeE--EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 5664 44556899999999999999988 9999999988875 3554
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.99 Score=45.46 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC---cccccccccccCCchHhhh-
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH---YGMGTAEWRAAKSPSYYKR- 250 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~---~gi~t~~~~~~~~~~~~~~- 250 (362)
.+.+|+|+++|- .++++.+-=+++. -.+|.+-+++-..+|+++++.+-. -|+-+..++. .+.+...
T Consensus 59 A~~~a~GAs~aG------~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~--D~~~~~~~ 128 (375)
T PRK09627 59 GISVALGASMSG------VKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQG--DVNQAKNP 128 (375)
T ss_pred HHHHHHHHHhhC------CCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchH--HHHHHhcC
Confidence 366788888763 3444444333332 257889999999999987776643 2332222111 1112221
Q ss_pred cCC-cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018037 251 GDY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 251 g~g-i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~ 299 (362)
++| .+-+.+.-.|+.++++...+|++.+.+ .-|++|-... +. +|+..
T Consensus 129 ~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 129 THGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred CCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 222 334566778999999999999999888 9999998888 33 77653
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.3 Score=47.01 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|.|.+.+ .++-.++++..|=|.+| ..-++..|...+.|+|+|+-............+ ..|... +.+.-
T Consensus 57 ~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~itk 128 (576)
T PRK08611 57 LAAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQ--EVNLEKMFEDVAV 128 (576)
T ss_pred HHHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCCCCcc--ccCHHHHhhcccc
Confidence 445666544 34556777777998887 345577788999999999876543211111111 112222 11222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
...+| .+++++.+++.+|+..+.. .||++|++-
T Consensus 129 ~~~~v--~~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 129 YNHQI--MSAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred eeEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 23455 4788899999999888877 899999985
|
|
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=91.92 E-value=1 Score=40.12 Aligned_cols=98 Identities=21% Similarity=0.165 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHH-HHHHhC--------CCCeEEEEEcCCcccccccccccCCch
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALW--------DLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Eal-n~A~~~--------~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
++.|.|+|+. +.++|+.+.=+.+.. -.+|-+ +-++.+ ++||++++..-+++...+++ ...+
T Consensus 57 vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~~~ 126 (167)
T cd07036 57 VGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQSL 126 (167)
T ss_pred HHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hhhH
Confidence 4566777763 234554322233332 233333 334443 69999998766655333321 1222
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
. +.--.+|++.| .=.|+.+.+..++.++++ ++|+++-
T Consensus 127 ~-a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~---~~P~~~~ 164 (167)
T cd07036 127 E-AWFAHIPGLKVVAPSTPYDAKGLLKAAIRD---DDPVIFL 164 (167)
T ss_pred H-HHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 2 21124566544 346888999999888875 8998873
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.6 Score=45.93 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhh--cCCcc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVP 255 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~ 255 (362)
+|.|.|.+ .++-.+|++..|=|.+| ..-++..|..-+.|+|+|+-.-..........+ ..|.... .+-..
T Consensus 54 mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~ 125 (549)
T PRK06457 54 AASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQ--EVNLTKLFDDVAVF 125 (549)
T ss_pred HHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhccceeE
Confidence 45565554 34556677777888887 345677888999999999865332210000001 1121111 11111
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
..+| .+++++...+++|+..+.. .||+.|++-.
T Consensus 126 ~~~v--~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 126 NQIL--INPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 2345 4788888899999888877 8999999963
|
|
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=91.33 E-value=2.1 Score=43.32 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh-hcCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDY 253 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~-~g~g 253 (362)
.+.+|+|+++|- .++++.+--.+++ ..+|.|-+|+-.++|+|+++.|-... ++........|+.. +.-|
T Consensus 61 A~~~aiGAs~aG------aRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~g 130 (390)
T PRK08366 61 AMAACIGASAAG------ARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDTG 130 (390)
T ss_pred HHHHHHHHHhhC------CCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhcC
Confidence 367788888863 3455544333333 36899999999999988777654332 22222111223322 2223
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~ 298 (362)
. +..-..|+.++++....|++.+.+ .-|+++-...|+.. |..
T Consensus 131 ~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 131 W--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred E--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 3 333447899999999999999888 99999999888854 443
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.8 Score=45.43 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++..|..-+.|+|+|+-.-... ++... .+ ..|... +.+
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q--~~d~~~~~~~~ 121 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGTDA-FQ--EIDVLGLSLAC 121 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCC-Cc--ccchhccccCc
Confidence 34455665543 4556777777888887 3456778889999999987543321 11110 01 011111 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+|+ +++++...+++|+..++. .||+.|++-.
T Consensus 122 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 122 TKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 12235664 788999999999988877 4999999863
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=90.57 E-value=2 Score=45.19 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|-|.+.+. ++-.++++..|=|.+|. --++..|...+.|+|+|+-.................|... +.+--
T Consensus 54 ~mAdgyar~t---g~~gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk 127 (554)
T TIGR03254 54 YAAAAAGFLT---QKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAK 127 (554)
T ss_pred HHHHHHHHHh---CCCEEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhe
Confidence 3455655543 44567777779998873 3457788899999999986544321000000000112221 11222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+|+ +++++.+.+.+|+..+.+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 128 AAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 235664 788999999999888876 5899999863
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.53 E-value=2 Score=45.49 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|.|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-..........+ ..|... +.+-.
T Consensus 56 ~mAdgYar~t---g~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~~tk 127 (574)
T PRK07979 56 HMADGLARAT---GEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIGYDAFQ--ECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHHHh---CCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccCCCCCc--eecHHHHhhcccc
Confidence 3555665543 4556778888999887 334577788999999999865332110000001 112222 11222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+| ++++++...+++|+..+.. .||++|++-.
T Consensus 128 ~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 128 HSFLV--KQTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 23556 4799999999999988877 5999999864
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.8 Score=45.96 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHh-hh-c-
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYY-KR-G- 251 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~-~~-g- 251 (362)
.+.+++|+++|- .++++.+-=.+++ ..+|.|.+|+-..+|+|+++.|.. |.++.....+...|+. .+ +
T Consensus 249 A~~~a~GAs~aG------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYAG------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhcC------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcCC
Confidence 366788888763 3444444333333 478999999999999877766543 3332211111112222 22 2
Q ss_pred CC-cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 252 ~g-i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
.| .+-+.+.-.|+.++++...+|++.+.+ .-|+++-...|.
T Consensus 320 hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 320 HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 11 344566778999999999999999888 999999999885
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=90.46 E-value=2.8 Score=42.52 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh-hcCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDY 253 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~-~g~g 253 (362)
.+.+++|+++|- .++++.+--.+++ ..+|.|.+|+-.++|+++++-|-..+- +........|+.. +..|
T Consensus 62 A~~~~~GAs~aG------aRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~~~rd~g 131 (394)
T PRK08367 62 AISACVGASAAG------VRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTISQRDTG 131 (394)
T ss_pred HHHHHHHHHhhC------CCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHHhccccC
Confidence 367788888763 3444444222222 368999999999999998886654442 2221111123332 3344
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCCCCC
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~---~gP~lIe~~tyR~~GHs~ 298 (362)
. +.+-..|+.++++-...|.+.+.+ .-|+++-...||. +|+.
T Consensus 132 ~--~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 132 W--MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred e--EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 3 333447999999999999988874 4799999999985 5543
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.2 Score=45.36 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+.+. ++-.++++..|=|++| ..-++..|...+.|+|+|+-.-... +... ..+ ..|... +.+-
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~l~~~~t 127 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--EAEQMPMFEDMT 127 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhhe
Confidence 3455555443 3456777777998877 3345777889999999998322211 1100 000 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
-...+| .+++++.+.+.+|+..++. .||+.|++-
T Consensus 128 k~~~~i--~~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 128 KYQEEV--RDPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred eEEEEC--CCHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 122455 4788999999999988888 899999986
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=2.7 Score=43.99 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.|.. .++-.++++..|=|.+| ..-++.-|...+.|+|+|+-..... .+..........|... +.+
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~ 125 (535)
T PRK07524 52 GFMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGV 125 (535)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhh
Confidence 3445555543 34446777777888887 3456778889999999988544321 1110000000012221 112
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
--...+| .+++++.+.+.+|+..+++ .||++|++-
T Consensus 126 tk~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 126 AAFSHTL--MSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred ceeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 2223455 4789999999999998886 699999986
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.4 Score=44.47 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhh--cCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi 254 (362)
-+|.|.|.+ .++-.++++..|=|.+| ..-++.-|...+.|+|+|+-+-..........+ ..|.... .+--
T Consensus 52 ~~A~gyar~---tg~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q--~~d~~~~~~~~tk 123 (547)
T PRK08322 52 FMAATYGRL---TGKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQ--IVDVVAMMAPLTK 123 (547)
T ss_pred HHHHHHHHh---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccCCCccc--cccHHHHhhhhee
Confidence 445566554 24455667777888887 345577788999999999854332111110111 1122111 1111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+| ++++++.+.+.+|+..+.. .||++|++-.
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 124 WTRQI--VSPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 22455 4788999999999988877 5899999864
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=89.89 E-value=2.5 Score=45.09 Aligned_cols=103 Identities=21% Similarity=0.199 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|.+| ..-++..|..-++|+|+|+-.-... +.... .+ ..|.... .+-
T Consensus 83 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~-~q--~~d~~~l~~~~t 153 (612)
T PRK07789 83 HAAEGYAQAT---GRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIGTDA-FQ--EADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCc-Cc--ccchhhhhhcce
Confidence 3455655543 4456677777888887 3455777889999999998543321 11100 00 0122111 111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+.+.+|+..++. .||++|++-.
T Consensus 154 k~s~~v--~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLV--TDADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEc--CCHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 223455 4888999999999988877 5999999864
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.8 Score=43.34 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHHhhCCCCCeEEEEeCCccccc-chHHHHHHHHHhCCCCeEEEEEcCCc-ccc-cccccccCCchHh
Q 018037 172 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNHY-GMG-TAEWRAAKSPSYY 248 (362)
Q Consensus 172 lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~-G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~-t~~~~~~~~~~~~ 248 (362)
=|.++++|.|+.+|- +++.++++=-.+++. -...-+|+-...+++|++++|-.-+. |.. -+++... . ...
T Consensus 35 E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~-G-~~t 107 (361)
T TIGR03297 35 EGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQ-G-RIT 107 (361)
T ss_pred chHHHHHHHHHHHhc-----CCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHH-h-HHH
Confidence 467788888988872 334444432222211 01222233356789999998876664 322 1221111 0 111
Q ss_pred h---hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 249 K---RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 249 ~---~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
. ...++|...++ .+.++..+.+..|++++.+ ++|+.|-+.
T Consensus 108 ~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 108 LSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 1 24789988885 3566778888888888877 999877664
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.4 Score=44.07 Aligned_cols=103 Identities=15% Similarity=-0.033 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|-|.|.+ .++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-... ..... .+ ..|.... .+-
T Consensus 53 ~mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~~~~~vt 123 (514)
T PRK07586 53 GAADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRKYDA-PL--TSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccCCCc-cc--ccchhhhhcccc
Confidence 345565554 34446677778888876 3344667889999999998653321 11100 00 1122221 111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+.+++|+..+.. .||++|++-.
T Consensus 124 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 124 GWVRRS--ESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 122445 4788999999999988887 5999999864
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=89.65 E-value=2.5 Score=44.76 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.|... ++-.++++..|=|.+| ..-++..|...+.|+|+|+-..... .... ..+ ..|... +.+-
T Consensus 66 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~l~~~it 136 (570)
T PRK06725 66 HAAEGYARAS---GKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIGKD-GFQ--EADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCcccccCC-CCc--ccchhhhhhccc
Confidence 3566666543 4456777778888877 3445777888899999988543321 1110 000 112222 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
....+|+ +++++.+.+++|+..++. .||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 2234563 788999999999998887 5999999863
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.64 E-value=3 Score=43.67 Aligned_cols=105 Identities=18% Similarity=0.102 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccC-CchHhh--hcCC
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAK-SPSYYK--RGDY 253 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~-~~~~~~--~g~g 253 (362)
+|.|.+.+. ++-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-.. .+.... .+.. ..|... +.+-
T Consensus 58 ~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 58 MAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhhc
Confidence 566666543 3445666777888887 345577788999999999854221 111100 0000 012211 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
-...+|+ +++++.+.+++|+..+.. .||++|++-..
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 2235564 788888899999988776 69999999753
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=89.58 E-value=2.9 Score=44.21 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+.+. ++-.++++..|=|++|. .-++..|...+.|+|+|+-.-.... ..... .....|... +.+-
T Consensus 61 ~mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~-~~q~~d~~~~~~~~t 133 (569)
T PRK09259 61 NAAAAAGFLT---QKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQG-DYEELDQLNAAKPFC 133 (569)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccCC-Cccccchhhhhhhhe
Confidence 3455555442 34456777778888873 3457788899999999986433211 00000 000112211 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
-...+| ++++++.+.+.+|+..+.. .||+.|++-
T Consensus 134 k~s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 134 KAAFRV--NRAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eeeEEc--CCHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 223456 4788999999999988876 599999986
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.6 Score=44.55 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCcc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi~ 255 (362)
+|-|.|.+ .++-.++++..|=|.+| ..-++..|..-+.|||+|+-............+ ..|... +.+--.
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQ--ETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhhcccee
Confidence 55666554 34456777777888887 345677888999999999864433211000001 112221 111122
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
..+|+ ++.++.+.+++|+..+.+ .||+.|++-..
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 34564 788999999999988876 59999998643
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.8 Score=44.33 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|...++|||+|+-.-... ..... -+ ..|... +..-
T Consensus 63 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~Q--~~d~~~l~~~vt 133 (578)
T PRK06112 63 AMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTDRNA-FQ--ELDHIALFQSCT 133 (578)
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCC-cc--ccChhhhhcccc
Confidence 3455666543 4556677777888877 3456777889999999998542221 11000 00 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+.+.+|+..++. .||+.|++-.
T Consensus 134 k~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 134 KWVRRV--TVAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred ceEEEe--CCHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 223455 4788999999999988877 4999999863
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.48 E-value=3 Score=44.51 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.|.. .++-.++++..|=|++| ..-+|..|..-+.|||+|+-+-... +.+... + ..|... +.+-
T Consensus 74 ~aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~-Q--e~d~~~~~~~vt 144 (616)
T PRK07418 74 HAADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAIGTDAF-Q--ETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCCCc-c--cccHHHHhhhcc
Confidence 345555543 34556777777999887 3345778899999999988643321 111100 0 112211 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-C-CCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-N-GPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~-gP~lIe~~t 290 (362)
....+|+ +++++..++.+|+..+.+ + ||++|++-.
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 2234564 788999999999998877 4 999998863
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.40 E-value=2.8 Score=44.20 Aligned_cols=103 Identities=20% Similarity=0.105 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.|.. .+.-.++++..|=|.+| ..-++..|...+.|||+|.-.-.... .... .+ ..|... +.+
T Consensus 56 ~~~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~i~~~~ 126 (572)
T PRK06456 56 AHAADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGKMA-FQ--EADAMGVFENV 126 (572)
T ss_pred HHHHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCCCC-cc--ccchhhhhhcc
Confidence 3445565554 23445666677998887 33457778899999999875433211 1100 01 011111 112
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
--...+| ++++++.+.+.+|+..+.. .||+.|++-
T Consensus 127 tk~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 127 TKYVIGI--KRIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred ceeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 2223455 4788999999999988877 599999986
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.1 Score=44.21 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|.|.|.+.. ++-.++++..|=|++| ..-++..|..-+.|+|+|+-+-..........+ ..|... +.+-.
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q--~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHKEDFQ--AVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccChhhHhhccee
Confidence 44555554320 3445667777888887 334577788999999999865443211100001 112221 11112
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+| .+++++..++++|+..++. .||+.|++-.
T Consensus 129 ~s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 129 WAVTV--REPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 23455 4788999999999998887 5999999863
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.32 E-value=2.4 Score=45.51 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=62.9
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCc
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~ 245 (362)
..|+-.+.+ ++|.|+|++ .-+++++++ +.+-+-.+-.-.+.++..++||+|++...++. ...+++.+ ..
T Consensus 356 d~GIaEq~~vg~AaGlA~~-----G~~Pvv~~~--a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~ 426 (617)
T TIGR00204 356 DVAIAEQHAVTFAAGMAIE-----GYKPFVAIY--STFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AF 426 (617)
T ss_pred cCCccHHHHHHHHHHHHHC-----CCEEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--ch
Confidence 345544443 567777752 224444444 45555333333466789999999999877763 21222222 12
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|+.- --.+|++.| .=.|+.+++..++.|++. .++|++|-.
T Consensus 427 dia~-lr~iPgl~V~~Psd~~e~~~~l~~a~~~--~~~Pv~ir~ 467 (617)
T TIGR00204 427 DISY-LRCIPNMVIMAPSDENELRQMLYTGYHY--DDGPIAVRY 467 (617)
T ss_pred HHHH-HhcCCCcEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 3221 124666654 335788888888888763 149998844
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=89.21 E-value=2.8 Score=44.14 Aligned_cols=104 Identities=21% Similarity=0.154 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|.|.|.+. ++-.++++..|=|.+| ..-++.-|...+.|+|+|.-.-..........+ ..|... +.+--
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~~~~~~tk 136 (564)
T PRK08155 65 FIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGTDAFQ--EVDTYGISIPITK 136 (564)
T ss_pred HHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccCCCcc--ccchhhhhhccce
Confidence 4466666543 3445666667888877 334577788999999999754332110000000 011111 11111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+| .+++++...+.+|+..++. .||+.|++-.
T Consensus 137 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~ 172 (564)
T PRK08155 137 HNYLV--RDIEELPQVISDAFRIAQSGRPGPVWIDIPK 172 (564)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 23455 4788999999999988876 4999999953
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=89.07 E-value=2.7 Score=44.54 Aligned_cols=104 Identities=23% Similarity=0.213 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|.-.-... +.... -+ ..|... +.+
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~~d~~~l~~~~ 134 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIGTDA-FQ--ETPIVEVTRSI 134 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcCCCc-Cc--ccchhhhhhhh
Confidence 34466666543 4456777788888887 3455777889999999987543321 11100 00 011111 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+| .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 135 tk~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 135 TKHNYLV--MDVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred eEEEEEc--CCHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 1223455 4788999999999998887 5999999964
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=2.4 Score=43.99 Aligned_cols=98 Identities=26% Similarity=0.219 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEe-CCcccccchHHHHHHHHH--------hCCCCeEEEEEcCCcccccccccccCCch
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~-GDGa~~~G~~~Ealn~A~--------~~~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
+++|+|+|++ .-++++.++ .+-. +=.+..-.|-++ .+++||+|+..|.++..... +. +.+
T Consensus 202 vg~AaGlA~~-----G~rPiv~~~~~~f~--~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~-hh---s~~ 270 (464)
T PRK11892 202 AGIGVGAAFA-----GLKPIVEFMTFNFA--MQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA-QH---SQD 270 (464)
T ss_pred HHHHHHHHhC-----CCEEEEEEehHHHH--HHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC-cc---ccC
Confidence 4667888774 224454443 2322 112333456667 89999999988877532111 11 112
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
+.+.--.+|++.| .=.|+.+.+..++.|++. ++|++|-
T Consensus 271 d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~---~~Pv~il 309 (464)
T PRK11892 271 YAAWYSHIPGLKVVAPYSAADAKGLLKAAIRD---PNPVIFL 309 (464)
T ss_pred HHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhC---CCcEEEE
Confidence 2222235676655 335788888888888854 8999863
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=88.94 E-value=3 Score=44.15 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+.. .++-.++++..|=|.+| ..-++..|...+.|+|+|.-.-.. .+.... .+ ..|... +.+-
T Consensus 53 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~~~~-~Q--~~d~~~l~~~vt 123 (579)
T TIGR03457 53 HMADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIGLGG-FQ--EADQLPMFQEFT 123 (579)
T ss_pred HHHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCCCCC-Cc--ccchhhhhhcce
Confidence 345555543 24456677777888887 334577788999999998732211 111100 00 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
-...+| .+++++.+.+.+|+..+.. +||++|++-
T Consensus 124 k~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 124 KYQGHV--RHPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred eEEEec--CCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 122445 4788899999999988888 899999985
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.88 E-value=3.5 Score=43.61 Aligned_cols=104 Identities=20% Similarity=0.193 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++.-|..-+.|+|+|.-..... +.... .+ ..|.... .+
T Consensus 66 ~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~-~q--~~d~~~l~~~~ 136 (571)
T PRK07710 66 IHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGSDA-FQ--EADIMGITMPV 136 (571)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCCCC-cc--ccchhhhhhcc
Confidence 34566666543 3445677777888877 3445777889999999987644322 11110 01 0111111 11
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-....+| .+++++...+++|+..++. .||+.|++-.
T Consensus 137 tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 137 TKHNYQV--RKASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred cceEEec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 1122345 4788999999999988877 5999999864
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=88.75 E-value=3.4 Score=43.74 Aligned_cols=103 Identities=18% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|-|.+. ..++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-.. .+.... .+ ..|... +.+-.
T Consensus 53 ~Adgyar---~tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~id~~~~~~~vtk 123 (575)
T TIGR02720 53 AAAADAK---LTGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMNMDT-FQ--EMNENPIYADVAV 123 (575)
T ss_pred HHHHHHH---hhCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCC-cc--eechhhhhhhcce
Confidence 3555554 334556777778888877 345577788999999999865432 111111 00 011111 11111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
...+| .+++.+.+.+.+|+..+.+ .||+.|++-..
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 124 YNRTA--MTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 12344 4677888888888887777 89999998643
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.71 E-value=3.5 Score=43.02 Aligned_cols=103 Identities=18% Similarity=0.062 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.|.+ .++-.++++..|=|++| ..-++..|..-+.|||+|+-..... ..... .+ ..|... +..-
T Consensus 57 ~mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~~~~~vt 127 (518)
T PRK12474 57 GAADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQYDA-PL--TSDIDGFARPVS 127 (518)
T ss_pred HHHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCCCC-cc--ccCHHHhhhccc
Confidence 345566554 34556777778999876 3345667889999999988643321 11100 00 112222 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+++++|+..+.+ .||++|++-.
T Consensus 128 k~~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 128 RWVHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 122345 4888999999999988776 5999999864
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=3.8 Score=42.89 Aligned_cols=106 Identities=19% Similarity=0.112 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.+.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-.- .+...........|.... .+-
T Consensus 55 ~~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 128 (544)
T PRK07064 55 NMADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVS 128 (544)
T ss_pred HHHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhc
Confidence 345666654 34456777777988887 345677788999999999864221 111100000000122211 111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| ++++++.+++.+|+..+.. .||+.|++-.
T Consensus 129 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 129 KAAFRV--RSAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred ceEEEe--CCHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 223456 4788888899999888766 6999999863
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=88.51 E-value=3.7 Score=43.10 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhhhcCCcce
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYVPG 256 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~~g~gi~g 256 (362)
+|.|.+.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|.-.... .+.....+.....++. +.+--..
T Consensus 57 ~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~-~~~tk~~ 129 (552)
T PRK08617 57 MAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALF-RPITKYS 129 (552)
T ss_pred HHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhh-hhhcceE
Confidence 34454433 34446677777888887 334577788999999998753221 1111100000001111 1111223
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 257 LKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 257 ~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
.+| ++++++.+.+.+|+..+.. .||+.|++-.
T Consensus 130 ~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 130 AEV--QDPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred EEe--CCHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 456 4888999999999988877 5899999863
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=88.47 E-value=3.1 Score=43.75 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|-..+.|||+|.-.-... ..... .+ ..|... +.+-
T Consensus 60 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q--~~d~~~l~~~~t 130 (557)
T PRK08199 60 MMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFREREA-FQ--EIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCc-cc--ccCHHHhhhhhh
Confidence 345555544 34456677777888887 3455777889999999998543221 11100 01 012111 0111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
-...+| ++++++.+.+.+|+..+.. .||+.|++-
T Consensus 131 k~~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 131 KWVAEI--DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 112455 5888999999999988877 599999886
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=88.47 E-value=3.9 Score=43.06 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+... ++-.++++..|=|.+| ..-++.-|...+.|||+|+-.-... .... ..+ ..|... +.+-
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~t 123 (558)
T TIGR00118 53 HAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIGSD-AFQ--EADILGITMPIT 123 (558)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCC-CCc--ccChhhhhcCcc
Confidence 3456665543 4455777777888877 3455777889999999987542211 1110 001 011111 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
....+|+ +++++.+.+.+|+..+.. .||+.|++-
T Consensus 124 k~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 124 KHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 2335563 788999999999988877 489999985
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.18 E-value=3.7 Score=43.50 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc---ccccccccccCCchHhhh--
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKR-- 250 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~---gi~t~~~~~~~~~~~~~~-- 250 (362)
.-+|.|.|. ..++-.+|++..|=|++| ..-.|..|..-+.|+|.|.-.-.. |....++ .|....
T Consensus 52 a~mAdgyar---~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g~~afQe-----~D~~~l~~ 120 (550)
T COG0028 52 AFAADGYAR---ATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQE-----VDQVGLFR 120 (550)
T ss_pred HHHHHHHHH---HcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccCcchhhh-----cchhhHhh
Confidence 344555554 456778999999999988 445688899999999988652211 2111111 122221
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 251 g~gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
.+--...+| .+++++.+.+++|+..+.+ .||++|++-
T Consensus 121 p~tk~~~~v--~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 121 PITKYNFEV--RSPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred hhheeEEEe--CCHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 111223566 4889999999999999887 489999985
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.14 E-value=3.9 Score=43.17 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.+.+. ++-.++++..|=|.+|. .-++..|...+.|+|+|.-.-... .... ..+ ..|... +.+-
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~-~~q--~~d~~~l~~~vt 126 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTD-AFQ--ECDMLGISRPVV 126 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-ccc--ccchhhhhhccc
Confidence 3455555442 34556777778888773 345777889999999998543322 1110 001 011111 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
....+| .+++++...+.+|+..+.. .||+.|++-.
T Consensus 127 k~s~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 127 KHSFIV--KNAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred ceEEEe--CCHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 223566 4788888899999988766 5999999864
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.12 E-value=3.4 Score=44.05 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~g 253 (362)
.-+|-|.+.. .++-.++++..|=|.+|. .-++..|...+.|+|+|.-.-..........+ ..|... +.+-
T Consensus 62 ~~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARS---TGKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGSDAFQ--ECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCCCCCc--ccchhhhhhhhe
Confidence 3445566543 344567777778888873 34577788999999998865432110000001 112111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| ++++++.+.+.+|+..++. .||+.|++-.
T Consensus 134 k~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 134 KHNWLV--KDVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEEe--CCHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 123456 4889999999999999888 5999999853
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=88.07 E-value=4.2 Score=42.58 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|.|.|.. .++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-... ..... .+ ..|... +.+--
T Consensus 51 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~~d~~~~~~~~tk 121 (539)
T TIGR02418 51 MAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLLKLT-HQ--SMDNVALFRPITK 121 (539)
T ss_pred HHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccccCc-cc--ccchhhhhhccee
Confidence 45555543 34456777777888877 3445777889999999998643221 11000 00 111111 11111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...++ ++++++.+.+.+|+..+.. .||+.|++-.
T Consensus 122 ~~~~i--~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 122 YSAEV--QDPDALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 12344 4788999999999988776 5899999864
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.04 E-value=4.1 Score=42.76 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc---ccccccccccCCchHhhhcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~---gi~t~~~~~~~~~~~~~~g~g 253 (362)
-+|.|.+.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|.-+-.. +....++ .....+. +.+-
T Consensus 56 ~~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~--~d~~~l~-~~~t 126 (542)
T PRK05858 56 FAAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQE--IDHVPFV-APVT 126 (542)
T ss_pred HHHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcc--cchhhhh-hhhh
Confidence 445666654 23445666666788776 345577888999999988754332 2111111 0011111 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+|+ +++.+.+.+.+|+..+.. .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 2234553 688899999999988866 5899999853
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=87.71 E-value=4.2 Score=43.25 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCcc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi~ 255 (362)
+|-|.|.+. .++-.++++..|=|++| ..-++..|...+.|||+|+-.-..........+ ..|... +..--.
T Consensus 56 mAdgyaR~t--~g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q--~~D~~~~~~~vtk~ 128 (588)
T TIGR01504 56 MAEGYTRAT--AGNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHKEDFQ--AVDIAAIAKPVSKM 128 (588)
T ss_pred HHHHHHHhc--CCCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccCHHHHhhhhceE
Confidence 445555432 03344556666888877 334577788999999999854443211110001 112221 111122
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
..+| .+++++.+.+++|+..++. .||++|++-.
T Consensus 129 ~~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 129 AVTV--REAALVPRVLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred EEEc--CCHHHHHHHHHHHHHHHccCCCCeEEEEeCc
Confidence 3455 3788999999999998877 5899999864
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=87.19 E-value=7.3 Score=34.61 Aligned_cols=111 Identities=22% Similarity=0.257 Sum_probs=60.4
Q ss_pred Cccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHH-HHHhCCCCeEEEEEcCCcccc--cccccccC
Q 018037 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALN-IAALWDLPAILVCENNHYGMG--TAEWRAAK 243 (362)
Q Consensus 169 ~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn-~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~ 243 (362)
.|+-... +++|+|+|++-+ -..+++..++|=.. .|-..++.+. ....+++|+. |+..-+++.+ .+.+. +
T Consensus 53 ~gIaE~~~vg~a~GlA~~G~---~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~--s 126 (178)
T PF02779_consen 53 TGIAEQNMVGMAAGLALAGG---LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHH--S 126 (178)
T ss_dssp --S-HHHHHHHHHHHHHHSS---SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTS--S
T ss_pred cCcchhhccceeeeeeeccc---ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccc--c
Confidence 3444433 467778877531 12345566655443 0123455554 7889999998 6655554332 22221 1
Q ss_pred CchHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
..+..-. -.+|+++| .=.|+.++...++.|++. + ++|++|-.
T Consensus 127 ~~d~~~~-~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 127 IEDEAIL-RSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp SSHHHHH-HTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred ccccccc-ccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 2222221 23566554 446899999999999873 3 79998855
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=87.14 E-value=5.6 Score=40.45 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh-hcCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDY 253 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~-~g~g 253 (362)
.+.+++|++++- .++++.+--.+++ ..+|.|-+|+-.++|+|+++.+-..+- +.......+|+.. +.-|
T Consensus 68 A~~~~~GAs~aG------aRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~~r~~g 137 (407)
T PRK09622 68 AMSACVGAAAAG------GRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYLSRDSG 137 (407)
T ss_pred HHHHHHHHHhhC------cCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCC--CcCCCchHHHHHHHhcCC
Confidence 356788888763 3454444222222 368999999999999888888776432 1222222234433 4344
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCCCC
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHS 297 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~---~gP~lIe~~tyR~~GHs 297 (362)
+ +.+.-.++.++++....|.+.+.+ .-|+++-...++. +|.
T Consensus 138 ~--ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 138 W--ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred e--EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 4 445667999999999999988765 5899998888763 443
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.03 E-value=4.6 Score=42.66 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|-|.+.. .++-.++++..|=|.+| ..-++..|...+.|||+|.-.... .+.... .+ ..|... +.+
T Consensus 61 ~~~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~~~~~i 131 (566)
T PRK07282 61 LHEAEGYAKS---TGKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIGKDA-FQ--EADIVGITMPI 131 (566)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCCCCC-cc--ccChhchhcCC
Confidence 3445565554 24456777777888877 334577788899999999865332 121111 00 011111 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-....+|+ +++++.+.+.+|+..++. .||+.|++-.
T Consensus 132 tk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 132 TKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred CceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 12234553 788899999999998877 5999999864
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=86.91 E-value=5.3 Score=42.40 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-... +... ..+ ..|... +.+
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~l~~~~ 121 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIGND-AFQ--EIDALGIFMPI 121 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCC-CCc--cccHhhHHhhh
Confidence 34556665543 3456677777888887 3345777889999999987432211 1100 000 011111 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+| ++++++...+.+|+..+.. .||+.|++-.
T Consensus 122 tk~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 122 TKHNFQI--KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred cceEEec--CCHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 1223455 4788899999999988877 5999999863
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=86.61 E-value=4.9 Score=42.22 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccc--cccccCCc-hHhhh--c
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTA--EWRAAKSP-SYYKR--G 251 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~--~~~~~~~~-~~~~~--g 251 (362)
+|.|.|.+ .++-.++++..|=|++|. .-++..|...+.|||+|.-+.... +... ++.+.... +.... .
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 35555553 345567777889998873 345777889999999998654321 1111 01111001 12111 1
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 252 ~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
.--...+| .+++.+.+.+.+|+..+.. .||++|++-.
T Consensus 127 vtk~~~~v--~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 127 VTCDQAVL--DDPATAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred heEEEEEe--CChHHhHHHHHHHHHHHHHCCCCEEEEech
Confidence 11112344 3667777777777777766 8999999864
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=86.59 E-value=4.8 Score=42.58 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.|.+. ++-.++++..|=|.+|. .-++..|...+.|+|+|.-.-... .... ..+ ..|... +.+
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~i 125 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIGND-AFQ--ECDMIGISRPV 125 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-CCc--ccchhHHhhhc
Confidence 34566666543 44556677778888773 345777888999999887543221 1100 000 112211 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+|+ +++++.+.+++|+..++. .||+.|++-.
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 126 VKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 12234664 788999999999998877 5999999853
|
|
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=86.51 E-value=4.2 Score=40.69 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEe-CCcccccchHHHHHHHHHhCC--------CCeEEEEEcCC-cccccccccccCCc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAALWD--------LPAILVCENNH-YGMGTAEWRAAKSP 245 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~-GDGa~~~G~~~Ealn~A~~~~--------LPvIfVv~NN~-~gi~t~~~~~~~~~ 245 (362)
++.|+|+|++- .+++++++ .|-. +=.+.+-.+-++.++ +||+|++.+.. +|. .+++.+ .
T Consensus 87 vg~AaGlA~~G-----~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~-G~tH~~---~ 155 (356)
T PLN02683 87 TGIGVGAAYAG-----LKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGV-GAQHSQ---C 155 (356)
T ss_pred HHHHHHHHHCC-----CEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCC-CCcccc---C
Confidence 46677877642 24444443 3322 212333445666666 99999987732 232 222211 1
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
+. +.--.+|++.| .=.|+.+++.+++.|++. ++|++|-
T Consensus 156 ~~-a~lr~iPnl~V~~Pad~~e~~~~l~~a~~~---~gPv~ir 194 (356)
T PLN02683 156 FA-AWYSSVPGLKVLAPYSSEDARGLLKAAIRD---PDPVVFL 194 (356)
T ss_pred HH-HHHhcCCCCEEEEeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 22 21123666554 335888998889888754 8999885
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=86.36 E-value=3.7 Score=44.31 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=62.7
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCc
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~ 245 (362)
..|+-.+. +++|.|+|+. .-+++++++. .+.+-.+-+-.+.++..++||+|++...++. ...+++.+. .
T Consensus 403 dvGIAEq~~Vg~AaGLA~~-----G~rPvv~~fs--~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~--~ 473 (641)
T PLN02234 403 DVGIAEQHAVTFAAGLACE-----GLKPFCTIYS--SFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGA--F 473 (641)
T ss_pred CCCcCHHHHHHHHHHHHHC-----CCeEEEEehH--HHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccccc--H
Confidence 34554443 3556777663 2345555543 3444333344467789999999999777652 222222221 2
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
|..- .-.+|++.| .=.|+.+++.+++.|+.. .++|++| ...|.
T Consensus 474 Dia~-lr~iPnl~V~~Psd~~E~~~~l~~a~~~--~~~Pv~i--r~~R~ 517 (641)
T PLN02234 474 DVTF-MACLPNMIVMAPSDEAELFNMVATAAAI--DDRPSCF--RYHRG 517 (641)
T ss_pred HHHH-HhcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEE--Eeecc
Confidence 2221 114666554 335788888888877652 2689988 44443
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=86.15 E-value=4.5 Score=43.02 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.|.+. ++-.++++..|=|++| ..-++.-|..-+.|+|+|+-.-... +.... .+ ..|... +..-
T Consensus 56 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~-~q--~~d~~~l~~~vt 126 (597)
T PRK08273 56 FMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALGGHY-QQ--EVDLQSLFKDVA 126 (597)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcCCCC-CC--ccCHHHHHHHHH
Confidence 3455655543 3445677777888887 3345777889999999998432211 11100 00 111111 0111
Q ss_pred -cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 254 -VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 254 -i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
-...+|+ +++++.+.+.+|+..+.. .||++|++-..
T Consensus 127 ~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 127 GAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 1224563 788899999999988877 89999998643
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=86.01 E-value=6.2 Score=41.87 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|.|.+.. .++-.++++..|=|.+|. .-++..|..-+.|+|+|+-.-.. .+.... .+ ..|... +.+--
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~~d~~~~~~~~tk 136 (585)
T CHL00099 66 AADGYARS---TGKVGVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTDA-FQ--EVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHh---cCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCC-cc--ccchhhhhcCcee
Confidence 45555543 344566777778888873 34577788999999998754221 111100 00 112111 11212
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+|+ +++++.+.+++|+..++. .||+.|++-.
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 234564 788999999999988876 5899999863
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.56 E-value=6.7 Score=41.37 Aligned_cols=104 Identities=20% Similarity=0.155 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++..|..-+.|+|+|.-.-... +... ..+ ..|.... .+
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~i 128 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIGND-AFQ--EADITGITMPI 128 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccCCC-Ccc--ccchhhhccCc
Confidence 34555665543 4456777777888887 3445777889999999887432211 1100 000 1122111 11
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+| .++.++.+.+.+|+..++. .||+.|++-.
T Consensus 129 tk~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 129 TKHNYLV--QDAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred ceEEEEe--CCHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 1122455 4788999999999988876 5999999953
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=85.48 E-value=6.9 Score=41.29 Aligned_cols=103 Identities=20% Similarity=0.130 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.|.. .++-.++++..|=|.+| ..-++.-|...+.|+|+|.-.-... .... ..+ ..|... +.+-
T Consensus 55 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~~t 125 (563)
T PRK08527 55 HAADGYARA---SGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIGTD-AFQ--EIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHhh---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-CCc--ccchhhhhhccc
Confidence 445555543 34456777777888887 3345777889999999887432211 0000 000 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| ++++++.+++++|+..++. .||+.|++-.
T Consensus 126 k~s~~v--~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLV--KSIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 122355 5899999999999998887 5899999863
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=85.23 E-value=5 Score=43.38 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=63.8
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~ 244 (362)
..|+-.+.+ ++|.|+|+.. .-.++++.+ ..+.+ ..++++.+++..++||+||....+++.+ .++++. .
T Consensus 400 ~~GIaEq~mv~~AaGlA~~g----G~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~--i 470 (653)
T TIGR00232 400 HYGVREFAMGAIMNGIALHG----GFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQP--I 470 (653)
T ss_pred eecccHHHHHHHHHHHHHcC----CCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCC--H
Confidence 345544443 5566666521 112333222 34544 5678889999999999999988777643 233211 1
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.+++-. -.+|++.| .=-|..++..+++.|++. .++|++|-+
T Consensus 471 edia~l-r~iPn~~v~~PaD~~E~~~~~~~a~~~--~~gP~~irl 512 (653)
T TIGR00232 471 EQLASL-RAIPNLSVWRPCDGNETAAAWKYALES--QDGPTALIL 512 (653)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCcEEEEE
Confidence 233221 13555443 235788888888888741 289998844
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=85.22 E-value=4 Score=43.19 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccc---cc--cccCC-chHhh
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTA---EW--RAAKS-PSYYK 249 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~---~~--~~~~~-~~~~~ 249 (362)
-+|-|.|.. .++-.++++..|=|.+| ..-++..|..-+.|||+|+-+-.... ... .. ..... .|...
T Consensus 64 ~~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~ 137 (569)
T PRK08327 64 SMAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGG 137 (569)
T ss_pred HHHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHH
Confidence 345555543 23446677777888877 34567888899999999987543321 100 00 00001 12211
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
+..--...+|+ +++++..++.+|+..++. .||++|++-
T Consensus 138 ~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 138 LVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 11111123553 788999999999988876 699999986
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.93 E-value=6.3 Score=40.34 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=59.2
Q ss_pred HHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc---ccccccccccCCchHhh--hcCC
Q 018037 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 179 A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~---gi~t~~~~~~~~~~~~~--~g~g 253 (362)
|-|.|.+. ++..+|++..|-|++|- -.-|.-|-.-+.|+|.+- .+. .|++..-+ ..|... |..-
T Consensus 145 AegYaR~s---gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQ---EadiVgisRScT 213 (675)
T KOG4166|consen 145 AEGYARSS---GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQ---EADIVGISRSCT 213 (675)
T ss_pred hhhhhhhc---CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEe--cccchhhcccchhc---cCCeeeeeeccc
Confidence 45655543 57789999999999883 233555667788865442 232 23332111 111111 1110
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (362)
-..+-| .|++++-.-+.+|++.+.+ .||+|+++
T Consensus 214 KwNvmV--kdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 214 KWNVMV--KDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred eeheee--ecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 011234 5899999999999999877 69999987
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.92 E-value=5.1 Score=43.54 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCc
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~ 245 (362)
..|+-.+. +++|.|+|+. .-+++++++. .|.+=.+-+-.+.++..++||+|++...++. ...+++.. ..
T Consensus 402 dvGIAEq~~vg~AaGLA~~-----G~kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~ 472 (677)
T PLN02582 402 DVGIAEQHAVTFAAGLACE-----GLKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AF 472 (677)
T ss_pred ccCcCHHHHHHHHHHHHHC-----CCeEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cH
Confidence 44555443 3567777663 2356666654 3444223335577789999999999877652 22222222 12
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|++-. -.+|++.| .=.|..+++.+++.|+.. .++|++|-.
T Consensus 473 Dia~l-r~iPnl~V~~Psd~~E~~~~l~~al~~--~~gPv~IR~ 513 (677)
T PLN02582 473 DVTYM-ACLPNMVVMAPSDEAELFHMVATAAAI--DDRPSCFRY 513 (677)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 32211 14566554 335788888888888753 259998854
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=84.91 E-value=8.1 Score=41.04 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|-|.|.+. ++-.++++..|=|.+| ..-++..|...+.|||+|.-.-... .+.. .-+ ..|... +.+--
T Consensus 74 ~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~l~~~itk 144 (587)
T PRK06965 74 AADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIGQD-AFQ--ECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-Ccc--cccHHHHhcCCcc
Confidence 566666543 3445667777888877 3345777888999999887432211 1100 000 111111 11111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+|. +++++.+.+.+|+..++. .||+.|++-.
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 234553 788999999999988877 4999999864
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.49 E-value=4.4 Score=44.09 Aligned_cols=109 Identities=9% Similarity=-0.016 Sum_probs=63.9
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCc
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~ 245 (362)
..|+-.+. +..|+|+|.. .-+++++++. .|-|=.+-+-.+-++.+++||+||+..-++.. ..+++.. ..
T Consensus 427 DvGIAEQhaVt~AAGLA~~-----G~kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g--~~ 497 (701)
T PLN02225 427 NVGMAEQHAVTFSAGLSSG-----GLKPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCG--AF 497 (701)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccc--cH
Confidence 44555443 3556777753 3367777773 56553344445557899999999987655421 1122221 12
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|++- --.+|++.| .=.|..+++..++.|+.. .++|++|-.
T Consensus 498 Dia~-lr~IPnm~V~aPsD~~El~~mL~~A~~~--~~gPv~IR~ 538 (701)
T PLN02225 498 DIAF-MSSLPNMIAMAPADEDELVNMVATAAYV--TDRPVCFRF 538 (701)
T ss_pred HHHH-HhcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCCEEEEe
Confidence 3221 124666655 335888888888887741 279999844
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=5.8 Score=42.81 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=64.2
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHH-HHHHhCCCCeEEEEEcCCcc-cccccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYG-MGTAEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Eal-n~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~ 244 (362)
..|+-.+.+ ++|.|+|+. .-++++.++. .+.+ ..++.+ +.++..++||+|++...++. ...+++.. .
T Consensus 365 d~GIaE~~mvg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~ 434 (641)
T PRK12571 365 DVGIAEQHAVTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--A 434 (641)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--c
Confidence 455555543 567777762 2345555544 3544 455555 66889999999999666542 22222222 1
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (362)
.+++-. -.+|++.| -=.|+.+++.+++.|+++ .++|++|-..
T Consensus 435 ~dia~l-r~iPnl~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~~ 477 (641)
T PRK12571 435 FDLAFL-TNLPNMTVMAPRDEAELRHMLRTAAAH--DDGPIAVRFP 477 (641)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEEe
Confidence 222221 24666544 335888999999988862 2799998553
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=9.1 Score=40.43 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|.-+-... ..... .+ ..+.... ..-
T Consensus 55 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-~Q--~~d~~~l~~~it 125 (574)
T PRK09124 55 FAAGAEAQL---TGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGSGY-FQ--ETHPQELFRECS 125 (574)
T ss_pred HHHHHHHHh---hCCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCC-cc--ccChhhhcccce
Confidence 345565544 23334444445777776 2234667888999999998653321 11100 00 0111110 111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
....+|+ +++++.+.+.+|+..+.. .||+.|++-
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 126 HYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 1123453 677888888888887777 899999984
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=83.53 E-value=9.5 Score=40.52 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-ccc--ccccccCCchHhh-----
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGT--AEWRAAKSPSYYK----- 249 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t--~~~~~~~~~~~~~----- 249 (362)
+|-|.|.+. + -.++++..|=|++| ..-++..|...+.|||+|+-.-... ... ..+.....+++..
T Consensus 69 mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 455555443 4 56778888888877 2345667888899999998643332 111 0010000011111
Q ss_pred hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 250 RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 250 ~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
+..-....+| .+++.+.+.+.+|+..++. .||++|++-.
T Consensus 142 ~~itk~s~~v--~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 142 QTVTCYQAVI--NNLEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred hceEEEEEEe--CCHHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 1111123455 3788888888888888877 8999999853
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.37 E-value=9.6 Score=40.42 Aligned_cols=102 Identities=14% Similarity=0.055 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|-|.+.+. ++-.+|++..|=|.+|. .-++..|...+.|+|+|.-+-... +... ..+ ..+... +.+--
T Consensus 56 mAdgyar~t---gk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~Q--e~d~~~l~~~~tk 126 (578)
T PRK06546 56 AAAAEAQLT---GKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSG-FFQ--ETHPDRLFVECSG 126 (578)
T ss_pred HHHhHHHhh---CCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCC-Ccc--ccChhhhccccee
Confidence 455555442 33345555567787772 234667889999999998542221 1100 000 001111 01111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
...+| ++++++.+.+.+|+..+.. .||+.|++-.
T Consensus 127 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 127 YCEMV--SSAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eEeEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 12455 3788888889999888877 8999999863
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.00 E-value=7.5 Score=41.37 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=62.7
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHH-HHHHHHhCCCCeEEEEEcCCccc-ccccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGM-GTAEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~E-aln~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~ 244 (362)
..|+-.+.+ ++|.|+|+. .-++++.++. .+.+ ..+| ..+.++..++||++++...++.. ..+++.+ .
T Consensus 325 ~~GIaE~~mvg~A~GlA~~-----G~~p~~~~f~--~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~--~ 394 (580)
T PRK05444 325 DVGIAEQHAVTFAAGLATE-----GLKPVVAIYS--TFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQG--A 394 (580)
T ss_pred CCChHHHHHHHHHHHHHHC-----CCeeEEEeeH--HHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccc--c
Confidence 445554443 567777763 2344444443 4544 3444 55668899999999998666531 1222221 1
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.|++-. -.+|++.| .-.|+.++..+++.|++. .++|++|-.
T Consensus 395 edia~l-r~iP~l~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~ 436 (580)
T PRK05444 395 FDLSYL-RCIPNMVIMAPSDENELRQMLYTALAY--DDGPIAIRY 436 (580)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEe
Confidence 222221 23566544 346888999999988862 279998854
|
|
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.92 E-value=11 Score=37.84 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh-hc
Q 018037 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK-RG 251 (362)
Q Consensus 174 ~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~-~g 251 (362)
+.+..++|+++|- -+..-+..|.|-+- .+|.+-+|+-..+|+|+++.+..... +-++.. ...|+.. +-
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~r~ 127 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAARD 127 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHHHc
Confidence 3477788888863 23444555555543 68999999999999998887776532 111111 1123222 32
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018037 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (362)
Q Consensus 252 ~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~ 294 (362)
-|++-+... |+.+.+...-.|...+.+ .-|+++-..-++..
T Consensus 128 ~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 128 TGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred cCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 355555544 777888777788888777 89999988877754
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.13 E-value=7.2 Score=41.56 Aligned_cols=109 Identities=11% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCch
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
..|+-.+. +++|.|+|+. + -+++++.+.+ +-+-.+-+-.+-++..++||+|++...++.-..+++.. ..|
T Consensus 324 d~GIaEq~~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~D 394 (581)
T PRK12315 324 DVGIAEQESVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFD 394 (581)
T ss_pred CCCchHHHHHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHH
Confidence 44555443 3566777753 2 3555566655 33322333455578999999999986655422222222 123
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
++-. -.+|++.| --.|+.++..+++.|++. .++|++|-.
T Consensus 395 ia~l-r~iPnl~V~~P~d~~e~~~~l~~a~~~--~~gP~~ir~ 434 (581)
T PRK12315 395 IPMI-SNIPNLVYLAPTTKEELIAMLEWALTQ--HEHPVAIRV 434 (581)
T ss_pred HHHH-hcCCCCEEEecCCHHHHHHHHHHHHhC--CCCcEEEEE
Confidence 2221 24666655 346888998888888752 269998855
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=81.53 E-value=9.7 Score=41.26 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=67.4
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccc--ccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t--~~~~~~~~ 244 (362)
..|+-.+.+ .+|.|+|+. +.-.++++.+. .|.+ -.++.+.+++..+|||+||+...+.+.+. ++++. .
T Consensus 407 ~~GIaEq~mv~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~--i 477 (661)
T PTZ00089 407 RFGVREHAMCAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQP--V 477 (661)
T ss_pred eeeecHHHHHHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCccc--H
Confidence 345554443 566677762 12245555553 6666 67888999999999999999888776432 22221 1
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.|++.. -.+|++.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 478 edia~l-R~iPn~~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 519 (661)
T PTZ00089 478 ETLALL-RATPNLLVIRPADGTETSGAYALALAN--AKTPTILCL 519 (661)
T ss_pred HHHHHH-hcCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 233221 13555544 235788888888888742 279999854
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=81.52 E-value=12 Score=38.99 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+.+ .++..++++..|=|.+| ..-++..|...+.|+|+|+-.-.+.. ......+ ..|... +.+-
T Consensus 62 ~~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~--~~d~~~l~~~~t 133 (530)
T PRK07092 62 GMADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFLA--AVQAAELPKPYV 133 (530)
T ss_pred HHHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchhc--ccCHHHhhcccc
Confidence 356666654 34555666667888775 34567788899999998876433321 1000000 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+.+.+|+..++. .||++|++-.
T Consensus 134 k~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 134 KWSIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred cceeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 112344 5788999999999988877 4899999863
|
|
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=81.25 E-value=8.7 Score=37.87 Aligned_cols=104 Identities=23% Similarity=0.190 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeC-CcccccchHHHHHHHHHhC--------CCCeEEEEEcCCcccccccccccCCch
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYG-DGAANQGQLFEALNIAALW--------DLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~G-DGa~~~G~~~Ealn~A~~~--------~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
++.|+|+|++ .-+++++++. +-. +=.+..-.+-++.+ ++|+++...+-.++...+++.+.
T Consensus 64 vg~AaGlA~~-----G~~Piv~~~~~~f~--~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~---- 132 (327)
T PRK09212 64 AGLAVGAAFA-----GLRPIVEFMTFNFS--MQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC---- 132 (327)
T ss_pred HHHHHHHHHc-----CCeeEEEeehhhHH--HHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC----
Confidence 4667777764 2245555553 322 11122222333333 67788877664454433333222
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
+.+.--.+|++.| .=.|+.+++.+++.|++. ++|++|-..-.|+
T Consensus 133 ~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~~---~~Pv~i~~~~~~~ 177 (327)
T PRK09212 133 YAAWYSHIPGLKVVAPYFAADCKGLLKTAIRD---PNPVIFLENEILY 177 (327)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEEEchhhc
Confidence 2121134676655 346888998888888864 8999884443333
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.32 E-value=12 Score=40.66 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccc--ccccccCC
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t--~~~~~~~~ 244 (362)
..|+-.+. +.+|.|+|+- +.-.++++.+ +.|.+ ..++.+.+++..++||+||....+++.+. ++++. .
T Consensus 406 ~~GIaEq~mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~--i 476 (663)
T PRK12753 406 HYGVREFGMTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQP--V 476 (663)
T ss_pred EeeecHHHHHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCccccc--H
Confidence 34554443 3667777761 1113444444 35655 78899999999999999999988876632 22221 2
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.|++.. -.+|++.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 477 edla~l-R~iPn~~v~~PaD~~E~~~~~~~al~~--~~gP~~irl 518 (663)
T PRK12753 477 EQLASL-RLTPNFSTWRPCDQVEAAVAWKLAIER--HNGPTALIL 518 (663)
T ss_pred HHHHHH-hcCCCCEEEccCCHHHHHHHHHHHHhc--CCCCEEEEe
Confidence 233321 13455443 224778888888888862 279988855
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.29 E-value=10 Score=40.11 Aligned_cols=90 Identities=23% Similarity=0.175 Sum_probs=54.9
Q ss_pred CeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCcceEEEeCCCHHHHHHHH
Q 018037 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQAC 271 (362)
Q Consensus 193 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi~g~~VdG~D~~av~~a~ 271 (362)
.++++..|=|.+| ..-++..|..-+.|||+|+-..... ...... ....+.. +..--...+| .+++++.+.+
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~--~d~~~~~-~~vtk~~~~v--~~~~~~~~~i 154 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTDVAPN--FESLRNY-RHITKWCEQV--TLPDEVPELM 154 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccccCCCC--cchhhhH-hhcceeEEEC--CCHHHHHHHH
Confidence 4555556888877 3355778889999999998543321 111000 0000111 1111122455 4788999999
Q ss_pred HHHHHHhcc--CCCEEEEEEE
Q 018037 272 KFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 272 ~~A~~~ar~--~gP~lIe~~t 290 (362)
.+|+..+++ .||++|++-.
T Consensus 155 ~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 155 RRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHhcCCCceEEEecch
Confidence 999988876 6999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 362 | ||||
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 1e-93 | ||
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-93 | ||
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 5e-93 | ||
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 5e-93 | ||
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 5e-93 | ||
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 7e-88 | ||
| 1w85_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 1e-30 | ||
| 3duf_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 1e-30 | ||
| 1w88_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1( | 2e-30 | ||
| 3dva_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 3e-30 | ||
| 1um9_A | 367 | Branched-chain 2-oxo Acid Dehydrogenase (e1) From T | 3e-28 | ||
| 1dtw_A | 400 | Human Branched-Chain Alpha-Keto Acid Dehydrogenase | 7e-27 | ||
| 2j9f_A | 400 | Human Branched-Chain Alpha-Ketoacid Dehydrogenase- | 1e-26 | ||
| 2bff_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-26 | ||
| 1x7y_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-26 | ||
| 1x7x_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 2e-26 | ||
| 1x7z_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 2e-26 | ||
| 1x7w_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 2e-26 | ||
| 1x80_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 2e-26 | ||
| 2bfe_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 6e-26 | ||
| 2bfb_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 7e-26 | ||
| 1olu_A | 400 | Roles Of His291-Alpha And His146-Beta' In The Reduc | 9e-26 | ||
| 1v16_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 2e-25 | ||
| 2bfc_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 7e-25 | ||
| 1v11_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 7e-25 | ||
| 1v1m_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 2e-24 | ||
| 2bfd_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 3e-24 | ||
| 2bp7_A | 410 | New Crystal Form Of The Pseudomonas Putida Branched | 1e-22 | ||
| 1qs0_A | 407 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 6e-22 |
| >pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
|
| >pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
|
| >pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
|
| >pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 | Back alignment and structure |
|
| >pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 | Back alignment and structure |
|
| >pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 | Back alignment and structure |
|
| >pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 0.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 1e-104 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 2e-90 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 7e-90 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 8e-90 | |
| 3lvg_D | 190 | LCB, clathrin light chain B; SELF assembly, coated | 4e-04 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 6e-04 |
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 | Back alignment and structure |
|---|
Score = 519 bits (1339), Expect = 0.0
Identities = 175/328 (53%), Positives = 227/328 (69%), Gaps = 5/328 (1%)
Query: 34 TTPLTIETSVPFTSHQCE-APSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92
T E H+ E P + T ++ L ++R M T+RRME+ AD LYK K++RG
Sbjct: 6 ANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 64
Query: 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGK 152
FCHL DGQEA +G+EAGI D +ITAYR H RG ++ E+ +EL GRK GC+ GK
Sbjct: 65 FCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGK 124
Query: 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212
GGSMH Y K FYGG+GIVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA
Sbjct: 125 GGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA 182
Query: 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272
N+AALW LP I +CENN YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A +
Sbjct: 183 YNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR 242
Query: 273 FAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331
FA + GP+++E+ TYRYHGH MSDPG +YRTR+EI VR + DPI ++ ++
Sbjct: 243 FAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNS 302
Query: 332 DLATEKELKDIEKEVRKEVDDAIAKAKE 359
+LA+ +ELK+I+ EVRKE++DA A
Sbjct: 303 NLASVEELKEIDVEVRKEIEDAAQFATA 330
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = e-104
Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 8/305 (2%)
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGITK-KDSI 117
++L +R M R ++ L + K F G EA + + I D +
Sbjct: 34 EGEKLRRLYRDMLAARMLDERYTILIRTGKT--SFIAPAAGHEAAQVAIAHAIRPGFDWV 91
Query: 118 ITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIP 177
YRDH L G L E+ +++ K + G+ H K F+ + + +P
Sbjct: 92 FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 151
Query: 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA 237
G A + K + V +GDGA ++G + +N AA+ PA+ + ENN Y +
Sbjct: 152 PAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVD 211
Query: 238 EWRAAKSPSYYKRGD-Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294
SP+ + + +PG VDGMD LA K A E A + GP ++E+ YRY
Sbjct: 212 YRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYG 271
Query: 295 GHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAI 354
HS +D S YR ++E++ R+ +DPI R R+ + A L E+ +D+ +E+R E++ +
Sbjct: 272 PHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGL 330
Query: 355 AKAKE 359
+A+E
Sbjct: 331 KEAEE 335
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 2e-90
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 19/313 (6%)
Query: 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGI 111
E + ++L R+M R ++ + SL + +L GF GQEA I +
Sbjct: 35 EEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL--GFYAPTAGQEASQIASHFAL 92
Query: 112 TKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGI 171
K+D I+ YRD + G L + F G H G + + I
Sbjct: 93 EKEDFILPGYRDVPQIIWHGLPLYQAFLFSRG------HFHGNQIP---EGVNVLPPQII 143
Query: 172 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231
+GAQ G+A K + V GDG +QG +E +N A + PAI V +NN
Sbjct: 144 IGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 203
Query: 232 YGMGTAEWRAAKSPSYYKRGD-Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288
+ + T + + + ++ +PG++VDGMD LAV A K A+E A+ GP ++E
Sbjct: 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIET 263
Query: 289 DTYRYHGHSMS--DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEV 346
+RY H+MS DP + YR+++ + + +DP+ R RK + A L +E+E ++ ++
Sbjct: 264 LCFRYGPHTMSGDDP-TRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQA 321
Query: 347 RKEVDDAIAKAKE 359
++E+ +AI KA E
Sbjct: 322 KEEIKEAIKKADE 334
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 | Back alignment and structure |
|---|
Score = 274 bits (703), Expect = 7e-90
Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 4/308 (1%)
Query: 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112
PS +++L ++ M + M+ + + + Y G+E +G A +
Sbjct: 46 PSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALD 104
Query: 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172
D + R+ + R L ++ G G+ +H+ K+ F +
Sbjct: 105 NTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 164
Query: 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232
QIP G A+A K + V +G+GAA++G N AA + P I C NN Y
Sbjct: 165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY 224
Query: 233 GMGTAEWRAAKSPSYYKRGD-Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
+ T + RG Y + ++VDG D AV A K A+ A+ N P ++E
Sbjct: 225 AISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAM 284
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKE 349
TYR S SD S +R+ DE++ ++ PI R+R +L+ E++ K K+ R++
Sbjct: 285 TYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRK 344
Query: 350 VDDAIAKA 357
V +A +A
Sbjct: 345 VMEAFEQA 352
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 | Back alignment and structure |
|---|
Score = 274 bits (703), Expect = 8e-90
Identities = 81/303 (26%), Positives = 132/303 (43%), Gaps = 8/303 (2%)
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
P+ L R M R + + K+ F G+EA+ G + + D
Sbjct: 72 DPQILRQGMRAMLKTRIFDSRMVVAQRQKKM--SFYMQSLGEEAIGSGQALALNRTDMCF 129
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
YR + R +L+E+ +L+ + G+ + + +++GF+ G + Q
Sbjct: 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQ 189
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
G A A D + A GDGA + AL A ++ P IL NN + + T +
Sbjct: 190 AVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQ 249
Query: 239 WRA-AKSPSYYKRGD-Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294
A +S ++ RG + L+VDG D +AV A ++A E A + GP ++E TYR
Sbjct: 250 AIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG 309
Query: 295 GHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAI 354
HS SD S YR D+ S DPI R+++ ++ +E+E + E V A
Sbjct: 310 PHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 368
Query: 355 AKA 357
+A
Sbjct: 369 KEA 371
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 4e-04
Identities = 9/52 (17%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 315 RQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDD-------AIAKAKE 359
R+E+ +R+++L D A++ ++ ++ +K++++ + K K
Sbjct: 91 REEQR--KRLQEL----DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.2 bits (90), Expect = 6e-04
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 17 LKPLTNSFLLHRPISTDTTP-LTIETSV 43
LK L S L+ D+ P L I+ ++
Sbjct: 22 LKKLQASLKLYAD---DSAPALAIKATM 46
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 100.0 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 100.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 100.0 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 99.98 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.97 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.94 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.93 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.92 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 99.92 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.92 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.92 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.92 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.91 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 99.91 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.9 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.9 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.89 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 99.87 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 99.63 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 99.61 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 99.59 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 99.58 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 99.57 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 99.57 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 99.56 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 99.56 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 99.56 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 99.55 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 99.54 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 99.53 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 99.53 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 99.53 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 99.52 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 99.51 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 99.51 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 99.49 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.46 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 99.42 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.36 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 99.35 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.93 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 92.12 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 91.74 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 90.59 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 89.83 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 89.82 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 89.69 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 89.69 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 89.51 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 89.34 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 88.94 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 88.66 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 88.29 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 88.2 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 87.78 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 87.53 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 87.26 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 86.68 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 86.53 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 86.01 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 85.94 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 85.82 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 85.81 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 85.61 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 85.45 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 85.34 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 85.2 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 85.12 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 85.01 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 84.86 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 83.41 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; | 83.38 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 82.73 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 81.81 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 81.6 |
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-81 Score=616.86 Aligned_cols=326 Identities=54% Similarity=0.948 Sum_probs=311.7
Q ss_pred CcceeeeCCCCcccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC
Q 018037 34 TTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112 (362)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~ 112 (362)
+++.||+++ ||+.|+++. |+..+.+|+|+++++|+.|+++|+||+++..+|++|+|.||+|++.||||+++|++.+|+
T Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~ 84 (365)
T 2ozl_A 6 ANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN 84 (365)
T ss_dssp CSEEEEECC-CCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred ccccccccC-ccccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC
Confidence 445788876 999999986 777889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCC
Q 018037 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (362)
Q Consensus 113 ~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~ 192 (362)
++|+|+++||+|++++++|+++.++|+|++|+.+|+++|+||+||+++. ++++++|+||+++|+|+|+|+|.++++++
T Consensus 85 ~~D~i~~~yR~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~~~--~~~~~~g~~G~~lp~A~G~A~A~~~~~~~ 162 (365)
T 2ozl_A 85 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKD 162 (365)
T ss_dssp TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEehHHHHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCcc--ccCCCcchhhhhhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999764 88999999999999999999999999999
Q ss_pred CeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcCCcceEEEeCCCHHHHHHHHH
Q 018037 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272 (362)
Q Consensus 193 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~gi~g~~VdG~D~~av~~a~~ 272 (362)
++|||++|||++++|.++|+||+|++|+||+||||+||+||++++..+....++|+++++|+|+++|||+|+++|+++++
T Consensus 163 ~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~VdG~D~~av~~a~~ 242 (365)
T 2ozl_A 163 EVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR 242 (365)
T ss_dssp CCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHH
T ss_pred ceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877777778999999999999999999999999999
Q ss_pred HHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 018037 273 FAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVD 351 (362)
Q Consensus 273 ~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~ 351 (362)
+|++++|+ +||+|||+.|||++|||++||+.+||+++|+++|++.+|||.+|+++|+++|+||++++++|+++++++|+
T Consensus 243 ~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 322 (365)
T 2ozl_A 243 FAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIE 322 (365)
T ss_dssp HHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999988899999999998668999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 018037 352 DAIAKAKEGRQ 362 (362)
Q Consensus 352 ~a~~~A~~~p~ 362 (362)
+++++|+++|.
T Consensus 323 ~a~~~a~~~p~ 333 (365)
T 2ozl_A 323 DAAQFATADPE 333 (365)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHhCCC
Confidence 99999999873
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-72 Score=563.65 Aligned_cols=303 Identities=27% Similarity=0.388 Sum_probs=290.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHH
Q 018037 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (362)
Q Consensus 56 ~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~ 135 (362)
.+.+++|+++++|+.|+++|.||+++..+|++|++ +|+|++.||||+++|++.+|+++|+|+++||+|++.|++|+++.
T Consensus 68 ~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~-~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~~~~l~~g~~~~ 146 (407)
T 1qs0_A 68 AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLV 146 (407)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccCcCCCChHHHHHHHHHhcCCCCEEEecccchHHHHhcCCCHH
Confidence 36899999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHH
Q 018037 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (362)
Q Consensus 136 ~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~ 215 (362)
++|+|++|+.++.++|+|+++|++..+.++++++|+||+++|+|+|+|+|.|++++++++||++|||++++|.+||+||+
T Consensus 147 ~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~ 226 (407)
T 1qs0_A 147 EMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTF 226 (407)
T ss_dssp HHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEEcCCccccccccccc-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 216 AALWDLPAILVCENNHYGMGTAEWRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 216 A~~~~LPvIfVv~NN~~gi~t~~~~~~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
|++|+||+||||+||+|+++++..+.. ..++|+++ +||+++++|||+|+++|++++++|++++|+ +||+|||+.||
T Consensus 227 A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 306 (407)
T 1qs0_A 227 AHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTY 306 (407)
T ss_dssp HHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECC
T ss_pred HHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 999999999999999999998877665 46788775 599999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018037 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEG 360 (362)
Q Consensus 292 R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~ 360 (362)
|++|||++|+++.||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++|++.
T Consensus 307 R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~ 374 (407)
T 1qs0_A 307 RAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQY 374 (407)
T ss_dssp CCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888999999999998 59999999999999999999999999999999999999999983
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=543.75 Aligned_cols=296 Identities=29% Similarity=0.472 Sum_probs=276.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHH
Q 018037 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (362)
Q Consensus 56 ~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~ 135 (362)
.+.+|+++++++|+.|+++|+||+++.+++++|++ ||+|++.||||+++|++.+|+++|+|+++||+|++++++|.++.
T Consensus 38 ~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~~~~~~~~G~~~~ 116 (368)
T 1w85_A 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLY 116 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCHHHHHHHHHHhcCCcCEEEecchhHHHHHhcCCCHH
Confidence 46799999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHH
Q 018037 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (362)
Q Consensus 136 ~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~ 215 (362)
.+|+|++|+.+ |++|| ++.++.+++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.++|+||+
T Consensus 117 ~~~~el~G~~~------G~~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~ 187 (368)
T 1w85_A 117 QAFLFSRGHFH------GNQIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINF 187 (368)
T ss_dssp HHHHHHHTCGG------GGCCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHH
T ss_pred HHHHHHCCCCC------CCCCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHH
Confidence 99999999875 45677 4668999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEEcCCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 216 A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
|+.|+||+||||+||+|+++++.......+++.++ +||+++++|||+|+++|++++++|++++|+ +||+|||+.|||
T Consensus 188 A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r 267 (368)
T 1w85_A 188 AGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 267 (368)
T ss_dssp HHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred HHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 99999999999999999999988777667788875 499999999999999999999999999998 899999999999
Q ss_pred CCCCC-CCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 293 YHGHS-MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 293 ~~GHs-~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
++||| ++|+++.||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.
T Consensus 268 ~~gHs~~~Ddp~~yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~ 337 (368)
T 1w85_A 268 YGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPK 337 (368)
T ss_dssp SSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cCCCCCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999 999888999999999998 4999999999999999999999999999999999999999999873
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-70 Score=548.17 Aligned_cols=306 Identities=25% Similarity=0.394 Sum_probs=273.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCH
Q 018037 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134 (362)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~ 134 (362)
..+.+++|+++++|+.|+++|.||+++..++++|+|+ |+|++.||||+++|+..+|+++|+|+++||+|++++++|+++
T Consensus 48 ~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~-~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~ 126 (400)
T 2bfd_A 48 EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS-FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPL 126 (400)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCH
Confidence 3468999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHH
Q 018037 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (362)
Q Consensus 135 ~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn 214 (362)
.++|++++|+.+++++|+++++|++.++.++++++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.+||+||
T Consensus 127 ~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~ 206 (400)
T 2bfd_A 127 ELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFN 206 (400)
T ss_dssp HHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEEEcCCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 215 ~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
+|+.|+||+||||+||+|+++++.......++++++ +||+++++|||+|+++|++++++|++++|+ ++|+|||+.||
T Consensus 207 ~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~ty 286 (400)
T 2bfd_A 207 FAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTY 286 (400)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 999999999999999999999988777767888875 499999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 292 R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
|++|||++|+++.||+++|++.|++.+|||.+|+++|++.|+||++++++|+++++++|++++++|++.|
T Consensus 287 R~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 356 (400)
T 2bfd_A 287 RIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKP 356 (400)
T ss_dssp CCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred eeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999998888999999999985568999999999999999999999999999999999999998776
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=514.00 Aligned_cols=304 Identities=28% Similarity=0.469 Sum_probs=291.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCC-CEEEcCchhHHHHHHcCCCH
Q 018037 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGTL 134 (362)
Q Consensus 56 ~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~-D~v~~~yR~h~~~l~rG~~~ 134 (362)
.+.+|+++++++|+.|+++|.||+++..++++|++ ||+|++.|||++++|+..+|+++ |+++++||+|++.+.+|.++
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~-g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~~~~~~~~G~~~ 108 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPL 108 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-cCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHHHHHHHHcCCCH
Confidence 46799999999999999999999999999999998 89999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHH
Q 018037 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (362)
Q Consensus 135 ~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn 214 (362)
.++|++++|+.+|++.|+++++|+++++.++++++|++|+++|.|+|+|+|.|+.+++++|||++|||++++|.++|+||
T Consensus 109 ~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~ 188 (367)
T 1umd_A 109 KELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGIN 188 (367)
T ss_dssp HHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEEEcCCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 215 ~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
+|+.|++|+||||+||+|+++++.......++|..+ +||+++++|||+|+++|++++++|++++++ +||+|||+.||
T Consensus 189 ~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~ 268 (367)
T 1umd_A 189 FAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVY 268 (367)
T ss_dssp HHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred HHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 999999999999999999999887766666788875 499999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 292 R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
|.+|||++|+++.||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++|+++|
T Consensus 269 r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~ 337 (367)
T 1umd_A 269 RYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAG 337 (367)
T ss_dssp CCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCCccccCCHHHHHHHH-cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999888999999999998 499999999999999999999999999999999999999999887
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=520.17 Aligned_cols=320 Identities=20% Similarity=0.228 Sum_probs=276.9
Q ss_pred CCcceeeeCCC-------CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHH
Q 018037 33 DTTPLTIETSV-------PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (362)
Q Consensus 33 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (362)
.|.++-+|.-- +|.++++|.+. +.+|+|+++++|+.|+++|.||+++..+|++|++.|+ .|||++++
T Consensus 84 yc~~ig~e~~~i~~~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~----~G~Ea~~~ 157 (868)
T 2yic_A 84 YCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIP 157 (868)
T ss_dssp HSSSEEEECTTCSCHHHHHHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHH
T ss_pred hcCCCCcceeccCChHHhHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHH
Confidence 47777777421 48999999754 7899999999999999999999999999999888764 99999999
Q ss_pred HHHhc------CCCCCEEEc-CchhHHHHHH--cCCCHHHHHHHHhCCCCCC-CCC-CCCccCCccCC------------
Q 018037 106 GMEAG------ITKKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SHG-KGGSMHFYKKD------------ 162 (362)
Q Consensus 106 g~~~~------l~~~D~v~~-~yR~h~~~l~--rG~~~~~~lael~g~~~g~-~~G-rggs~H~~~~~------------ 162 (362)
|+..+ ++++|+|++ +||+|+++|+ +|+|+.++|+|++|+.+++ +.| +++++|++...
T Consensus 158 g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~ 237 (868)
T 2yic_A 158 MMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIE 237 (868)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEE
T ss_pred HHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCccee
Confidence 98876 458999998 8999999999 9999999999999998876 444 44479987532
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCccc-ccchHHHHHHHHHhCCCC---eEEEEE
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCE 228 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LP---vIfVv~ 228 (362)
.++.+++|+||+++|+|+|+|+|.|+++ .+.++||++|||++ +||.+||+||+|+.|+|| +||||+
T Consensus 238 l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~ 317 (868)
T 2yic_A 238 VSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVV 317 (868)
T ss_dssp EEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEE
T ss_pred eeecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEE
Confidence 2355778999999999999999999864 56799999999995 999999999999999999 999999
Q ss_pred cCCcccccccccccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCC
Q 018037 229 NNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTY 305 (362)
Q Consensus 229 NN~~gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~Y 305 (362)
||+||++++.......+++.. ++||+|+++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||++|++ .|
T Consensus 318 NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p-~~ 396 (868)
T 2yic_A 318 NNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDP-SM 396 (868)
T ss_dssp ECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCG-GG
T ss_pred cCCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCccccc-cc
Confidence 999999997654444444544 4599999999999999999999999999999 9999999999999999999998 58
Q ss_pred CChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018037 306 RTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359 (362)
Q Consensus 306 R~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~ 359 (362)
|+++|++.|++.+||+.+|+++|+++|++|++++++|+++++++|++++++|++
T Consensus 397 ~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~ 450 (868)
T 2yic_A 397 TQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE 450 (868)
T ss_dssp TCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999878999999999999999999999999999999999999999876
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-60 Score=521.42 Aligned_cols=320 Identities=20% Similarity=0.233 Sum_probs=276.1
Q ss_pred CCcceeeeCCC-------CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHH
Q 018037 33 DTTPLTIETSV-------PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (362)
Q Consensus 33 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (362)
.|.++-+|.-- +|.++++|.+. +.+|+|+++++|+.|+++|.||+++..+|++|++.|+ .|||++++
T Consensus 329 yc~~ig~e~~~i~~~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~----~GqEa~~~ 402 (1113)
T 2xt6_A 329 YCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIP 402 (1113)
T ss_dssp HSSSEEEECTTCSCHHHHHHHHHHHHSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHH
T ss_pred ccCCCCcceeccCCHHHhHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHH
Confidence 57777777421 48999999754 7899999999999999999999999999999988775 99999999
Q ss_pred HHHhc------CCCCCEEEc-CchhHHHHHH--cCCCHHHHHHHHhCCCCCC-CCC-CCCccCCccCC------------
Q 018037 106 GMEAG------ITKKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SHG-KGGSMHFYKKD------------ 162 (362)
Q Consensus 106 g~~~~------l~~~D~v~~-~yR~h~~~l~--rG~~~~~~lael~g~~~g~-~~G-rggs~H~~~~~------------ 162 (362)
|++.+ ++++|+|++ +||+|+++|+ +|+++.++|+|++|+.+++ +.| +++++|++...
T Consensus 403 g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~ 482 (1113)
T 2xt6_A 403 MMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIE 482 (1113)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEE
T ss_pred HHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCccee
Confidence 98777 458999998 8999999999 9999999999999999876 444 44479987532
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEE
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCE 228 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~ 228 (362)
.++.+++|+||+++|+|+|+|+|.|+.+ .+.++||++|||+ ++||.+||+||+|+.|+|| +||||+
T Consensus 483 l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~ 562 (1113)
T 2xt6_A 483 VSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVV 562 (1113)
T ss_dssp EEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEE
T ss_pred eeecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEE
Confidence 2355778999999999999999999865 5789999999999 5999999999999999999 999999
Q ss_pred cCCcccccccccccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCC
Q 018037 229 NNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTY 305 (362)
Q Consensus 229 NN~~gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~Y 305 (362)
||+|||+++.......+++.. ++||+|+++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||++|++ .|
T Consensus 563 NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p-~~ 641 (1113)
T 2xt6_A 563 NNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDP-SM 641 (1113)
T ss_dssp ECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCG-GG
T ss_pred eCCcccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCcc-cc
Confidence 999999997654443334444 4699999999999999999999999999999 9999999999999999999998 58
Q ss_pred CChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018037 306 RTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359 (362)
Q Consensus 306 R~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~ 359 (362)
|+++|++.|++.+||+.+|+++|+++|++|++++++|+++++++|++++++|++
T Consensus 642 ~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~ 695 (1113)
T 2xt6_A 642 TQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE 695 (1113)
T ss_dssp TCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999878999999999999999999999999999999999999999986
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-58 Score=499.84 Aligned_cols=308 Identities=16% Similarity=0.199 Sum_probs=252.9
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC------CCCEEE
Q 018037 45 FTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSII 118 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~------~~D~v~ 118 (362)
|...++|.+ .+.+|+|+++++|+.|+++|.||+++..+|++|+..| ..|||++.+|+..+++ ++|+|+
T Consensus 183 w~~~~~e~~--~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~----~~G~Ea~i~g~~~~~~~a~~~g~~D~v~ 256 (933)
T 2jgd_A 183 WIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS----LEGGDALIPMLKEMIRHAGNSGTREVVL 256 (933)
T ss_dssp HHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC----CTTCTTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----CCCchHHHHHHHHHHHHHhhCCCCCEEe
Confidence 667777754 6689999999999999999999999999999987533 5899999999766665 699999
Q ss_pred c-CchhHHHHHH--cCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCC----------CcccCCccccchhHHHHHHHHH
Q 018037 119 T-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS----------GFYGGHGIVGAQIPLGCGLAFA 185 (362)
Q Consensus 119 ~-~yR~h~~~l~--rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~----------~~~~~~g~lG~~~p~A~G~A~A 185 (362)
+ +||+|+++|+ +|+|+.++|+|++|+.+++++|+++++|++.... ++.+++|++|+++|+|+|+|+|
T Consensus 257 g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A 336 (933)
T 2jgd_A 257 GMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRA 336 (933)
T ss_dssp ECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHH
Confidence 6 8999999999 9999999999999999888767777899875432 2357889999999999999999
Q ss_pred HhhCC-----CCCeEEEEeCCccc-ccchHHHHHHHHHhCCCC---eEEEEEcCCccccc-ccccccCCchHhhh--cCC
Q 018037 186 QKYSK-----DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGT-AEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 186 ~k~~~-----~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t-~~~~~~~~~~~~~~--g~g 253 (362)
.|+++ .+.++||++|||++ +||.+||+||+|+.|++| +||||+||+|+|++ +...+...+++..+ ++|
T Consensus 337 ~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~~~a~a~g 416 (933)
T 2jgd_A 337 RLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQ 416 (933)
T ss_dssp HHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGGGGGGTTT
T ss_pred HHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHHHHHHHcC
Confidence 99884 67899999999997 999999999999999999 99999999999999 77765555556554 599
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcC
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g 332 (362)
+|+++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||++|++ .||+++|++.|++.+||+.+|+++|+++|
T Consensus 417 ~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~-~yr~~~e~~~~~~~~dPi~~~~~~Li~~G 495 (933)
T 2jgd_A 417 APIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEP-SATQPLMYQKIKKHPTPRKIYADKLEQEK 495 (933)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHHHHHHHHHTTT
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccch-hhCCHHHHHHHHccCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999 9999999999999999999987 59999999999866799999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018037 333 LATEKELKDIEKEVRKEVDDAIAKAKE 359 (362)
Q Consensus 333 ~~t~~el~~i~~e~~~~v~~a~~~A~~ 359 (362)
++|++++++|+++++++|+++++.|++
T Consensus 496 v~t~~~~~~i~~~~~~~v~~a~~~A~~ 522 (933)
T 2jgd_A 496 VATLEDATEMVNLYRDALDAGDCVVAE 522 (933)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988876
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.3e-32 Score=282.85 Aligned_cols=233 Identities=18% Similarity=0.163 Sum_probs=176.5
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEE--cCch
Q 018037 46 TSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSII--TAYR 122 (362)
Q Consensus 46 ~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~--~~yR 122 (362)
...+++.|.+...++.++|.++|+.| |.+...+ . ++..|+++++.|++++.+++...++ +.|+++ ..||
T Consensus 10 ~l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~---~--~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~ 81 (621)
T 2o1s_A 10 TLALVDSTQELRLLPKESLPKLCDEL---RRYLLDS---V--SRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQ 81 (621)
T ss_dssp TGGGCSSHHHHTTSCGGGHHHHHHHH---HHHHHHH---S--CGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTT
T ss_pred hhhhcCChHHhhhCCHHHHHHHHHHH---HHHHHHH---H--hhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchH
Confidence 45678888888899999999999988 6654432 2 2357999999999999999999999 899998 6899
Q ss_pred hHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccC-C-CCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeC
Q 018037 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKK-D-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (362)
Q Consensus 123 ~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~-~-~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~G 200 (362)
++++.+.+|. . .++.. .+..+|.+++.++ + .+...++|++|+++|+|+|+|+|.++++++++|||++|
T Consensus 82 ~y~~~~l~G~-~----~~~~~-----~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~G 151 (621)
T 2o1s_A 82 AYPHKILTGR-R----DKIGT-----IRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIG 151 (621)
T ss_dssp CHHHHHTTTT-G----GGGGG-----TTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEE
T ss_pred HHHHHHHhCC-H----hhhhc-----ccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 9999998886 1 11210 1112222222221 1 12334689999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCC----------------------------------ch
Q 018037 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKS----------------------------------PS 246 (362)
Q Consensus 201 DGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~----------------------------------~~ 246 (362)
||++++|.+||+||+|+.|++|+||||+||+|+++++...+... ++
T Consensus 152 DG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~ 231 (621)
T 2o1s_A 152 DGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEE 231 (621)
T ss_dssp TTGGGSHHHHHHHHHHHHHCCSEEEEEEECC-------------------------------------------------
T ss_pred hhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999999999999988765432100 01
Q ss_pred H-------hh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 247 Y-------YK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 247 ~-------~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
| .. +++|++++ +|||+|++++.+++++|++. ++|+|||+.|+|.+||+..
T Consensus 232 ~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~---~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 232 HIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDL---KGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp -------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHS---CSEEEEEEECCCTTCCCCC
T ss_pred HhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHc---CCCEEEEEEEecccCCChh
Confidence 1 12 45888888 99999999999999988764 8999999999999999854
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=279.50 Aligned_cols=232 Identities=17% Similarity=0.140 Sum_probs=179.5
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEcCch
Q 018037 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIITAYR 122 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~~yR 122 (362)
|+ ..+++.|.+...++.++|.++|+.| |++.. +++. +..|+++++.|+-.+.+++...++ +.|+++.+ |
T Consensus 11 ~~-l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~~---~~~~--~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~ 80 (629)
T 2o1x_A 11 PL-LDQIHGPKDLKRLSREQLPALTEEL---RGEIV---RVCS--RGGLHLASSLGAVDIITALHYVLDSPRDRILFD-V 80 (629)
T ss_dssp TT-GGGCSSHHHHTTSCGGGHHHHHHHH---HHHHH---HHHT--TSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-S
T ss_pred ch-hhhCCChhhhhhCCHHHHHHHHHHH---HHHHH---HHHH--hcCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-C
Confidence 53 5678888888899999999999988 65433 3333 257999999999777777766678 89999998 9
Q ss_pred hHH---HHHHcCC-CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEE
Q 018037 123 DHC---TFLGRGG-TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFAL 198 (362)
Q Consensus 123 ~h~---~~l~rG~-~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~ 198 (362)
+|+ +.+.+|. +....++++.|. +|++.++. |+ ++.+++|++|+++|+|+|+|+|.|+++++++|||+
T Consensus 81 GH~~y~~~~l~G~~~~~~~~r~~~g~-~G~p~~~~-s~-------~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v 151 (629)
T 2o1x_A 81 GHQAYAHKILTGRRDQMADIKKEGGI-SGFTKVSE-SE-------HDAITVGHASTSLTNALGMALARDAQGKDFHVAAV 151 (629)
T ss_dssp STTCHHHHHTTTTGGGGGGTTSTTSC-CSSCCGGG-CT-------TCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred chHHHHHHHHhCcHhHHhCcccCCCC-CCCCCCCC-CC-------CCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEE
Confidence 996 5555665 333334444442 24333321 33 24567899999999999999999999999999999
Q ss_pred eCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccC--------------------------C--------
Q 018037 199 YGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK--------------------------S-------- 244 (362)
Q Consensus 199 ~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~--------------------------~-------- 244 (362)
+|||++++|.+||+||+|+.|++|+||||+||+|+++++...+.. .
T Consensus 152 ~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~ 231 (629)
T 2o1x_A 152 IGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSR 231 (629)
T ss_dssp EETTGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC---------------------------------
T ss_pred EchhhhhccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999999999999999999998765531100 0
Q ss_pred -chHh---------h--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018037 245 -PSYY---------K--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (362)
Q Consensus 245 -~~~~---------~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs 297 (362)
+++. . .+||++++ +|||+|++++.+++++|++. ++|+||++.|++.+||+
T Consensus 232 ~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~---~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 232 AKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL---DGPTILHIVTTKGKGLS 294 (629)
T ss_dssp ------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS---SSEEEEEEECCTTTTCH
T ss_pred HHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc---CCCEEEEEEEecCCCCC
Confidence 1322 3 35899999 99999999999988887542 89999999999999997
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-27 Score=246.35 Aligned_cols=161 Identities=22% Similarity=0.212 Sum_probs=138.4
Q ss_pred CCccCCCCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEE
Q 018037 157 HFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AIL 225 (362)
Q Consensus 157 H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIf 225 (362)
|......++..++|++|+++|.|+|+|+|.++.+ .+++|||++|||++++|.+||+|++|+.|+|| +|+
T Consensus 103 hp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~ 182 (680)
T 1gpu_A 103 HPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIA 182 (680)
T ss_dssp SCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEE
T ss_pred CCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEE
Confidence 5433345788899999999999999999988654 37899999999999999999999999999999 899
Q ss_pred EEEcCCcccccccccccCCchHhhh--cCCcceE-EEeCC-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC
Q 018037 226 VCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGM-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP 301 (362)
Q Consensus 226 Vv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~g~-~VdG~-D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~ 301 (362)
||+||+|+|+++..... .+++.++ +||++++ +|||| |++++++++++|++ ..++|+||++.|+|++||++.|+
T Consensus 183 i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~--~~~~P~lI~~~T~kg~G~~~~~~ 259 (680)
T 1gpu_A 183 IYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL--SKDKPTLIKMTTTIGYGSLHAGS 259 (680)
T ss_dssp EEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH--CTTSCEEEEEECCTTTTSTTTTS
T ss_pred EEECCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH--CCCCCEEEEEEeecccccccCCC
Confidence 99999999988776543 5678775 5999999 99999 99999999999886 12899999999999999998775
Q ss_pred C---CCCCChhhHHhHhhcCCHH
Q 018037 302 G---STYRTRDEISGVRQERDPI 321 (362)
Q Consensus 302 ~---~~YR~~~e~~~~~~~~DPi 321 (362)
. ..||+++|+++|++ ++++
T Consensus 260 ~~~H~~~~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 260 HSVHGAPLKADDVKQLKS-KFGF 281 (680)
T ss_dssp GGGSSSCCCHHHHHHHHH-HTTC
T ss_pred CccCCCCCCHHHHHHHHH-HcCC
Confidence 3 57999999999974 4443
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=235.27 Aligned_cols=154 Identities=22% Similarity=0.243 Sum_probs=134.3
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|+++|.|+|+|+|.++.+ .+++|||++|||++++|.+||+|++|+.++|| +||||+||+
T Consensus 111 ~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 190 (651)
T 2e6k_A 111 PGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNR 190 (651)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred CCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCC
Confidence 3678899999999999999999998654 68899999999999999999999999999999 899999999
Q ss_pred cccccccccccCCchHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCC---
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTY--- 305 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~Y--- 305 (362)
|+++++..... .+++.++ +||++++ +|||+|++++++++++|++ .++|+||++.|+|.+||++.|+ ..|
T Consensus 191 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~P~lI~~~t~kg~G~~~~~~-~~~H~~ 265 (651)
T 2e6k_A 191 ISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL---DERPTLIAVRSHIGFGSPKQDS-AKAHGE 265 (651)
T ss_dssp EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH---SSSCEEEEEECCTTTTSTTTTS-GGGTSS
T ss_pred ccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH---CCCCEEEEEEeEeccccccccc-cccccc
Confidence 99988876654 5678774 5999999 9999999999999999876 3899999999999999995554 345
Q ss_pred -CChhhHHhHhhcCCHHH
Q 018037 306 -RTRDEISGVRQERDPIE 322 (362)
Q Consensus 306 -R~~~e~~~~~~~~DPi~ 322 (362)
++++|+++|+ +++|+.
T Consensus 266 ~~~~~e~~~~~-~~~~~~ 282 (651)
T 2e6k_A 266 PLGPEAVEATR-RNLGWP 282 (651)
T ss_dssp CCHHHHHHHHH-HHHTCC
T ss_pred CCCHHHHHHHH-HHcCCC
Confidence 6789999997 466653
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=227.49 Aligned_cols=151 Identities=23% Similarity=0.240 Sum_probs=132.0
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|+++|.|+|+|+|.++.+ .+++|||++|||++++|.+||+|++|+.++|| +|+||+||+
T Consensus 107 ~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 186 (669)
T 2r8o_A 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (669)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 3678899999999999999999988653 37899999999999999999999999999999 889999999
Q ss_pred cccccccccccCCchHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC-CCCC---CC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM-SDPG---ST 304 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~-~D~~---~~ 304 (362)
|+|+.+..... .+++.++ +||++++ +|||+|++++++++++|++ ..++|+||++.|+|..||+. .|+. ..
T Consensus 187 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~ 263 (669)
T 2r8o_A 187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA--VTDKPSLLMCKTIIGFGSPNKAGTHDSHGA 263 (669)
T ss_dssp EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--CCSSCEEEEEECCTTTTCTTTTTSGGGTSS
T ss_pred cEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh--cCCCCEEEEEEeEeccCcCCcCCCCcccCC
Confidence 99988776543 5677774 5999999 9999999999999999886 13899999999999999994 4443 56
Q ss_pred CCChhhHHhHhh
Q 018037 305 YRTRDEISGVRQ 316 (362)
Q Consensus 305 YR~~~e~~~~~~ 316 (362)
||+++|+++|++
T Consensus 264 ~~~~ee~~~~~~ 275 (669)
T 2r8o_A 264 PLGDAEIALTRE 275 (669)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999999874
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=227.15 Aligned_cols=149 Identities=19% Similarity=0.214 Sum_probs=126.5
Q ss_pred CcccCCccccchhHHHHHHHHHHhhC-------------CCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYS-------------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCEN 229 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~-------------~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~N 229 (362)
++..++|++|+++|.|+|+|+|.|+. +.+++|+|++|||++++|++||++|+|+.|+|| +|+||+|
T Consensus 127 gv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~ 206 (700)
T 3rim_A 127 GVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDR 206 (700)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEEC
Confidence 67788999999999999999999974 568899999999999999999999999999998 8999999
Q ss_pred CCcccccccccccCCchHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC---
Q 018037 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS--- 303 (362)
Q Consensus 230 N~~gi~t~~~~~~~~~~~~~~--g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~--- 303 (362)
|+|+|+++..... ..++.++ +||+++++| ||||+++|++|+++|.+ ..++|+||+++|+|++||+......
T Consensus 207 N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~--~~~~P~lI~~~T~kG~G~~~~e~~~~~H 283 (700)
T 3rim_A 207 NQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA--VTDRPSFIALRTVIGYPAPNLMDTGKAH 283 (700)
T ss_dssp CSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--CCSSCEEEEEECCTTTTCTTTTTSHHHH
T ss_pred CCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH--cCCCCEEEEEEEEeeecCCccCCCcccc
Confidence 9999998877543 5677775 599999999 99999999999999876 1389999999999999998654321
Q ss_pred -CCCChhhHHhHh
Q 018037 304 -TYRTRDEISGVR 315 (362)
Q Consensus 304 -~YR~~~e~~~~~ 315 (362)
.-.+++|++.++
T Consensus 284 g~~~~~e~~~~~~ 296 (700)
T 3rim_A 284 GAALGDDEVAAVK 296 (700)
T ss_dssp HSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 123556666543
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=222.16 Aligned_cols=142 Identities=23% Similarity=0.321 Sum_probs=119.1
Q ss_pred cCCccCCCCcccCCccccchhHHHHHHHHHHhhCCC-CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcc
Q 018037 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYG 233 (362)
Q Consensus 156 ~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~-~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~g 233 (362)
.|......++..++|++|+++|+|+|+|+|.++.+. ++.|||++|||++++|.+||+||+|+.|+|| +|+|++||+|+
T Consensus 107 ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~ 186 (616)
T 3mos_A 107 GHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLG 186 (616)
T ss_dssp SSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBC
T ss_pred CCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCC
Confidence 344322334556899999999999999999986555 6899999999999999999999999999999 67899999999
Q ss_pred cccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC
Q 018037 234 MGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG 302 (362)
Q Consensus 234 i~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~ 302 (362)
++.+.......++|.++ +||+++++|||+|++++.++++++ .++|+||++.|+|++||+..+++
T Consensus 187 i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~-----~~~P~lI~v~T~kg~G~~~~e~~ 252 (616)
T 3mos_A 187 QSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA-----KHQPTAIIAKTFKGRGITGVEDK 252 (616)
T ss_dssp SSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC-----CSSCEEEEEECCTTTTSTTTTTC
T ss_pred CcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc-----CCCCEEEEEEEecccccccccCc
Confidence 98877665545677764 599999999999999999888543 38999999999999999876544
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=220.01 Aligned_cols=150 Identities=21% Similarity=0.231 Sum_probs=131.7
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++..++|+||+++|.|+|+|+|.++.+ .+++|||++|||++++|.+||++++|+.|+|| +|+||+||+|
T Consensus 110 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~ 189 (673)
T 1r9j_A 110 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI 189 (673)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred CeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC
Confidence 677889999999999999999998754 58899999999999999999999999999999 8999999999
Q ss_pred ccccccccccCCchHhhh--cCCcceE-EEeC-CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC---CCCC
Q 018037 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDG-MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP---GSTY 305 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~~--g~gi~g~-~VdG-~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~---~~~Y 305 (362)
+|+++..... ..++.++ +||++++ +||| +|++++++|+++|++ ..++|+||+++|+|++||++.|. +..+
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~--~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~ 266 (673)
T 1r9j_A 190 SIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA--TKGKPKMIVQTTTIGFGSSKQGTEKVHGAP 266 (673)
T ss_dssp CSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH--CCSSCEEEEEECCTTTTSTTTTSGGGTSSC
T ss_pred ccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH--cCCCCEEEEEecccccccccCCCcccccCC
Confidence 9988877665 5678774 5999999 9999 999999999999876 13899999999999999996554 2346
Q ss_pred CChhhHHhHhh
Q 018037 306 RTRDEISGVRQ 316 (362)
Q Consensus 306 R~~~e~~~~~~ 316 (362)
++++|++.|++
T Consensus 267 ~~~ee~~~~~~ 277 (673)
T 1r9j_A 267 LGEEDIANIKA 277 (673)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88999988864
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=222.84 Aligned_cols=246 Identities=20% Similarity=0.185 Sum_probs=168.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHH---hcCC-------CCCEEE-c-Cc
Q 018037 54 SRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGME---AGIT-------KKDSII-T-AY 121 (362)
Q Consensus 54 ~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~---~~l~-------~~D~v~-~-~y 121 (362)
-....++.++|.++ ...+|.+-..+.. +.+ .|+.-.+.|.--+.+.+. ...+ +.|.++ + .|
T Consensus 6 ~~~~~l~~~~l~~~---a~~iR~~~~~~v~--~a~--~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH 78 (675)
T 1itz_A 6 LQGKAATGELLEKS---VNTIRFLAIDAVE--KAN--SGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGH 78 (675)
T ss_dssp ----CCCHHHHHHH---HHHHHHHHHHHHH--HHT--CSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGG
T ss_pred hccCCCCHHHHHHH---HHHHHHHHHHHHH--HcC--CCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcc
Confidence 34567888988864 4556765443332 322 244334666655555554 2333 246654 4 34
Q ss_pred hh---HHHHHHcCC---CHHHHHHHHhCCCCCCCCCCCCccCCcc-CCCCcccCCccccchhHHHHHHHHHHhhCC----
Q 018037 122 RD---HCTFLGRGG---TLLEVFSELMGRKDGCSHGKGGSMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKYSK---- 190 (362)
Q Consensus 122 R~---h~~~l~rG~---~~~~~lael~g~~~g~~~Grggs~H~~~-~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~---- 190 (362)
-+ +.+.+..|. +.+++ .. +.+.. ++ -+.|.-. .-.++..++|+||+++|+|+|+|+|.++.+
T Consensus 79 ~~~~lYa~l~l~G~~~~~~~~l-~~-~r~~~----~~-~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n 151 (675)
T 1itz_A 79 GCMLQYALLHLAGYDSVKEEDL-KQ-FRQWG----SR-TPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFN 151 (675)
T ss_dssp GHHHHHHHHHHHTCTTCCHHHH-TT-TTSTT----CS-SCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCCCCHHHH-Hh-cccCC----CC-CCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhccccc
Confidence 44 333344454 22221 11 11111 11 0123321 123677889999999999999999998765
Q ss_pred ------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccCCchHhhh--cCCcceE-EEe
Q 018037 191 ------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGL-KVD 260 (362)
Q Consensus 191 ------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~g~-~Vd 260 (362)
++++|||++|||++++|.+||+|++|+.++|| +|+||+||+|+|+.+..... .+++..+ +||++++ +||
T Consensus 152 ~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vd 230 (675)
T 1itz_A 152 KPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKN 230 (675)
T ss_dssp BTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESC
T ss_pred ccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEec
Confidence 68899999999999999999999999999995 89999999999988776644 6778774 5999999 999
Q ss_pred CC-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC----CCCChhhHHhHhh
Q 018037 261 GM-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS----TYRTRDEISGVRQ 316 (362)
Q Consensus 261 G~-D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~----~YR~~~e~~~~~~ 316 (362)
|+ |++++.+++++|++. .++|+||+++|+|.+||+...+.. .+.+++|++++++
T Consensus 231 G~~d~~~l~~al~~a~~~--~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~ 289 (675)
T 1itz_A 231 GNTGYDDIRAAIKEAKAV--TDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQ 289 (675)
T ss_dssp TTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--CCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHH
Confidence 99 999999999998761 389999999999999998643321 3467788777653
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=217.09 Aligned_cols=198 Identities=19% Similarity=0.217 Sum_probs=146.3
Q ss_pred cccccCcchHHHHHHHHhcCC---------CCCEEEc--Cchh---HHHHHHcCC--CHHHHHHHHhCCCCCCCCCCCCc
Q 018037 92 GFCHLYDGQEAVAIGMEAGIT---------KKDSIIT--AYRD---HCTFLGRGG--TLLEVFSELMGRKDGCSHGKGGS 155 (362)
Q Consensus 92 gf~h~~~GqEa~~vg~~~~l~---------~~D~v~~--~yR~---h~~~l~rG~--~~~~~lael~g~~~g~~~Grggs 155 (362)
|+.-.+.|.--+.+.+...|+ +.|.++. .|-+ ..+....|. +.+++ .. +.+..+.+ +
T Consensus 27 GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l-~~-~r~~~s~~-----~ 99 (632)
T 3l84_A 27 GHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDL-KN-FRQLHSKT-----P 99 (632)
T ss_dssp SCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHHHH-TT-TTCTTCSS-----C
T ss_pred CCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHHHH-HH-HhcCCCCC-----C
Confidence 433336666666666666665 4687654 3544 333344454 34432 11 11111111 1
Q ss_pred cCCccCCCCcccCCccccchhHHHHHHHHHHhhCCC-------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEE
Q 018037 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD-------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVC 227 (362)
Q Consensus 156 ~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~-------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv 227 (362)
.|.-....++..++|++|+++|+|+|+|+|.++.+. ++.|||++|||++++|.+||+|++|+.|+|| +|+|+
T Consensus 100 ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~ 179 (632)
T 3l84_A 100 GHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIY 179 (632)
T ss_dssp SSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEE
T ss_pred CCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEE
Confidence 233222236778899999999999999999987643 8899999999999999999999999999998 78999
Q ss_pred EcCCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCC
Q 018037 228 ENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300 (362)
Q Consensus 228 ~NN~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D 300 (362)
+||+|+|+.+..... .+++.++ +||+++++|||||++++.+++++|++ .++|+||+++|+|.+||+...
T Consensus 180 nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~---~~~P~lI~v~T~kG~G~~~~e 250 (632)
T 3l84_A 180 DSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAKK---STKPCLIIAKTTIAKGAGELE 250 (632)
T ss_dssp EECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHT---CSSCEEEEEECCTTTTCGGGT
T ss_pred ECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHh---CCCCEEEEEeeEeeecCCCCC
Confidence 999999988776543 5677774 59999999999999999998888764 289999999999999998543
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=224.73 Aligned_cols=266 Identities=15% Similarity=0.049 Sum_probs=172.3
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hccccccccccCcchHHHHHH-HHhcCC------CC
Q 018037 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLY--KAKLVRGFCHLYDGQEAVAIG-MEAGIT------KK 114 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~--~~g~i~gf~h~~~GqEa~~vg-~~~~l~------~~ 114 (362)
|| ..+|..|.+.......+|.+-+ ...+|.+-..+...- +.+++.|+.-.+.|.--+.+. ....++ +.
T Consensus 58 ~~-l~~i~~~~~~~~p~d~~l~~~l--a~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~ 134 (886)
T 2qtc_A 58 NY-INTIPVEEQPEYPGNLELERRI--RSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGG 134 (886)
T ss_dssp CS-SCSSCGGGCCCCCSCHHHHHHH--HHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCC
T ss_pred ch-hhhCCCccccCCCchHHHHHHH--HHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 54 5666555555555555665333 334555433332221 123455655556665554443 344467 57
Q ss_pred CEEEcC-chh---HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhh--
Q 018037 115 DSIITA-YRD---HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKY-- 188 (362)
Q Consensus 115 D~v~~~-yR~---h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~-- 188 (362)
|+|+.. |-+ +++.+..|.-..+-|..+ - ..+...|-.+..|......++...+|++|.+++.|+|+|+|.|+
T Consensus 135 D~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~f-R-q~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~ 212 (886)
T 2qtc_A 135 DLVYFQGHISPGVYARAFLEGRLTQEQLDNF-R-QEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLE 212 (886)
T ss_dssp CEEECCGGGHHHHHHHHHHTTSSCHHHHTTB-T-CCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcchhHHHHHHHHHHhCCCCHHHHHhc-c-CCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhc
Confidence 877774 444 333455565322222221 1 11111121121221111113667899999999999999999998
Q ss_pred -----CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCccccccccccc-CCchHhh--hcCCcceEEE
Q 018037 189 -----SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA-KSPSYYK--RGDYVPGLKV 259 (362)
Q Consensus 189 -----~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~-~~~~~~~--~g~gi~g~~V 259 (362)
++.++.|||++|||++++|++|||||+|+.++|| +||||+||+++++.+..... ...++.. +++|++.++|
T Consensus 213 ~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v 292 (886)
T 2qtc_A 213 HRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKV 292 (886)
T ss_dssp HTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEE
Confidence 7889999999999999999999999999999997 89999999999988765421 2234554 3588888887
Q ss_pred ---------------------------------------------------------------------eCCCHHHHHHH
Q 018037 260 ---------------------------------------------------------------------DGMDALAVKQA 270 (362)
Q Consensus 260 ---------------------------------------------------------------------dG~D~~av~~a 270 (362)
||||+.+|++|
T Consensus 293 ~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a 372 (886)
T 2qtc_A 293 MWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAA 372 (886)
T ss_dssp CBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHH
T ss_pred ecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHH
Confidence 79999999999
Q ss_pred HHHHHHHhccCCCEEEEEEEecCCCCCC--CCCCC----CCCChhhHHhHhh
Q 018037 271 CKFAKEHALKNGPMILEMDTYRYHGHSM--SDPGS----TYRTRDEISGVRQ 316 (362)
Q Consensus 271 ~~~A~~~ar~~gP~lIe~~tyR~~GHs~--~D~~~----~YR~~~e~~~~~~ 316 (362)
+++|+++ +++|+||+++|+|++||+. .++.. .|++.+|++.|++
T Consensus 373 ~~~A~~~--~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 422 (886)
T 2qtc_A 373 FKKAQET--KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRD 422 (886)
T ss_dssp HHHHHHC--CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHH
T ss_pred HHHHHHc--CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHH
Confidence 9999874 3699999999999999973 33321 2889999998874
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=216.17 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=119.9
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++..++|+||+++|+|+|+|+|.++.+. ++.|||++|||++++|++||+|++|+.|+|| +|+|++||+|
T Consensus 110 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~ 189 (663)
T 3kom_A 110 GVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNI 189 (663)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-
T ss_pred CcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 5677899999999999999999986543 7899999999999999999999999999999 7899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC--CC--
Q 018037 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS--TY-- 305 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~~--g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~--~Y-- 305 (362)
+++++..... .+++.++ +||++++ +|||||++++.+++++|++. .++|+||+++|+|.+||+...... ++
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~--~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~ 266 (663)
T 3kom_A 190 SIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ--QQKPTLICCKTVIGFGSPEKAGTASVHGSP 266 (663)
T ss_dssp ----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC--SSSCEEEEEECCTTTTCTTTTTCSSTTSSC
T ss_pred ccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc--CCCCEEEEEecccccccCCCCCCccccCCC
Confidence 9988776543 5678775 5999999 99999999999999888761 289999999999999998653322 22
Q ss_pred CChhhHHhH
Q 018037 306 RTRDEISGV 314 (362)
Q Consensus 306 R~~~e~~~~ 314 (362)
-+++|++..
T Consensus 267 l~~e~~~~~ 275 (663)
T 3kom_A 267 LSDQERASA 275 (663)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 245666653
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=217.16 Aligned_cols=147 Identities=22% Similarity=0.246 Sum_probs=113.2
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++..++|+||+++|+|+|+|+|.++.+. ++.|||++|||++++|.++|+|++|+.++|| +|+|++||+|
T Consensus 149 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~ 228 (711)
T 3uk1_A 149 GVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGI 228 (711)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred CcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCc
Confidence 6677899999999999999999986543 7899999999999999999999999999999 8899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCC---
Q 018037 233 GMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYR--- 306 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~~--g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR--- 306 (362)
+|+.+..... .+++.++ +||+++++ |||+|++++.+++++|++ .++|+||+++|+|.+||+...+...|.
T Consensus 229 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~---~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~ 304 (711)
T 3uk1_A 229 SIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR---SDKPSLICCKTRIGNGAATKAGGHDVHGAP 304 (711)
T ss_dssp ETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT---CSSCEEEEEEC-------------------
T ss_pred ccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh---CCCCEEEEEccccccCCCCCCCcccccCCC
Confidence 9988776553 5678775 59999998 899999999998887653 289999999999999998544332333
Q ss_pred -ChhhHHhH
Q 018037 307 -TRDEISGV 314 (362)
Q Consensus 307 -~~~e~~~~ 314 (362)
+++|++..
T Consensus 305 l~~e~~~~~ 313 (711)
T 3uk1_A 305 LGADEIAKT 313 (711)
T ss_dssp -CHHHHHHH
T ss_pred CCHHHHHHH
Confidence 45565554
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=212.07 Aligned_cols=149 Identities=25% Similarity=0.288 Sum_probs=123.7
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++..++|++|+++|+|+|+|+|.++.+. ++.|||++|||++++|.+||++++|+.++|| +|+|++||+|
T Consensus 134 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~ 213 (690)
T 3m49_A 134 GVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI 213 (690)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB
T ss_pred ccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCe
Confidence 5667899999999999999999986542 7899999999999999999999999999998 7899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCC---
Q 018037 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYR--- 306 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~~--g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR--- 306 (362)
+|+.+..... .+++.++ +||+++++| ||+|++++.+++++|++. .++|+||+++|+|.+|++...+...|.
T Consensus 214 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~--~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~ 290 (690)
T 3m49_A 214 SLDGDLNRSF-SESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD--EKRPTLIEVRTTIGFGSPNKSGKSASHGSP 290 (690)
T ss_dssp CSSSBGGGTC-CCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSSC
T ss_pred ecccchhhcc-chhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc--CCCCEEEEEEeecccccCcccCcccccCCC
Confidence 9988776543 4677774 599999999 999999999999888751 289999999999999998544332222
Q ss_pred -ChhhHHhHh
Q 018037 307 -TRDEISGVR 315 (362)
Q Consensus 307 -~~~e~~~~~ 315 (362)
+++|++..+
T Consensus 291 ~~~e~~~~~~ 300 (690)
T 3m49_A 291 LGVEETKLTK 300 (690)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 455666543
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-23 Score=213.11 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=124.0
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc--------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~-------- 238 (362)
+.|+||+++|.|+|++++. ++++|||++|||+++++ +++|++|+.+++|+++||.||+ |++.+..
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 4689999999999999986 57899999999999886 5559999999999887777775 8863211
Q ss_pred --ccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE---ecCCCCCCCCCCCCCCChh--
Q 018037 239 --WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT---YRYHGHSMSDPGSTYRTRD-- 309 (362)
Q Consensus 239 --~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t---yR~~GHs~~D~~~~YR~~~-- 309 (362)
......+||.++ +||+++++|+ +++++.+++++|++. ..+||+|||+.| +|+.+|...|+++.||..+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~-~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKAI-AQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIE 568 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHHH-TTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHHHH
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHh-cCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHHHH
Confidence 112234678875 5999999998 456788888777621 129999999999 6667888888888888665
Q ss_pred hHHhHhhcCCHHHHHHHHHHHcCCCCHHHH
Q 018037 310 EISGVRQERDPIERIRKLILAHDLATEKEL 339 (362)
Q Consensus 310 e~~~~~~~~DPi~~~~~~L~~~g~~t~~el 339 (362)
++.+|. .+||+.+|+++|.++|+|++++.
T Consensus 569 ~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 569 AFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred HHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 566665 58999999999999999998764
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-16 Score=162.02 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=98.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccccc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRA---- 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~~---- 241 (362)
++.|+||+++|.|+|+++|. +++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++.......
T Consensus 410 ~~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~ 483 (590)
T 1v5e_A 410 PLFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKN 483 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCS
T ss_pred CCCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCC
Confidence 35799999999999999996 57889999999999886 477999999999987666555 78887543211
Q ss_pred -----cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 242 -----AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 242 -----~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
...+||.+. +||+++++|+ +++++.+++++|++.+|++||+|||+.|+|..
T Consensus 484 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 484 LFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp CCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred CccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCCCCCEEEEEEecccc
Confidence 134688875 5999999997 68899999999998766689999999999864
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-16 Score=161.94 Aligned_cols=120 Identities=24% Similarity=0.255 Sum_probs=97.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~----- 240 (362)
+++|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++......
T Consensus 439 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 512 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMD 512 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCC
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45799999999999999996 57899999999999875 457999999999986665555 5887543210
Q ss_pred -----------ccC----CchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018037 241 -----------AAK----SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (362)
Q Consensus 241 -----------~~~----~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~ 294 (362)
... .+||.+. +||+++++|+ +++++.+++++|++++++ +||+|||+.|+|..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 513 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp CSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred ccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 011 2578774 5999999997 577999999999997776 99999999999866
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.6e-16 Score=157.24 Aligned_cols=112 Identities=30% Similarity=0.408 Sum_probs=89.8
Q ss_pred ccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc--------
Q 018037 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR-------- 240 (362)
Q Consensus 170 g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~-------- 240 (362)
|+||+++|.|+|+++|. +++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++.+....
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 99999999999999996 56789999999999887 677999999999988777666 5888654311
Q ss_pred --ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 --AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 --~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. +||+++++|+ +.+++.+++++|++. +||+|||+.|.|
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~gp~liev~~~~ 525 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALSA---KGPVLIEVSTVS 525 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHTC---SSCEEEEEEBCC
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHHC---CCcEEEEEEecC
Confidence 0134678774 5999999998 466887777766542 899999999976
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=156.95 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=93.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE-cCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~-NN~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|.| ++++.|||++|||+++++ +++|++|+.+++|+++||. ||+|++.....
T Consensus 416 ~g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 491 (563)
T 2uz1_A 416 GYLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGP 491 (563)
T ss_dssp CTTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCT
T ss_pred CCCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence 346999999999999999986 567899999999999886 4569999999999866555 55688765421
Q ss_pred -ccc----CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -RAA----KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -~~~----~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+.. ..+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.|++
T Consensus 492 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~gp~liev~~~~ 546 (563)
T 2uz1_A 492 NRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALAH---NRPACINVAVAL 546 (563)
T ss_dssp TCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHHS---SSCEEEEEECCS
T ss_pred CcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHHC---CCCEEEEEEecc
Confidence 111 34678774 5999999996 688999988888763 899999999974
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=157.09 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=92.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++.....
T Consensus 417 ~g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 490 (566)
T 1ozh_A 417 NGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQR 490 (566)
T ss_dssp CTTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSS
T ss_pred CCcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCC
Confidence 35799999999999999996 57899999999999874 456999999999987666555 688765332
Q ss_pred ---cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 240 ---~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.....+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.|+|.
T Consensus 491 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~liev~~~~~ 544 (566)
T 1ozh_A 491 LSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMDV---DGPAVVAIPVDYR 544 (566)
T ss_dssp CCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHHS---SSCEEEEEEBCCT
T ss_pred CccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCCC
Confidence 12234688874 5999999997 567888888888753 8999999999873
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-15 Score=157.56 Aligned_cols=120 Identities=14% Similarity=0.091 Sum_probs=93.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc----c-
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW----R- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~----~- 240 (362)
++.|+||+++|.|+|+|+|.+.++.++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++..... .
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 487 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQY 487 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred cchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCc
Confidence 45799999999999999999877788999999999999874 566999999999987666555 588754321 1
Q ss_pred -ccCCchHhhh--cCCcc---eEEEeCCCHHHHHHHHH-HHHHHhccCCCEEEEEEEec
Q 018037 241 -AAKSPSYYKR--GDYVP---GLKVDGMDALAVKQACK-FAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -~~~~~~~~~~--g~gi~---g~~VdG~D~~av~~a~~-~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. +||++ +++|+ +++++.++++ ++++. .++|+|||+.|++
T Consensus 488 ~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~~--~~~p~liev~~~~ 542 (563)
T 2vk8_A 488 NEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFND--NSKIRMIEVMLPV 542 (563)
T ss_dssp GCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTTS--CSSEEEEEEECCT
T ss_pred ccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHhC--CCCcEEEEEEeCc
Confidence 1134678774 59999 99997 5778877777 55431 1479999999976
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=154.77 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=94.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~------ 239 (362)
+++|++|+++|.|+|+++|. +++.|||++|||+++++ +++|++|+.+++|+++|| +||+|++.....
T Consensus 423 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 496 (590)
T 1ybh_A 423 GGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKA 496 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTT
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCC
Confidence 45699999999999999996 57899999999999875 456999999999976555 555688754321
Q ss_pred ----cc--c------CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 240 ----RA--A------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 240 ----~~--~------~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
.. . ..+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.|+|....
T Consensus 497 ~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~liev~~~~~~~~ 562 (590)
T 1ybh_A 497 NRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLDT---PGPYLLDVICPHQEHV 562 (590)
T ss_dssp CCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHHS---SSCEEEEEECCTTCCC
T ss_pred ccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecCCccc
Confidence 00 1 13578774 5999999996 688998888888764 8999999999987653
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-15 Score=155.58 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=91.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++.....
T Consensus 433 ~g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 506 (573)
T 2iht_A 433 AGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHR 506 (573)
T ss_dssp SSSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSS
T ss_pred CCCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCC
Confidence 35699999999999999996 57889999999999875 467999999999986555555 588765421
Q ss_pred -----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.|+|
T Consensus 507 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~gp~liev~~~~ 561 (573)
T 2iht_A 507 SHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAEL---GRPFLIEVPVNY 561 (573)
T ss_dssp CCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHTS---SSCEEEEEEBCC
T ss_pred CcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEECCC
Confidence 12224678774 5999999996 678888888877642 899999999998
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-15 Score=157.58 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=93.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~~----- 240 (362)
++.|+||+++|.|+|+++|. +++.|||++|||+++++ + ++|++|+.+++|+++|| +||+|++......
T Consensus 510 g~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~-~-~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~ 583 (677)
T 1t9b_A 510 GGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT-L-TELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEH 583 (677)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-G-GGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTT
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc-H-HHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCC
Confidence 45689999999999999995 67899999999999874 4 45999999999986555 5556887543211
Q ss_pred -----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 241 -----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
....+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.|+|...
T Consensus 584 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 584 RYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVST---KGPVLLEVEVDKKVP 640 (677)
T ss_dssp CCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHHC---SSCEEEEEEBCSSCC
T ss_pred CcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHHC---CCcEEEEEEecCCcc
Confidence 1134688874 5999999996 688998888888753 899999999998654
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-15 Score=155.11 Aligned_cols=119 Identities=23% Similarity=0.320 Sum_probs=94.9
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc-------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------- 239 (362)
+.|+||+++|.|+|+++|. +++.|||++|||+++++ .++|++|+.+++|+++||.|| +|++.....
T Consensus 422 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 495 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQN 495 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCC
Confidence 4699999999999999996 57889999999999885 477999999999987665555 588765432
Q ss_pred --cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018037 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (362)
Q Consensus 240 --~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs 297 (362)
.....+||.+. +||+++++|++ ++++.+++++|++. +||+|||+.|+|..+..
T Consensus 496 ~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~~---~gp~liev~~~~~~~~~ 552 (589)
T 2pgn_A 496 NWTEFMNPDWVGIAKAFGAYGESVRE--TGDIAGALQRAIDS---GKPALIEIPVSKTQGLA 552 (589)
T ss_dssp CSCBCCCCCHHHHHHHHTCEEEECTT--TCCHHHHHHHHHHH---CSCEEEEEECCSSSSTT
T ss_pred ccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHhC---CCCEEEEEEecCCCCcC
Confidence 11234688874 59999999974 55888888888764 99999999999876543
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-15 Score=153.17 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=92.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEE-EEcCCccccccccc----c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV-CENNHYGMGTAEWR----A 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfV-v~NN~~gi~t~~~~----~ 241 (362)
++.|+||+++|.|+|+++|. +++.||+++|||+++++ +++|++|+.+++|+++| ++||+|++...... .
T Consensus 406 ~~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 479 (566)
T 2vbi_A 406 MQWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNY 479 (566)
T ss_dssp TTTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC
T ss_pred CcccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccC
Confidence 45799999999999999985 57899999999999874 45599999999997655 55557988655431 1
Q ss_pred cCCchHhhh--cCCc-----ceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 242 AKSPSYYKR--GDYV-----PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 242 ~~~~~~~~~--g~gi-----~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
...+||.+. +||+ ++++|+ +++++.+++++|++. .+||+|||+.|+|
T Consensus 480 ~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~--~~gp~liev~~~~ 533 (566)
T 2vbi_A 480 IKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKAN--TRGPTLIECQIDR 533 (566)
T ss_dssp CCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHC--CSSCEEEEEECCT
T ss_pred CCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCc
Confidence 234577764 5899 999997 688999999888762 1799999999987
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-15 Score=152.09 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=89.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||++|||+++++ +++|.+|+.+++|+++||.|| +|++.....
T Consensus 405 ~~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 478 (552)
T 1ovm_A 405 PLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 478 (552)
T ss_dssp TTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred hhhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCc
Confidence 45799999999999999996 57889999999998874 556999999999977665555 588764321
Q ss_pred cccCCchHhhh--cCCc----ceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 RAAKSPSYYKR--GDYV----PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~~~~~~~~~~~--g~gi----~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. +||+ ++++|+ +++++.+++++|++ .+||+|||+.|++
T Consensus 479 ~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 532 (552)
T 1ovm_A 479 NDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAH---HERLSLIEVMLPK 532 (552)
T ss_dssp GCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTT---CSSEEEEEEECCT
T ss_pred ccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEcCc
Confidence 11234678774 5999 899997 57788777776643 2899999999976
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=149.37 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=90.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEE-EEcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV-CENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfV-v~NN~~gi~t~~~~----- 240 (362)
++.|+||+++|.|+|+++|. +++.||+++|||+++++ .++|++|+.+++|+++| ++||+||+.+....
T Consensus 403 ~~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~ 476 (549)
T 3eya_A 403 FNHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYL 476 (549)
T ss_dssp TTTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC----------
T ss_pred CCCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCC
Confidence 35689999999999999986 57889999999998775 45699999999997655 55556887432211
Q ss_pred ----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 241 ----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
....+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.|.+..
T Consensus 477 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~gp~liev~~~~~~ 531 (549)
T 3eya_A 477 TDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFSI---DGPVLVDVVVAKEE 531 (549)
T ss_dssp --CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHHS---SSCEEEEEEBCCCC
T ss_pred CcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecccc
Confidence 1134678774 5999999996 667888888887764 99999999998754
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-15 Score=151.64 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=92.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEE-EEEcCCccccccccc----c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAIL-VCENNHYGMGTAEWR----A 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIf-Vv~NN~~gi~t~~~~----~ 241 (362)
++.|+||+++|.|+|+++|. +++.||+++|||+++++ +++|++|+.+++|+++ |++||+|++...... .
T Consensus 410 ~~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 483 (568)
T 2wvg_A 410 MQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNN 483 (568)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcC
Confidence 45789999999999999996 57899999999999873 4559999999999765 556667988655431 1
Q ss_pred cCCchHhhh--cCCc---------ceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 242 AKSPSYYKR--GDYV---------PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 242 ~~~~~~~~~--g~gi---------~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
...+||.+. +||+ ++++|+ +.+++.+++++|++. .+||+|||+.|+|
T Consensus 484 ~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~--~~gp~liev~~~~ 541 (568)
T 2wvg_A 484 IKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN--TDGPTLIECFIGR 541 (568)
T ss_dssp CCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC--CSSCEEEEEECCT
T ss_pred CCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEcCc
Confidence 234578774 4888 899996 678999999988763 2799999999987
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-14 Score=150.22 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=90.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||++|||+++++ +++|++|+.+++|+++|| +||+|++.....
T Consensus 422 ~~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 495 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSY 495 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred ccchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCc
Confidence 56799999999999999996 57899999999999874 455999999999976555 555798765332
Q ss_pred cccCCchHhhh--cCCcc-----eEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 240 RAAKSPSYYKR--GDYVP-----GLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 240 ~~~~~~~~~~~--g~gi~-----g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
.....+||.+. +||++ +++|+ +++++.++++++. ++ +||+|||+.|+|
T Consensus 496 ~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 496 NDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYWIELVLEK 551 (570)
T ss_dssp GCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEEEEEECCT
T ss_pred cCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEEEEEEcCc
Confidence 11234678774 59998 78996 5788888887742 23 899999999986
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=150.82 Aligned_cols=115 Identities=19% Similarity=0.170 Sum_probs=90.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCcccccccc-----c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW-----R 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~-----~ 240 (362)
++.|+||+++|.|+|+|+|. +++.|||++|||++++ .+++|++|+.+++|+++|| +||+|++..... .
T Consensus 419 ~~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~~--~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 492 (565)
T 2nxw_A 419 GYYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFN 492 (565)
T ss_dssp TTTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHHH--HGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGG
T ss_pred CccccccccchHHHHHHHhC----CCCcEEEEEechHHHh--hHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCC
Confidence 34689999999999999996 5788999999999884 4567999999999976555 555688754321 1
Q ss_pred ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCE-EEEEEEec
Q 018037 241 AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPM-ILEMDTYR 292 (362)
Q Consensus 241 ~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~-lIe~~tyR 292 (362)
....+||.+. +||+++++|+ +++++.+++++|++. +||+ |||+.|+|
T Consensus 493 ~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~~liev~~~~ 542 (565)
T 2nxw_A 493 DLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFAT---RGRFQLIEAMIPR 542 (565)
T ss_dssp BCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred cCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHhc---CCCeEEEEEEccc
Confidence 2234688874 5999999997 678998888888753 7898 99999976
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=146.84 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=91.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-c-cccccc---cc-
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y-GMGTAE---WR- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~-gi~t~~---~~- 240 (362)
++.|+||+++|.|+|+++| +++.||+++|||++++. .++|++|+.+++|+++||.||+ | ++...+ ..
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 495 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVI 495 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBC
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCc
Confidence 5679999999999999998 46789999999998763 4559999999999887777776 4 433211 00
Q ss_pred ---ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 241 ---~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
....+||.+. +||+++++|+ +++++.+++++|++. ++|+|||+.|+|.
T Consensus 496 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~~ 548 (568)
T 2c31_A 496 SCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVAS---GKPCLINAMIDPD 548 (568)
T ss_dssp CTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHHH---TSCEEEEEEBCTT
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeccc
Confidence 0234688874 5999999996 688999999888754 8999999999874
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-14 Score=144.14 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=90.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-c-cccccc---c-c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y-GMGTAE---W-R 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~-gi~t~~---~-~ 240 (362)
++.|++|+++|.|+|+++| +++.||+++|||++++. + ++|.+|+.+++|+++||.||+ | ++.... . +
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 490 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS-G-MEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGA 490 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT-G-GGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCC
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCC
Confidence 5679999999999999998 46889999999998774 3 559999999999887777775 4 443211 0 0
Q ss_pred -----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 241 -----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
....+||.+. +||+++++|+ +++++.+++++|++. ++|+|||+.|+|..
T Consensus 491 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~~~ 546 (564)
T 2q28_A 491 PSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQS---RKPTIINVVIDPAA 546 (564)
T ss_dssp CCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHHH---TSCEEEEEEBCTTS
T ss_pred ccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecccc
Confidence 1124678774 5999999996 688999999888754 89999999998754
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-14 Score=147.02 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=82.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc-------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------- 238 (362)
+..|++|+ +|.|+|+++| +++.|||++|||++.+. +.| |++|+.+++|+++||.||+ |++....
T Consensus 414 g~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 485 (556)
T 3hww_A 414 GASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD-LNA-LALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER 485 (556)
T ss_dssp SSCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT-GGG-HHHHTTCSSCEEEEEEESCC--------------
T ss_pred cccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc-chh-hHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence 45677888 9999999998 26789999999998764 444 9999999999887777776 5664321
Q ss_pred cc---ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 WR---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 ~~---~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ....+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.|++
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~gp~liev~~~~ 539 (556)
T 3hww_A 486 ERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAWRT---PTTTVIEMVVND 539 (556)
T ss_dssp ---CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHTTS---SSEEEEEEECCS
T ss_pred HHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHHhC---CCCEEEEEECCc
Confidence 11 1135688874 5999999996 567887777666532 899999998865
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-14 Score=147.31 Aligned_cols=112 Identities=14% Similarity=0.032 Sum_probs=85.3
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCcccccccc--------
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW-------- 239 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~-------- 239 (362)
.+.+|+++|.|+|+++|. ++.|||++|||+++++ +. +|++|+.+++|+++|| +||+|++.....
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~~-eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-LN-GLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-GG-GGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-HH-HHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 467899999999999994 5789999999999885 44 4999999999986555 555788743221
Q ss_pred -cc---cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -RA---AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -~~---~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+. ...+||.+. +||+++++|+ +++++.+++++|++ .+||+|||+.|+|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQAD---KPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCCS---SCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHHh---CCCCEEEEEECCc
Confidence 11 124678774 5999999997 57787776665543 2899999999865
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-13 Score=139.94 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=73.6
Q ss_pred cchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc--cc-------c-
Q 018037 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE--WR-------A- 241 (362)
Q Consensus 173 G~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~--~~-------~- 241 (362)
|+++|.|+|+|+ +++.|||++|||++++. + ++|++|+++++|+++||.|| +||+.... .. .
T Consensus 439 ~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~-~-~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~ 510 (578)
T 3lq1_A 439 DGVVSSALGASV------VFQPMFLLIGDLSFYHD-M-NGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLF 510 (578)
T ss_dssp SSHHHHHHHHTT------TSSSEEEEEEHHHHHHT-G-GGGHHHHHTTCCEEEEEECCC---------------------
T ss_pred ccHHHHHHHHhc------CCCCEEEEEchHHHHhh-H-HHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhc
Confidence 346999999963 47889999999998764 3 44999999999988776666 57875421 10 0
Q ss_pred --cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 242 --AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 242 --~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
...+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.|.+.
T Consensus 511 ~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~liev~~~~~ 561 (578)
T 3lq1_A 511 GTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASYH---KGLDIIEVKTNRH 561 (578)
T ss_dssp ----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTTS---SSEEEEEEC----
T ss_pred cCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHhC---CCCEEEEEECCcc
Confidence 124578774 5999999996 678888777776543 9999999988763
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=136.96 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=109.6
Q ss_pred cCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccch---HHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQ---LFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 156 ~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~---~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.|....-.++...+|.||++++.|+|+|+ .+++..|+|++|||..++|. .||+.+++..+++. +|.|+++|+
T Consensus 161 gHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~ 236 (845)
T 3ahc_A 161 SHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNG 236 (845)
T ss_dssp SSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECS
T ss_pred CCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCC
Confidence 35533234778889999999999999995 45788999999999999999 99999999999998 578899999
Q ss_pred ccccccccccc-CCchHhh--hcCCcceE-EEeC-C--CHHHHHHHHHHHHHH-----------hcc---CCC--EEEEE
Q 018037 232 YGMGTAEWRAA-KSPSYYK--RGDYVPGL-KVDG-M--DALAVKQACKFAKEH-----------ALK---NGP--MILEM 288 (362)
Q Consensus 232 ~gi~t~~~~~~-~~~~~~~--~g~gi~g~-~VdG-~--D~~av~~a~~~A~~~-----------ar~---~gP--~lIe~ 288 (362)
+.|..++.... ...++.+ ++||...+ .||| + |++++.+++.+|++. +++ ++| .+|.+
T Consensus 237 ~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~ 316 (845)
T 3ahc_A 237 YKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIF 316 (845)
T ss_dssp BSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEE
T ss_pred CcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEE
Confidence 99988775432 2345555 46888888 8999 9 999999888766632 332 589 99999
Q ss_pred EEecCC
Q 018037 289 DTYRYH 294 (362)
Q Consensus 289 ~tyR~~ 294 (362)
+|.+.+
T Consensus 317 rT~kG~ 322 (845)
T 3ahc_A 317 RTPKGW 322 (845)
T ss_dssp ECCTTT
T ss_pred ECcccC
Confidence 999999
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=119.70 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=73.2
Q ss_pred CCeEEEEeCCc-ccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccccc----------------CCchHhh--hc
Q 018037 192 ETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA----------------KSPSYYK--RG 251 (362)
Q Consensus 192 ~~vvv~~~GDG-a~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~----------------~~~~~~~--~g 251 (362)
++.||++.||| ++.+| +.| |.+|..+++|+++||.||+ ||+...+.... ..+||.. ++
T Consensus 953 ~~~Vv~i~GDG~~~~mg-~~e-L~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG-YGG-LDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT-HHH-HHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcc-hHH-HHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 67877 455 9999999999877666665 78764322110 1257876 45
Q ss_pred CCcceEEE-eC-CCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 252 DYVPGLKV-DG-MDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 252 ~gi~g~~V-dG-~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
||++++.+ .- .++.++.+++++|+++ +||+|||+.+.-.
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~~---~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAESF---PGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHHS---SSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHhc---CCCEEEEEeecCc
Confidence 99999864 33 4899999999999976 9999999996544
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.85 Score=46.76 Aligned_cols=104 Identities=16% Similarity=0.044 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh-cCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR-GDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~-g~gi 254 (362)
-+|.|.|.+. ++-.++++..|=|++|- .-++..|..-++|+|+|.-+-... ++.....+. .|.... .+--
T Consensus 57 ~~A~GyAr~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~--~d~~~~~~~tk 128 (589)
T 2pgn_A 57 WMVNGYNYVK---DRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQ--VPWQSFTPIAR 128 (589)
T ss_dssp HHHHHHHHHH---TSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSC--CCGGGGTTTSS
T ss_pred HHHHHHHHHH---CCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCCcccc--cChhhccccEE
Confidence 3566666553 45678999999999873 445777889999999988775542 221101111 122221 1222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...++ .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 129 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (589)
T 2pgn_A 129 STQRV--ERLDKVGEAIHEAFRVAEGHPAGPAYVDIPF 164 (589)
T ss_dssp EEEEC--CSGGGHHHHHHHHHHHHTSSSCCEEEEEEET
T ss_pred EEeec--CCHHHHHHHHHHHHHHHhcCCCccEEEEeCH
Confidence 23444 4778888999999988877 4999998864
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.21 Score=48.97 Aligned_cols=111 Identities=19% Similarity=0.145 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-cc--ccccccc-cCCchHhhh
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GM--GTAEWRA-AKSPSYYKR 250 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi--~t~~~~~-~~~~~~~~~ 250 (362)
.+.+|+|++++- .+.++...|.|-.. ..+.|..++..++|+|+++-+... +. ++..+.. .....|...
T Consensus 76 a~~~a~Gaa~aG-----~r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~ 147 (395)
T 1yd7_A 76 SIAAAIGASWAG-----AKAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTH 147 (395)
T ss_dssp HHHHHHHHHHTT-----CCEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC-------------------------
T ss_pred HHHHHHHHHHhC-----CcEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccC
Confidence 355677777652 45777888888854 244455667889999887776543 22 2222211 111111211
Q ss_pred c-CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 018037 251 G-DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (362)
Q Consensus 251 g-~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs 297 (362)
+ +|++.+ .-.++.+++..+..|++.+++ +.|+++....+ + +|+
T Consensus 148 g~~g~~vl--~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~ 192 (395)
T 1yd7_A 148 GDHSLIVL--SPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHM 192 (395)
T ss_dssp -CCCCEEE--CCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHC
T ss_pred CCcceEEE--eCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCe
Confidence 2 455444 446899999999999988887 89999988765 2 454
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=0.66 Score=47.53 Aligned_cols=105 Identities=20% Similarity=0.163 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~g 253 (362)
.-+|.|.|.+. ++-.++++..|=|++| ..-++..|...++|+|+|+-+-.........-+ ..|... +.+-
T Consensus 63 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q--~~d~~~~~~~~~ 134 (590)
T 1ybh_A 63 VFAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ--ETPIVEVTRSIT 134 (590)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCHHHHHGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCCCccc--ccCHHHHHHHHh
Confidence 34566776653 4456777778888777 345677788999999998876543211110011 112222 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...++ .+++++.+.+++|+..+.. .||+.|++-.
T Consensus 135 k~~~~v--~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~ 171 (590)
T 1ybh_A 135 KHNYLV--MDVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (590)
T ss_dssp SEEEEC--CCGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred CeEEec--CCHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence 223444 4788899999999988876 5999999864
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=0.83 Score=47.01 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCcc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVP 255 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi~ 255 (362)
-+|.|.|.+. ++-.++++..|=|++|- .-++..|..-++|+|+|+-+-... +.....+......+.. .+-..
T Consensus 64 ~aA~GyAr~t---g~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~-~~tk~ 136 (603)
T 4feg_A 64 MAAAADAKLT---GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYA-DVADY 136 (603)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGT-TTCSE
T ss_pred HHHHHHHHHh---CCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhh-hhceE
Confidence 4466666553 44567777778888873 455778889999999888653321 1111101000111111 11122
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
..+|. +++++.+.+.+|+..+.. .||++|++-
T Consensus 137 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 137 NVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp EEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 23442 555666777777766666 899999985
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.82 Score=46.63 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|+-+-... ++.. ..+ ..|.... .+-
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~~-~~Q--~~d~~~~~~~~t 132 (566)
T 1ozh_A 62 FMAAAVGRIT---GKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQ-VHQ--SMDTVAMFSPVT 132 (566)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC---------CCCHHHHHGGGC
T ss_pred HHHHHHHHHH---CCCEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCCC-ccc--ccCHHHHHHHHh
Confidence 4566666553 4455677777888877 3455777888899999988765432 2211 111 1233221 122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
....++ .+++++.+.+.+|+..+.. .||+.|++-..
T Consensus 133 k~~~~v--~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 133 KYAIEV--TAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred heEEEc--CCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 223455 4777888888999888776 59999998643
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=1.1 Score=45.78 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|+-+.... ++.....+ ..|.... .+-
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q--~~d~~~~~~~~~ 133 (573)
T 2iht_A 62 VAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQ--CLDSVAIVAPMS 133 (573)
T ss_dssp HHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTT--CCCHHHHHGGGS
T ss_pred HHHHHHHHHH---CCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCcCccc--cCCHHHHHHhHh
Confidence 4566666543 4445677777777776 4556777888999999998776543 22201111 1233221 122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
-...++ .+++++.+.+.+|+..+.. .||+.|++-..
T Consensus 134 k~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 134 KYAVEL--QRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred hEEEEc--CCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 223445 4777888999999988877 49999998753
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=1 Score=45.89 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|++|- .-++..|...++|+|+|+-+-... ++... .+.. .|... +.+-
T Consensus 55 ~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-~Q~~-~d~~~~~~~~t 126 (563)
T 2uz1_A 55 HAAEGYARAG---AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETNT-LQAG-IDQVAMAAPIT 126 (563)
T ss_dssp HHHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSCC-TTCC-CCHHHHHGGGC
T ss_pred HHHHHHHHHh---CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCchh-hhhh-ccHHHHhhhhh
Confidence 4566766553 44456777777787773 445667888999999998775542 21111 1110 23322 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
....++ .+++++.+.+.+|+..+.. .||+.|++-..
T Consensus 127 k~~~~v--~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 127 KWAHRV--MATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp SEEEEC--CCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 223455 4777888889999988876 49999998643
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=0.88 Score=47.68 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|+-+-... ++... -+ ..|... +.+-
T Consensus 134 ~aAdGyAr~t---Gkpgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~~a-~Q--~~Dq~~i~~~~t 204 (677)
T 1t9b_A 134 HMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGTDA-FQ--EADVVGISRSCT 204 (677)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTSCC-TT--CCCHHHHTGGGS
T ss_pred HHHHHHHHHH---CCCEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCCCC-cc--ccCHHHHhhhhe
Confidence 4566776653 4556777888888877 3445777888899999988765432 11110 01 112211 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
-....| .+++++...+.+|+..+.. .||++|++-
T Consensus 205 k~~~~v--~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 205 KWNVMV--KSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eEEEEc--CCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 223445 4778899999999988876 589999986
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=1.2 Score=45.06 Aligned_cols=103 Identities=12% Similarity=0.003 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|++|- .-++..|..-+.|+|+|.-+-... ++... -+ ..|.... .+-
T Consensus 55 ~~A~GyAr~t---g~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~~~-~Q--~~d~~~~~~~~t 125 (549)
T 3eya_A 55 FAAGAEAQLS---GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSGY-FQ--ETHPQELFRECS 125 (549)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTSCC-TT--CCCHHHHTSTTC
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCCCC-CC--ccCHHHHHhhhh
Confidence 3466666553 44567777788888873 456778889999999988654321 11100 01 1122221 122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
-....+ .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 126 k~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 161 (549)
T 3eya_A 126 HYCELV--SSPEQIPQVLAIAMRKAVLNRGVSVVVLPG 161 (549)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEEEEH
T ss_pred heEEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 223344 3677788888888887777 8999999853
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=2.1 Score=43.44 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-cccc--ccc--cCC-chHhh
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAE--WRA--AKS-PSYYK 249 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~--~~~--~~~-~~~~~ 249 (362)
.-+|.|.|.+. + -.++++..|=|++| ..-++..|...++|+|+|+-+-.... +... ... ... .|...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (568)
T 2wvg_A 54 GFSAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 126 (568)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHH
Confidence 34566776553 4 45677777878776 45567778899999999987655422 1110 000 001 12222
Q ss_pred h--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 250 R--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 250 ~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
. .+-....++. +++++.+.+.+|+..+.. .||+.|++-.
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 168 (568)
T 2wvg_A 127 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIAC 168 (568)
T ss_dssp HHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred HHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 1 1323345663 667777778888877777 8999999864
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=2.4 Score=43.93 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCchHhhhcCC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~~~~~~g~g 253 (362)
+++|+|+|++ |...++++.++++.. ..++.+.+++..++|+++++.+.+++.+ .+++. ...+..-. -.
T Consensus 368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~--~~ed~a~l-~~ 437 (616)
T 3mos_A 368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQM--ALEDLAMF-RS 437 (616)
T ss_dssp HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGC--BSSHHHHH-HT
T ss_pred HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCccc--CHHHHHHh-cC
Confidence 3556677764 222466778999874 3566677888999999998887766433 22221 12222221 23
Q ss_pred cceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 254 VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 254 i~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
+|++.| .=.|+.++..+++.|++. ++|++|-.
T Consensus 438 iP~l~V~~P~d~~e~~~~l~~a~~~---~gp~~ir~ 470 (616)
T 3mos_A 438 VPTSTVFYPSDGVATEKAVELAANT---KGICFIRT 470 (616)
T ss_dssp STTEEEECCCSHHHHHHHHHHHHTC---CSEEEEEC
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhc---CCCEEEEE
Confidence 666655 446888888888887754 89987743
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=88.29 E-value=1.9 Score=43.83 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-ccccc--ccc--cCC-chHhh
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRA--AKS-PSYYK 249 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~--~~~--~~~-~~~~~ 249 (362)
.-+|.|.|.+. + -.++++..|=|++| ..-++..|...++|+|+|+-+-... ++... ... ... .|...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (566)
T 2vbi_A 54 GFSAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLE 126 (566)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHH
T ss_pred HHHHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHH
Confidence 34566766553 4 45666666777776 4455777889999999998765432 21110 000 001 12222
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
+.+-.....+. +++++.+.+.+|+..+.. .||+.|++-.
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 168 (566)
T 2vbi_A 127 MARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIAC 168 (566)
T ss_dssp HHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred HHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 12333345553 455566677777776666 8999999864
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=88.20 E-value=1.7 Score=41.55 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEE-EeCCcccccchHHHHHHHH-H--------hCCCCeEEEEEcCCc-ccccccccccC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALNIA-A--------LWDLPAILVCENNHY-GMGTAEWRAAK 243 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~-~~GDGa~~~G~~~Ealn~A-~--------~~~LPvIfVv~NN~~-gi~t~~~~~~~ 243 (362)
.+++|.|+|++ + -++++. .++|.. + ..++.+... + +.++|+++++.+ ++ |-..+++.+.
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~-~--~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~- 143 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFS-M--QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQC- 143 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGG-G--GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCC-
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHH-H--HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhH-
Confidence 35667787764 2 244554 488887 2 244445443 3 389999999885 43 3222222121
Q ss_pred CchHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018037 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (362)
.+ ..--.+|++.| .-.|+.+.+..++.|++. ++|++|-..
T Consensus 144 -~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i~~~ 184 (341)
T 2ozl_B 144 -FA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD---NNPVVVLEN 184 (341)
T ss_dssp -CH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEEEC
T ss_pred -HH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc---CCCEEEEEC
Confidence 12 11112455443 446899999999998875 899988553
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=87.78 E-value=1.1 Score=43.49 Aligned_cols=97 Identities=18% Similarity=0.043 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEE-eCCcccccchHHHHHHH-HHhC--------CCCeEEEEEcCCcccccccccccCCc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALNI-AALW--------DLPAILVCENNHYGMGTAEWRAAKSP 245 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~-~GDGa~~~G~~~Ealn~-A~~~--------~LPvIfVv~NN~~gi~t~~~~~~~~~ 245 (362)
+++|.|+|++ + -++++.+ ++|... ..++.+.. ++.. ++|+++++.+.+..-..+.+.+
T Consensus 111 v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~---- 178 (369)
T 1ik6_A 111 LGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSN---- 178 (369)
T ss_dssp HHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccccc----
Confidence 4567787764 2 2445544 999772 23333433 4444 9999999887663212222211
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
.+...--.+|++.| .=.|+.+.+..++.|++. ++|++|-
T Consensus 179 ~~~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~~---~~Pv~i~ 218 (369)
T 1ik6_A 179 SPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRG---DDPVVFL 218 (369)
T ss_dssp -HHHHHHTCTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEE
T ss_pred cHHHHHcCCCCcEEEecCCHHHHHHHHHHHHhC---CCCEEEE
Confidence 11121113455444 446899999999998864 8999884
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.53 E-value=1.1 Score=46.01 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCcc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVP 255 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi~ 255 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|.-+-... ++....+......+.. .+--.
T Consensus 83 ~aA~GyAr~t---gkpgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~-~~tk~ 155 (604)
T 2x7j_A 83 FFALGLAKAK---QRPVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFG-NFVKF 155 (604)
T ss_dssp HHHHHHHHHH---TSCEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTG-GGSSC
T ss_pred HHHHHHHHhh---CCCEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhh-hheee
Confidence 3566766553 4556777778888877 3445777888999999998765432 1111001000111111 11112
Q ss_pred eEEEeCCCHHH-------HHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 256 GLKVDGMDALA-------VKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 256 g~~VdG~D~~a-------v~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
...|. ++++ +.+.+++|+..+.. .||+.|++-..
T Consensus 156 ~~~v~--~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 156 FTDSA--LPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp EEECC--CCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeecC--CCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 34443 2332 67777888877765 69999998753
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=87.26 E-value=0.98 Score=46.89 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhhhcCCc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYV 254 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~~g~gi 254 (362)
+++|+|+|++ .-++++.++.+.. +-.+-..++.++..++||+|++.+.+. |-..+++.. ..|..-. -.+
T Consensus 377 ~~~a~G~A~~-----G~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~--~~d~a~~-r~i 446 (629)
T 2o1x_A 377 VTTAAGMALQ-----GMRPVVAIYSTFL--QRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG--VFDLSFL-RSI 446 (629)
T ss_dssp HHHHHHHHHT-----TCEEEEEEEHHHH--GGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB--CSHHHHT-TTS
T ss_pred HHHHHHHHHc-----CCEEEEEecHHHH--HHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc--cHHHHHH-Hcc
Confidence 4567777764 2356777777754 222333467788999999999977664 211222222 1232221 124
Q ss_pred ceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 255 PGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 255 ~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|++.| .=.|+.+++..++.|++. ++|++|-.
T Consensus 447 P~l~v~~P~d~~e~~~~~~~a~~~---~~Pv~i~~ 478 (629)
T 2o1x_A 447 PGVRIGLPKDAAELRGMLKYAQTH---DGPFAIRY 478 (629)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHS---SSCEEEEC
T ss_pred CCcEEEecCCHHHHHHHHHHHHhC---CCCEEEEe
Confidence 55444 446899999999999876 89998854
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=86.68 E-value=3.9 Score=42.82 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhCC-CCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCchHhhhcCC
Q 018037 177 PLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~-~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~~~~~~g~g 253 (362)
++|.|+|+. | .-++++.++.+.+. -.++++..++..++||+|++...+.+.+ .+++ +. ..+.... -.
T Consensus 428 ~~a~GlA~~----G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH-q~-~edla~l-r~ 497 (675)
T 1itz_A 428 AICNGIALH----SPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH-QP-IEHLVSF-RA 497 (675)
T ss_dssp HHHHHHHTT----CTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-CC-SSHHHHH-HS
T ss_pred HHHHHHHhc----CCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc-Cc-HHHHHHh-cc
Confidence 466676643 3 13566666655542 3567788899999999999987776643 2333 11 2233221 13
Q ss_pred cceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 254 VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 254 i~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
+|++.| .=.|+.++..+++.|++. .++|++|-.
T Consensus 498 iP~l~V~~Pad~~e~~~~l~~a~~~--~~~Pv~i~~ 531 (675)
T 1itz_A 498 MPNILMLRPADGNETAGAYKVAVLN--RKRPSILAL 531 (675)
T ss_dssp SSSCEEECCCSHHHHHHHHHHHHHC--TTSCEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHh--CCCcEEEEe
Confidence 566554 446889999999998862 279999843
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=86.53 E-value=1.3 Score=45.33 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCcc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVP 255 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi~ 255 (362)
-+|.|.|.+ .++-.++++..|=|++| ..-++..|...++|+|+|+-+.... ++....+......+.. .+--.
T Consensus 57 ~~A~GyAr~---tgk~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~-~~tk~ 129 (590)
T 1v5e_A 57 MAAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYD-HIAVY 129 (590)
T ss_dssp HHHHHHHHT---TCCCCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHH-TTCSE
T ss_pred HHHHHHHHH---HCCCEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHH-hhccE
Confidence 445565543 34556777777888776 3445666888899999998776543 2211111111111111 12222
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc-C-CCEEEEEE
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK-N-GPMILEMD 289 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~-~-gP~lIe~~ 289 (362)
...+ .+++++.+.+++|+..+.. + ||++| +-
T Consensus 130 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP 162 (590)
T 1v5e_A 130 NRRV--AYAEQLPKLVDEAARMAIAKRGVAVLE-VP 162 (590)
T ss_dssp EEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEE-EE
T ss_pred EEEe--CCHHHHHHHHHHHHHHHhcCCCceEEE-Ec
Confidence 3445 4777888889999888877 4 89999 54
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=86.01 E-value=2.2 Score=40.51 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=58.1
Q ss_pred chhHHHHHHHHHHhhCCCCCeEEE-EeCCcccccchHHHHHH-HHHh--------CCCCeEEEEEcCCcccccccccccC
Q 018037 174 AQIPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALN-IAAL--------WDLPAILVCENNHYGMGTAEWRAAK 243 (362)
Q Consensus 174 ~~~p~A~G~A~A~k~~~~~~vvv~-~~GDGa~~~G~~~Ealn-~A~~--------~~LPvIfVv~NN~~gi~t~~~~~~~ 243 (362)
..+++|.|+|++- -++++. .++++. + ..++.+. .++. +++|+++++.+.+ +...+.+..
T Consensus 63 ~~~~~a~G~A~~G-----~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~s-- 131 (338)
T 1qs0_B 63 GIVGTAVGMGAYG-----LRPVVEIQFADYF-Y--PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTHS-- 131 (338)
T ss_dssp HHHHHHHHHHHHT-----CEEEEECSCGGGC-G--GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSSS--
T ss_pred HHHHHHHHHHhCC-----CEEEEEeccHhHH-H--HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCccccc--
Confidence 3456788888762 244443 488887 2 2444443 3443 3599999987654 322222211
Q ss_pred CchHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
..|..-.. .+|++.| .-.|+.+.+..++.|++. ++|++|-.
T Consensus 132 ~~d~~~l~-~iP~l~V~~Psd~~e~~~~l~~A~~~---~~Pv~i~~ 173 (338)
T 1qs0_B 132 QSPEAMFT-QVCGLRTVMPSNPYDAKGLLIASIEC---DDPVIFLE 173 (338)
T ss_dssp CCCHHHHT-TSTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEEE
T ss_pred ccHHHHHh-cCCCCEEEeeCCHHHHHHHHHHHHhc---CCcEEEEE
Confidence 12332211 2344333 446899999999998875 89998844
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.94 E-value=3.1 Score=42.98 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhhhcCCc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYV 254 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~~g~gi 254 (362)
+++|+|+|++ .-++++.++++... -.+-..++.++..++|+++++.+.++ |-..+++.+ ..|+... -.+
T Consensus 374 ~~~a~G~A~~-----G~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~--~~d~~~~-~~i 443 (621)
T 2o1s_A 374 VTFAAGLAIG-----GYKPIVAIYSTFLQ--RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG--AFDLSYL-RCI 443 (621)
T ss_dssp HHHHHHHHHT-----TCEEEEEEETTGGG--GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB--CSHHHHT-TTS
T ss_pred HHHHHHHHHC-----CCEEEEEehHhHHH--HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc--hHHHHHH-hcC
Confidence 4567787774 24677788888752 22333467788999999999987765 212232222 1232221 124
Q ss_pred ceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 255 PGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 255 ~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|++.| .=.|+.+++..++.|++. .++|++|-.
T Consensus 444 P~l~v~~P~d~~e~~~~l~~a~~~--~~~Pv~i~~ 476 (621)
T 2o1s_A 444 PEMVIMTPSDENECRQMLYTGYHY--NDGPSAVRY 476 (621)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHC--CSSCEEEEC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 44443 446899999999998863 278998854
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=85.82 E-value=2 Score=43.64 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccc--cccCCch-Hhh--h
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEW--RAAKSPS-YYK--R 250 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~--~~~~~~~-~~~--~ 250 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|+-+-... ++.... .+....+ ... +
T Consensus 73 ~~A~GyAr~t---gkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~ 146 (565)
T 2nxw_A 73 FAADAAARYS---STLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFK 146 (565)
T ss_dssp HHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHT
T ss_pred HHHHHHHHHh---CCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHH
Confidence 3466776653 4445677777888776 3455777888999999998764332 211100 0000011 211 1
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 251 g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
.+-....++. +++++.+.+.+|+..+.. .||+.|++-.
T Consensus 147 ~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 185 (565)
T 2nxw_A 147 EITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPR 185 (565)
T ss_dssp TSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred hhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECCh
Confidence 1222334553 555666677777776666 8999999973
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=85.81 E-value=4 Score=42.66 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=65.9
Q ss_pred ccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCch
Q 018037 170 GIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSPS 246 (362)
Q Consensus 170 g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~~ 246 (362)
|+-.++ +++|.|+|+. +.-+++++.+...+. -.++++.+++..++||+|++.+.+++.+ .+++. ...+
T Consensus 408 GIaE~~~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq--~~ed 478 (669)
T 2r8o_A 408 GVREFGMTAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQ--PVEQ 478 (669)
T ss_dssp CSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTC--CSSH
T ss_pred chhHHHHHHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccC--CHHH
Confidence 443333 3567777764 122456666655542 2356677899999999999988887643 23331 1223
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
..... .+|++.| .=.|+.++..+++.|++. .++|++|-
T Consensus 479 la~lr-~iP~l~V~~Pad~~E~~~~l~~a~~~--~~~Pv~i~ 517 (669)
T 2r8o_A 479 VASLR-VTPNMSTWRPCDQVESAVAWKYGVER--QDGPTALI 517 (669)
T ss_dssp HHHHH-TSTTCEEECCSSHHHHHHHHHHHHHC--SSSCEEEE
T ss_pred HHHhc-CCCCCEEEecCCHHHHHHHHHHHHHh--CCCcEEEE
Confidence 33211 3555544 446889999999998862 27999984
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=85.61 E-value=1.7 Score=43.66 Aligned_cols=106 Identities=18% Similarity=0.079 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~ 252 (362)
.-+|.|.|.+. ++..++++..|=|++| ..-++..|...++|+|+|+-+-... ++.. ..+. ..|.... .+
T Consensus 51 a~~A~Gyar~t---g~~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~-~~q~-~~d~~~~~~~~ 122 (528)
T 1q6z_A 51 VGIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVE-ALLT-NVDAANLPRPL 122 (528)
T ss_dssp HHHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTT-CTTC-CTTGGGSSTTS
T ss_pred HHHHHHHHHHh---CCCEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccCCC-cccc-cccHHHHHHHh
Confidence 34566776653 4555677777888876 3445777889999999998765432 1111 0011 0122221 11
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
--...++ .+++++.+.+.+|+..+.. .||+.|++-..
T Consensus 123 ~k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 123 VKWSYEP--ASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp CSCEECC--SSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred hHhhhcC--CCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 1122334 4666778888888887766 58999998653
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=1.6 Score=44.35 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-ccc-ccccccCCchHhh--hcC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGT-AEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t-~~~~~~~~~~~~~--~g~ 252 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|.-+-... ++. ...-+ ..|... +.+
T Consensus 61 ~~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q--~~dq~~~~~~~ 132 (568)
T 2c31_A 61 YAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYE--EMDQMNVARPH 132 (568)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTT--CCCHHHHSGGG
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCccc--ccCHHHHHHhh
Confidence 3466666543 4445777777777776 4566778889999999998765432 110 00001 112211 112
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--....+ .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 133 tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (568)
T 2c31_A 133 CKASFRI--NSIKDIPIGIARAVRTAVSGRPGGVYVDLPA 170 (568)
T ss_dssp SSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred hheeeec--CCHHHHHHHHHHHHHHhcCCCCceEEEeCCH
Confidence 2223444 4677788888888887765 6999998853
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=85.34 E-value=1.6 Score=44.29 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-ccc-ccccccCCchHhh--hcC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGT-AEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t-~~~~~~~~~~~~~--~g~ 252 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|+-+-... ++. ...-+ ..|... +.+
T Consensus 59 ~~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q--~~dq~~~~~~~ 130 (564)
T 2q28_A 59 YAAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYE--ELDQMNAAKPY 130 (564)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTT--CCCHHHHHGGG
T ss_pred HHHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccc--cccHHHHHHHh
Confidence 3466766553 3445677777777776 4556777889999999998765432 110 00001 112211 112
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-....+| .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 131 tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 168 (564)
T 2q28_A 131 AKAAFRV--NQPQDLGIALARAIRVSVSGRPGGVYLDLPA 168 (564)
T ss_dssp SSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hheeeec--CCHHHHHHHHHHHHHHHhcCCCceEEEEcCH
Confidence 2223445 4677788888888887775 6999998854
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=85.20 E-value=4.8 Score=42.05 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=67.6
Q ss_pred Cccccc-hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCc
Q 018037 169 HGIVGA-QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSP 245 (362)
Q Consensus 169 ~g~lG~-~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~ 245 (362)
.|+-.+ .+++|.|+|+. +.-++++.++.+-.. ..++.+.+++..++||+|+....++|.+ .+++.. ..
T Consensus 408 ~GIaE~~~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~--~e 478 (663)
T 3kom_A 408 YGVREFGMAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQP--IE 478 (663)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCC--SS
T ss_pred cCccHHHHHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCC--HH
Confidence 455544 34667888874 123566666666542 2456778889999999999887776543 333321 22
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
+.+-. -.+|++.| -=.|+.++..+++.|++. .++|++|-
T Consensus 479 d~a~l-r~iPnl~V~~Pad~~e~~~~l~~A~~~--~~~Pv~ir 518 (663)
T 3kom_A 479 HVPSL-RLIPNLSVWRPADTIETMIAWKEAVKS--KDTPSVMV 518 (663)
T ss_dssp HHHHH-HTSTTCEEECCCSHHHHHHHHHHHHHC--SSCCEEEE
T ss_pred HHHHH-hcCCCcEEEeeCCHHHHHHHHHHHHHh--CCCCEEEE
Confidence 33221 13565554 335888999999998861 28999883
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.12 E-value=2.5 Score=43.46 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhh--cCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi 254 (362)
-+|.|.|.+. .++-.++++..|=|++|- .-++..|..-+.|+|+|+-+-.........-+ ..|.... .+--
T Consensus 79 ~~A~GyAr~t--gg~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q--~~d~~~~~~~~tk 151 (616)
T 2pan_A 79 HMAEGYTRAT--AGNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKEDFQ--AVDIEAIAKPVSK 151 (616)
T ss_dssp HHHHHHHHHS--TTCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTT--CCCHHHHHGGGSS
T ss_pred HHHHHHHHhc--CCCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccccc--ccCHHHHHHHHHH
Confidence 3466666542 133345666778887763 44577788889999998876543221111111 1222221 1222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
....+ .++.++...+++|+..+.. .||+.|++-.
T Consensus 152 ~~~~v--~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 152 MAVTV--REAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp EEEEC--CSGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred hhccc--CCHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 23444 4677888889999888776 5999999864
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=85.01 E-value=4.2 Score=42.89 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=66.1
Q ss_pred Cccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCc
Q 018037 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSP 245 (362)
Q Consensus 169 ~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~ 245 (362)
.|+-.++ +++|.|+|+.. .-++++.++.+ |.+ ..+..+.+++..++||+|+....+++.+ .+++.. ..
T Consensus 453 ~GIaE~~mv~~AaGlA~~~----G~~Pv~~~f~~--F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq~--~e 523 (711)
T 3uk1_A 453 YGVREFGMSAAINGLVLHG----GYKPFGGTFLT--FSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQS--VE 523 (711)
T ss_dssp CCSCHHHHHHHHHHHHHHS----SCEEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCC--SS
T ss_pred eCccHHHHHHHHHHHHHcC----CCEEEEEEhHH--HHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccCC--hh
Confidence 4555544 46778888631 23455565543 332 2456677888999999999987776543 333321 22
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
+.+-. -.+|++.| .=.|+.++..+++.|++. ++|++|-
T Consensus 524 d~a~l-r~iPnl~V~~Pad~~E~~~~l~~Ai~~---~~Pv~ir 562 (711)
T 3uk1_A 524 HVASL-RLIPNLDVWRPADTVETAVAWTYAVAH---QHPSCLI 562 (711)
T ss_dssp HHHHH-HTSTTCEEECCSSHHHHHHHHHHHHHS---SSCEEEE
T ss_pred HHHHH-hcCCCCEEEecCCHHHHHHHHHHHHhc---CCCEEEE
Confidence 33221 13666554 346888999999998874 8999883
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=84.86 E-value=3.5 Score=42.02 Aligned_cols=106 Identities=24% Similarity=0.233 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCcce
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVPG 256 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi~g 256 (362)
+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|.-+-... +++...+......+.. .+--..
T Consensus 64 aAdGyAr~t---G~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~-~~tk~~ 136 (578)
T 3lq1_A 64 FALGLAKAS---KRPVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYG-SHVKDF 136 (578)
T ss_dssp HHHHHHHHH---CCCEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTG-GGSSEE
T ss_pred HHHHHHHhh---CCCEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHh-hheeeE
Confidence 566776654 4556777888888887 3455778889999999888654321 1111000000111111 011112
Q ss_pred EEEe-CCCHHH----HHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 257 LKVD-GMDALA----VKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 257 ~~Vd-G~D~~a----v~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
..|. ..+..+ +..++++|+..+.. .||++|++-.
T Consensus 137 ~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 137 TDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp EECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred eecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 3342 334322 34567777777766 6999999864
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=83.41 E-value=5.8 Score=37.34 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEE-eCCcccccchHHHHHHH-HHh--------CCCCeEEEEEcCCcc-cccccccccCC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALNI-AAL--------WDLPAILVCENNHYG-MGTAEWRAAKS 244 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~-~GDGa~~~G~~~Ealn~-A~~--------~~LPvIfVv~NN~~g-i~t~~~~~~~~ 244 (362)
+++|.|+|++- -++++.+ +++.. + ..++.+.. ++. .++|+|+++. .+++ -+.+.+.+
T Consensus 64 v~~a~G~A~~G-----~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~hs~--- 131 (324)
T 1umd_B 64 VGAALGMAAHG-----LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHHHSQ--- 131 (324)
T ss_dssp HHHHHHHHHHT-----CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGGSSC---
T ss_pred HHHHHHHHHCC-----CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCccch---
Confidence 56788888762 2445543 88886 2 24454532 443 7999998887 3442 22222111
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
.+..- --.+|++.| .-.|+.+.+..++.|+++ ++|++|-
T Consensus 132 ~~~a~-~~~iP~~~V~~P~d~~e~~~~l~~a~~~---~~Pv~i~ 171 (324)
T 1umd_B 132 SPEAH-FVHTAGLKVVAVSTPYDAKGLLKAAIRD---EDPVVFL 171 (324)
T ss_dssp CCHHH-HHTSTTCEEEECCSHHHHHHHHHHHHHC---SSCEEEE
T ss_pred hHHHH-HhcCCCCEEEEeCCHHHHHHHHHHHHhc---CCCEEEE
Confidence 12211 112444333 456899999999999864 8999884
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
|---|
Probab=83.38 E-value=5.7 Score=37.41 Aligned_cols=97 Identities=18% Similarity=0.086 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEE-eCCcccccchHHHHHH-HHHh--------CCCCeEEEEEcCCcc-cccccccccC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALN-IAAL--------WDLPAILVCENNHYG-MGTAEWRAAK 243 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~-~GDGa~~~G~~~Ealn-~A~~--------~~LPvIfVv~NN~~g-i~t~~~~~~~ 243 (362)
.+.+|+|+|++ | -++++++ ++++. + ..++.+. -++. .++|+|+++. .+++ -+.+.+.+
T Consensus 62 ~v~~a~G~A~~----G-~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~hs~-- 130 (324)
T 1w85_B 62 IGGLAIGLALQ----G-FRPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPELHSD-- 130 (324)
T ss_dssp HHHHHHHHHHT----T-CEEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTTSSC--
T ss_pred HHHHHHHHHhC----C-CEEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCcccc--
Confidence 45677787764 2 2344433 88887 2 2444453 2444 7999998876 3432 22222211
Q ss_pred CchHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
.+. ..--.+|++.| .-.|+.+.+..++.|+++ ++|++|-
T Consensus 131 -~~~-a~~~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i~ 170 (324)
T 1w85_B 131 -SLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIRD---NDPVIFL 170 (324)
T ss_dssp -CCH-HHHTTSTTCEEECCSSHHHHHHHHHHHHHS---SSCEEEE
T ss_pred -cHH-HHHccCCCCEEEeeCCHHHHHHHHHHHHHc---CCCEEEE
Confidence 122 21123555443 456899999999998864 8999884
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.73 E-value=5.5 Score=41.46 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCchHhhhcCC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~~~~~~g~g 253 (362)
+++|.|+|+. |.-++++..+.=.+. -.++++.+++..++||+|++.+.+++.+ .+++ + ...|+.... .
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH-q-~~edla~lr-~ 479 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH-Q-PVEHLMSLR-A 479 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHHHHHH-T
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc-c-cHHHHHHhc-C
Confidence 3577787765 223556665533331 2456688899999999999988887653 2333 2 122333211 2
Q ss_pred cceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 254 VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 254 i~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
+|++.| .=.|+.+++.+++.|++. .++|++|-.
T Consensus 480 iP~l~V~~Pad~~E~~~~l~~A~~~--~~~Pv~i~~ 513 (651)
T 2e6k_A 480 MPNLFVIRPADAYETFYAWLVALRR--KEGPTALVL 513 (651)
T ss_dssp STTCEEECCSSHHHHHHHHHHHHHC--CSSCEEEEC
T ss_pred CCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEE
Confidence 555544 446889999999998873 268998854
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=81.81 E-value=5.9 Score=41.17 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=67.5
Q ss_pred Cccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCc
Q 018037 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSP 245 (362)
Q Consensus 169 ~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~ 245 (362)
.|+-.++ +++|.|+|+. +.-++++.++.+-+ + ..++.+.+++..++||+|+....++|.+ .+++.. ..
T Consensus 387 ~GIaE~~~v~~a~GlA~~----gG~~P~~~~f~~F~--~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~--~e 457 (632)
T 3l84_A 387 FGIREHAMAAINNAFARY----GIFLPFSATFFIFS--E-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQP--IE 457 (632)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSC--SS
T ss_pred eCccHHHHHHHHHHHHHc----CCCEEEEEecHHHH--H-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCC--Hh
Confidence 4555443 3677888875 12356666665543 2 3556777889999999999988777543 333322 22
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
+++-. -.+|++.| -=.|+.++..+++.|++. ++|++|-.
T Consensus 458 d~a~l-r~iP~l~V~~P~d~~e~~~~l~~A~~~---~~Pv~ir~ 497 (632)
T 3l84_A 458 QLSTF-RAMPNFLTFRPADGVENVKAWQIALNA---DIPSAFVL 497 (632)
T ss_dssp HHHHH-HHSSSCEEECCSSHHHHHHHHHHHHHC---SSCEEEEC
T ss_pred HHHHH-hcCCCCEEEecCCHHHHHHHHHHHHhC---CCCEEEEE
Confidence 33221 13555544 335888999999999874 89998843
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=5.6 Score=41.63 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=65.8
Q ss_pred Cccccchh-HHHHHHHHHHhhCCCCC-eEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCC
Q 018037 169 HGIVGAQI-PLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKS 244 (362)
Q Consensus 169 ~g~lG~~~-p~A~G~A~A~k~~~~~~-vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~ 244 (362)
.|+-.+++ ++|.|+|+. |.-+ +++..+.+-+. -.++++.+++..++||+|++...+++.+ .+++ +. .
T Consensus 414 ~gIaE~~~vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH-q~-~ 484 (680)
T 1gpu_A 414 YGIREHAMGAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH-QP-I 484 (680)
T ss_dssp CCSCHHHHHHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-CC-S
T ss_pred CCccHHHHHHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc-CC-H
Confidence 34444433 567787764 2124 56666644432 2456678899999999999987777643 3333 21 2
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
.+.+.. -.+|++.| -=.|+.++..+++.|++. .++|++|-
T Consensus 485 edla~l-r~iP~l~V~~Pad~~e~~~~l~~A~~~--~~~Pv~i~ 525 (680)
T 1gpu_A 485 ETLAHF-RSLPNIQVWRPADGNEVSAAYKNSLES--KHTPSIIA 525 (680)
T ss_dssp SHHHHH-HTSSSCEEECCCSHHHHHHHHHHHHHC--SSCCEEEE
T ss_pred HHHHHh-cCCCCCEEEecCCHHHHHHHHHHHHHh--CCCcEEEE
Confidence 233221 13566554 346889999999998862 27999984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 362 | ||||
| d2ozla1 | 361 | c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de | 2e-77 | |
| d1umda_ | 362 | c.36.1.11 (A:) Branched-chain alpha-keto acid dehy | 2e-63 | |
| d2bfda1 | 395 | c.36.1.11 (A:6-400) Branched-chain alpha-keto acid | 2e-63 | |
| d1w85a_ | 365 | c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd | 5e-63 | |
| d1qs0a_ | 407 | c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B | 5e-61 |
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Score = 240 bits (612), Expect = 2e-77
Identities = 173/318 (54%), Positives = 225/318 (70%), Gaps = 4/318 (1%)
Query: 44 PFTSHQC-EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEA 102
H+ E P + T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA
Sbjct: 11 KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEA 70
Query: 103 VAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD 162
+G+EAGI D +ITAYR H RG ++ E+ +EL GRK GC+ GKGGSMH Y K
Sbjct: 71 CCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK- 129
Query: 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP 222
FYGG+GIVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N+AALW LP
Sbjct: 130 -NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 188
Query: 223 AILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKN 281
I +CENN YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A +FA +
Sbjct: 189 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 248
Query: 282 GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKD 341
GP+++E+ TYRYHGH MSDPG +YRTR+EI VR + DPI ++ ++ +LA+ +ELK+
Sbjct: 249 GPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 308
Query: 342 IEKEVRKEVDDAIAKAKE 359
I+ EVRKE++DA A
Sbjct: 309 IDVEVRKEIEDAAQFATA 326
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Score = 204 bits (520), Expect = 2e-63
Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 6/308 (1%)
Query: 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK-K 114
++ ++L +R M R ++ L + F G EA + + I
Sbjct: 25 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGF 83
Query: 115 DSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGA 174
D + YRDH L G L E+ +++ K + G+ H K F+ + +
Sbjct: 84 DWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIAS 143
Query: 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM 234
+P G A + K + V +GDGA ++G + +N AA+ PA+ + ENN Y +
Sbjct: 144 HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAI 203
Query: 235 GTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMDTY 291
SP+ + +PG VDGMD LA K A E A + GP ++E+ Y
Sbjct: 204 SVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVY 263
Query: 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVD 351
RY HS +D S YR ++E++ R ++DPI R R+ + A L E+ +D+ +E+R E++
Sbjct: 264 RYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELE 322
Query: 352 DAIAKAKE 359
+ +A+E
Sbjct: 323 RGLKEAEE 330
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Score = 205 bits (522), Expect = 2e-63
Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 4/310 (1%)
Query: 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112
PS +++L ++ M + M+ + + + Y G+E +G A +
Sbjct: 41 PSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALD 99
Query: 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172
D + R+ + R L ++ G G+ +H+ K+ F +
Sbjct: 100 NTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 159
Query: 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232
QIP G A+A K + V +G+GAA++G N AA + P I C NN Y
Sbjct: 160 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY 219
Query: 233 GMGTAEWRAAKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMD 289
+ T + RG + ++VDG D AV A K A+ A+ P ++E
Sbjct: 220 AISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAM 279
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKE 349
TYR S SD S +R+ DE++ ++ PI R+R +L+ E++ K K+ R++
Sbjct: 280 TYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRK 339
Query: 350 VDDAIAKAKE 359
V +A +A+
Sbjct: 340 VMEAFEQAER 349
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Score = 203 bits (516), Expect = 5e-63
Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 13/310 (4%)
Query: 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112
E + ++L R+M R ++ + SL + + GF GQEA I +
Sbjct: 32 EEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALE 90
Query: 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172
K+D I+ YRD + G L + F G G +G ++ I+
Sbjct: 91 KEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVL---------PPQIII 141
Query: 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232
GAQ G+A K + V GDG +QG +E +N A + PAI V +NN +
Sbjct: 142 GAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRF 201
Query: 233 GMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMD 289
+ T + + + ++ +PG++VDGMD LAV A K A+E A+ GP ++E
Sbjct: 202 AISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETL 261
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKE 349
+RY H+MS T E+ ++DP+ R RK + A L +E+E ++ ++ ++E
Sbjct: 262 CFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEE 321
Query: 350 VDDAIAKAKE 359
+ +AI KA E
Sbjct: 322 IKEAIKKADE 331
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Score = 199 bits (506), Expect = 5e-61
Identities = 79/304 (25%), Positives = 131/304 (43%), Gaps = 6/304 (1%)
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIIT 119
P+ L R M R + + K + F G+EA+ G + + D
Sbjct: 72 DPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFP 130
Query: 120 AYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLG 179
YR + R +L+E+ +L+ + G+ + + +++GF+ G + Q
Sbjct: 131 TYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQA 190
Query: 180 CGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW 239
G A A D + A GDGA + AL A ++ P IL NN + + T +
Sbjct: 191 VGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQA 250
Query: 240 RAAKSPSYYKR---GDYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMDTYRYHG 295
A + + G + L+VDG D +AV A ++A E A + GP ++E TYR
Sbjct: 251 IAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGP 310
Query: 296 HSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIA 355
HS SD S YR D+ S DPI R+++ ++ +E+E + E V A
Sbjct: 311 HSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQK 369
Query: 356 KAKE 359
+A++
Sbjct: 370 EAEQ 373
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 99.78 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 99.78 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.77 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 99.77 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 99.74 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.72 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.71 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.7 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.68 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.63 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.61 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.61 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.57 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.56 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 99.56 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.55 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 97.5 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 95.17 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 94.7 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 94.66 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 94.66 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 94.58 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 94.53 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 94.28 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 94.27 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 93.93 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 93.75 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 91.53 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 90.82 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 88.44 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 87.62 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 85.87 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 85.22 | |
| d2bfdb1 | 203 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 85.13 | |
| d1ik6a1 | 191 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 82.38 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 80.88 |
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-84 Score=637.68 Aligned_cols=327 Identities=54% Similarity=0.941 Sum_probs=315.3
Q ss_pred CCcceeeeCCCCcccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcC
Q 018037 33 DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGI 111 (362)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l 111 (362)
++.+.|++++ ++.+|+++. |+..+.||+|+|+++||.|+++|+||+++.++|++|+|.||+|++.||||+++|++.+|
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l 79 (361)
T d2ozla1 1 FANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGI 79 (361)
T ss_dssp CCSEEEEECC-CCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTS
T ss_pred CCCCceeecc-cccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhC
Confidence 3667899998 999999986 77888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCC
Q 018037 112 TKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD 191 (362)
Q Consensus 112 ~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~ 191 (362)
+++|+++++||+|+++|++|+++.++|+|++|+.+|+++|++|+||++.+ |+++.++++|.++|+|+|+|+|.|++++
T Consensus 80 ~~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~--~~~~~~~ivg~~~p~A~G~A~a~k~~~~ 157 (361)
T d2ozla1 80 NPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGK 157 (361)
T ss_dssp CTTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHHTC
T ss_pred CccCEecccccchheeeeecccchhhhhhccCCccccccccccccccccc--cccCccccccccchhHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999875 7899999999999999999999999999
Q ss_pred CCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcCCcceEEEeCCCHHHHHHHH
Q 018037 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQAC 271 (362)
Q Consensus 192 ~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~gi~g~~VdG~D~~av~~a~ 271 (362)
+++++|++|||++++|.|||+||+|++|+||+||||+||+|+++|+...++...+++.+++++++++|||+|+++|++++
T Consensus 158 ~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~vdGnD~~av~~a~ 237 (361)
T d2ozla1 158 DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREAT 237 (361)
T ss_dssp CCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHH
T ss_pred CCeEEEEecCCCccCcchhhhhhhhhhccCceEEEEEeCCcccCCCchhccccccccccccccceEEeccCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888888999999999999999999999
Q ss_pred HHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 018037 272 KFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEV 350 (362)
Q Consensus 272 ~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v 350 (362)
++|++++|+ +||+|||+.|||++||+.+|++..||+++|+++|++++|||.+++++|+++|++|++++++|+++++++|
T Consensus 238 ~~A~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V 317 (361)
T d2ozla1 238 RFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEI 317 (361)
T ss_dssp HHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEEeeecCCCCcccccccccCCHHHHHhhhhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999998889999999998766899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 018037 351 DDAIAKAKEGRQ 362 (362)
Q Consensus 351 ~~a~~~A~~~p~ 362 (362)
++|+++|+++|.
T Consensus 318 ~~A~~~A~~sp~ 329 (361)
T d2ozla1 318 EDAAQFATADPE 329 (361)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhCCC
Confidence 999999999984
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.2e-83 Score=626.03 Aligned_cols=306 Identities=28% Similarity=0.462 Sum_probs=296.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCC-CEEEcCchhHHHHHHcCCC
Q 018037 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGT 133 (362)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~-D~v~~~yR~h~~~l~rG~~ 133 (362)
..+.+|+|+|+++||+|+++|.||+++..||++|++ ||+|++.||||++||++.+|+++ |+++++||+|+++|++|++
T Consensus 24 ~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~-~~~~~~~GqEA~~vg~~~al~~~~D~~~~~yR~h~~~la~G~~ 102 (362)
T d1umda_ 24 FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIP 102 (362)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ceeeCCCCHHHHHHHHHHHcCCCCCeEEeccccHHHHHHHHhh
Confidence 357899999999999999999999999999999999 89999999999999999999986 9999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHH
Q 018037 134 LLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL 213 (362)
Q Consensus 134 ~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Eal 213 (362)
+.++|+|++|+.+|+++|+|||||+++++.+|++.+++||.++|+|+|+|+|.|+++.+.++||++|||+++||.|||+|
T Consensus 103 ~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Eal 182 (362)
T d1umda_ 103 LKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGI 182 (362)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHH
T ss_pred HHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcccccceeeeeccCCcccCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 214 NIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 214 n~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
|+|++|+||+||||+||+|+++|+...++..+++..++ ||+|+++|||+|+++|++++++|++++|+ +||+|||+.|
T Consensus 183 n~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~t 262 (362)
T d1umda_ 183 NFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRV 262 (362)
T ss_dssp HHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred HHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHHHHHhcCCCEEEEccc
Confidence 99999999999999999999999999888777787764 99999999999999999999999999999 8999999999
Q ss_pred ecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 291 YRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 291 yR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
||+.||+.+|++..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++++++|+++|.
T Consensus 263 yR~~gHs~~Dd~~~YR~~~Ei~~w~-~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~a~~~A~~~p~ 333 (362)
T d1umda_ 263 YRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGP 333 (362)
T ss_dssp CCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred ccccCCCccccchhhcchhhhHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999988899999999998 6999999999999999999999999999999999999999999874
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.4e-82 Score=625.10 Aligned_cols=309 Identities=25% Similarity=0.397 Sum_probs=278.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCC
Q 018037 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (362)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~ 132 (362)
|...+.+|+|+|+++||.|+++|+||+++.++|++|+|.||+| +.||||++||++++|+++||++++||+|+++|++|+
T Consensus 41 ~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~~~-~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~ 119 (395)
T d2bfda1 41 PSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMT-NYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDY 119 (395)
T ss_dssp GGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCC-CTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccC-CCChHHHHHHHHHHcCCCCeeccccchhHhhhhhhC
Confidence 6678899999999999999999999999999999999987766 679999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHH
Q 018037 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (362)
Q Consensus 133 ~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ea 212 (362)
|+..+|+|++|+.+|+++|+|||||+++++.|+++.++++|.++|+|+|+|+|.|+++.++++||++|||++++|.|||+
T Consensus 120 ~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea 199 (395)
T d2bfda1 120 PLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 199 (395)
T ss_dssp CHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHH
T ss_pred CHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhhhcCcccccccccCCCCccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 213 ln~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
||+|++|+||+||||+||+|+++|+...++...+++.++ ||+++++|||+|+++|++++++|++++|+ +||+|||+.
T Consensus 200 lN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~ 279 (395)
T d2bfda1 200 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAM 279 (395)
T ss_dssp HHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEe
Confidence 999999999999999999999999999888888888865 99999999999999999999999999999 999999999
Q ss_pred EecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 290 tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
|||+.||+.+|++..||+++|++.|++..|||.+++++|+++|++|++++++|+++++++|++|+++|+++|.
T Consensus 280 TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~ 352 (395)
T d2bfda1 280 TYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPK 352 (395)
T ss_dssp CCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCB
T ss_pred eecCCCCCCcCCcccccCHHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999988899999999999853359999999999999999999999999999999999999999883
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.1e-81 Score=624.81 Aligned_cols=304 Identities=27% Similarity=0.382 Sum_probs=292.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCH
Q 018037 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134 (362)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~ 134 (362)
..+.+|+|+|+++||.|+++|.||+++..+++||++ ||+|++.||||++||++.+|+++||+|++||+|+++|++|+++
T Consensus 67 ~~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i-~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~ 145 (407)
T d1qs0a_ 67 WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSL 145 (407)
T ss_dssp GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCCCCChHHHHHHHHHhCCCCCEEEecccCHHHHHHHHhhH
Confidence 456899999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHH
Q 018037 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (362)
Q Consensus 135 ~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn 214 (362)
.++|+|++|+.+|+++|+|||||++.++.||++.++++|.++|.|+|+|+|.|+++.++++||++|||++++|.|||+||
T Consensus 146 ~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN 225 (407)
T d1qs0a_ 146 VEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALT 225 (407)
T ss_dssp HHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhccCcceecccccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEEEcCCcccccccccccC-CchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 215 IAALWDLPAILVCENNHYGMGTAEWRAAK-SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 215 ~A~~~~LPvIfVv~NN~~gi~t~~~~~~~-~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
+|++|+|||||||+||+|+|+|+...+.. ..+++.+ +||+++++|||+|+++|++++++|++++|+ +||+|||+.|
T Consensus 226 ~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~T 305 (407)
T d1qs0a_ 226 FAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVT 305 (407)
T ss_dssp HHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEEC
T ss_pred HHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccHHHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 99999999999999999999998876543 4567776 599999999999999999999999999999 8999999999
Q ss_pred ecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018037 291 YRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEG 360 (362)
Q Consensus 291 yR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~ 360 (362)
||+.|||++|+++.||+++|++.|+ ++|||.+|+++|++.|+||++++++|+++++++|++|+++|++.
T Consensus 306 yR~~gHs~sDD~~~YR~~~E~~~w~-~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~~ 374 (407)
T d1qs0a_ 306 YRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQY 374 (407)
T ss_dssp CCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ecCCCCCccccccccCCHHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888999999999997 69999999999999999999999999999999999999999864
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2.4e-77 Score=587.45 Aligned_cols=299 Identities=29% Similarity=0.461 Sum_probs=277.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCC
Q 018037 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (362)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~ 132 (362)
|...+.+|+|+|+++||.|+++|.||+++.+++++|++ ||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 32 ~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~i-g~~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~hg~~la~G~ 110 (365)
T d1w85a_ 32 EEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGL 110 (365)
T ss_dssp GGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTC
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ccccCCCChHHHHHHHHHhCCCcCEeeecccchheeeecCC
Confidence 45667899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHH
Q 018037 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (362)
Q Consensus 133 ~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ea 212 (362)
++.++|++++|+..+.+.|+ +.|+++.++++|.++|+|+|+|+|.|+++.++++||++|||++++|.|||+
T Consensus 111 ~~~~~~~~~~G~~~g~~~~~---------~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea 181 (365)
T d1w85a_ 111 PLYQAFLFSRGHFHGNQIPE---------GVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 181 (365)
T ss_dssp CHHHHHHHHHTCGGGGCCCT---------TCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHH
T ss_pred CHHHHHHhhCCCCCccCCCC---------CceeeccccccCccccchhhHHhhhhhcccCCceeeeccCCcccchhHHHH
Confidence 99999999998876655443 346788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 213 ln~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
||+|++|+||+||||+||+|+++|+...++...+++.++ ||+++++|||+|+.+|+++++.|++++|+ +||+|||+.
T Consensus 182 lN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A~~~~R~g~gP~lie~~ 261 (365)
T d1w85a_ 182 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETL 261 (365)
T ss_dssp HHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred HHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEEecchhHHHHHHHHHHHHHhhcCCccEEEEee
Confidence 999999999999999999999999999888777888765 99999999999999999999999999999 899999999
Q ss_pred EecCCCCCCCC-CCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 290 TYRYHGHSMSD-PGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 290 tyR~~GHs~~D-~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
|||+.|||.+| ++..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++|+++|+++|.
T Consensus 262 tyR~~gHs~~dd~~~~YR~~eEi~~w~-~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~~A~~~A~~sP~ 334 (365)
T d1w85a_ 262 CFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPK 334 (365)
T ss_dssp CCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cccccccCCcCCcccccCChHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999876 457899999999997 6999999999999999999999999999999999999999999984
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=8.7e-19 Score=168.18 Aligned_cols=151 Identities=23% Similarity=0.221 Sum_probs=120.4
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|+++|.|+|+|+|.|+.+ .+..|+|++|||++++|++|||+++|+.++|. +|+|++||+
T Consensus 106 ~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~ 185 (331)
T d2r8oa2 106 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 185 (331)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhh
Confidence 3677889999999999999999988642 36789999999999999999999999999997 678999999
Q ss_pred cccccccccccCCchHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC--CCCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS--DPGSTYR 306 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~--D~~~~YR 306 (362)
+.+....+.... .++.. ++||...+ .+||+|..++.+|+..|... .++|++|.+.|.+.+|.+.. ++..++.
T Consensus 186 ~~~~g~~~~~~~-~~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~~~--~~kP~~Ii~~TikGkG~~~~e~~~~~Hg~ 262 (331)
T d2r8oa2 186 ISIDGHVEGWFT-DDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV--TDKPSLLMCKTIIGFGSPNKAGTHDSHGA 262 (331)
T ss_dssp EETTEEGGGTCC-CCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSS
T ss_pred hccccccccccc-hhHHHHHHHcCCeeecccccchHHHHHHHHHHHHhh--cCCCccceeeeeeecCCcccCCCchhhcC
Confidence 987766665443 44544 35888887 47999999999988887642 27899999999999998743 2323333
Q ss_pred --ChhhHHhHhh
Q 018037 307 --TRDEISGVRQ 316 (362)
Q Consensus 307 --~~~e~~~~~~ 316 (362)
+.+|++..++
T Consensus 263 ~l~~~e~~~ak~ 274 (331)
T d2r8oa2 263 PLGDAEIALTRE 274 (331)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 5577776543
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=99.78 E-value=2.8e-18 Score=164.97 Aligned_cols=150 Identities=21% Similarity=0.219 Sum_probs=115.9
Q ss_pred CcccCCccccchhHHHHHHHHHHhh----------CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKY----------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~----------~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++..++|++|++++.|+|+|+|.|+ +.-+..|+|++|||++++|++|||+++|+.++|+ +|+|++||+.
T Consensus 108 gve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~ 187 (336)
T d1r9ja2 108 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI 187 (336)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred cccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHHhhcCCEEEEEecccc
Confidence 5667799999999999999999875 2336789999999999999999999999999998 5788889988
Q ss_pred ccccccccccCCchHhh--hcCCcceEEEeCC--CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC---CCC
Q 018037 233 GMGTAEWRAAKSPSYYK--RGDYVPGLKVDGM--DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG---STY 305 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG~--D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~---~~Y 305 (362)
.+....+... ..++.. ++||...+.|||+ |...+..++..+.. .+++|++|.++|.+++|.++.+.. ...
T Consensus 188 ~idg~~~~~~-~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~--~~~kP~~Ii~kTiiG~G~~~e~~~~~Hg~p 264 (336)
T d1r9ja2 188 SIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA--TKGKPKMIVQTTTIGFGSSKQGTEKVHGAP 264 (336)
T ss_dssp CSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH--CCSSCEEEEEECCTTTTSTTTTSGGGTSSC
T ss_pred cccccccccc-hhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhh--ccCCCccceEEEEEeecccccCCcceeecC
Confidence 8766554433 345555 4689889999874 45555555544433 236899999999999998866542 124
Q ss_pred CChhhHHhHhh
Q 018037 306 RTRDEISGVRQ 316 (362)
Q Consensus 306 R~~~e~~~~~~ 316 (362)
.+.||++++++
T Consensus 265 l~~eEi~~~k~ 275 (336)
T d1r9ja2 265 LGEEDIANIKA 275 (336)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 57889988764
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.77 E-value=5.6e-19 Score=161.36 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=111.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++.++ ..| |.+|+++++|+++||.|| .|++.....
T Consensus 49 ~~~g~mG~~lp~aiGa~~a~----p~~~vv~i~GDGsf~m~-~~e-L~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~ 122 (229)
T d2djia3 49 PLFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT-YPD-VVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKN 122 (229)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH-GGG-HHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSC
T ss_pred CCcccccccchhhhhhhhhc----ccccccccccccccccc-cch-hhhhhcccCCceEEEeCCchhhhhhHHHHhhcCC
Confidence 46799999999999999986 78899999999998764 444 999999999986655555 477532221
Q ss_pred ---cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC----CCCCCCCCCCCCChhh
Q 018037 240 ---RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH----GHSMSDPGSTYRTRDE 310 (362)
Q Consensus 240 ---~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~----GHs~~D~~~~YR~~~e 310 (362)
.....+||.+ +++|+++++|+ +++++.+++++|++..+.++|+|||+.+.+-. .+...|+ ...++++
T Consensus 123 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~A~~~~~~~~p~lIev~v~~~~~~p~~~~~~~~--~~~~~~~ 198 (229)
T d2djia3 123 LFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAGHTVVIDCKITQDRPIPVETLKLDS--KLYSEDE 198 (229)
T ss_dssp CCSCBCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHTTCCEEEEEECCSCCCCCTTSCTTCT--TTSCHHH
T ss_pred CCcCcCCCCChhhhhhccCccEEEEe--cHHHhHHHHHHHHHhcCCCCeEEEEEEeCCCCCCCccccccCc--cccCHHH
Confidence 1224578887 46999999997 68899999999997544489999999998743 2223343 2445666
Q ss_pred HHhHhhcCCH--HHHHHHHHHHcCC
Q 018037 311 ISGVRQERDP--IERIRKLILAHDL 333 (362)
Q Consensus 311 ~~~~~~~~DP--i~~~~~~L~~~g~ 333 (362)
++...++.+. +..|++.|.+.|+
T Consensus 199 ~~~~~e~~~~~~~~p~~~~le~~g~ 223 (229)
T d2djia3 199 IKAYKERYEAANLVPFREYLEAEGL 223 (229)
T ss_dssp HHHHHHHTTCTTCCCHHHHHHHTTC
T ss_pred HHHHHHhcccccCCchHHHHHHcCc
Confidence 5543221111 2335777777764
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=2.2e-17 Score=158.59 Aligned_cols=151 Identities=22% Similarity=0.232 Sum_probs=113.6
Q ss_pred CCcccCCccccchhHHHHHHHHHHhh----------CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKY----------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~----------~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|++++.|+|+|+|.|+ ...++.|+|++|||++++|+.|||+.+|+.++|. +|+|+++|+
T Consensus 107 pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~ 186 (335)
T d1gpua1 107 PGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNK 186 (335)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEeccc
Confidence 36777899999999999999999885 3457889999999999999999999999999997 689999999
Q ss_pred cccccccccccCCchHhh--hcCCcceEEEeCC--CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC-CCCC
Q 018037 232 YGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGM--DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG-STYR 306 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG~--D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~-~~YR 306 (362)
..+..+.+.... .++.+ ++||...+.|||+ |...+..++..+.. .+++|++|.+.|.+.+|..+.+.. .++.
T Consensus 187 ~~~dg~~~~~~~-~~~~~~f~a~GW~vi~vdg~~~d~~~~~~~~~~~~~--~~~KPt~Iia~TikGkGs~~e~~~~~Hg~ 263 (335)
T d1gpua1 187 ITIDGATSISFD-EDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL--SKDKPTLIKMTTTIGYGSLHAGSHSVHGA 263 (335)
T ss_dssp EETTEEGGGTCC-CCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH--CTTSCEEEEEECCTTTTSTTTTSGGGSSS
T ss_pred cccccccccccc-CCHHHHHHhCCCcEEEEcCCchhHHHHHHHHhhhhc--ccCCCcceEEeeccCCcCcccCchhHHhh
Confidence 987766554443 34554 3578888999754 55555555544443 127899999999999995543322 1222
Q ss_pred --ChhhHHhHhh
Q 018037 307 --TRDEISGVRQ 316 (362)
Q Consensus 307 --~~~e~~~~~~ 316 (362)
+.+|++..++
T Consensus 264 ~l~~eei~~~k~ 275 (335)
T d1gpua1 264 PLKADDVKQLKS 275 (335)
T ss_dssp CCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 5566665543
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=99.74 E-value=3.9e-16 Score=149.91 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=115.8
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhC----------CCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYS----------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~----------~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|++++.|+|+|+|.|+. ..+..|+|++|||++++|++|||+.+|+.++|. +|+|+++|+
T Consensus 111 pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~ 190 (338)
T d1itza1 111 PGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNH 190 (338)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhc
Confidence 367778999999999999999998752 346789999999999999999999999999997 688999999
Q ss_pred cccccccccccCCchHhh--hcCCcceEEEeCC--CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC-C-CCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGM--DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS-D-PGSTY 305 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG~--D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~-D-~~~~Y 305 (362)
..+....+... ..++.. ++||...+.|+|+ |.+++..+++.|... +++|++|.+.|...+|-+.. + +..++
T Consensus 191 ~~~dg~~~~~~-~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~~--~~kPt~Iia~TikGkG~~~~e~~~~~Hg 267 (338)
T d1itza1 191 ISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV--TDKPTLIKVTTTIGFGSPNKANSYSVHG 267 (338)
T ss_dssp EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTS
T ss_pred ccccccccccc-CCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHHc--cCCCceeEeecCcccCcCccCCCcchhh
Confidence 88776655433 345555 3688888987553 678888877776542 27899999999999998643 2 33344
Q ss_pred C--ChhhHHhH
Q 018037 306 R--TRDEISGV 314 (362)
Q Consensus 306 R--~~~e~~~~ 314 (362)
. +.+|++..
T Consensus 268 ~~l~~ee~~~a 278 (338)
T d1itza1 268 SALGAKEVEAT 278 (338)
T ss_dssp SCCCHHHHHHH
T ss_pred ccCCHHHHHHH
Confidence 4 45666653
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=4.7e-18 Score=149.83 Aligned_cols=115 Identities=27% Similarity=0.426 Sum_probs=89.5
Q ss_pred cccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEE-EEEcCCccccccccc---
Q 018037 165 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAIL-VCENNHYGMGTAEWR--- 240 (362)
Q Consensus 165 ~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIf-Vv~NN~~gi~t~~~~--- 240 (362)
+.++.|.||+++|.|+|+++|. +++.|||+.|||++.+. ..| |.+++++++|+++ |++||+|++......
T Consensus 55 ~~~~~g~mG~~~p~AiGa~la~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~~ 128 (183)
T d1q6za3 55 YFCAAGGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS-ISA-LWTAAQYNIPTIFVIMNNGTYGALRWFAGVLE 128 (183)
T ss_dssp EECTTCCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT-GGG-HHHHHHHTCCCEEEEEECSBCHHHHHHHHHHT
T ss_pred ccccCCCcccchhHHHhhhhhc----cccceEEeccccccccc-cHH-HHHHHHhCCCEEEEEEeccccchhhhhhhccc
Confidence 3455688999999999999986 68899999999998763 445 8899999999865 555666886432111
Q ss_pred -------ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 241 -------AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 241 -------~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
....++|.+ +++|+++.+|+ +++++.+++++|++. +||+|||++|
T Consensus 129 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lieV~T 182 (183)
T d1q6za3 129 AENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALSA---KGPVLIEVST 182 (183)
T ss_dssp CCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHTC---SSCEEEEEEB
T ss_pred ccCcccccCCCccHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHhC---CCcEEEEEEe
Confidence 123457776 45999999996 899999999888753 9999999988
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.71 E-value=4.3e-18 Score=155.36 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=91.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++.+. +.| |.+|+++++|+++||.|| .|++.....
T Consensus 52 ~~~g~mG~glpaAiGa~la~----p~~~Vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~~~~ 125 (228)
T d2ez9a3 52 NLFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT-MQD-LATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQN 125 (228)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH-GGG-HHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSS
T ss_pred cccccccccchhhhhhhhhh----ccceeEeecCCcccccc-chh-hhhhccccCceEEEEeccccchhhhhhhhhcccC
Confidence 46789999999999999986 78899999999998763 455 999999999987665555 477532211
Q ss_pred c----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 240 R----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 240 ~----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
+ ....+||.+ +++|+++++|+ ++.++..++++|... .+++|+|||+.+.+-.
T Consensus 126 ~~~~~~l~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~al-~~~~p~lIev~vd~d~ 183 (228)
T d2ez9a3 126 DFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKAI-AQHEPVLIDAVITGDR 183 (228)
T ss_dssp CCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHHH-TTTSCEEEEEECCCCC
T ss_pred CcccccccCccHHhhccccccceEEeC--CHHHHHHHHHHHHHH-cCCCeEEEEEEECCCC
Confidence 1 123578877 45999999996 667888888876532 2389999999987754
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.70 E-value=1.3e-17 Score=149.94 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=92.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE-cCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~-NN~~gi~t~~~------ 239 (362)
++.|.||+++|.|+|+++|. +++.|||++|||++.+. +.| |.+|++++||+++||. |++|++....+
T Consensus 49 ~~~g~mG~glpaaiGa~~A~----p~~~Vi~i~GDGsf~m~-~~E-l~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~~~ 122 (208)
T d1ybha3 49 GGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN-VQE-LATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKA 122 (208)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT-TTH-HHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTT
T ss_pred cccccchhhhhhHHHHHhcC----CCCcEEEEccCCchhhh-hhh-HHHHHHhCCCEEEEEEeccccccceehhhhcccc
Confidence 45689999999999999986 78899999999998764 455 8899999999865554 55587643211
Q ss_pred ------------cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 240 ------------RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 240 ------------~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
.....+||.+ +++|+++++|+ +++++.+++++|++. ++|+|||+.+.+-.
T Consensus 123 ~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~id~~~ 186 (208)
T d1ybha3 123 NRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLDT---PGPYLLDVICPHQE 186 (208)
T ss_dssp CCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHHS---SSCEEEEEECCTTC
T ss_pred cccccccccccccCCCCCCHHHhhccCCceEEEcC--CHHHHHHHHHHHHhC---CCCEEEEEEECCCC
Confidence 0112367876 56999999996 899999999999864 99999999997643
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.68 E-value=2.9e-17 Score=146.57 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=89.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|.||+++|.|+|+++|. +++.|||+.|||++.+. ..| |.+++++++|+++||.|| .|++....+
T Consensus 59 ~~~g~mG~~lp~aiGa~~a~----p~~~Vv~i~GDGsf~~~-~~e-l~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 132 (198)
T d2ihta3 59 AGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN-SSD-LETIARLNLPIVTVVVNNDTNGLIELYQNIGHHR 132 (198)
T ss_dssp SSSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT-GGG-HHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSS
T ss_pred CCcccchhHHHHHHHHhhhh----cccceEeeccccccccc-chh-hhhhhhhhhhhhHHHhhccccceEeeeecccccc
Confidence 34689999999999999986 78899999999998663 444 889999999987655555 577532211
Q ss_pred -----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.|.+
T Consensus 133 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~vd~ 187 (198)
T d2ihta3 133 SHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAEL---GRPFLIEVPVNY 187 (198)
T ss_dssp CCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHTS---SSCEEEEEEBCC
T ss_pred ccccccccCCcchhhhccccCceEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEcCC
Confidence 11245788874 5999999996 788999888888754 999999999854
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=3e-16 Score=142.87 Aligned_cols=117 Identities=26% Similarity=0.357 Sum_probs=93.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.++||+++|.|+|+++|. +++.||++.|||++.+. ..| |.+|+++++|+++||.|| +|++.....
T Consensus 60 ~~~g~mG~~~~aaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~E-L~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~ 133 (227)
T d1t9ba3 60 GGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT-LTE-LSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEH 133 (227)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-GGG-HHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTT
T ss_pred cccccchhhHHHHHHHHhcC----CCCeEEEeCCCcccccc-hHH-HHHHhhcCCceEEEEEecccccchhHHHhhhhcc
Confidence 46799999999999999996 78899999999998764 455 999999999986555554 587432211
Q ss_pred ----cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 240 ----RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 240 ----~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
.....+||.+ +++|+++++|. +.+++.+++++|++. ++|+|||+.+.+-.
T Consensus 134 ~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~vd~~~ 189 (227)
T d1t9ba3 134 RYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVST---KGPVLLEVEVDKKV 189 (227)
T ss_dssp CCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHHC---SSCEEEEEEBCSSC
T ss_pred ccccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHHHC---CCCEEEEEEECCCC
Confidence 1224578887 56999999995 888999999998864 99999999997744
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.61 E-value=6.7e-16 Score=138.17 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=87.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEE-EEcCCccccccccc----c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV-CENNHYGMGTAEWR----A 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfV-v~NN~~gi~t~~~~----~ 241 (362)
++.|.||+++|+|+|+++|. +++.|||++|||++.+. . .+|.+|+++++|+++| ++|++|++...... .
T Consensus 48 ~~~g~mG~~l~aAiGa~la~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~~~~ 121 (204)
T d1zpda3 48 MQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT-A-QEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNN 121 (204)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-G-GGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC
T ss_pred CCCcccchhhHHHHHHHHhC----CCCceeccccccceeee-e-cccchhhhcccccceEEEecccccccceeccccccc
Confidence 45689999999999999985 78999999999998763 3 3499999999998655 55556886433221 1
Q ss_pred cCCchHhhh-----------cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 242 AKSPSYYKR-----------GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 242 ~~~~~~~~~-----------g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
...++|... ++|+++++|+ ++.++.+++++|+. ..+||+|||+.+.|
T Consensus 122 ~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~el~~al~~al~--~~~gp~lieV~vd~ 179 (204)
T d1zpda3 122 IKNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGGELAEAIKVALA--NTDGPTLIECFIGR 179 (204)
T ss_dssp CCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHH--CCSSCEEEEEECCT
T ss_pred cchhhhhhhhhhcCcchhhhccCccEEEec--CHHHHHHHHHHHHH--cCCCcEEEEEEECc
Confidence 224455431 3588899995 88999999998864 13899999998744
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.61 E-value=2.6e-16 Score=139.54 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=90.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeE-EEEEcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAI-LVCENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvI-fVv~NN~~gi~t~~~~----- 240 (362)
++.|.||+++|+|+|+++|. +++.||+++|||++.+. ..| |.+++++++|++ +|++||.|++......
T Consensus 51 ~~~g~mG~~l~~aiGa~la~----p~~~vi~i~GDG~f~~~-~~e-l~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~ 124 (192)
T d1ozha3 51 NGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS-SME-LETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQR 124 (192)
T ss_dssp CTTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH-TTH-HHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSS
T ss_pred cccccccccccchhHHHhhc----ccccceeecccccccch-hhh-HHHHhhhcCceeEEEEcCCCccccccccccccCc
Confidence 45789999999999999996 68899999999998763 344 889999999976 5556666886533221
Q ss_pred ----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ +++|+.+++|+ +++++.+++++|++. +||+|||+.|.+
T Consensus 125 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIeV~vd~ 177 (192)
T d1ozha3 125 LSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMDV---DGPAVVAIPVDY 177 (192)
T ss_dssp CCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHHS---SSCEEEEEEBCC
T ss_pred cccCcCCCCCHHHHHHHhccccEEeC--CHHHHHHHHHHHHHc---CCcEEEEEEeCC
Confidence 113468877 45999999996 677898888888764 999999998855
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.57 E-value=1.6e-15 Score=134.87 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=84.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEE-EEcCCcccccccc----c-
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV-CENNHYGMGTAEW----R- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfV-v~NN~~gi~t~~~----~- 240 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++.++ . .+|.++.++++|+++| ++|++|++..... +
T Consensus 50 ~~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~~~ 123 (196)
T d1ovma3 50 PLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT-I-QELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 123 (196)
T ss_dssp TTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH-T-THHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred CCCccccccchhhHHHHHhh----hccceecccccccceee-c-ccccccccccccceEEEEecCccccchhhhcccccc
Confidence 45689999999999999996 67899999999998774 3 4599999999998655 5555688642221 1
Q ss_pred -ccCCchHhh--hcCC----cceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -AAKSPSYYK--RGDY----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -~~~~~~~~~--~g~g----i~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....++|.. +++| .++++|+ +++++.+++++|++. +||+|||+.+.|
T Consensus 124 ~~~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~al~~a~~~---~gp~lIev~~~~ 177 (196)
T d1ovma3 124 NDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAHH---ERLSLIEVMLPK 177 (196)
T ss_dssp GCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTTC---SSEEEEEEECCT
T ss_pred ccccccccchhHHhcCccccceeEEEe--cHHHHHHHHHHHHHC---CCcEEEEEEeCh
Confidence 112345654 3444 4677885 788888887776643 999999998744
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=1.1e-15 Score=135.71 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=89.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeE-EEEEcCCcccccccc--c---
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAI-LVCENNHYGMGTAEW--R--- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvI-fVv~NN~~gi~t~~~--~--- 240 (362)
.+.|.||+++|.|+|+|+|.|...+++.|||++|||++.+. +.| |.+++++++|++ +|++||+|++..... +
T Consensus 50 ~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~m~-~~e-L~ta~~~~l~i~~iV~nN~~y~~~~~~~~~~~~~ 127 (196)
T d1pvda3 50 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT-VQE-ISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQY 127 (196)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH-GGG-HHHHHHTTCCCEEEEEESSSCHHHHTTSCTTCGG
T ss_pred CCcCcccccccchhHHHHHHHhcCCCCceeeccCccccccc-ccc-ccccccccccceEEEEeCCccceeEeeccCcccc
Confidence 45689999999999999999999999999999999998763 334 999999999975 566666787532211 1
Q ss_pred -ccCCchHhhh--cCCcce---EEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 241 -AAKSPSYYKR--GDYVPG---LKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 241 -~~~~~~~~~~--g~gi~g---~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
....+||.+. ++|.++ .+|+ ++.++.++++++.. .+ ++|+|||+.+.|
T Consensus 128 ~~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~~al~~~~~--~~~~~~~lIeV~i~~ 182 (196)
T d1pvda3 128 NEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSF--NDNSKIRMIEIMLPV 182 (196)
T ss_dssp GCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTT--TSCSSEEEEEEECCT
T ss_pred ccCCCCCHHHHHHHhCCCCceEEEec--CHHHHHHHHHHHHH--hCCCCcEEEEEECCC
Confidence 1134678774 487665 4564 78888888866532 24 799999998754
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.5e-13 Score=135.15 Aligned_cols=131 Identities=19% Similarity=0.076 Sum_probs=93.4
Q ss_pred ccCCccccchhHHHHHHHHHHh-------hCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccccc
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQK-------YSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTA 237 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k-------~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~ 237 (362)
.+..+.+|.+.+.++|.+.+.+ ..+.+..|+|++|||++++|+.|||+++|+.++|. +|+|+++|.+.+..+
T Consensus 133 ~~~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~ 212 (415)
T d2ieaa2 133 QFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGP 212 (415)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSB
T ss_pred cCCCchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeeccC
Confidence 3444556666655555554433 23567899999999999999999999999999995 789999999988765
Q ss_pred cccccC-CchHhh--hcCCcce----------------------------------------------------------
Q 018037 238 EWRAAK-SPSYYK--RGDYVPG---------------------------------------------------------- 256 (362)
Q Consensus 238 ~~~~~~-~~~~~~--~g~gi~g---------------------------------------------------------- 256 (362)
...... ..++.+ +++|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l 292 (415)
T d2ieaa2 213 VTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAAL 292 (415)
T ss_dssp SCTTSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTT
T ss_pred hhccccchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhHH
Confidence 432111 011111 1122222
Q ss_pred -----------EEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018037 257 -----------LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 257 -----------~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~ 298 (362)
+.+||+|+.++++++++|.+. +++|++|.+.|.+.+|-..
T Consensus 293 ~~~l~~~~~~~l~~dGHd~~~l~~a~~~ak~~--~d~P~vI~a~TiKGkGlp~ 343 (415)
T d2ieaa2 293 VADWTDEQIWALNRGGHDPKKIYAAFKKAQET--KGKATVILAHTIKGYGMGD 343 (415)
T ss_dssp STTSCHHHHTTCCBGGGCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTT
T ss_pred HhhhhhhhhhhhhhccCchhhhHHHHHHHHhc--CCCceEEEEecccccCCCc
Confidence 245999999999999998874 3679999999999998653
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.55 E-value=6.4e-15 Score=129.43 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=87.7
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|.+ |. +++.||++.|||++.+. ..| |.+|+++++|+++||.||+ |.......
T Consensus 54 ~~~g~mG~~l~~aig~~-a~----~~~~vv~i~GDGsf~~~-~~e-l~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~~~ 126 (183)
T d2ji7a3 54 GTWGVMGIGMGYCVAAA-AV----TGKPVIAVEGDSAFGFS-GME-LETICRYNLPVTVIIMNNGGIYKGNEADPQPGVI 126 (183)
T ss_dssp TTTTCTTCHHHHHHHHH-HH----HCSCEEEEEEHHHHHTT-GGG-HHHHHHTTCCEEEEEEECSBSSCSCCCCSBTTBC
T ss_pred CCccccccccchhhhhh-cC----CcceEEEEEcCcchhhc-hhh-hhhhhhccccchhhhhhhhhhhhhhhcccccccc
Confidence 45689999999999876 33 57789999999998774 444 8899999999988888875 32211110
Q ss_pred --cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 --RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 --~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....++|.+ ++||+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 127 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~idp 178 (183)
T d2ji7a3 127 SCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVAS---GKPCLINAMIDP 178 (183)
T ss_dssp CTTBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHHH---TSCEEEEEEBCT
T ss_pred ccccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHHhC---CCcEEEEEEECC
Confidence 0113467877 45999999996 788999999998865 999999998855
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=97.50 E-value=0.00026 Score=68.32 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=70.7
Q ss_pred HhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccccc----------------CCchH
Q 018037 186 QKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA----------------KSPSY 247 (362)
Q Consensus 186 ~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~----------------~~~~~ 247 (362)
.+....+..||++.|||. +..|. .+|.-|...+.++++||.||. |+++..+.... ...|+
T Consensus 163 ~~d~~~k~~V~~~gGDG~~~dIG~--~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi 240 (447)
T d2c42a2 163 MSDLYTKKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDL 240 (447)
T ss_dssp TGGGTSCCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCH
T ss_pred hhhcccCCcEEEEecCccHhhcCh--HHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCH
Confidence 333446778999999999 56663 337778899999887777665 77754332110 11233
Q ss_pred hh--hcCCcceE-EEe-CCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 248 YK--RGDYVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 248 ~~--~g~gi~g~-~Vd-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
.. .++|++.+ ++. +.++.++.+++++|+++ +||.+|++..
T Consensus 241 ~~ia~a~g~~YVA~~s~~~~~~~l~kaikeA~~~---~GpS~I~~~s 284 (447)
T d2c42a2 241 ARMVMTYGYVYVATVSMGYSKQQFLKVLKEAESF---PGPSLVIAYA 284 (447)
T ss_dssp HHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHHS---SSCEEEEEEC
T ss_pred HHHHHHCCCceEEEEeCCCCHHHHHHHHHHHHhC---CCCeEEEeec
Confidence 32 45887765 554 78999999999999987 9999999985
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=95.17 E-value=0.049 Score=48.30 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc---cccccccccCCchHhhhcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG---MGTAEWRAAKSPSYYKRGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g---i~t~~~~~~~~~~~~~~g~ 252 (362)
+..++|++++ +.++.+...-.+++ ...|.|..+.-.++|+++++.+.... .++..+.. .-+..+..
T Consensus 67 ~~~~~Ga~~a------G~r~~t~ts~~Gl~--~m~e~l~~a~~~~~P~V~~v~~r~~~~~~~~~~~~q~---d~~~~~~~ 135 (257)
T d2c42a1 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQ---DIYAARQT 135 (257)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCCSH---HHHTTTTS
T ss_pred HHHHHHHHhc------CCCeEEEecchHHH--HHHHHHHHHHhcCCceEEEEEecCCCCCCCccccchH---HHHHHHhc
Confidence 5667777765 23455554333333 36788999999999987776665442 22221111 12233445
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~ 299 (362)
|++.+ .-.++.++++-...|.+.+.+ +-|+++-...+|. +|...
T Consensus 136 g~~~l--~~~s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~~-sh~~~ 180 (257)
T d2c42a1 136 GFAML--ASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHEIQ 180 (257)
T ss_dssp SCEEE--ECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTCEE
T ss_pred ceEEE--ecCCHHHHHHHHHHHHHHHHHhCCCEEEEeccchh-cCCcC
Confidence 66544 446899999999999988888 8899999888885 56543
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.70 E-value=0.052 Score=45.46 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|-|.+... ++-.++++..|=|.+| ...++..|...+.|+|+|.-+.... .+..... ..|... +.+
T Consensus 55 ~~~A~gyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~isg~~~~~~~~~~~~q---~~d~~~~~~~~ 125 (181)
T d1ozha2 55 AFMAAAVGRIT---GKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQVHQ---SMDTVAMFSPV 125 (181)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC---------CCCHHHHHGGG
T ss_pred HHHHHHHHHhc---CCccceeeccchhhhh---hhhhHHHHhhcCCceeeeecccchhhccccccc---ccccccccccc
Confidence 34555666543 3445555555666666 3456778889999999988765532 2211111 112221 122
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
.-...+| .+++++.+.+.+|+..+.. .||++|++-
T Consensus 126 tk~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (181)
T d1ozha2 126 TKYAIEV--TAPDALAEVVSNAFRAAEQGRPGSAFVSLP 162 (181)
T ss_dssp CSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred chheecc--CchhHHHHHHHHHHHHHhhCCCccEEEEcC
Confidence 2223455 3677888888888888877 589999985
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=94.66 E-value=0.054 Score=45.90 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.+.+. ++-.++++..|=|.+| ..-++..|..-+.|+|+|.-+.... .+..... ..+... +.+-
T Consensus 64 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~~~~q---~~d~~~~~~~~t 134 (195)
T d1ybha2 64 FAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ---ETPIVEVTRSIT 134 (195)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT---CCCHHHHHGGGS
T ss_pred HHHHHHHHHH---CCCeEEEEecChHHHH---HHHHHHHHHHcCCCEEEEecCCcHHHhccCccc---ccchhhhhcccc
Confidence 4566666553 3445666666777776 3446788889999999988764332 1111101 111111 1121
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
-...+| .+++++.+++++|+..+.. .||+.|++-
T Consensus 135 k~~~~v--~~~~~~~~~~~~A~~~a~~~r~GPV~l~iP 170 (195)
T d1ybha2 135 KHNYLV--MDVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (195)
T ss_dssp SEEEEC--CCGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred cchhhc--chHhhcchHHHHHHHHHhcCCCCcEEEECC
Confidence 122444 4777888889999988876 689999995
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=94.66 E-value=0.091 Score=43.99 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc---cccccccccCCch---Hhh
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG---MGTAEWRAAKSPS---YYK 249 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g---i~t~~~~~~~~~~---~~~ 249 (362)
.-+|.|.+... ++. .+++..|=|.+| ...++..|...++|+|+|+-+.... .+....+.....+ ...
T Consensus 53 ~~mA~gyar~t---g~~-~v~~t~GpG~~N---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (186)
T d1zpda2 53 GFSAEGYARAK---GAA-AAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 125 (186)
T ss_dssp HHHHHHHHHHH---SCE-EEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred ehhhhhhhhcc---ccc-eeEeeccccchh---hhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhh
Confidence 34566666543 332 233345655554 4567888999999999998654322 1111111111111 111
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
+.+.-...+|+ +++++.+.+++|+..+.. ++|+.|++-
T Consensus 126 ~~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~PV~l~iP 166 (186)
T d1zpda2 126 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIA 166 (186)
T ss_dssp HHGGGCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccCCceeeeeEcC--CHHHHHHHHHHHHHHHhhCCCCEEEECC
Confidence 12333345664 677777788888877777 789999984
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.061 Score=44.64 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+... ++-.++++..|=|.+| ..-++..|...++|+|+|+-+.... ...... + ..|... +.+
T Consensus 55 ~~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~-q--~~d~~~l~~~~ 125 (175)
T d1t9ba2 55 GHMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGTDAF-Q--EADVVGISRSC 125 (175)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTSCCT-T--CCCHHHHTGGG
T ss_pred HHHHHHHHHHh---CCceEEEEecCcHHHH---HHHHHHHHHHcCCCEEEEecCCChhhcCCCcc-c--cccHhHhcccc
Confidence 34566666543 3445555556667766 3456788889999999998765432 111111 1 112222 112
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
--...++ .++..+.+.+++|+..++. .||+.|++-
T Consensus 126 tk~~~~v--~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 162 (175)
T d1t9ba2 126 TKWNVMV--KSVEELPLRINEAFEIATSGRPGPVLVDLP 162 (175)
T ss_dssp SSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeeeEec--CCHHHHHHHHHHHHHHHhcCCCccEEEEcC
Confidence 1122455 4677888888888888876 689999984
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=94.53 E-value=0.063 Score=44.61 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhhhcCCcc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYVP 255 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~~g~gi~ 255 (362)
-+|-|.+... ++-.++++..|=|.+|. .-+|..|...+.|+|+|.-+..- .......+......+.+ ..--.
T Consensus 56 ~~A~gyar~t---gk~gv~~~t~GpG~~N~---~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~Q~~d~~~~~~-~itk~ 128 (174)
T d2ez9a2 56 MAAAADAKLT---GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYA-DVADY 128 (174)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCHHHHT-TTCSE
T ss_pred HHHHHHHhhc---CceeEEeecccccccch---hhhHHHHHhcCccceeeeccccccccCccccccchhhhhhc-ccccc
Confidence 4455665543 44556666667777763 44577788999999999876432 11111111111111111 11111
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
..+|. +++++.+.+++|+..+.. .||++|++-
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~A~~~pGPv~l~iP 161 (174)
T d2ez9a2 129 NVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 161 (174)
T ss_dssp EEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred ccccc--cHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 24453 555666667777766666 899999984
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=94.28 E-value=0.062 Score=45.08 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCcc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVP 255 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi~ 255 (362)
-+|.|.+. ..++-.++++..|=|.+| ...+|.-|...+.|+|+|+-+.... ......+........ +...-.
T Consensus 57 ~~A~gyar---~tg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~~-~~itk~ 129 (184)
T d2djia2 57 MAAVMQSK---FGGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMY-DHIAVY 129 (184)
T ss_dssp HHHHHHHH---TTCCCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEESCGGGTTTTCTTCCCCHHHH-HTTCSE
T ss_pred HHHHhhhh---cccCcceeeccccccccc---hhHhHHHHHHhCccceeecccchhhHhhcCcccccccccch-hhhcce
Confidence 34455543 334445555666777776 3455778889999999998654321 111100011111111 112222
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
..+|. +++++.+.+++|+..+.. .||++|++-
T Consensus 130 ~~~v~--~~~~~~~~~~~A~~~a~~~rGPv~i~iP 162 (184)
T d2djia2 130 NRRVA--YAEQLPKLVDEAARMAIAKRGVAVLEVP 162 (184)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred eeccc--cchhhHHHHHHHHHHHhCCCCCEEEEeC
Confidence 34553 677888888888887777 899999984
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.27 E-value=0.095 Score=43.88 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.+... ++-.++++..|=|.+| ..-++..|...+.|+|+|.-+.. .........+ ..|... +.+-
T Consensus 51 ~~A~gyar~t---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~q--~~d~~~~~~~~t 122 (186)
T d2ihta2 51 VAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQ--CLDSVAIVAPMS 122 (186)
T ss_dssp HHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTT--CCCHHHHHGGGS
T ss_pred HHHHHHhhcc---CCcceeeccccccccc---hhhhhhHHHHhhccceeeeccCcchhcccccccc--ccccccccCCce
Confidence 3455555443 4445566666777766 44557778889999999876533 2221111111 122222 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
-...+| .+++++.+.+++|+..+.. .||++|++-
T Consensus 123 k~~~~v--~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP 158 (186)
T d2ihta2 123 KYAVEL--QRPHEITDLVDSAVNAAMTEPVGPSFISLP 158 (186)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred eecccc--CCchhhhhHHHHHHHHHhcCCCeeEEEEeC
Confidence 233566 3778888999999988876 689999985
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=93.93 E-value=0.064 Score=45.05 Aligned_cols=105 Identities=11% Similarity=0.108 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ...++..|...+.|+|+|.-+-.-.. +... ......|... +.+
T Consensus 54 ~~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~q~~d~~~~~~~~ 126 (188)
T d2ji7a2 54 GYAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQ-GDYEEMDQMNVARPH 126 (188)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTC-CCTTCCCHHHHTGGG
T ss_pred hhHHHHHHhhh---cccceeeccccccccc---cchhHHHHHHhcccceEEeccCchhhhcccc-cccceeeeecccCCc
Confidence 44566666653 3444555556666555 45668888999999999885432110 0000 0000112211 112
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
--...+|. +++++.+.+++|+..+.+ .||+.|++-
T Consensus 127 tk~~~~v~--~~~~i~~~~~~A~~~a~~~~~GPV~l~iP 163 (188)
T d2ji7a2 127 CKASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLP 163 (188)
T ss_dssp SSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred chhhhccc--cccccHHHHHHHHHHHhCCCCceEEEEcC
Confidence 22235563 677888888888887776 589999984
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.076 Score=44.14 Aligned_cols=105 Identities=8% Similarity=0.015 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-ccc--ccccccCCc---hHhh
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGT--AEWRAAKSP---SYYK 249 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t--~~~~~~~~~---~~~~ 249 (362)
.-+|.|.+.+. +. .++++..|=|.+| ...++..|...++|+|+|+-+.... ... ......... ++..
T Consensus 54 ~~~A~gyar~t---~~-~~v~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (180)
T d1pvda2 54 AYAADGYARIK---GM-SCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHR 126 (180)
T ss_dssp HHHHHHHHHHH---SC-EEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHH
T ss_pred hHHHHHHhhcc---CC-ceeeeccccccch---hhHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHH
Confidence 44566666543 22 3555666777665 4566778889999999998654432 111 111111111 1111
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
+.+--...++. +++++.+.+++|+..+.. +||+.|++-
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~gPv~i~iP 167 (180)
T d1pvda2 127 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLP 167 (180)
T ss_dssp HHGGGCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 11111123443 455555566666665555 899999984
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=91.53 E-value=0.25 Score=40.93 Aligned_cols=105 Identities=19% Similarity=0.123 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+... ++-.++++..|=|.+| ..-+|..|...+.|+|+|.-+-... .+.....+ ..|... +.+
T Consensus 50 ~~mA~gyar~t---gk~~v~~~~~GpG~~n---~~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~~~~q--~~D~~~~~~~~ 121 (180)
T d1q6za2 50 VGIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT--NVDAANLPRPL 121 (180)
T ss_dssp HHHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC--CTTGGGSSTTS
T ss_pred HHHHHHHhhhc---cCcceEEecccccccc---ccceeHhhhhcccceeeeccccccccccccccch--hhheeeccccc
Confidence 34566666543 4556677777777776 3456788999999999988754321 11111001 112211 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+| .+++++.+.+++|+..+.. .||+.|++-.
T Consensus 122 tK~~~~v--~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~ 159 (180)
T d1q6za2 122 VKWSYEP--ASAAEVPHAMSRAIHMASMAPQGPVYLSVPY 159 (180)
T ss_dssp CSCEECC--SSGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred ccccccC--CCHHHHHHHHHHHHHHHhcCCCccEEEEcCh
Confidence 1113455 3677888888898888776 6899999963
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.54 Score=39.47 Aligned_cols=98 Identities=20% Similarity=0.173 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHHhhCCCCCeEEEE--eCCcccccchHHHHHHHHH--------hCCCCeEEEEEcCCcccccccccccC
Q 018037 174 AQIPLGCGLAFAQKYSKDETVTFAL--YGDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGMGTAEWRAAK 243 (362)
Q Consensus 174 ~~~p~A~G~A~A~k~~~~~~vvv~~--~GDGa~~~G~~~Ealn~A~--------~~~LPvIfVv~NN~~gi~t~~~~~~~ 243 (362)
..+++|+|+|++ +-+.|+. +.|=. .-.+.+-.|.++ .+++|+|+.+-.....-..+++.+.
T Consensus 62 ~~~G~a~G~A~~------G~rPive~~~~df~--~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g~g~~Hs~~- 132 (192)
T d2ozlb1 62 GFAGIAVGAAMA------GLRPICEFMTFNFS--MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQC- 132 (192)
T ss_dssp HHHHHHHHHHHT------TCEEEEECSSGGGG--GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCC-
T ss_pred HHHHHHHHHHhc------CCceEEEEEeccch--hhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCCcccccccc-
Confidence 345778888874 2333333 44544 323445556564 4678888877665543222222221
Q ss_pred CchHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEE
Q 018037 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMIL 286 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lI 286 (362)
+.+.-..+||++| -=.++.+.+..++.|++. ++|+++
T Consensus 133 ---~~~~~~~~PGl~Vv~Ps~p~da~gll~~Ai~~---~~Pvi~ 170 (192)
T d2ozlb1 133 ---FAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRD---NNPVVV 170 (192)
T ss_dssp ---CHHHHHTSTTCEEECCCSHHHHHHHHHHHHHS---SSCEEE
T ss_pred ---hHHhhccCCceEEEecCCHHHHHHHHHHHHhC---CCCEEE
Confidence 1221124677665 346899999999999875 889865
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=1.4 Score=36.91 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCch
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
..|+-.+. +++|.|+|... .-.+.+.++ ++-....++.+.++...+.++|+|+...+.+.+..-.....-.|
T Consensus 74 ~~GIaEq~M~~iAaGlA~~g----~~~p~~stf---~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iED 146 (195)
T d2r8oa1 74 HYGVREFGMTAIANGISLHG----GFLPYTSTF---LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQ 146 (195)
T ss_dssp ECCSCHHHHHHHHHHHHHHS----SCEEEEEEE---GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred eeeeehhhHHHHHHHHHhhC----CceEEeecc---eeeeccccchhhccccccccceeeeccccccccccchhhHHHHH
Confidence 45777765 46677887642 112222222 32223467779999999999988887776654322111112345
Q ss_pred Hhh-hcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 247 YYK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 247 ~~~-~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
++- |+ +|++.| .=-|..++..+++.|++. .+||+.|-
T Consensus 147 ia~lR~--iPn~~v~~P~D~~E~~~a~~~a~~~--~~gP~ylR 185 (195)
T d2r8oa1 147 VASLRV--TPNMSTWRPCDQVESAVAWKYGVER--QDGPTALI 185 (195)
T ss_dssp HHHHHT--STTCEEECCSSHHHHHHHHHHHHHC--SSSCEEEE
T ss_pred HHHHHh--hCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEE
Confidence 544 33 344333 235788888888888762 27999884
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=87.62 E-value=1.2 Score=37.69 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEE--eCCcccccchHHHHHHHHH--------hCCCCeEEEEEcCCcccccccccccCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFAL--YGDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGMGTAEWRAAKS 244 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~--~GDGa~~~G~~~Ealn~A~--------~~~LPvIfVv~NN~~gi~t~~~~~~~~ 244 (362)
.+++|+|+|++- .+.|+. +.|=.+. .+.+-.|.++ .++.|+++..-...+.-+.+.+.+
T Consensus 64 ~vG~A~GlA~~G------~rPvve~~~~df~~~--a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~Hs~--- 132 (204)
T d1qs0b1 64 IVGTAVGMGAYG------LRPVVEIQFADYFYP--ASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQ--- 132 (204)
T ss_dssp HHHHHHHHHHHT------CEEEEECSCGGGCGG--GHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSC---
T ss_pred ehhHHHHHhcCC------CcEEEEEEecchhhH--HHHHHHHHHHHhhcccccCcccceEEEcCcccccCccccccc---
Confidence 357788988863 234443 4554432 2334445554 445676666554332222222211
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEE--EecCC
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD--TYRYH 294 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~--tyR~~ 294 (362)
.+. +.-..+|+++| -=.|+.+.+..++.|++. ++|+++--. .|+..
T Consensus 133 ~~~-s~~~~iPgl~Vv~Ps~~~da~~ll~~a~~~---~~Pvi~~e~k~ly~~~ 181 (204)
T d1qs0b1 133 SPE-AMFTQVCGLRTVMPSNPYDAKGLLIASIEC---DDPVIFLEPKRLYNGP 181 (204)
T ss_dssp CCH-HHHTTSTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEEEEGGGSSSC
T ss_pred CHH-HHHhcCCCcEEEeeCCHHHHHHHHHHHHhC---CCcEEEEeeHHHhCCC
Confidence 222 22235777766 346889999999998875 999866443 35544
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=85.87 E-value=2.1 Score=35.60 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCch
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
..|+-.+. +.+|.|.|+.. .-.++++++ ..+.+ -.++.+.++...++||++|....++..+..-.....-.|
T Consensus 68 ~~GIaEqnm~~iAaGla~~~----g~~p~~~t~--~~F~~-r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~ieD 140 (190)
T d1r9ja1 68 RFGVREHAMCAILNGLDAHD----GIIPFGGTF--LNFIG-YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVEL 140 (190)
T ss_dssp ECCSCHHHHHHHHHHHHHHS----SCEEEEEEE--GGGGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred eeccchhhHHHHHHHHHHcC----CcceEEecc--hhhhc-cchHHHHHhcccCCceEEEEecCccccCCCCcchhHHHH
Confidence 57888876 67788888642 222333333 22333 345668888899999999998888754432211112345
Q ss_pred Hhh-hc-CCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 247 YYK-RG-DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 247 ~~~-~g-~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
++- |. -++..+ .=-|..++..+++.|++. .++|+.|-+
T Consensus 141 la~~R~iPn~~V~--~PaD~~E~~~al~~a~~~--~~gP~yiRl 180 (190)
T d1r9ja1 141 VAALRAMPNLQVI--RPSDQTETSGAWAVALSS--IHTPTVLCL 180 (190)
T ss_dssp HHHHHHSTTCEEE--CCSSHHHHHHHHHHHHHC--TTCCEEEEC
T ss_pred HHHHHhcCCEEEE--ecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 543 33 233332 335788888888888752 289998843
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.22 E-value=1.3 Score=37.02 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCch
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
..|+-.+.+ ++|.|+|+.- ..-++++ ..=..+... ....+.++...++||++|....+++.+..-.....-.|
T Consensus 76 ~~GIaEq~m~~iaaGlA~~G----~~~~p~~-~t~~~f~~~-~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieD 149 (197)
T d1gpua2 76 RYGIREHAMGAIMNGISAFG----ANYKPYG-GTFLNFVSY-AAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 149 (197)
T ss_dssp ECCSCHHHHHHHHHHHHHHC----TTCEEEE-EEEHHHHGG-GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred ecccchhhHHHHHHHHHHcC----CceeEEE-Eeehhhhhh-hHHHHHHhhhcCCceEEEEecccccccccccchhhHHH
Confidence 456655554 6677877642 1112222 111223332 34457788899999999998887755432211112234
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
+.-. -.+|++.| .=-|..++..+++.|++. .+||+.|-+
T Consensus 150 ia~~-r~iPn~~v~~PaD~~e~~~a~~~a~~~--~~gP~yiRl 189 (197)
T d1gpua2 150 LAHF-RSLPNIQVWRPADGNEVSAAYKNSLES--KHTPSIIAL 189 (197)
T ss_dssp HHHH-HTSSSCEEECCCSHHHHHHHHHHHHHC--SSCCEEEEC
T ss_pred HHHH-hcCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 4431 13455544 235788888888888763 278999843
|
| >d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.13 E-value=2.4 Score=35.57 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHHhhCCCCCeEEEE-eCCcccccchHHHHHHHHHh--------CCCCeEEEE-EcCCcccccccccccC
Q 018037 174 AQIPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALNIAAL--------WDLPAILVC-ENNHYGMGTAEWRAAK 243 (362)
Q Consensus 174 ~~~p~A~G~A~A~k~~~~~~vvv~~-~GDGa~~~G~~~Ealn~A~~--------~~LPvIfVv-~NN~~gi~t~~~~~~~ 243 (362)
..++.|+|+|++- -++++.+ ++|=. .-.+.+-.|.++. ++.|+|++. --..++.+.+.+.+..
T Consensus 77 ~~~G~a~G~A~~G-----~rPive~~f~dF~--~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~~g~~~HSq~~ 149 (203)
T d2bfdb1 77 GIVGFGIGIAVTG-----ATAIAEIQFADYI--FPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSP 149 (203)
T ss_dssp HHHHHHHHHHHTT-----CCEEEECSSGGGC--GGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCC
T ss_pred eecchhhhhhhcc-----cceEEEEEehhhh--hhhHHHHHHHHhhhhcccCCccccccceeeeccccCccccccccccH
Confidence 3356788888752 2333333 55543 3235555666665 355555443 3333343333332221
Q ss_pred CchHhhhcCCcceEEEe-CCCHHHHHHHHHHHHHHhccCCCEEE
Q 018037 244 SPSYYKRGDYVPGLKVD-GMDALAVKQACKFAKEHALKNGPMIL 286 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~Vd-G~D~~av~~a~~~A~~~ar~~gP~lI 286 (362)
. .+. ..+|+++|= =.++.+.+..++.|++. +.|+++
T Consensus 150 ~-~~~---~~~PGl~Vv~Ps~p~Da~gll~~ai~~---~~Pvi~ 186 (203)
T d2bfdb1 150 E-AFF---AHCPGIKVVIPRSPFQAKGLLLSCIED---KNPCIF 186 (203)
T ss_dssp H-HHH---HTSTTCEEECCSSHHHHHHHHHHHHHS---SSCEEE
T ss_pred H-HHH---cCCCCcEEEecCCHHHHHHHHHHHHhC---CCcEEE
Confidence 1 121 236666653 36889999999998865 899866
|
| >d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.38 E-value=3 Score=34.54 Aligned_cols=101 Identities=20% Similarity=0.068 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHh--------CCCCeEEEEEcCCcccccccccccCCc
Q 018037 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAAL--------WDLPAILVCENNHYGMGTAEWRAAKSP 245 (362)
Q Consensus 174 ~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~--------~~LPvIfVv~NN~~gi~t~~~~~~~~~ 245 (362)
..++.|+|+|+.- -.-++...+.|-...- +.+-.|.++. ++.|+|+-+-.....-+.+.+.+
T Consensus 66 ~~~G~a~GlA~~G----~rPive~~~~df~~~a--~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~~~~gg~~Hs~---- 135 (191)
T d1ik6a1 66 GILGFAMGMAMAG----LKPVAEIQFVDFIWLG--ADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSN---- 135 (191)
T ss_dssp HHHHHHHHHHHTT----CEEEEECCCC----CC--HHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHHHhc----CceEEEEEecchhHHH--HHHHHHHHHHHHHhcCCccccccceeecccCCCCCcccccC----
Confidence 3457788888742 2223333466766332 4444565554 56788777755432211111111
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
.+.+.-..+|+++| -=.|+.+.+..++.|++. ++|+++-
T Consensus 136 ~~~a~~~~iPgl~Vv~Ps~p~da~~ll~~al~~---~~Pv~~~ 175 (191)
T d1ik6a1 136 SPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRG---DDPVVFL 175 (191)
T ss_dssp -HHHHHHTCTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEE
T ss_pred CHHHHHHHhhcccEEecCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 12222235677665 336899999999999875 8898663
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=80.88 E-value=2.1 Score=34.63 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN 230 (362)
.-+|.|.+... +. ..+++..|=|.+| ..-+|..|...+.|+|+|.-..
T Consensus 54 ~~~A~gyar~t---~~-~~v~~t~GpG~~n---~~~gl~~A~~~~~Pvl~isg~~ 101 (178)
T d1ovma2 54 SYAADGYARCK---GF-AALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAP 101 (178)
T ss_dssp HHHHHHHHHHH---SC-EEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEEC
T ss_pred HHHHHHHHhcC---CC-ceEEeeccccccc---cchhhhHHHhcCccEEEEecCC
Confidence 34455665543 23 2455556766665 3456788889999999998653
|