Citrus Sinensis ID: 018039

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREVCSSSFVFTTVQ
cHHHHHHHHHHHccccEEEEEEEEccccccccEEEcccccccccccEEEEEccccccccccccEEEccccccEEEEEccccccccccEEEEEEEEEEcccccccccEEEEEcccccccccccccccEEEEccccccccccEEEEEEEcccccccccccccccccccccEEEEEEccccEEEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEccHHHHHHHHHHHHcccHHHcccccccccc
cHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEccccccccccEEEEEcccccccccccccEEccccEEEEEEcccccccccccEEEEEEEEEEccccccccEEEEEccccccHHHccccccEEEEEccccccccccEEEEEEEEcccccEEEEEEcccccccEEEEEEEEcccccEEEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEEEEccccEEccEEEEccHHHHHHHHHHHHcccccHHcEEEEEccc
MMLKLLVLFLFFQISVSEIFFeerfddgwrsrwvisdwkrsegkagyfkhtagkwhgdpddkgiqthTDARHYAISakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQkkfggdapyslmfgpdicgtqkKHLHVILSYqgqnypikkelecetdKLTHFYTfilrpdasysilidnrerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkwkipyidnpefeddpdlyvlkpikYVGIEVWQvkagsvydnilicddpAYAKQVVEEVLSnrevcsssfvfttvq
MMLKLLVLFLFFQISVSEIFFeerfddgwrsRWVISDWKRSEGKAGYFKhtagkwhgdpddKGIQTHTDARHYAIsakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTfilrpdasysILIDNRerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkwkIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLsnrevcsssfvfttvq
MMlkllvlflffQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREVCSSSFVFTTVQ
**LKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVN***************************************************************W***RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREVCSSSFVFT***
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRK***********WDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREVCSSSFV*****
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPK***********DGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREVCSSSFVFTTVQ
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREVCSSSFVFTTVQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREVCSSSFVFTTVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
O04153424 Calreticulin-3 OS=Arabido yes no 0.950 0.811 0.784 1e-166
Q40401416 Calreticulin OS=Nicotiana N/A no 0.947 0.824 0.645 1e-130
P93508415 Calreticulin OS=Ricinus c N/A no 0.917 0.8 0.656 1e-129
O04151425 Calreticulin-1 OS=Arabido no no 0.939 0.8 0.638 1e-127
Q38858424 Calreticulin-2 OS=Arabido no no 0.947 0.808 0.629 1e-127
Q9ZPP1416 Calreticulin OS=Berberis N/A no 0.966 0.841 0.639 1e-127
O81919416 Calreticulin OS=Beta vulg N/A no 0.917 0.798 0.644 1e-126
Q9XF98421 Calreticulin OS=Prunus ar N/A no 0.903 0.776 0.660 1e-124
Q9SLY8424 Calreticulin OS=Oryza sat no no 0.908 0.775 0.626 1e-120
Q9SP22420 Calreticulin OS=Zea mays N/A no 0.939 0.809 0.601 1e-117
>sp|O04153|CALR3_ARATH Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2 Back     alignment and function desciption
 Score =  583 bits (1502), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/352 (78%), Positives = 311/352 (88%), Gaps = 8/352 (2%)

Query: 4   KLLVLFLFFQISV--------SEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKW 55
           KL     FF +SV        SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW
Sbjct: 7   KLSFFCFFFLVSVLTLAPLAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKW 66

Query: 56  HGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYV 115
            GDPD+KGIQT+ DA+HYAISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YV
Sbjct: 67  PGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYV 126

Query: 116 NQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILR 175
           NQK+FGGD PYSLMFGPDICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILR
Sbjct: 127 NQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILR 186

Query: 176 PDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235
           PDASYS+L+DN+ER+ GSMYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+D
Sbjct: 187 PDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFD 246

Query: 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDN 295
           SIP+EIPD KAK+P++WDE+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDN
Sbjct: 247 SIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDN 306

Query: 296 PEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLS 347
           PEFEDDPDLYVLK IKY GIEVWQVKAGS++DNILICDDPAYA+ +V++  +
Sbjct: 307 PEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFA 358
Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q40401|CALR_NICPL Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1 Back     alignment and function description
>sp|P93508|CALR_RICCO Calreticulin OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|O04151|CALR1_ARATH Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1 Back     alignment and function description
>sp|Q38858|CALR2_ARATH Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3 Back     alignment and function description
>sp|Q9ZPP1|CALR_BERST Calreticulin OS=Berberis stolonifera PE=2 SV=1 Back     alignment and function description
>sp|O81919|CALR_BETVU Calreticulin OS=Beta vulgaris PE=2 SV=1 Back     alignment and function description
>sp|Q9XF98|CALR_PRUAR Calreticulin OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function description
>sp|Q9SLY8|CALR_ORYSJ Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2 Back     alignment and function description
>sp|Q9SP22|CALR_MAIZE Calreticulin OS=Zea mays GN=CRT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
255547520423 calreticulin, putative [Ricinus communis 0.964 0.825 0.854 1e-180
224146178421 predicted protein [Populus trichocarpa] 0.964 0.828 0.851 1e-176
217074662393 unknown [Medicago truncatula] 0.958 0.882 0.828 1e-174
357507831421 Calreticulin-3 [Medicago truncatula] gi| 0.958 0.824 0.828 1e-174
255638717408 unknown [Glycine max] 0.972 0.862 0.812 1e-173
356566955421 PREDICTED: calreticulin-3-like, partial 0.972 0.836 0.815 1e-173
356545437418 PREDICTED: calreticulin-3-like [Glycine 0.922 0.799 0.865 1e-172
224093048424 predicted protein [Populus trichocarpa] 0.980 0.837 0.801 1e-172
356531872422 PREDICTED: calreticulin-3-like [Glycine 0.972 0.834 0.803 1e-172
297735242448 unnamed protein product [Vitis vinifera] 0.917 0.741 0.864 1e-172
>gi|255547520|ref|XP_002514817.1| calreticulin, putative [Ricinus communis] gi|223545868|gb|EEF47371.1| calreticulin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/350 (85%), Positives = 329/350 (94%), Gaps = 1/350 (0%)

Query: 1   MMLKLLVLF-LFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDP 59
            ++KLL +F LF Q SV+EI FEE+FDDGW+SRWV SDWKRSEGKAG FKHTAGKW GDP
Sbjct: 12  TLIKLLPVFCLFVQFSVAEIIFEEKFDDGWQSRWVRSDWKRSEGKAGTFKHTAGKWSGDP 71

Query: 60  DDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKK 119
           DDKGIQT  DA+H+AISAKIPEFSNKNRTLV+QYSIRFEQDIECGGGYIKLLS +VNQKK
Sbjct: 72  DDKGIQTTNDAKHFAISAKIPEFSNKNRTLVLQYSIRFEQDIECGGGYIKLLSGFVNQKK 131

Query: 120 FGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDAS 179
           FGGD PYSLMFGPDICGTQKKHLHVILSYQGQNYPI+KELECETDKLTHFYTFILRPDAS
Sbjct: 132 FGGDTPYSLMFGPDICGTQKKHLHVILSYQGQNYPIRKELECETDKLTHFYTFILRPDAS 191

Query: 180 YSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPK 239
           YSILID RERDSGSMYTDWDILPP+KI+   AKKPADWDDREYIDDPNAVKPEGYD IPK
Sbjct: 192 YSILIDGRERDSGSMYTDWDILPPKKIRDTKAKKPADWDDREYIDDPNAVKPEGYDKIPK 251

Query: 240 EIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFE 299
           EIPDP A++PD+WD++E+G+W+PPKIPNPAYKGPWRPKRIKNPNYKGKWK+PYIDNPEFE
Sbjct: 252 EIPDPNAREPDDWDDEENGIWRPPKIPNPAYKGPWRPKRIKNPNYKGKWKVPYIDNPEFE 311

Query: 300 DDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNR 349
           DDPDLYVLKPIKYVG+EVWQVKAGS++DN+LICDDP YAK+V++EV +NR
Sbjct: 312 DDPDLYVLKPIKYVGVEVWQVKAGSIFDNVLICDDPEYAKEVIQEVFANR 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146178|ref|XP_002325909.1| predicted protein [Populus trichocarpa] gi|222862784|gb|EEF00291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217074662|gb|ACJ85691.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357507831|ref|XP_003624204.1| Calreticulin-3 [Medicago truncatula] gi|355499219|gb|AES80422.1| Calreticulin-3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255638717|gb|ACU19663.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356566955|ref|XP_003551690.1| PREDICTED: calreticulin-3-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|356545437|ref|XP_003541149.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|224093048|ref|XP_002309786.1| predicted protein [Populus trichocarpa] gi|222852689|gb|EEE90236.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531872|ref|XP_003534500.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|297735242|emb|CBI17604.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2201816424 CRT3 "calreticulin 3" [Arabido 0.930 0.794 0.804 1.1e-160
UNIPROTKB|P93508415 P93508 "Calreticulin" [Ricinus 0.947 0.826 0.639 4.8e-133
TAIR|locus:2195326424 CRT1b "calreticulin 1b" [Arabi 0.914 0.780 0.643 5.2e-129
TAIR|locus:2010723425 CRT1a "calreticulin 1a" [Arabi 0.906 0.771 0.649 2.2e-128
UNIPROTKB|Q9SLY8424 LOC_Os07g14270 "Calreticulin" 0.903 0.771 0.629 5.5e-125
DICTYBASE|DDB_G0283539424 crtA "calreticulin" [Dictyoste 0.941 0.804 0.491 1.7e-100
ZFIN|ZDB-GENE-000208-17418 calr "calreticulin" [Danio rer 0.892 0.772 0.524 3.5e-98
ZFIN|ZDB-GENE-030131-4042419 calrl2 "calreticulin, like 2" 0.895 0.773 0.510 1.4e-96
ZFIN|ZDB-GENE-030131-9907417 calrl "calreticulin like" [Dan 0.895 0.776 0.519 1.8e-96
UNIPROTKB|Q7Z1E6398 crt "Calreticulin" [Bombyx mor 0.908 0.826 0.519 2.2e-96
TAIR|locus:2201816 CRT3 "calreticulin 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1565 (556.0 bits), Expect = 1.1e-160, P = 1.1e-160
 Identities = 272/338 (80%), Positives = 309/338 (91%)

Query:    14 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHY 73
             ++ SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW GDPD+KGIQT+ DA+HY
Sbjct:    25 LAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHY 84

Query:    74 AISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPD 133
             AISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YVNQK+FGGD PYSLMFGPD
Sbjct:    85 AISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPD 144

Query:   134 ICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGS 193
             ICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILRPDASYS+L+DN+ER+ GS
Sbjct:   145 ICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGS 204

Query:   194 MYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWD 253
             MYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+DSIP+EIPD KAK+P++WD
Sbjct:   205 MYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIPREIPDRKAKEPEDWD 264

Query:   254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYV 313
             E+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDNPEFEDDPDLYVLK IKY 
Sbjct:   265 EEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYA 324

Query:   314 GIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLS-NRE 350
             GIEVWQVKAGS++DNILICDDPAYA+ +V++  + +RE
Sbjct:   325 GIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQHRE 362
GO:0005509 "calcium ion binding" evidence=IEA;ISS
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006457 "protein folding" evidence=IEA;IGI
GO:0009507 "chloroplast" evidence=ISM
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=IMP
GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP
GO:0055074 "calcium ion homeostasis" evidence=IGI
GO:0006995 "cellular response to nitrogen starvation" evidence=RCA
GO:0009617 "response to bacterium" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
UNIPROTKB|P93508 P93508 "Calreticulin" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
TAIR|locus:2195326 CRT1b "calreticulin 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010723 CRT1a "calreticulin 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SLY8 LOC_Os07g14270 "Calreticulin" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283539 crtA "calreticulin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000208-17 calr "calreticulin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4042 calrl2 "calreticulin, like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9907 calrl "calreticulin like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z1E6 crt "Calreticulin" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P27798CALR_CAEELNo assigned EC number0.48800.90050.8253yesno
O04153CALR3_ARATHNo assigned EC number0.78400.95020.8113yesno
P18418CALR_RATNo assigned EC number0.50900.89220.7764yesno
P29413CALR_DROMENo assigned EC number0.47260.94470.8423yesno
P27797CALR_HUMANNo assigned EC number0.50600.89220.7745yesno
Q9SP22CALR_MAIZENo assigned EC number0.60110.93920.8095N/Ano
P52193CALR_BOVINNo assigned EC number0.50300.89220.7745yesno
Q9ZPP1CALR_BERSTNo assigned EC number0.63920.96680.8413N/Ano
Q8K3H7CALR_CRIGRNo assigned EC number0.50600.89220.7745yesno
Q40401CALR_NICPLNo assigned EC number0.64530.94750.8245N/Ano
Q23858CALR_DICDINo assigned EC number0.48320.98060.8372yesno
Q7Z1E6CALR_BOMMONo assigned EC number0.51640.91160.8291N/Ano
P14211CALR_MOUSENo assigned EC number0.51210.89220.7764yesno
P15253CALR_RABITNo assigned EC number0.50300.89220.7727yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-136
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  391 bits (1007), Expect = e-136
 Identities = 165/362 (45%), Positives = 216/362 (59%), Gaps = 52/362 (14%)

Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGD-PDDKGIQTHTDARHYAI 75
           ++F E+FDD   W  RW+ S  K+ +   G +K  AGK++G    DKG+ T  DA+ YAI
Sbjct: 1   VYFFEQFDDDDLWEKRWIPSKAKKDD--DGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAI 58

Query: 76  SAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDI 134
           SAK P+ FSNK +TLVVQY ++ +Q I+CGG YIKLLS   +QK F G+ PY++MFGPDI
Sbjct: 59  SAKFPKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDI 118

Query: 135 CGTQKKHLHVIL------SYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRE 188
           CG+  K +H I        Y+ + + IKK +    DKLTH YT I+RPD ++ ILID   
Sbjct: 119 CGSDTKKVHFIFRHKPITGYKEEKHLIKKPISR-CDKLTHLYTLIIRPDNTFEILIDGEV 177

Query: 189 RDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD-SIPKEIPDPK 245
             SGS+  D+D    PP++I     KKP DWDDRE I DP A KPE +D   P+ IPDP 
Sbjct: 178 VKSGSLLEDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDPN 237

Query: 246 AKKPDNW-------------------DEDEDGLWKPPKIPNPA----------------- 269
           A KP+ W                   D++EDG W+ P IPNP                  
Sbjct: 238 AVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGCGKPPMIKNPK 297

Query: 270 YKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNI 329
           YKG W+P  I NPNYKG WK   I NP++ +DP+ Y L+PI  +G E+WQVK+G ++DNI
Sbjct: 298 YKGKWKPPMIDNPNYKGVWKPRKIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILFDNI 357

Query: 330 LI 331
           LI
Sbjct: 358 LI 359

Length = 359

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0675 558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 99.9
KOG0674406 consensus Calreticulin [Posttranslational modifica 99.85
KOG0675558 consensus Calnexin [Posttranslational modification 99.85
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-127  Score=922.90  Aligned_cols=355  Identities=52%  Similarity=1.029  Sum_probs=339.9

Q ss_pred             ChhH--HHHHHHhhhccceeeeeeccCC--CccCCCeEecccccCCCCCCcEEEeccccCCCCC-Ccceeeccccceeee
Q 018039            1 MMLK--LLVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI   75 (362)
Q Consensus         1 ~~~~--~~~~~~~~~~~~~~~~F~E~F~--~~~~~rWv~S~~~k~~~~~G~w~~~~g~~~g~~~-d~GL~~~~~a~~yaI   75 (362)
                      ||.+  ++.+|++++++++.|||.|.|.  ++|+.|||+|++++.  ..|+|.+++|+|+|++. |+||+|++++|||||
T Consensus         1 ~~~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~   78 (406)
T KOG0674|consen    1 MLPSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI   78 (406)
T ss_pred             CchhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeee
Confidence            4544  3334446677788999999995  449999999998753  57999999999999986 999999999999999


Q ss_pred             cccCCCcCCCCCceEEEEEEeeeceeeecCceEEecccccccccccCCCCeeEEEcccccCCCCceEEEEEeecCCcccc
Q 018039           76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPI  155 (362)
Q Consensus        76 s~~l~~~~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~  155 (362)
                      |++|+.|+|++|+|||||+||++|.|+|||||||||++.+|+.+|+++|||.||||||+||++|+|||+|++|+++||++
T Consensus        79 sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhli  158 (406)
T KOG0674|consen   79 SAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLI  158 (406)
T ss_pred             ecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCcCceeEEEECCCCcEEEEEcCeEeccCCCccCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 018039          156 KKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD  235 (362)
Q Consensus       156 ~~~~~~~~d~~tHlYTLil~pdntyei~ID~~~~~~gsl~~Dwd~~~p~~I~DP~d~KP~DWdd~~~I~Dp~a~KP~dWd  235 (362)
                      ++.++|++|++|||||||||||+||+|+|||+.+.+|||.+||+++||+.|.||.++||+|||++++|+||+++||++|+
T Consensus       159 kK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe  238 (406)
T KOG0674|consen  159 KKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE  238 (406)
T ss_pred             ccccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccCcccCCCCCCcccccccCCCCCCCCCCcccccCceeEEE
Q 018039          236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI  315 (362)
Q Consensus       236 d~p~~I~dP~~~kP~dwd~~~~G~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~p~~I~NP~y~~d~~~~~~~~i~~iG~  315 (362)
                       .|++||||+++||+|||+++||+|+||||+||.|+|+|+|++|.||+|||.|.+|+|.||+|..++.+|.+.+|++|||
T Consensus       239 -~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgl  317 (406)
T KOG0674|consen  239 -KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGL  317 (406)
T ss_pred             -cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeee
Confidence             6999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEEeecCceeeeEEecCCHHHHHHHHHHhccc-cccccccccc
Q 018039          316 EVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REVCSSSFVF  358 (362)
Q Consensus       316 elW~~~~g~~FDNi~i~~d~~~A~~~~~~t~~~-~~~E~~~~~~  358 (362)
                      |||||+||+||||||||+|+++|++++++||+. +.+|+++++.
T Consensus       318 dLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~  361 (406)
T KOG0674|consen  318 DLWQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDK  361 (406)
T ss_pred             eEEEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhh
Confidence            999999999999999999999999999999998 9999988753

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
3rg0_A332 Structural And Functional Relationships Between The 4e-78
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 3e-58
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 2e-50
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 2e-05
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 1e-49
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 8e-06
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 3e-49
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 2e-05
1hhn_A101 Calreticulin P-Domain Length = 101 2e-23
1k9c_A74 Solution Structure Of Calreticulin P-Domain Subdoma 2e-15
1k91_A37 Solution Structure Of Calreticulin P-Domain Subdoma 5e-06
3ici_C38 Crystal Structure Of Cyclophilin B In Complex With 7e-05
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure 
Iteration: 1

 Score =  288 bits (737), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 210/330 (63%), Gaps = 37/330 (11%)
Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
           I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+
Sbjct: 7   IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76  SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
           SAK   FSNK +TLVVQ++++ EQ+I+CGGGY+KL  + ++QK   GD+ Y++MFGPDIC
Sbjct: 64  SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
           G   K +HVI +Y+G+N  I K++  + D+ TH YT I+RPD +Y + IDN + +SGS+ 
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDED 255
            DWD LPP+KIK  +A KP DWD+R  IDDP   KPE                  +WD+ 
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPE------------------DWDKG 225
Query: 256 EDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI 315
             G             G W+P++I NP+YKG W  P IDNPE+  D ++Y       +G+
Sbjct: 226 GSG-------------GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGL 272
Query: 316 EVWQVKAGSVYDNILICDDPAYAKQVVEEV 345
           ++WQVK+G+++DN LI +D AYA++   E 
Sbjct: 273 DLWQVKSGTIFDNFLITNDEAYAEEFGNET 302
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 189-261) Length = 74 Back     alignment and structure
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 221-256) Length = 37 Back     alignment and structure
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With Calmegin Fragment Length = 38 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-118
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 1e-117
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 1e-74
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 7e-13
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 2e-41
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 4e-14
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
 Score =  348 bits (893), Expect = e-118
 Identities = 132/392 (33%), Positives = 198/392 (50%), Gaps = 61/392 (15%)

Query: 13  QISVSEIFFEERFDDGWRSRWVISDWKRSEGK------AGYFKHTAGKWHGDPDDKGIQT 66
            +   E++F + FD G  S W++S  K+ +         G ++    K    P DKG+  
Sbjct: 20  PVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVL 79

Query: 67  HTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLS--AYVNQKKFGGD 123
            + A+H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F   
Sbjct: 80  MSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDK 139

Query: 124 APYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFI 173
            PY++MFGPD CG   K LH I  ++     + +E   +          TDK TH YT I
Sbjct: 140 TPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLI 198

Query: 174 LRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKP 231
           L PD S+ IL+D    +SG++  D    + P R+I+    +KP DWD+R  I DP+AVKP
Sbjct: 199 LNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKP 258

Query: 232 EGYD-SIPKEIPDPKAKK-------------------PDNWDEDEDGLWKPPKIPNPA-- 269
           + ++   P +IPD +A K                   P++WDED DG W+ P+I NP   
Sbjct: 259 DDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCE 318

Query: 270 -----------------YKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKY 312
                            YKG W+P  I NPNY+G WK   I NP+F +D + + + P   
Sbjct: 319 SAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSA 378

Query: 313 VGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 344
           +G+E+W + +   +DN ++C D         +
Sbjct: 379 IGLELWSMTSDIFFDNFIVCGDRRVVDDWAND 410
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.94
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 99.93
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.58
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.32
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 98.34
4b1m_A185 Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil 81.36
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
Probab=100.00  E-value=7.1e-128  Score=958.88  Aligned_cols=343  Identities=38%  Similarity=0.764  Sum_probs=304.8

Q ss_pred             hhccceeeeeeccCCCccCCCeEecccccCC------CCCCcEEEeccccCCCCCCcceeeccccceeeecccCCC-cCC
Q 018039           12 FQISVSEIFFEERFDDGWRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSN   84 (362)
Q Consensus        12 ~~~~~~~~~F~E~F~~~~~~rWv~S~~~k~~------~~~G~w~~~~g~~~g~~~d~GL~~~~~a~~yaIs~~l~~-~~~   84 (362)
                      ...+++++||+|+|+++|.+|||+|+++|++      .|.|+|.+++|+++|.++|+||||+++|||||||++|++ |++
T Consensus        19 ~p~~~~~~~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~~   98 (424)
T 1jhn_A           19 APVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLF   98 (424)
T ss_dssp             CCCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECS
T ss_pred             cCCCCcceeEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCcccc
Confidence            3456799999999999999999999998763      367999999999999999999999999999999999997 999


Q ss_pred             CCCceEEEEEEeeeceeeecCceEEecccc--cccccccCCCCeeEEEcccccCCCCceEEEEEeecCCc-------ccc
Q 018039           85 KNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN-------YPI  155 (362)
Q Consensus        85 ~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~--~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~-------~~~  155 (362)
                      ++|+||||||||||++|+|||||||||+..  +++++|+++|||+||||||+|| .++||||||||+|.+       |..
T Consensus        99 ~~k~LVvQYeVk~q~~idCGGaYiKLl~~~~~~d~~~f~~~TpY~IMFGPD~CG-~~~kvH~I~~~knp~~g~~~ekh~~  177 (424)
T 1jhn_A           99 DTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAK  177 (424)
T ss_dssp             SSSCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCC
T ss_pred             CCCCEEEEEEEEecccccccceEEEeecCcccCCHhHcCCCCCceEeccCCccC-CCCeEEEEEecCCCCCCchhhhccc
Confidence            999999999999999999999999999974  7999999999999999999999 799999999999854       554


Q ss_pred             ccCC---cccccCcCceeEEEECCCCcEEEEEcCeEeccCCCccCCC--CCCCccccCCCCCCCCCCCCCccccCCCCCC
Q 018039          156 KKEL---ECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVK  230 (362)
Q Consensus       156 ~~~~---~~~~d~~tHlYTLil~pdntyei~ID~~~~~~gsl~~Dwd--~~~p~~I~DP~d~KP~DWdd~~~I~Dp~a~K  230 (362)
                      ++++   +|++|++||||||||||||||||+|||++|.+|||++||+  ++||++|+||+++||+|||++++|+||+|+|
T Consensus       178 ~~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~K  257 (424)
T 1jhn_A          178 RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVK  257 (424)
T ss_dssp             CCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC-------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCC
T ss_pred             CCcccccccccCCCceEEEEEEcCCCcEEEEECCceecccccHHhccccCCCcccccCccccCccccccccccCCcccCC
Confidence            5454   3568999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             CCCCCC--------------------CCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCC
Q 018039          231 PEGYDS--------------------IPKEIPDPKAKKPDNWDEDEDGLWK-------------------PPKIPNPAYK  271 (362)
Q Consensus       231 P~dWdd--------------------~p~~I~dP~~~kP~dwd~~~~G~W~-------------------~p~I~NP~yk  271 (362)
                      |+|||+                    +|++|+||+|+||+||++++||+|+                   +|||.||+|+
T Consensus       258 PeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~yk  337 (424)
T 1jhn_A          258 PDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYK  337 (424)
T ss_dssp             CTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCC
T ss_pred             ccccccCCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCcccc
Confidence            999973                    4779999999999999998777666                   5778888899


Q ss_pred             ccCccCcccCCCCCCcccccccCCCCCCCCCCcccccCceeEEEEeEEeecCceeeeEEecCCHHHHHHHHHHhccc-cc
Q 018039          272 GPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-RE  350 (362)
Q Consensus       272 G~W~p~~I~NP~YkG~W~p~~I~NP~y~~d~~~~~~~~i~~iG~elW~~~~g~~FDNi~i~~d~~~A~~~~~~t~~~-~~  350 (362)
                      |+|+||+|+||+|+|+|+||+|+||+|++|.++++|.+|++||||||||++||+|||||||+|+++|++++++||.. +.
T Consensus       338 G~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~k~~  417 (424)
T 1jhn_A          338 GKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKA  417 (424)
T ss_dssp             CSCCCCEEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC---
T ss_pred             CcccCCccCCCcccccccccccCCccccCCCcccccCcccEEEEEeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             ccccc
Q 018039          351 VCSSS  355 (362)
Q Consensus       351 ~E~~~  355 (362)
                      +|.++
T Consensus       418 ~e~~~  422 (424)
T 1jhn_A          418 ADGAA  422 (424)
T ss_dssp             -----
T ss_pred             hhhhc
Confidence            88653
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 362
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 1e-80
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 2e-35
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 1e-31
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 3e-14
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  244 bits (625), Expect = 1e-80
 Identities = 80/262 (30%), Positives = 121/262 (46%), Gaps = 39/262 (14%)

Query: 17  SEIFFEERFDDGWRSRWVISDWKRSEGK------AGYFKHTAGKWHGDPDDKGIQTHTDA 70
            E++F + FD G  S W++S  K+ +         G ++    K    P DKG+   + A
Sbjct: 8   GEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRA 67

Query: 71  RHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYS 127
           +H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F    PY+
Sbjct: 68  KHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYT 127

Query: 128 LMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPD 177
           +MFGPD CG   K LH I  ++     + +E   +          TDK TH YT IL PD
Sbjct: 128 IMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 186

Query: 178 ASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSI 237
            S+ IL+D    +SG++   + + P   I        +D     +I   +          
Sbjct: 187 NSFEILVDQSIVNSGNL-EPFKMTPFSAIGLELWSMTSDIFFDNFIVCGD---------- 235

Query: 238 PKEIPDPKAKKPDNWDEDEDGL 259
                    +  D+W  D  GL
Sbjct: 236 --------RRVVDDWANDGWGL 249
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.96
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 99.92
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.77
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.51
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 98.44
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 97.32
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=9.4e-82  Score=593.20  Aligned_cols=221  Identities=33%  Similarity=0.568  Sum_probs=198.6

Q ss_pred             ccceeeeeeccCCCccCCCeEecccccCCC------CCCcEEEeccccCCCCCCcceeeccccceeeecccCCC-cCCCC
Q 018039           14 ISVSEIFFEERFDDGWRSRWVISDWKRSEG------KAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKN   86 (362)
Q Consensus        14 ~~~~~~~F~E~F~~~~~~rWv~S~~~k~~~------~~G~w~~~~g~~~g~~~d~GL~~~~~a~~yaIs~~l~~-~~~~~   86 (362)
                      .+++.+||+|+|+++|.+|||+|++++++.      +.|+|.+.+++..+.++|+||||+++|||||||++|++ |++++
T Consensus         5 ~~~~~v~F~E~Fd~~~~~rWi~S~akk~~~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~~   84 (249)
T d1jhna4           5 VPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDT   84 (249)
T ss_dssp             CCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSS
T ss_pred             CCCcceeEEeccCCcccCCCEECcccccCcccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccCC
Confidence            457899999999999999999999987542      56888877777778889999999999999999999998 99999


Q ss_pred             CceEEEEEEeeeceeeecCceEEecccc--cccccccCCCCeeEEEcccccCCCCceEEEEEeecCCc------cccccC
Q 018039           87 RTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN------YPIKKE  158 (362)
Q Consensus        87 k~LVvQYeVk~q~~i~CGGaYiKLl~~~--~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~------~~~~~~  158 (362)
                      |+||||||||+|++++|||||||||+.+  +++++|+++|||+||||||+|| .++||||||||+|.+      ++++++
T Consensus        85 k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfIf~~~np~~~~~eek~~~~p  163 (249)
T d1jhna4          85 KPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRP  163 (249)
T ss_dssp             SCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCCCC
T ss_pred             CCEEEEEEeeeccCccccceEEEeecCcccCCHhHcCCCCCceEEeCCcccC-CCCEEEEEEEcCCCCCccceeeeecCC
Confidence            9999999999999999999999999864  6899999999999999999999 789999999998753      233433


Q ss_pred             ----CcccccCcCceeEEEECCCCcEEEEEcCeEeccCCCccCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCCC
Q 018039          159 ----LECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGY  234 (362)
Q Consensus       159 ----~~~~~d~~tHlYTLil~pdntyei~ID~~~~~~gsl~~Dwd~~~p~~I~DP~d~KP~DWdd~~~I~Dp~a~KP~dW  234 (362)
                          +.+++|++||||||||+|||||||+|||+++.+|+|. +|.+.||++|+||.++||+||+|+++|+||+|+||+||
T Consensus       164 ~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le-~~~~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~kpedW  242 (249)
T d1jhna4         164 DADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE-PFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDW  242 (249)
T ss_dssp             SSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC-TTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHH
T ss_pred             CccccccCcCCCcccceEEECCCCeEEEEeCCccccCCCcC-cccCCCcccCCCcccCCCCCccccccccCCCcCChhhh
Confidence                3466899999999999999999999999999999975 68899999999999999999999999999999999999


Q ss_pred             CC
Q 018039          235 DS  236 (362)
Q Consensus       235 dd  236 (362)
                      |+
T Consensus       243 de  244 (249)
T d1jhna4         243 AN  244 (249)
T ss_dssp             HH
T ss_pred             hh
Confidence            97
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure