Citrus Sinensis ID: 018040
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK64 | 1514 | ABC transporter C family | yes | no | 0.933 | 0.223 | 0.772 | 1e-170 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.988 | 0.239 | 0.734 | 1e-159 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.925 | 0.228 | 0.718 | 1e-155 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.809 | 0.194 | 0.616 | 1e-134 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.895 | 0.307 | 0.616 | 1e-133 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.928 | 0.221 | 0.610 | 1e-128 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.988 | 0.244 | 0.529 | 1e-111 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.950 | 0.236 | 0.520 | 1e-107 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.980 | 0.230 | 0.514 | 1e-100 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.980 | 0.234 | 0.511 | 1e-97 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 279/361 (77%), Positives = 328/361 (90%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
M+L DGYSRPKF+ A AM+WLCF +DMLSS+ FVFSL F++S+P GV+DP++AGLAVT+G
Sbjct: 1154 MRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYG 1213
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L+LN LQA LI LCNLEN+IISVERILQY +P+EPPLVIE++RP SWPS+GEV+I
Sbjct: 1214 LSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRD 1273
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPH+PLVLRG+TCTF GG++TGIVGRTGSGKSTLIQTLFRIVEP+AG I IDG++
Sbjct: 1274 LQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVN 1333
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
I +IGLHDLR RLSIIPQDPTMFEG++ +NLDPLEEY D++IWEALDKCQLG+EVRK E
Sbjct: 1334 ILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQ 1393
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V+ENG+NWSMGQRQLVCL RVLLK+SK+LVLDEATASVDTATDNLIQ TL +HFS
Sbjct: 1394 KLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFS 1453
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
DCTVITIAHRI+SVIDSDMVLLLS G+IEE+D+P RLLE+KSSSF++LVAEYT RS+SSF
Sbjct: 1454 DCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSSF 1513
Query: 361 E 361
+
Sbjct: 1514 D 1514
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 560 bits (1443), Expect = e-159, Method: Compositional matrix adjust.
Identities = 266/362 (73%), Positives = 315/362 (87%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
M+L D YSR +FH +AM+WLCF +D+LS++ F SL ++SVPEGV++P+ AGLAVT+
Sbjct: 1126 MRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYA 1185
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLN LQA+LI LC+LEN++ISVER+LQY+ IP+EP LVIE++RP SWP +GE+ I
Sbjct: 1186 LNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICN 1245
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRY PHLP+VLRGLTCTF GG+KTGIVGRTG GKSTLIQTLFRIVEP AG I IDGI+
Sbjct: 1246 LQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGIN 1305
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
I +IGLHDLRSRLSIIPQ+PTMFEG+V +NLDPLEEYAD++IWEALDKCQLG+E+RK E
Sbjct: 1306 ILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKEL 1365
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V+ENG+NWS+GQRQLVCL RVLLK+SKVL+LDEATASVDTATD LIQ TL QHFS
Sbjct: 1366 KLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFS 1425
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
CTVITIAHRI+SVIDSDMVLLL GLIEE DSP RLLE+KSSSF++LVAEYT S+S F
Sbjct: 1426 GCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSDSRF 1485
Query: 361 EK 362
++
Sbjct: 1486 KR 1487
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 547 bits (1409), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/362 (71%), Positives = 308/362 (85%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
M+L D YSR KFH AM+WLCF +++LS+ F SL ++S PEGV++P++AGLA+T+
Sbjct: 1104 MRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYA 1163
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLN LQA+LI LC+LEN++ISVER+LQY IP+EPPLVIE +RP SWPS+GE+ I
Sbjct: 1164 LNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICN 1223
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRY PHLP+VL GLTCTF GG+KTGIVGRTG GKSTLIQTLFRIVEP AG I IDGI+
Sbjct: 1224 LQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGIN 1283
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
I SIGLHDLRSRLSIIPQDPTMFEG++ +NLDPLEEY D++IWEALD CQLG+EVRK E
Sbjct: 1284 ILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKEL 1343
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V+ENG+NWS+GQRQLVCL RVLLK+SK+LVLDEATAS+DTATDNLIQ TL HF+
Sbjct: 1344 KLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFA 1403
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
DCTVITIAHRI+SVIDSDMVLLL GLI+E DSP RLLE++SS F++LVAEYT S S
Sbjct: 1404 DCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSSESKS 1463
Query: 361 EK 362
++
Sbjct: 1464 KR 1465
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 219/355 (61%), Positives = 283/355 (79%)
Query: 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLN 62
L+D +SRP FH+A+AM+WL F +++LS +F FSL ++++PEGV++P+IAGL VT+GL+
Sbjct: 1142 LIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLS 1201
Query: 63 LNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122
LN+LQA++I +CN EN++ISVERILQY IP+E PLVI+ RP +WP+ G + LQ
Sbjct: 1202 LNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVFRDLQ 1261
Query: 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182
VRYA H P VL+ +TC F GG K G+VGRTGSGKSTLIQ LFRIVEP+ G I ID +DI+
Sbjct: 1262 VRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDNVDIT 1321
Query: 183 SIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKL 242
IGLHDLRSRL IIPQDP +F+G++ NLDPL +Y D EIWEA+DKCQLG+ +R + +L
Sbjct: 1322 KIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAKDERL 1381
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC 302
++ V ENGENWS+GQRQLVCL RVLLKKS +LVLDEATASVD+ATD +IQ + Q F D
Sbjct: 1382 DATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1441
Query: 303 TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
TV+TIAHRI +VI+SD+VL+LS G I EFDSP +LL+ + S F++L+ EY+ RSN
Sbjct: 1442 TVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSN 1496
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/355 (61%), Positives = 282/355 (79%)
Query: 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLN 62
L+D +SRP FH+A+AM+WL F +++LS +F FSL ++++PEGV++P+IAGL VT+GL+
Sbjct: 689 LIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLS 748
Query: 63 LNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122
LN+LQA++I +CN EN++ISVERILQ+ IP+E PLVI+ RP +WP+ G + LQ
Sbjct: 749 LNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGSIVFRDLQ 808
Query: 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182
VRYA H P VL+ +TC F GG K G+VGRTGSGKSTLIQ LFRIVEP+ G I ID +DI+
Sbjct: 809 VRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIVIDNVDIT 868
Query: 183 SIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKL 242
IGLHDLRSRL IIPQD +F+G++ NLDPL +Y D EIWEALDKCQLG+ +R + KL
Sbjct: 869 KIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDVIRAKDEKL 928
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC 302
++ V ENGENWS+GQRQLVCL RVLLKKS +LVLDEATASVD+ATD +IQ + Q F D
Sbjct: 929 DATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 988
Query: 303 TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
TV+TIAHRI +VI+SD+VL+LS G I EFDSP +LL+ + S F++L+ EY+ RSN
Sbjct: 989 TVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSN 1043
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/357 (61%), Positives = 275/357 (77%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
+ L+D + RP F AA++WLC +++LS+++F F + ++S P G +DP++AGLAVT+G
Sbjct: 1153 LYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYG 1212
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLN + I C LEN+IIS+ERI QY I E P +IE RP SWP+ G +++
Sbjct: 1213 LNLNGRLSRWILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVD 1272
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
++VRYA +LP VL G++C F GG K GIVGRTGSGKSTLIQ LFR++EPTAG I ID ID
Sbjct: 1273 VKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNID 1332
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
IS IGLHDLRSRL IIPQDPT+FEG++ NLDPLEE++D++IWEALDK QLG+ VR +
Sbjct: 1333 ISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDL 1392
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V ENG+NWS+GQRQLV L R LLK++K+LVLDEATASVDTATDNLIQ + F
Sbjct: 1393 KLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFE 1452
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
DCTV TIAHRI +VIDSD+VL+LS G + EFD+P RLLE+KSS F +LV EY+ RS
Sbjct: 1453 DCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRST 1509
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/361 (52%), Positives = 258/361 (71%), Gaps = 3/361 (0%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
+ LVD + F AAM+W+ I+ L ++ +I +P+G + P + GL++++
Sbjct: 1100 LNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPGLVGLSLSYA 1159
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L L Q L C L N IISVERI QYM IP EPP +I+ RP SWPS G + +
Sbjct: 1160 LTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWPSNGTIHLQE 1219
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
L++RY P+ PLVL+G++CTF G + G+VGRTGSGKSTLI LFR+VEP +G I IDGID
Sbjct: 1220 LKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCILIDGID 1279
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
IS IGL DLR +LSIIPQ+PT+F G + NLDPL Y+D+EIW+AL+KCQL +
Sbjct: 1280 ISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALEKCQLKTTISNLPN 1339
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V++ GENWS+GQRQL CL RVLLK++K+LVLDEATAS+D+ATD +IQ + + F+
Sbjct: 1340 KLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAIIQRIIREEFA 1399
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY--TQRSNS 358
DCTVIT+AHR+ +VIDSDMV++LS+G + E++ P++L+E S F++LVAEY + R NS
Sbjct: 1400 DCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLMET-DSYFSKLVAEYWASCRGNS 1458
Query: 359 S 359
S
Sbjct: 1459 S 1459
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/359 (52%), Positives = 251/359 (69%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
+ L+D + P FH AA +WL ++ +S+I+ + F +I +P G G+A+++G
Sbjct: 1092 LTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYG 1151
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L+LNM + C L N IISVER+ QY + E P VIE +RP +WP G V+I
Sbjct: 1152 LSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISD 1211
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQ+RY PLVL+G++CTF GG K GIVGRTGSGK+TLI LFR+VEP G I +DG+D
Sbjct: 1212 LQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVD 1271
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
IS IG+HDLRSR IIPQDPT+F G+V NLDPL +++D EIWE L KCQL V++ E
Sbjct: 1272 ISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKEN 1331
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
L+S V E+G NWSMGQRQL CL R +L++S+VLVLDEATAS+D ATD ++Q T+ + F+
Sbjct: 1332 GLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFA 1391
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSS 359
DCTVIT+AHRI +V+D MVL +S G I E+D P +L+++++S F +LV EY NS+
Sbjct: 1392 DCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYWSHYNSA 1450
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/356 (51%), Positives = 255/356 (71%), Gaps = 1/356 (0%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
+K V+ R FH + +WL F ++++ S + S F++ +P ++ P GL++++G
Sbjct: 1182 VKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYG 1241
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L+LN + I C +EN+++SVERI Q+ IP E I+ SRP +WP +G + +
Sbjct: 1242 LSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLED 1301
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
++VRY P+ PLVL+GLT GG K G+VGRTGSGKSTLIQ LFR+VEP+ G I IDGID
Sbjct: 1302 VKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGID 1361
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
I ++GLHDLRSR IIPQ+P +FEG+V +N+DP E+Y+DEEIW++L++CQL + V
Sbjct: 1362 ICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPE 1421
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V +NGENWS+GQRQL+CL RV+LK+S++L LDEATASVD+ TD +IQ + + FS
Sbjct: 1422 KLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFS 1481
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRS 356
DCT+I+IAHRI +V+D D VL++ G +E+DSP RLLE + S FA LV EY RS
Sbjct: 1482 DCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLE-RQSLFAALVQEYALRS 1536
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (915), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/356 (51%), Positives = 253/356 (71%), Gaps = 1/356 (0%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
+K V+ R FH + +WL F ++++ S + S F++ +P V+ P GL++++G
Sbjct: 1159 VKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYG 1218
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L+LN + I C +EN+++SVERI Q+ IP+E + + P +WP G V +
Sbjct: 1219 LSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLED 1278
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
L+VRY P+ PLVL+G+T GG K G+VGRTGSGKSTLIQ LFR+VEP+ G I IDGID
Sbjct: 1279 LKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGID 1338
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
IS++GLHDLRSR IIPQ+P +FEG+V +N+DP E+Y+DEEIW++L++CQL + V
Sbjct: 1339 ISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPE 1398
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V +NGENWS+GQRQL+CL RV+LK+S++L LDEATASVD+ TD +IQ + + F+
Sbjct: 1399 KLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFA 1458
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRS 356
CT+I+IAHRI +V+D D VL++ G +EFDSP RLLE + S FA LV EY RS
Sbjct: 1459 SCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE-RPSLFAALVQEYALRS 1513
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | ||||||
| 356499431 | 2054 | PREDICTED: ABC transporter C family memb | 0.919 | 0.162 | 0.828 | 1e-178 | |
| 356501620 | 1493 | PREDICTED: ABC transporter C family memb | 0.953 | 0.231 | 0.820 | 1e-176 | |
| 356566246 | 1490 | PREDICTED: ABC transporter C family memb | 0.953 | 0.231 | 0.828 | 1e-176 | |
| 356553519 | 1494 | PREDICTED: ABC transporter C family memb | 0.958 | 0.232 | 0.814 | 1e-175 | |
| 296089878 | 1284 | unnamed protein product [Vitis vinifera] | 0.997 | 0.281 | 0.817 | 1e-175 | |
| 359494289 | 1488 | PREDICTED: ABC transporter C family memb | 0.955 | 0.232 | 0.817 | 1e-174 | |
| 296089879 | 832 | unnamed protein product [Vitis vinifera] | 0.991 | 0.431 | 0.822 | 1e-174 | |
| 224061172 | 1488 | multidrug resistance protein ABC transpo | 0.997 | 0.242 | 0.823 | 1e-174 | |
| 359494291 | 2021 | PREDICTED: ABC transporter C family memb | 0.955 | 0.171 | 0.822 | 1e-174 | |
| 388519095 | 510 | unknown [Lotus japonicus] | 1.0 | 0.709 | 0.806 | 1e-173 |
| >gi|356499431|ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/362 (82%), Positives = 329/362 (90%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKL DGYSRPKF+IA AM+WLCF +DMLSSI F FSL F+IS+P+G +DP +AGLAVT+G
Sbjct: 1689 MKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPQGFIDPGLAGLAVTYG 1748
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNM+QA +I LCN+EN+IISVERILQY CIP EP LV++ +RP+ SWPS GEVDI
Sbjct: 1749 LNLNMVQAWMIWNLCNMENKIISVERILQYTCIPCEPSLVVDDNRPDPSWPSYGEVDIQD 1808
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
L+VRYAPHLPLVLRGLTC F GG+KTGIVGRTGSGKSTLIQTLFRIVEPTAG + ID I+
Sbjct: 1809 LKVRYAPHLPLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDNIN 1868
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
ISSIGLHDLRSRLSIIPQDPTMFEG+V NNLDPLEEY DE+IWEALDKCQLG+EVRK EG
Sbjct: 1869 ISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEG 1928
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S+VTENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL QHFS
Sbjct: 1929 KLDSKVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS 1988
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
D TVITIAHRITSV+DSDMVLLLS GLIEE+D+PTRLLENKSSSFAQLVAEYT RSNSSF
Sbjct: 1989 DSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTRLLENKSSSFAQLVAEYTMRSNSSF 2048
Query: 361 EK 362
EK
Sbjct: 2049 EK 2050
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501620|ref|XP_003519622.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/362 (82%), Positives = 327/362 (90%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKL DGYSRP F+IA A++WLCF +DMLSSI F FSL F+IS+P+G +DP +AGLAVT+G
Sbjct: 1128 MKLTDGYSRPMFNIAGAVEWLCFRLDMLSSITFAFSLIFLISIPQGFIDPGLAGLAVTYG 1187
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLN++Q +I LCN+EN+IISVERILQY CIP EP LV++ +RP+ SWPS GEVDI
Sbjct: 1188 LNLNIVQGWMIWNLCNMENKIISVERILQYTCIPCEPSLVVDDNRPDPSWPSYGEVDIQD 1247
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
L+VRYAPHLPLVLRGLTC F GG+KTGIVGRTGSGKSTLIQTLFRIVEPTAG + ID I+
Sbjct: 1248 LKVRYAPHLPLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDSIN 1307
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
ISSIGLHDLRSRLSIIPQDPTMFEG+V NNLDPLEEY DEEIWEALDKCQLG+EVRK EG
Sbjct: 1308 ISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEEIWEALDKCQLGDEVRKKEG 1367
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S+VTENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL QHFS
Sbjct: 1368 KLDSKVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS 1427
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
D TVITIAHRITSV+DSDMVLLLS GLIEE+D+PTRLLENKSSSFAQLVAEYT RSNSSF
Sbjct: 1428 DSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTRLLENKSSSFAQLVAEYTMRSNSSF 1487
Query: 361 EK 362
EK
Sbjct: 1488 EK 1489
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566246|ref|XP_003551345.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/362 (82%), Positives = 325/362 (89%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKL DGYSRPKF+IA AM+WLCF +DMLSSI F FSL F+IS+P G++DP IAGLAVT+G
Sbjct: 1125 MKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPTGIIDPGIAGLAVTYG 1184
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNM+QA +I LCNLEN+IISVERILQY IP EPPLV+E +RP+ SWP GEVDI
Sbjct: 1185 LNLNMIQAWVIWNLCNLENKIISVERILQYTSIPCEPPLVVEDNRPDPSWPLYGEVDIQD 1244
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPHLPLVLRGLTC F GGMKTGIVGRTGSGKSTLIQTLFRIVEPT+G + ID I+
Sbjct: 1245 LQVRYAPHLPLVLRGLTCKFHGGMKTGIVGRTGSGKSTLIQTLFRIVEPTSGQVMIDNIN 1304
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
ISSIGLHDLRSRLSIIPQDPTMFEG+V NNLDPLEEY DE+IWEALDKCQLG+EVRK EG
Sbjct: 1305 ISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEG 1364
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V+ENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL QHFS
Sbjct: 1365 KLDSTVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS 1424
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
D TVITIAHRITSV+DSDMVLLLS GLIEE+D+PT LLENKSSSFAQLVAEYT RS SSF
Sbjct: 1425 DSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTTLLENKSSSFAQLVAEYTMRSKSSF 1484
Query: 361 EK 362
EK
Sbjct: 1485 EK 1486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553519|ref|XP_003545103.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/362 (81%), Positives = 327/362 (90%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKL DGYSRPKF+IA AM+WLCF +DMLSSI F FSL F+IS+P+G +DP +AGLAVT+G
Sbjct: 1129 MKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLVFLISIPQGFIDPGLAGLAVTYG 1188
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNM+QA +I LCN+EN+IISVERILQY CI +EPPLV++ +RP+ SWPS GEV I
Sbjct: 1189 LNLNMIQAWMIWNLCNMENKIISVERILQYTCISSEPPLVVDENRPDPSWPSYGEVGIQD 1248
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPHLPLVLRGLTC F GG+KTGIVGRTGSGKSTLIQTLFRIV+PT+G I ID I+
Sbjct: 1249 LQVRYAPHLPLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVQPTSGQIMIDSIN 1308
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
ISSIGLHDLRSRLSIIPQDPTMFEG+V NNLDPLEEY+DE+IWEALDKCQLG+EVRK EG
Sbjct: 1309 ISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYSDEQIWEALDKCQLGDEVRKKEG 1368
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S+VTENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL Q FS
Sbjct: 1369 KLDSKVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQQFS 1428
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
TVITIAHRITSV+ SDMVLLLS GLIEE+D+PTRL+ENKSSSFAQLVAEYT RSNSSF
Sbjct: 1429 GSTVITIAHRITSVLHSDMVLLLSQGLIEEYDTPTRLIENKSSSFAQLVAEYTMRSNSSF 1488
Query: 361 EK 362
EK
Sbjct: 1489 EK 1490
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089878|emb|CBI39697.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/361 (81%), Positives = 324/361 (89%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKL+DGY RPKF IA A++WLCF +DMLSS+ F FSL F+ISVPEGV+DP +AGL VT+G
Sbjct: 919 MKLIDGYIRPKFSIAGAIEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGLAGLTVTYG 978
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNM+ A +I CN+EN IISVERILQY IP+EPPLVIE +RP CSWPS G+VDI
Sbjct: 979 LNLNMILAWVIWNFCNMENIIISVERILQYTSIPSEPPLVIEENRPACSWPSHGQVDIQD 1038
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPH+PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP AG I IDG +
Sbjct: 1039 LQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQITIDGTN 1098
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
ISSIGLHDLRSRLSIIPQDPTMFEG+V +NLDPLEEY+DE+IWEALDKCQLG+EVRK EG
Sbjct: 1099 ISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEG 1158
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S VTENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL QHF
Sbjct: 1159 KLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFV 1218
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
D TVITIAHRITSV+DSDMVLLL +GL+EE+D+PTRLLENKSSSFA+LVAEYT RSNSS
Sbjct: 1219 DSTVITIAHRITSVLDSDMVLLLDHGLVEEYDTPTRLLENKSSSFAKLVAEYTVRSNSSL 1278
Query: 361 E 361
E
Sbjct: 1279 E 1279
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494289|ref|XP_003634753.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/361 (81%), Positives = 324/361 (89%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKL+DGY RPKF IA A++WLCF +DMLSS+ F FSL F+ISVPEGV+DP +AGL VT+G
Sbjct: 1123 MKLIDGYIRPKFSIAGAIEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGLAGLTVTYG 1182
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNM+ A +I CN+EN IISVERILQY IP+EPPLVIE +RP CSWPS G+VDI
Sbjct: 1183 LNLNMILAWVIWNFCNMENIIISVERILQYTSIPSEPPLVIEENRPACSWPSHGQVDIQD 1242
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPH+PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP AG I IDG +
Sbjct: 1243 LQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQITIDGTN 1302
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
ISSIGLHDLRSRLSIIPQDPTMFEG+V +NLDPLEEY+DE+IWEALDKCQLG+EVRK EG
Sbjct: 1303 ISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEG 1362
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S VTENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL QHF
Sbjct: 1363 KLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFV 1422
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
D TVITIAHRITSV+DSDMVLLL +GL+EE+D+PTRLLENKSSSFA+LVAEYT RSNSS
Sbjct: 1423 DSTVITIAHRITSVLDSDMVLLLDHGLVEEYDTPTRLLENKSSSFAKLVAEYTVRSNSSL 1482
Query: 361 E 361
E
Sbjct: 1483 E 1483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089879|emb|CBI39698.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/361 (82%), Positives = 324/361 (89%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKLVDGY RPKF+IA AM+WLCF +DMLSS F FSL F+ISVPEGV+DP IAGLAVT+G
Sbjct: 467 MKLVDGYIRPKFNIAGAMEWLCFRLDMLSSATFAFSLVFLISVPEGVIDPGIAGLAVTYG 526
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNM+QA +I LCN+EN+IISVERILQY IP+EPPLV E +R CSWPS GEVDI
Sbjct: 527 LNLNMIQAWVIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQD 586
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPH+PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP AG I IDG +
Sbjct: 587 LQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTN 646
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
ISSIGLHDLRSRLSIIPQDPTMFEG+V +NLDPLEEY+DE+IWEALDKCQLG+EVRK EG
Sbjct: 647 ISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEG 706
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V ENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL QHF
Sbjct: 707 KLDSAVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFV 766
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
D TVITIAHRITSV+DSD VLLL +GLIEE+D+PTRLLENKSSSFA+LVAEYT RS+S+
Sbjct: 767 DSTVITIAHRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNL 826
Query: 361 E 361
E
Sbjct: 827 E 827
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061172|ref|XP_002300362.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222847620|gb|EEE85167.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 298/362 (82%), Positives = 323/362 (89%), Gaps = 1/362 (0%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
M + D YSRPKFH AAAM+WLCF +DM SSI F FSL F++S P+G+ DPAIAGLAVT+G
Sbjct: 1126 MIVTDAYSRPKFHAAAAMEWLCFRLDMFSSITFAFSLVFLVSFPKGI-DPAIAGLAVTYG 1184
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNMLQA +I LCN EN+IISVERILQYM IP+EPPL+IEASRPN SWPS GEV+I+
Sbjct: 1185 LNLNMLQAWVIWNLCNCENKIISVERILQYMSIPSEPPLIIEASRPNRSWPSHGEVEINN 1244
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPH+PLVLRGLTCTF GGMKTGIVGRTGSGKSTLIQTLFRIVEP AG I ID ID
Sbjct: 1245 LQVRYAPHMPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGRIMIDDID 1304
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
IS IGLHDLRSRLSIIPQDPTMFEG+V +NLDPLEEY DE+IWEALDKCQLG+EVRK E
Sbjct: 1305 ISLIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKER 1364
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V ENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDT+TDNLIQ TL QHFS
Sbjct: 1365 KLDSTVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTSTDNLIQQTLRQHFS 1424
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
DCTVITIAHRITSV+DSDMVLLLS GLIEE+DSP RLLENKSSSFAQLVAEY RS++ F
Sbjct: 1425 DCTVITIAHRITSVLDSDMVLLLSNGLIEEYDSPARLLENKSSSFAQLVAEYRVRSDTGF 1484
Query: 361 EK 362
EK
Sbjct: 1485 EK 1486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494291|ref|XP_003634754.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/361 (82%), Positives = 324/361 (89%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKLVDGY RPKF+IA AM+WLCF +DMLSS F FSL F+ISVPEGV+DP IAGLAVT+G
Sbjct: 1656 MKLVDGYIRPKFNIAGAMEWLCFRLDMLSSATFAFSLVFLISVPEGVIDPGIAGLAVTYG 1715
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNM+QA +I LCN+EN+IISVERILQY IP+EPPLV E +R CSWPS GEVDI
Sbjct: 1716 LNLNMIQAWVIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQD 1775
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPH+PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP AG I IDG +
Sbjct: 1776 LQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTN 1835
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
ISSIGLHDLRSRLSIIPQDPTMFEG+V +NLDPLEEY+DE+IWEALDKCQLG+EVRK EG
Sbjct: 1836 ISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEG 1895
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V ENGENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL QHF
Sbjct: 1896 KLDSAVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFV 1955
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
D TVITIAHRITSV+DSD VLLL +GLIEE+D+PTRLLENKSSSFA+LVAEYT RS+S+
Sbjct: 1956 DSTVITIAHRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNL 2015
Query: 361 E 361
E
Sbjct: 2016 E 2016
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388519095|gb|AFK47609.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/362 (80%), Positives = 327/362 (90%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFG 60
MKL DGYSRPKF+IA AM+WLCF +DMLSSI F FSL F+IS+P+G++DP IAGLAVT+G
Sbjct: 145 MKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPQGIIDPGIAGLAVTYG 204
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLNM+Q +I LCNLEN+IISVERILQY +P+EP LV+E ++P+ SWPS GEVD+
Sbjct: 205 LNLNMIQVWVIWNLCNLENKIISVERILQYTSVPSEPLLVVENNQPDPSWPSYGEVDVQD 264
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
LQVRYAPHLPLVLRGLTCTF GG+KTGIVGRTGSGKSTLIQTLFR+VEPTAG + ID ID
Sbjct: 265 LQVRYAPHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRLVEPTAGRVMIDSID 324
Query: 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
IS IGLH+LRSRLSIIPQDPTMFEG+V NNLDPLEEY DE+IWEALDKCQLG+EVRK EG
Sbjct: 325 ISLIGLHELRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEG 384
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
KL+S V+E+GENWSMGQRQLVCL RVLLKKSKVLVLDEATASVDTATDNLIQ TL QHFS
Sbjct: 385 KLDSTVSEDGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS 444
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
+ TVITIAHRITSVIDSDMVLLLS GLIEE+DSP +LLE+KSSSFAQLVAEYT R++SSF
Sbjct: 445 ESTVITIAHRITSVIDSDMVLLLSQGLIEEYDSPAKLLEDKSSSFAQLVAEYTMRASSSF 504
Query: 361 EK 362
EK
Sbjct: 505 EK 506
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.997 | 0.238 | 0.692 | 2.1e-132 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 1.0 | 0.242 | 0.660 | 2.4e-124 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 1.0 | 0.246 | 0.643 | 1.2e-122 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.977 | 0.233 | 0.548 | 2e-97 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.991 | 0.247 | 0.467 | 1.7e-81 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.980 | 0.230 | 0.460 | 6.8e-80 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.980 | 0.234 | 0.455 | 1.3e-78 | |
| ZFIN|ZDB-GENE-050517-25 | 1368 | abcc12 "ATP-binding cassette, | 0.933 | 0.247 | 0.395 | 9.4e-64 | |
| UNIPROTKB|J9P084 | 1257 | LOC478384 "Uncharacterized pro | 0.850 | 0.245 | 0.441 | 1.2e-63 | |
| UNIPROTKB|F1Q0Y0 | 1323 | LOC478384 "Uncharacterized pro | 0.828 | 0.226 | 0.441 | 3.8e-63 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
Identities = 250/361 (69%), Positives = 290/361 (80%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXPEGVVDPAIAGLAVTFG 60
M+L DGYSRPKF+ A AM+WLCF +DM P GV+DP++AGLAVT+G
Sbjct: 1154 MRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYG 1213
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L+LN LQA LI LCNLEN+IISVERILQY +P+EPPLVIE++RP SWPS+GEV+I
Sbjct: 1214 LSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRD 1273
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXX 180
LQVRYAPH+PLVLRG+TCTF GG++TGIVGRTGSGKSTLIQTLFRIVEP+
Sbjct: 1274 LQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVN 1333
Query: 181 XXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
HDLR RLSIIPQDPTMFEG++ +NLDPLEEY D++IWEALDKCQLG+EVRK E
Sbjct: 1334 ILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQ 1393
Query: 241 KLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFS 300
KL+S V+ENG+NWSMGQRQLVCL R DEATASVDTATDNLIQ TL +HFS
Sbjct: 1394 KLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFS 1453
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
DCTVITIAHRI+SVIDSDMVLLLS G+IEE+D+P RLLE+KSSSF++LVAEYT RS+SSF
Sbjct: 1454 DCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSSF 1513
Query: 361 E 361
+
Sbjct: 1514 D 1514
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
Identities = 239/362 (66%), Positives = 280/362 (77%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXPEGVVDPAIAGLAVTFG 60
M+L D YSR +FH +AM+WLCF +D+ PEGV++P+ AGLAVT+
Sbjct: 1126 MRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYA 1185
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLN LQA+LI LC+LEN++ISVER+LQY+ IP+EP LVIE++RP SWP +GE+ I
Sbjct: 1186 LNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICN 1245
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXX 180
LQVRY PHLP+VLRGLTCTF GG+KTGIVGRTG GKSTLIQTLFRIVEP
Sbjct: 1246 LQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGIN 1305
Query: 181 XXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
HDLRSRLSIIPQ+PTMFEG+V +NLDPLEEYAD++IWEALDKCQLG+E+RK E
Sbjct: 1306 ILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKEL 1365
Query: 241 KLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFS 300
KL+S V+ENG+NWS+GQRQLVCL R DEATASVDTATD LIQ TL QHFS
Sbjct: 1366 KLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFS 1425
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
CTVITIAHRI+SVIDSDMVLLL GLIEE DSP RLLE+KSSSF++LVAEYT S+S F
Sbjct: 1426 GCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSDSRF 1485
Query: 361 EK 362
++
Sbjct: 1486 KR 1487
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 233/362 (64%), Positives = 275/362 (75%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXPEGVVDPAIAGLAVTFG 60
M+L D YSR KFH AM+WLCF +++ PEGV++P++AGLA+T+
Sbjct: 1104 MRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYA 1163
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
LNLN LQA+LI LC+LEN++ISVER+LQY IP+EPPLVIE +RP SWPS+GE+ I
Sbjct: 1164 LNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICN 1223
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXX 180
LQVRY PHLP+VL GLTCTF GG+KTGIVGRTG GKSTLIQTLFRIVEP
Sbjct: 1224 LQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGIN 1283
Query: 181 XXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
HDLRSRLSIIPQDPTMFEG++ +NLDPLEEY D++IWEALD CQLG+EVRK E
Sbjct: 1284 ILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKEL 1343
Query: 241 KLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFS 300
KL+S V+ENG+NWS+GQRQLVCL R DEATAS+DTATDNLIQ TL HF+
Sbjct: 1344 KLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFA 1403
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 360
DCTVITIAHRI+SVIDSDMVLLL GLI+E DSP RLLE++SS F++LVAEYT S S
Sbjct: 1404 DCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSSESKS 1463
Query: 361 EK 362
++
Sbjct: 1464 KR 1465
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 194/354 (54%), Positives = 241/354 (68%)
Query: 3 LVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXPEGVVDPAIAGLAVTFGLN 62
L+D + RP F AA++WLC +++ P G +DP++AGLAVT+GLN
Sbjct: 1155 LLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLN 1214
Query: 63 LNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122
LN + I C LEN+IIS+ERI QY I E P +IE RP SWP+ G +++ ++
Sbjct: 1215 LNGRLSRWILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVK 1274
Query: 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXX 182
VRYA +LP VL G++C F GG K GIVGRTGSGKSTLIQ LFR++EPT
Sbjct: 1275 VRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDIS 1334
Query: 183 XXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKL 242
HDLRSRL IIPQDPT+FEG++ NLDPLEE++D++IWEALDK QLG+ VR + KL
Sbjct: 1335 QIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKL 1394
Query: 243 ESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFSDC 302
+S V ENG+NWS+GQRQLV L R DEATASVDTATDNLIQ + F DC
Sbjct: 1395 DSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDC 1454
Query: 303 TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRS 356
TV TIAHRI +VIDSD+VL+LS G + EFD+P RLLE+KSS F +LV EY+ RS
Sbjct: 1455 TVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRS 1508
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-81, P = 1.7e-81
Identities = 168/359 (46%), Positives = 219/359 (61%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXPEGVVDPAIAGLAVTFG 60
+ L+D + P FH AA +WL ++ P G G+A+++G
Sbjct: 1092 LTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYG 1151
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L+LNM + C L N IISVER+ QY + E P VIE +RP +WP G V+I
Sbjct: 1152 LSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISD 1211
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXX 180
LQ+RY PLVL+G++CTF GG K GIVGRTGSGK+TLI LFR+VEP
Sbjct: 1212 LQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVD 1271
Query: 181 XXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
HDLRSR IIPQDPT+F G+V NLDPL +++D EIWE L KCQL V++ E
Sbjct: 1272 ISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKEN 1331
Query: 241 KLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFS 300
L+S V E+G NWSMGQRQL CL R DEATAS+D ATD ++Q T+ + F+
Sbjct: 1332 GLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFA 1391
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSS 359
DCTVIT+AHRI +V+D MVL +S G I E+D P +L+++++S F +LV EY NS+
Sbjct: 1392 DCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYWSHYNSA 1450
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 6.8e-80, P = 6.8e-80
Identities = 164/356 (46%), Positives = 225/356 (63%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXPEGVVDPAIAGLAVTFG 60
+K V+ R FH + +WL F +++ P ++ P GL++++G
Sbjct: 1182 VKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYG 1241
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L+LN + I C +EN+++SVERI Q+ IP E I+ SRP +WP +G + +
Sbjct: 1242 LSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLED 1301
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXX 180
++VRY P+ PLVL+GLT GG K G+VGRTGSGKSTLIQ LFR+VEP+
Sbjct: 1302 VKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGID 1361
Query: 181 XXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
HDLRSR IIPQ+P +FEG+V +N+DP E+Y+DEEIW++L++CQL + V
Sbjct: 1362 ICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPE 1421
Query: 241 KLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFS 300
KL+S V +NGENWS+GQRQL+CL R DEATASVD+ TD +IQ + + FS
Sbjct: 1422 KLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFS 1481
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRS 356
DCT+I+IAHRI +V+D D VL++ G +E+DSP RLLE + S FA LV EY RS
Sbjct: 1482 DCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLE-RQSLFAALVQEYALRS 1536
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 1.3e-78, P = 1.3e-78
Identities = 162/356 (45%), Positives = 222/356 (62%)
Query: 1 MKLVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXPEGVVDPAIAGLAVTFG 60
+K V+ R FH + +WL F +++ P V+ P GL++++G
Sbjct: 1159 VKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYG 1218
Query: 61 LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHG 120
L+LN + I C +EN+++SVERI Q+ IP+E + + P +WP G V +
Sbjct: 1219 LSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLED 1278
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXX 180
L+VRY P+ PLVL+G+T GG K G+VGRTGSGKSTLIQ LFR+VEP+
Sbjct: 1279 LKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGID 1338
Query: 181 XXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
HDLRSR IIPQ+P +FEG+V +N+DP E+Y+DEEIW++L++CQL + V
Sbjct: 1339 ISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPE 1398
Query: 241 KLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFS 300
KL+S V +NGENWS+GQRQL+CL R DEATASVD+ TD +IQ + + F+
Sbjct: 1399 KLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFA 1458
Query: 301 DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRS 356
CT+I+IAHRI +V+D D VL++ G +EFDSP RLLE + S FA LV EY RS
Sbjct: 1459 SCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE-RPSLFAALVQEYALRS 1513
|
|
| ZFIN|ZDB-GENE-050517-25 abcc12 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 9.4e-64, P = 9.4e-64
Identities = 135/341 (39%), Positives = 196/341 (57%)
Query: 16 AAMQWLCFHIDMXXXXXXXXXXXXXXXXPEGVVDPAIAGLAVTFGLNLNMLQASLISKLC 75
A +WL F +D+ P ++P++ GLA+++ + L + ++
Sbjct: 1026 AGTRWLSFWLDVLSATVTLIVSLFVVLSPNETINPSLKGLALSYTIQLTGILQFVVRLST 1085
Query: 76 NLENRIISVERILQYM--CIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVL 133
+E + SVER+L+Y+ C+ P V +A+ P WP +G + +RY + P+VL
Sbjct: 1086 EVEAKFTSVERLLEYITSCVSEGPRRVKDANIP-AGWPQEGTITFKNYSMRYRDNTPIVL 1144
Query: 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRL 193
L T G K GIVGRTGSGKS+L LFR+ EP DLRS+L
Sbjct: 1145 DNLNITIRPGEKLGIVGRTGSGKSSLGVALFRLAEPAEGTILIDDMDICKLGLKDLRSQL 1204
Query: 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253
S+IPQDP +F G+V NLDP Y DEE+W AL+K + + + K KL+S V ENGEN+
Sbjct: 1205 SVIPQDPVLFIGTVRYNLDPFNNYKDEELWLALEKTYMKDTISKLPEKLQSPVVENGENF 1264
Query: 254 SMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313
S+G+RQL+C+AR DEATAS+D+ TD+LIQHT+ F CT++TIAHRI +
Sbjct: 1265 SVGERQLMCMARALLRNSKIILLDEATASIDSETDSLIQHTIRDGFQHCTMLTIAHRINT 1324
Query: 314 VIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354
V++SD +L++ G + EFD P L++ +S FA L+A Q
Sbjct: 1325 VLESDRILVMDQGKVIEFDPPQDLIQRPNSLFASLLAAANQ 1365
|
|
| UNIPROTKB|J9P084 LOC478384 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 137/310 (44%), Positives = 185/310 (59%)
Query: 48 VDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPN 107
+D AI GL++++ LN+ + K C +E +S+ER+ +Y + E P ++ + RP
Sbjct: 946 IDSAIVGLSISYALNITQSLNFWVRKACEIETNAVSIERVCEYENMNKEAPWIM-SKRPP 1004
Query: 108 CSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167
WP +G V+ Q RY L L L+ +T G K GIVGRTG+GKSTL LFRIV
Sbjct: 1005 SQWPDKGIVEFINYQARYRDDLGLALQDITFQTHGEEKIGIVGRTGAGKSTLSNCLFRIV 1064
Query: 168 EPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALD 227
E + HDLR +L+IIPQDP +F G++ NLDPL++Y+D E+WE L+
Sbjct: 1065 ERSGGKIIIDGIDISTIGLHDLRGKLNIIPQDPVLFSGTLQMNLDPLDKYSDSELWEVLE 1124
Query: 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT 287
C L V+ KL ++E GEN S+GQRQLVCLAR DEATAS+D T
Sbjct: 1125 LCHLKEFVQSLPEKLLHEISEGGENLSVGQRQLVCLARALLRKTKILILDEATASIDFKT 1184
Query: 288 DNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
DNL+Q T+ + FSDCT++TIAHR+ S+IDSD VL+L G I EF++P L+ K F
Sbjct: 1185 DNLVQTTIRKEFSDCTILTIAHRLHSIIDSDRVLVLDSGRITEFETPQNLICRKGLFFEM 1244
Query: 348 LV-AEYTQRS 356
L A TQ S
Sbjct: 1245 LTEAGITQDS 1254
|
|
| UNIPROTKB|F1Q0Y0 LOC478384 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 3.8e-63, P = 3.8e-63
Identities = 133/301 (44%), Positives = 181/301 (60%)
Query: 48 VDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPN 107
+D AI GL++++ LN+ + K C +E +S+ER+ +Y + E P ++ + RP
Sbjct: 1018 IDSAIVGLSISYALNITQSLNFWVRKACEIETNAVSIERVCEYENMNKEAPWIM-SKRPP 1076
Query: 108 CSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167
WP +G V+ Q RY L L L+ +T G K GIVGRTG+GKSTL LFRIV
Sbjct: 1077 SQWPDKGIVEFINYQARYRDDLGLALQDITFQTHGEEKIGIVGRTGAGKSTLSNCLFRIV 1136
Query: 168 EPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALD 227
E + HDLR +L+IIPQDP +F G++ NLDPL++Y+D E+WE L+
Sbjct: 1137 ERSGGKIIIDGIDISTIGLHDLRGKLNIIPQDPVLFSGTLQMNLDPLDKYSDSELWEVLE 1196
Query: 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT 287
C L V+ KL ++E GEN S+GQRQLVCLAR DEATAS+D T
Sbjct: 1197 LCHLKEFVQSLPEKLLHEISEGGENLSVGQRQLVCLARALLRKTKILILDEATASIDFKT 1256
Query: 288 DNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
DNL+Q T+ + FSDCT++TIAHR+ S+IDSD VL+L G I EF++P L+ K F
Sbjct: 1257 DNLVQTTIRKEFSDCTILTIAHRLHSIIDSDRVLVLDSGRITEFETPQNLICRKGLFFEM 1316
Query: 348 L 348
L
Sbjct: 1317 L 1317
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LK64 | AB3C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7728 | 0.9337 | 0.2232 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 362 | |||
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-126 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-104 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-98 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-95 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-92 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-81 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-75 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-67 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-62 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-59 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-57 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-54 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-53 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 9e-50 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-49 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-47 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-43 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-42 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-41 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-40 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-40 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-40 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-39 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-39 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-38 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-38 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-38 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-37 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-35 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-34 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-34 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-33 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-33 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-33 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-31 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-31 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-30 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-29 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-27 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-27 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-27 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-26 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-26 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-24 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-23 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-23 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-23 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-23 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-23 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-23 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 9e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-22 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-21 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-20 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-19 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-19 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-19 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-18 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-18 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-18 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-18 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-18 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-18 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-17 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-17 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-17 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 9e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-16 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-16 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 9e-16 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-15 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-15 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-15 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-15 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 8e-15 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 8e-15 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 8e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-14 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-14 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-14 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-14 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-14 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-14 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-13 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-13 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-13 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-13 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 7e-13 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 9e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-12 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-12 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-12 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-12 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-12 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-12 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-12 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-11 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-11 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-11 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-11 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-11 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-10 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-10 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-10 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-10 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 8e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-09 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-09 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-09 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-09 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-07 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 7e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 5e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 8e-06 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-05 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-05 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-05 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 7e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-04 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-04 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-04 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 7e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-04 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.002 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.002 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.003 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 361 bits (928), Expect = e-126
Identities = 128/221 (57%), Positives = 169/221 (76%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
G+++ + +RY P+LP VL+ ++ + G K GIVGRTGSGKS+L+ LFR+VE ++G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN 233
I IDG+DIS IGLHDLRSR+SIIPQDP +F G++ +NLDP EY+DEE+W+AL++ L
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
V G L++ V E GEN S+GQRQL+CLAR LL+KSK+LVLDEATASVD TD LIQ
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 294 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSP 334
T+ + F DCTV+TIAHR+ ++IDSD +L+L G + EFDSP
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (857), Expect = e-104
Identities = 148/311 (47%), Positives = 210/311 (67%), Gaps = 11/311 (3%)
Query: 54 GLAVTFGLNL-NMLQASLISKLCNL-ENRIISVERILQYMCIPNEPPLVIEASRPNCSWP 111
GL +++ LN+ ++L A L +L +L EN + +VER+ Y+ +P+E PLVIE +RP WP
Sbjct: 1176 GLLLSYALNITSLLTAVL--RLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWP 1233
Query: 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171
S G + + +RY P LP VL GL+ K GIVGRTG+GKS+++ LFRIVE
Sbjct: 1234 SSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 172 GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQL 231
G I IDG DIS GL DLR L IIPQ P +F G+V NLDP E+ D ++WE+L++ L
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHL 1353
Query: 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
+ +R+N L++ V+E GEN+S+GQRQL+ LAR LL++SK+LVLDEATA+VD TD LI
Sbjct: 1354 KDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413
Query: 292 QHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV-- 349
Q T+ + F CT++ IAHR+ ++ID D +L+L G + EFD+P LL N+ S+F+++V
Sbjct: 1414 QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQS 1473
Query: 350 -----AEYTQR 355
A+Y +
Sbjct: 1474 TGAANAQYLRS 1484
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = 2e-98
Identities = 149/339 (43%), Positives = 210/339 (61%), Gaps = 3/339 (0%)
Query: 4 VDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFS-LFFIISVPEGVVDPAIAGLAVTFGLN 62
VD + + A +WL ++ + + I +F+ LF +IS + + GL+V++ L
Sbjct: 1174 VDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVIS--RHSLSAGLVGLSVSYSLQ 1231
Query: 63 LNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122
+ L+ +E I++VER+ +Y E P I+ + P WP +G V+
Sbjct: 1232 VTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYC 1291
Query: 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182
+RY L LVLR + T GG K GIVGRTG+GKS+L LFRI E G I IDG++I+
Sbjct: 1292 LRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIA 1351
Query: 183 SIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKL 242
IGLHDLR +++IIPQDP +F GS+ NLDP +Y+DEE+W AL+ L V KL
Sbjct: 1352 KIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKL 1411
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC 302
+ E GEN S+GQRQLVCLAR LL+K+K+LVLDEATA+VD TDNLIQ T+ F DC
Sbjct: 1412 DHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDC 1471
Query: 303 TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENK 341
TV+TIAHR+ +++D V++L G + EF +P+ LL+ +
Sbjct: 1472 TVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQR 1510
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 2e-95
Identities = 121/225 (53%), Positives = 158/225 (70%), Gaps = 18/225 (8%)
Query: 110 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169
WP GE+++ L VRYAP LP VL+ ++ G K GIVGRTG+GKSTLI LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 170 TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKC 229
G I IDGIDIS+I L DLRS L+IIPQDPT+F G++ +NLDP +EY+DEEI+ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL--- 117
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289
RV+E G N S GQRQL+CLAR LLK+ +VLVLDEATAS+D ATD
Sbjct: 118 ---------------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSP 334
LIQ T+ + F++ T++TIAHR+ ++ID D +L++ G ++E+D P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 300 bits (769), Expect = 6e-92
Identities = 136/299 (45%), Positives = 201/299 (67%)
Query: 51 AIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSW 110
+ GL +++ LN+ L + ++ + EN + SVER+ Y+ +P+E +IE +RP W
Sbjct: 1170 STMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW 1229
Query: 111 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170
PS+G + + +RY P LP VL GL+ K G+VGRTG+GKS+++ LFRIVE
Sbjct: 1230 PSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289
Query: 171 AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQ 230
G I ID D++ GL DLR LSIIPQ P +F G+V N+DP E+ D ++WEAL++
Sbjct: 1290 KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAH 1349
Query: 231 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 290
+ + + +N L++ V+E GEN+S+GQRQL+ LAR LL++SK+LVLDEATASVD TD+L
Sbjct: 1350 IKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409
Query: 291 IQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
IQ T+ + F CT++ IAHR+ ++ID D +L+LS G + E+DSP LL +S+F ++V
Sbjct: 1410 IQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 249 bits (636), Expect = 1e-81
Identities = 122/236 (51%), Positives = 165/236 (69%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
GE+ IH L VRY +L VL+ + G K GI GRTGSGKS+L FR+V+ G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN 233
I IDGIDIS + LH LRSRLSII QDP +F GS+ NLDP + D+ +WEAL+ QL N
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
V+ G L++ VTE GEN+S+GQRQL CLAR ++KS +L++DEATAS+D AT+N++Q
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 294 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
+ F+D TV+TIAHR+++++D+D+VL+LS G++ E D+P LL + FA LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 4e-75
Identities = 137/365 (37%), Positives = 203/365 (55%), Gaps = 31/365 (8%)
Query: 16 AAMQWLCFHIDMLSSII-FVFSLFFIISVPEGV--VDPAIAGLAVTFGLNLNMLQASLIS 72
A +WL ++ LS+I+ V +L +I + + L++T + L+
Sbjct: 1179 VANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVR 1238
Query: 73 KLCNLENRIISVERILQYM-CIPNE--PPL---------------------VIEASRPNC 108
++ +E + SVER+L Y +P+E P L VIE + P
Sbjct: 1239 QVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTS 1298
Query: 109 SWP---SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165
+ P G + G+Q+RY LPLVLRG++ K GIVGRTGSGKSTL+ T R
Sbjct: 1299 AAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR 1358
Query: 166 IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEA 225
+VE G I ++G +I + GL +LR + S+IPQDP +F+G+V N+DP E + E+W A
Sbjct: 1359 MVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAA 1418
Query: 226 LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK-SKVLVLDEATASVD 284
L+ L V ++SRV E G N+S+GQRQL+C+AR LLKK S +++DEATA++D
Sbjct: 1419 LELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478
Query: 285 TATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSS 344
A D IQ T+ FS TVITIAHR+ +V D ++++ +G + E SP L+ N+ S
Sbjct: 1479 PALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSI 1538
Query: 345 FAQLV 349
F +V
Sbjct: 1539 FHSMV 1543
|
Length = 1560 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 5e-67
Identities = 109/348 (31%), Positives = 174/348 (50%), Gaps = 14/348 (4%)
Query: 8 SRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQ 67
SR + +A M L + + ++ F ++S G + + + L L
Sbjct: 232 SRLEALLAPLMLLL---SSLGTVLVLALGGFLVLS---GSLTVGALAAFILYLLRLLTPI 285
Query: 68 ASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAP 127
L + L+ + ER+ + + +E P V + P+ + G ++ + Y
Sbjct: 286 LQLGEVVSLLQRASAAAERLFELL---DEEPEVED--PPDPLKDTIGSIEFENVSFSYPG 340
Query: 128 HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 187
P VL+ ++ + G K IVG +GSGKSTLI+ L R+ +PT+G I IDGIDI I L
Sbjct: 341 KKP-VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399
Query: 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRV 246
LR R+ I+ QDP +F G++ N+ A DEEI EAL + ++ V
Sbjct: 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV 459
Query: 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVIT 306
E G N S GQRQ + +AR LL+ +L+LDEAT+++DT T+ LIQ L + T +
Sbjct: 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519
Query: 307 IAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354
IAHR++++ ++D +++L G I E + LL K +A+L
Sbjct: 520 IAHRLSTIKNADRIIVLDNGRIVERGTHEELL-AKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 1e-62
Identities = 119/358 (33%), Positives = 200/358 (55%), Gaps = 28/358 (7%)
Query: 12 FHIAAAMQWLCFHIDMLSSIIFVFSLFFI----ISVPEGVVDPAIAGLAVTFGLN-LNML 66
F + ++W ID+ +F FFI I++ G+ +T +N L+ L
Sbjct: 1102 FLYLSTLRWFQMRIDI------IFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTL 1155
Query: 67 QASLISKLCNLENRIISVERILQYMCIPNEPP--------------LVIEASRPNCSWPS 112
Q ++ S + +++ + SV R+ +++ +P E P LVIE WPS
Sbjct: 1156 QWAVNSSI-DVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPS 1214
Query: 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
G++D+ GL +Y VL+ L+ + GG + G++GRTGSGKSTL+ L R++ T G
Sbjct: 1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEG 1273
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLG 232
I IDG+ +S+ L R +IPQ +F G+ NLDP E+++DEEIW+ ++ L
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLK 1333
Query: 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292
+ + + KL+ + + G S G +QL+CLAR +L K+K+L+LDE +A +D T +I+
Sbjct: 1334 SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIR 1393
Query: 293 HTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350
TL Q FS+CTVI HR+ ++++ L++ ++++DS +LL N++S F Q ++
Sbjct: 1394 KTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAMS 1450
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 1e-59
Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 2/229 (0%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
GE++ + Y P VL+ + + G IVG TG+GK+TLI L R +P G
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDK-CQLG 232
I IDGIDI I LRS + ++ QD +F G++ N+ A +E K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292
+ + K ++ + ENG N S G+RQL+ +AR +L+ K+L+LDEAT+++DT T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 293 HTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENK 341
L + T I IAHR++++ ++D +L+L G I E + LL K
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 6e-57
Identities = 102/300 (34%), Positives = 153/300 (51%), Gaps = 16/300 (5%)
Query: 64 NMLQA---SLISKLCNLENRI----ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEV 116
NML S I++L L +++ER+ + + PP QGE+
Sbjct: 416 NMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL---DTPPEQEGDKTLIHLPKLQGEI 472
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
+ + RY P P VL L+ G K IVGR+GSGKSTL++ L + +P G I +
Sbjct: 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532
Query: 177 DGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYADEEIWEALDKCQLGN 233
DG+D++ I L LR ++ + QDP +F GS+ N+ +P E DEEI EA
Sbjct: 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHE 590
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
+ ++ V E G N S GQRQ + LAR LL K K+L+LDEAT+++D T+ +I
Sbjct: 591 FIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650
Query: 294 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353
L Q TVI IAHR++++ +D +++L G I E L + +A+L +
Sbjct: 651 NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE-QGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 1e-54
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 41/208 (19%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++ + Y VL+ ++ T G K IVG +GSGKSTL++ L R+ +PT+G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEV 235
IDG+D+ + L LR ++ +PQDP +F G++ N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 236 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295
S GQRQ + +AR LL+ +L+LDEAT+++D T+ LI L
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 296 GQHFSDCTVITIAHRITSVIDSDMVLLL 323
TVI IAHR++++ D+D +++L
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVL 167
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 8e-53
Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 4/255 (1%)
Query: 102 EASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ 161
+ + E+ + L RY P L L T G T +VG +G+GKSTL+
Sbjct: 307 SGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLN 365
Query: 162 TLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-DE 220
L + PT G I ++GID+ + R ++S + Q+P +F G++ N+ A DE
Sbjct: 366 LLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDE 425
Query: 221 EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280
EI ALD+ L V K +G L++ + E G S GQ Q + LAR LL + +L+LDE T
Sbjct: 426 EIIAALDQAGLLEFVPKPDG-LDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT 484
Query: 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340
A +D T+ +I L + TV+ I HR+ D+D +++L G + E + L E
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544
Query: 341 KSSSFAQLVAEYTQR 355
+ +A L+ + R
Sbjct: 545 Q-GLYANLLKQQEGR 558
|
Length = 559 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 2e-52
Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 11/229 (4%)
Query: 125 YAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 184
Y P P VL+ ++ T G K IVG +GSGKST+++ LFR + ++G I IDG DI +
Sbjct: 10 YDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV 68
Query: 185 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-----DEEIWEALDKCQLGNEVRKNE 239
L LR + ++PQD +F ++ N+ Y DEE+ EA Q+ +++ +
Sbjct: 69 TLDSLRRAIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQIHDKIMRFP 124
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299
++ V E G S G++Q V +AR +LK +L+LDEAT+++DT T+ IQ L
Sbjct: 125 DGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 300 SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348
T I IAHR+++++++D +++L G I E + LL K +A++
Sbjct: 185 KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 9e-50
Identities = 85/237 (35%), Positives = 141/237 (59%), Gaps = 2/237 (0%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
G++ + L +Y VL ++ + G + G++GRTGSGKSTL+ R++ T G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN 233
I IDG+ +S+ L R +IPQ +F G+ NLDP +++DEEIW+ ++ L +
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
+ + G+L+ + + G S G +QL+CLAR +L K+K+L+LDE +A +D T +I+
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 294 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350
TL Q F+DCTVI HRI ++++ L++ + ++DS +LL N+ S F Q ++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 3e-49
Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 1/225 (0%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
V+ + RY P VLR ++ G +VG +GSGKSTL+ + R + +G I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD-PLEEYADEEIWEALDKCQLGNE 234
IDG D+ L LR ++ ++ QD +F +V N+ EE+ EA
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 235 VRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 294
+ + ++ + E G S GQRQ + +AR LLK +L+LDEAT+++DT ++ L+Q
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 295 LGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339
L + + T IAHR++++ ++D +++L G I E + LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-47
Identities = 79/237 (33%), Positives = 139/237 (58%), Gaps = 5/237 (2%)
Query: 116 VDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
++ + RY P +P +L+GL+ T G +VG +G GKST++ L R +PT+G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-DEEIWEALDKCQLG 232
I +DG+DI + L LRS++ ++ Q+P +F+G++ N+ + A DEE+ EA K +
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIH 119
Query: 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292
+ + ++ V E G S GQ+Q + +AR LL+ K+L+LDEAT+++D ++ L+Q
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 293 HTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
L + T I IAHR++++ ++D++ +L G + E + L+ K +A+LV
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK-GVYAKLV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 5e-43
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 6/206 (2%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
G ++ + Y L ++ T G K I+GR GSGKSTL++ L + +PT+G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYADEEIWEALDKCQ 230
+ +DG DI + DLR + +PQD T+F G++ +N+ PL + DE I A +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLAD--DERILRAAELAG 118
Query: 231 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 290
+ + V K+ L+ ++ E G S GQRQ V LAR LL +L+LDE T+++D ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 291 IQHTLGQHFSDCTVITIAHRITSVID 316
++ L Q D T+I I HR S++D
Sbjct: 179 LKERLRQLLGDKTLIIITHR-PSLLD 203
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 4e-42
Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 7/253 (2%)
Query: 93 IPNEPPLVIEASRPNCSWPSQGEVDI--HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVG 150
I ++ P V + + + Y L+ T G K I+G
Sbjct: 316 ILDQKPEV----TFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILG 371
Query: 151 RTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210
R+GSGKSTL+Q L +P G I ++G++I+S+ LR +S++ Q +F G++ +N
Sbjct: 372 RSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431
Query: 211 LDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269
L A DEE+W AL + L + L + + E G S G+R+ + LAR LL
Sbjct: 432 LRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491
Query: 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIE 329
+ + +LDE T +D T+ + L +H T++ + HR+ + D +++L G I
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKII 551
Query: 330 EFDSPTRLLENKS 342
E + LL N
Sbjct: 552 EEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-41
Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 2/229 (0%)
Query: 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
+G+V+ + RY L ++ G +VGR+GSGKSTL+ + R EP +G
Sbjct: 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEALDKCQ 230
I +DG D++ L LR +++++ QD +F ++ NN+ E+ EI AL
Sbjct: 388 QILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAY 447
Query: 231 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 290
+ V K L++ + ENG S GQRQ + +AR LLK + +L+LDEAT+++D ++ L
Sbjct: 448 AQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERL 507
Query: 291 IQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339
+Q L + T + IAHR++++ +D ++++ G I E + LL
Sbjct: 508 VQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-40
Identities = 79/236 (33%), Positives = 129/236 (54%), Gaps = 7/236 (2%)
Query: 83 SVERILQYMCIPNE-PPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFL 141
+++ + + M +P E P RP QGE++ + Y L ++ T
Sbjct: 434 ALQSLDELMQLPVERPEGTRFLHRPRL----QGEIEFRNVSFAYPGQETPALDNVSLTIR 489
Query: 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201
G K I+GR GSGKSTL++ L + +PT G + +DG+DI I DLR + +PQDP
Sbjct: 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPR 549
Query: 202 MFEGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260
+F G++ +N+ YA DEEI A + + VR++ L+ ++ E G + S GQRQ
Sbjct: 550 LFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609
Query: 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID 316
V LAR LL+ +L+LDE T+++D ++ + L + + T++ + HR TS++D
Sbjct: 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR-TSLLD 664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-40
Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 1/212 (0%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L G++ T G IVG +G+GKST+++ LFR + +G I IDG DI + LR
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRR 337
Query: 192 RLSIIPQDPTMFEGSV-HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
+ I+PQD +F ++ +N + EE+ A + Q+ + ++ ++ V E G
Sbjct: 338 AIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310
S G++Q V +AR +LK +L+LDEAT+++DT T+ IQ L + + T + IAHR
Sbjct: 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHR 457
Query: 311 ITSVIDSDMVLLLSYGLIEEFDSPTRLLENKS 342
++++ID+D +++L G I E + LL
Sbjct: 458 LSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489
|
Length = 497 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 9e-40
Identities = 82/265 (30%), Positives = 140/265 (52%), Gaps = 7/265 (2%)
Query: 77 LENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGL 136
L+ +++ ER+ + M P + RP G +DI + Y VL+ +
Sbjct: 308 LQQAVVAGERVFELMDGPRQQ--YGNDDRP----LQSGRIDIDNVSFAYRDDNL-VLQNI 360
Query: 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196
+ +VG TGSGKSTL L T G I +DG +SS+ LR ++++
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420
Query: 197 PQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256
QDP + + N+ + ++E++W+AL+ QL R L + + E G N S+G
Sbjct: 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480
Query: 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID 316
Q+QL+ LARVL++ ++L+LDEATA++D+ T+ IQ L T++ IAHR++++++
Sbjct: 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE 540
Query: 317 SDMVLLLSYGLIEEFDSPTRLLENK 341
+D +L+L G E + +LL +
Sbjct: 541 ADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-39
Identities = 81/257 (31%), Positives = 132/257 (51%), Gaps = 19/257 (7%)
Query: 95 NEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGS 154
+PP I+ R +G V+ + Y V ++ G IVG TG+
Sbjct: 320 RDPPGAIDLGR------VKGAVEFDDVSFSYDNSRQGV-EDVSFEAKPGQTVAIVGPTGA 372
Query: 155 GKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL 214
GKSTLI L R+ +P +G I IDG DI ++ LR ++++ QD +F S+ +N+
Sbjct: 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 215 EEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273
A DEE+ A ++ Q + + + ++ V E G S G+RQ + +AR LLK +
Sbjct: 433 RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492
Query: 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333
L+LDEAT+++D T+ ++ L + T IAHR+++V ++D +L+ G
Sbjct: 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNG------- 545
Query: 334 PTRLLENKSSSFAQLVA 350
R++E S SF +LVA
Sbjct: 546 --RVVE--SGSFDELVA 558
|
Length = 588 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-39
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 2/215 (0%)
Query: 110 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169
++ G+ V Y P LR ++ T G + +VG +G+GKSTL+ L V+P
Sbjct: 316 AAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP 374
Query: 170 TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-DEEIWEALDK 228
T G IA++G+ ++ R +++ +PQ P +F G++ N+ A D EI EAL++
Sbjct: 375 TEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALER 434
Query: 229 CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288
L V L++ + E G S GQ Q + LAR L+ + +L+LDE TA +D T+
Sbjct: 435 AGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494
Query: 289 NLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323
+ L TV+ + HR+ +D +++L
Sbjct: 495 AEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 8/225 (3%)
Query: 111 PSQGEVDIHGLQVRYAPHLP--LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168
P +GE++ + Y P P L GL T G +VG +G+GKSTL Q L R +
Sbjct: 333 PLRGEIEFEQVNFAY-PARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391
Query: 169 PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYADEEIWEA 225
P +G I +DG+D+ + +LR+R++++PQDP +F SV N+ P + DEE+ A
Sbjct: 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAA 449
Query: 226 LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285
+ ++ + E G S GQRQ + +AR +LK + +L+LDEAT+++D
Sbjct: 450 ARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDA 509
Query: 286 ATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEE 330
++ L+Q L T + IAHR+ +V+ +D ++++ G I
Sbjct: 510 ESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 4e-38
Identities = 77/267 (28%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 70 LISKLCNLENRIISVERILQYMCIPNEPPLVIE---ASRPNCSWPSQGEVDIHGLQVRYA 126
L LE + ++ +L+ P +P L E A+ S G V++ + Y+
Sbjct: 432 FGGTLQELEGDLNRLDDVLRN---PVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYS 488
Query: 127 PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL 186
P P ++ + T G + +VG +GSGKST+ + + + +P +G I DGI I
Sbjct: 489 PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPR 548
Query: 187 HDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYADEEIWEALDKCQLGNEVRKNEGKLE 243
L + ++++ QD +FEG+V +NL DP D ++ A + + + G +
Sbjct: 549 EVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCT 303
+ + E G N S GQRQ + +AR L++ +L+LDEAT+++D T+ +I L + CT
Sbjct: 607 AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR--GCT 664
Query: 304 VITIAHRITSVIDSDMVLLLSYGLIEE 330
I +AHR++++ D D +++L G + +
Sbjct: 665 CIIVAHRLSTIRDCDEIIVLERGKVVQ 691
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 9e-38
Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Query: 81 IISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDI--HGLQVRYAPHLPLVLRGLTC 138
+ ERI++ + + V E S P G+ + L Y P P VL G++
Sbjct: 301 RAAAERIVE---VLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSL 356
Query: 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQ 198
G + I+G +GSGKSTL+ TL +++P G + +DG+ +SS+ ++R R+S+ Q
Sbjct: 357 DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Query: 199 DPTMFEGSVHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257
D +F+ +V NL + DEE+W AL++ L + +R L++ + E G S G+
Sbjct: 417 DAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310
RQ + LAR LL + +L+LDE T +D T + + L S TV+ I H
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 8e-37
Identities = 68/236 (28%), Positives = 124/236 (52%), Gaps = 2/236 (0%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ ++ RY P P++L ++ G GIVGR+GSGKSTL + + R P G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYAD-EEIWEALDKCQLGNE 234
+DG D++ LR ++ ++ Q+ +F S+ +N+ + E + EA +
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 235 VRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 294
+ + ++ V E G S GQRQ + +AR L+ ++L+ DEAT+++D +++ I
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 295 LGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350
+ + TVI IAHR+++V ++D ++++ G I E S LL ++ +A L
Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 6e-35
Identities = 76/220 (34%), Positives = 128/220 (58%), Gaps = 4/220 (1%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L ++ T KT IVG +GSGKSTL + L + +G I ++G + I H LR
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 192 RLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
++ +PQ+P +F GS+ NL E + +EIW A + ++ +++ ++ ++E
Sbjct: 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
G + S GQ+Q + LAR LL SKVL+LDE+T+++DT T+ I + L + D T+I +AH
Sbjct: 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LNLQDKTIIFVAH 667
Query: 310 RITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
R++ SD +++L +G I E S LL +++ +A L+
Sbjct: 668 RLSVAKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 2e-34
Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 4/219 (1%)
Query: 113 QGEVDIHGLQVRYAPHLP--LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170
+G V + Y P P LVL+ ++ T G T +VG +GSGKST++ L +P
Sbjct: 9 KGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 171 AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD-PLEEYADEEIWEALDKC 229
G + +DG IS L S++S++ Q+P +F S+ +N+ L+ + E + EA K
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289
+ + + ++ V E G S GQ+Q V +AR L++ +VL+LDEAT+++D ++
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 328
+Q L TV+ IAHR+++V +D +L+L G I
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 9e-34
Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%)
Query: 127 PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL 186
P +P VL+GLT T G +VG +GSGKST+ L + +PT G + +DG+ +
Sbjct: 492 PDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH 550
Query: 187 HDLRSRLSIIPQDPTMFEGSVHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESR 245
H L +++++ Q+P +F GSV N+ L + DEEI A + + + ++
Sbjct: 551 HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610
Query: 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ--HFSDCT 303
V E G S GQ+Q + +AR L++K +VL+LDEAT+++D + L + + T
Sbjct: 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQESRSRASRT 666
Query: 304 VITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
V+ IAHR+++V +D +L+L G + E + +L+E++ + LV
Sbjct: 667 VLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 5e-33
Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 3/238 (1%)
Query: 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
G +++ + RY P PL+L ++ G IVG +GSGKSTL++ L P +G
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLG 232
+ DG D++ + + +R +L ++ Q+ + GS+ N+ +E WEA L
Sbjct: 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLA 568
Query: 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292
++R + + ++E G S GQRQ + +AR L++K ++L+ DEAT+++D T ++
Sbjct: 569 EDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
Query: 293 HTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350
+L + T I IAHR++++ ++D + +L G + + + L+ + FAQL
Sbjct: 629 ESLER--LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 6e-33
Identities = 85/279 (30%), Positives = 138/279 (49%), Gaps = 15/279 (5%)
Query: 82 ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFL 141
I++ER+ + P EP A+ P +G + ++ RYAP P VL L
Sbjct: 426 IALERLGDILNSPTEPRSAGLAALPEL----RGAITFENIRFRYAPDSPEVLSNLNLDIK 481
Query: 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201
G GIVG +GSGKSTL + L R+ P G + +DG+D++ LR ++ ++ Q+
Sbjct: 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541
Query: 202 MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNE----VRKNEGKLESRVTENGENWSMGQ 257
+F S+ +N+ A E + +L +G + V E G N S GQ
Sbjct: 542 LFSRSIRDNIALCNPGAPFE--HVIHAAKLAGAHDFISELPQG-YNTEVGEKGANLSGGQ 598
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS 317
RQ + +AR L+ ++L+ DEAT+++D ++ LI + + TVI IAHR+++V
Sbjct: 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC 658
Query: 318 DMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRS 356
D +++L G I E LL +A+L + Q+S
Sbjct: 659 DRIIVLEKGQIAESGRHEELLA-LQGLYARL---WQQQS 693
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 6e-33
Identities = 79/237 (33%), Positives = 128/237 (54%), Gaps = 3/237 (1%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
G V+ + +A V ++ G IVG TG+GK+TLI L R+ +PT G
Sbjct: 333 GAVEFRHITFEFANSSQGV-FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-DEEIWEALDKCQLG 232
I IDGIDI+++ LR ++ + QD +F S+ N+ E A DEE++EA
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292
+ + K ++ V E G S G+RQ + +AR +LK + +LVLDEAT+++D T+ ++
Sbjct: 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511
Query: 293 HTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
+ + + T IAHR+++V ++D+VL L G + E S L+ K F +L+
Sbjct: 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI-QKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 75/240 (31%), Positives = 131/240 (54%), Gaps = 3/240 (1%)
Query: 111 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170
++G+++ + Y LR + G +VGR+GSGKST+ L R +
Sbjct: 337 RAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID 396
Query: 171 AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEALDK 228
G I +DG D+ L LR++++++ Q+ +F ++ NN+ E+Y+ E+I EA
Sbjct: 397 EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARM 456
Query: 229 CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288
+ + K + L++ + ENG S GQRQ + +AR LL+ S +L+LDEAT+++DT ++
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 289 NLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348
IQ L + + T + IAHR++++ +D +L++ G I E + LL +AQL
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQL 575
|
Length = 582 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 6e-31
Identities = 76/262 (29%), Positives = 128/262 (48%), Gaps = 6/262 (2%)
Query: 81 IISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTF 140
I S RI + I + P V + + Q + ++ + Y VL+GL+
Sbjct: 308 IASARRINE---ITEQKPEVTFPTTSTAA-ADQVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200
G K ++GRTG GKSTL+Q L R +P G I ++G I+ LR +S++ Q
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423
Query: 201 TMFEGSVHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259
+F ++ +NL +DE + E L + L + ++G L + + E G S G+++
Sbjct: 424 HLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKG-LNAWLGEGGRQLSGGEQR 482
Query: 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDM 319
+ +AR LL + +L+LDE T +D T+ I L +H + TV+ I HR+T + D
Sbjct: 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDR 542
Query: 320 VLLLSYGLIEEFDSPTRLLENK 341
+ ++ G I E + LL +
Sbjct: 543 ICVMDNGQIIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 55/215 (25%), Positives = 109/215 (50%), Gaps = 13/215 (6%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202
G + +VG +G+GK++L+ L + P G + I+GI++ + R LS + Q+P +
Sbjct: 376 GQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL 434
Query: 203 FEGSVHNNL---DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259
G++ +N+ +P + +DE++ +AL+ + + L++ + + S+GQ Q
Sbjct: 435 PHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492
Query: 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDM 319
+ LAR LL+ ++L+LDE TAS+D ++ L+ L T + + H++ + D
Sbjct: 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQ 552
Query: 320 VLLLSYGLIEE---FDSPTRLLENKSSSFAQLVAE 351
+ ++ G I + + L FA L+A
Sbjct: 553 IWVMQDGQIVQQGDYAE----LSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-29
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 42/208 (20%)
Query: 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI 179
+ RY P VLR ++ + G I+G +GSGKSTL + + ++ PT+G + +DG
Sbjct: 5 NVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA 64
Query: 180 DISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNE 239
DIS ++L + +PQD +F GS+ N+
Sbjct: 65 DISQWDPNELGDHVGYLPQDDELFSGSIAENI---------------------------- 96
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ-H 298
S GQRQ + LAR L ++LVLDE + +D + + +
Sbjct: 97 -------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143
Query: 299 FSDCTVITIAHRITSVIDSDMVLLLSYG 326
+ T I IAHR ++ +D +L+L G
Sbjct: 144 AAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-27
Identities = 61/258 (23%), Positives = 113/258 (43%), Gaps = 24/258 (9%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ L +Y L G++ G G++G G+GK+TL++ L +++PT+G I
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLD-------PLEEYADEEIWEALD 227
+ G D+ +R R+ +PQ+P+++ +V NL+ +E A+E I E L+
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
L ++ K L S G +Q + +A LL ++L+LDE T+ +D +
Sbjct: 123 LFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 288 DNLIQHTLGQHFSD--CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSS 344
I L + + T++ H + + D V++L+ G I +P L E
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 345 FAQLVAEYTQRSNSSFEK 362
+ E
Sbjct: 232 GVIELEPERLELAELLEG 249
|
Length = 293 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 15/241 (6%)
Query: 95 NEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGS 154
E P+V + S P + +V+I Q Y L + T G GI G TGS
Sbjct: 295 AEAPVVKDGSEPVPEGRGELDVNIR--QFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352
Query: 155 GKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL--- 211
GKSTL+ + R + + G I I ++ + L RSRL+++ Q P +F +V NN+
Sbjct: 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412
Query: 212 DPLEEYADEEIWEALDKCQLGNE----VRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267
P + +EI +L + +R +G ++ V E G S GQ+Q + +AR L
Sbjct: 413 RP--DATQQEIEHV---ARLASVHDDILRLPQG-YDTEVGERGVMLSGGQKQRISIARAL 466
Query: 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327
L +++L+LD+A ++VD T++ I H L Q TVI AHR++++ ++ +L++ +G
Sbjct: 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGH 526
Query: 328 I 328
I
Sbjct: 527 I 527
|
Length = 569 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-27
Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 41/245 (16%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PT 170
+++ L V Y L+ ++ G T ++G +G GKSTL++ L R+ + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 171 AGLIAIDGIDISSIGLHD--LRSRLSIIPQDPTMFEGSVHNNLD--------PLEEYADE 220
G + +DG DI + + LR R+ ++ Q P F GS+++N+ L+E DE
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 221 EIWEALDKCQLGNEV--RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278
+ EAL K L +EV R + L S GQ+Q +CLAR L + +VL+LDE
Sbjct: 119 RVEEALRKAALWDEVKDRLHALGL-----------SGGQQQRLCLARALANEPEVLLLDE 167
Query: 279 ATASVDTATDNLIQHTLGQHFSDCTVITIAH------RITSVIDSDMVLLLSYGLIEEFD 332
T+++D + I+ + + + T++ + H R+ +D L G + EF
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFG 222
Query: 333 SPTRL 337
++
Sbjct: 223 PTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-26
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 39/213 (18%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
I+ + Y VL+ L+ G K ++GR+GSGKSTL+Q L ++P G I +D
Sbjct: 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD 62
Query: 178 GIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK 237
G+ +S + L S +S++ Q P +F+ ++ NNL
Sbjct: 63 GVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL-------------------------- 95
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
G +S G+RQ + LAR+LL+ + +++LDE T +D T+ + + +
Sbjct: 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
Query: 298 HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEE 330
D T+I I H +T + D +L L G I
Sbjct: 144 VLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-26
Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 58/211 (27%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
I L RY L ++ T G +VG GSGKSTL++ + +++PT+G I ID
Sbjct: 2 IENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 178 GIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK 237
G DI+ + L +LR R+ +P QL
Sbjct: 60 GKDIAKLPLEELRRRIGYVP--------------------------------QL------ 81
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
S GQRQ V LAR LL +L+LDE T+ +D A+ + L +
Sbjct: 82 ----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 298 HFSD-CTVITIAHRITSVID-SDMVLLLSYG 326
+ TVI + H +D V++L G
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 2/221 (0%)
Query: 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
+G + + + + LRG++ + G I+G +GSGKSTL + + I PT+G
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYAD-EEIWEALDKCQL 231
+ +DG D+ + +PQD +F G+V N+ E AD E+I EA +
Sbjct: 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGV 433
Query: 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
+ + ++ + G S GQRQ + LAR L K++VLDE +++D + +
Sbjct: 434 HELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL 493
Query: 292 QHTLGQ-HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEF 331
+ + TV+ I HR + + D +L+L G I F
Sbjct: 494 ANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-25
Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 39/264 (14%)
Query: 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171
+++ L V Y VL ++ + G T ++G G+GKSTL++ + +++P++
Sbjct: 1 MMPMIEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58
Query: 172 GLIAIDGIDISSIGLHDLRSRLSIIPQ----DPT----------MFEGSVHNNLDPLEEY 217
G I I G + R R+ +PQ D + + L +
Sbjct: 59 GEIKIFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK 115
Query: 218 ADEEIWEALDKCQLGNEVRKNE-GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276
E++ EAL++ + ++R + G+L S GQ+Q V LAR L + +L+L
Sbjct: 116 DKEKVDEALERVGME-DLRDRQIGEL-----------SGGQKQRVLLARALAQNPDLLLL 163
Query: 277 DEATASVDTATDNLIQHTLGQHFSD-CTVITIAHRITSVID-SDMVLLL-----SYGLIE 329
DE VD A I L + + TV+ + H + V+ D V+ L + G E
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPE 223
Query: 330 EFDSPTRLLENKSSSFAQLVAEYT 353
E + L + S A +A Y
Sbjct: 224 EVLTEENLEKAFGGSLAHALAGYR 247
|
Length = 254 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-24
Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 29/237 (12%)
Query: 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
L RY L+ ++ G + ++G GSGKSTL++ L +++PT+G + +DG+D
Sbjct: 9 LSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLD 67
Query: 181 ISSI-GLHDLRSRLSIIPQDPTM--FEGSVHNNLD--------PLEEYADEEIWEALDKC 229
SS L +LR ++ ++ Q+P F +V + + P EE +E + EAL+
Sbjct: 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREE-IEERVAEALELV 126
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT-ATD 288
L + + L S GQ+Q V +A VL ++L+LDE TA +D
Sbjct: 127 GLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 289 NLIQ--HTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342
L++ L + T+I + H + V++ +D V++L G I P + +
Sbjct: 176 ELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 9e-24
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 27/208 (12%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ L Y +L L+ + G TGI+G GSGKSTL++ L +++P +G +
Sbjct: 3 LEVENLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHN----------NLDPLEEYADEEI-W 223
+DG DI+S+ +L +L+ +PQ P+ G +V+ L DEEI
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283
EAL+ LG E + E S G+RQ V +AR L +++ +L+LDE T+ +
Sbjct: 121 EALE--LLGLEHLADRPVDEL---------SGGERQRVLIARALAQETPILLLDEPTSHL 169
Query: 284 DTATDNLIQHTLGQ--HFSDCTVITIAH 309
D A + L TV+ + H
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTVVMVLH 197
|
Length = 258 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 1e-23
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ + L RY L G++ T GM G++G G+GK+TL++ L + P++G I
Sbjct: 1 LQLENLTKRY-GKK-RALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPL-------EEYADEEIWEALD 227
IDG D+ LR R+ +PQ+ ++ +V LD + + + E L+
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
LG+ +K G L S G R+ V +A+ L+ +L++DE TA +D
Sbjct: 117 LVNLGDRAKKKIGSL-----------SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 288 DNLIQHTLGQHFSDCTVITIAHRITSVIDS--DMVLLLSYG 326
++ L + D VI H I ++S + V +L+ G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTH-IVEDVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 1e-23
Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 20/240 (8%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
+I +V Y+ +L+ ++ F GG IVG +G+GKSTLI+ + R+++PT G I I
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 177 DGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD--PL---EEYADEEIWEALDKCQL 231
DG+DI +I + DLR ++ ++ Q P +FEG+V +N++ P+ E+ D E + L L
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY--LSIVGL 120
Query: 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
E T + +N S G+ Q V +AR L +VL+LDE T+++D + +I
Sbjct: 121 NKEYA----------TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 292 QHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348
+ + ++ + TVI I H + D L+ G++ E+ N + +L
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 2e-23
Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
+ L Y L ++ T G IVG GSGKSTL++ L ++ PT+G + +D
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 178 GIDISSIGLHDLRSRLSIIPQDP-------TMFE----GSVHNNLDPLEEYADEEIWEAL 226
G D++ + L +LR ++ ++ Q+P T+ E G + L E +E + EAL
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEE--IEERVEEAL 119
Query: 227 DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
+ L L R S GQ+Q V +A VL +L+LDE TA +D A
Sbjct: 120 ELVGLEG--------LRDRSP---FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 287 TDNLIQHTLGQ-HFSDCTVITIAHRITSVID-SDMVLLLSYG 326
+ L + T+I + H + +++ +D V++L G
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 2e-23
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 36/228 (15%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
+ L V Y H VL ++ G IVG G+GKSTL++ + +++PT+G I +
Sbjct: 2 VEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 178 GIDISSIGLHDLRSRLSIIPQ----DPTMFEGSV----------HNNLDPLEEYAD-EEI 222
G + R R+ +PQ D F SV H L AD ++
Sbjct: 60 GKPLE-----KERKRIGYVPQRRSIDRD-FPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282
EAL++ L + G+L S GQ+Q V LAR L++ +L+LDE A
Sbjct: 114 DEALERVGLSELADRQIGEL-----------SGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 283 VDTATDNLIQHTLGQ-HFSDCTVITIAHRITSVIDS-DMVLLLSYGLI 328
VD T I L + T++ + H + V++ D VLLL+ ++
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 3e-23
Identities = 67/198 (33%), Positives = 114/198 (57%), Gaps = 23/198 (11%)
Query: 153 GSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 212
GSG+ + T+F+ +G I +DG+DI L DLR+ SI+ Q+P +F S++ N+
Sbjct: 1265 GSGEDS---TVFK----NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK 1317
Query: 213 PLEEYAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271
+E A E++ A + + K ++ V G++ S GQ+Q + +AR LL++
Sbjct: 1318 FGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377
Query: 272 KVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVITIAHRITSVIDSDMVLLLSYGLIE 329
K+L+LDEAT+S+D+ ++ LI+ T+ + +D T+ITIAHRI S+ SD +++
Sbjct: 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV------- 1430
Query: 330 EFDSPTRLLENKSSSFAQ 347
F++P R + SF Q
Sbjct: 1431 -FNNPDR-----TGSFVQ 1442
|
Length = 1466 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 8/232 (3%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L+G++ G GI+G +GSGKSTL + L I PT+G + +DG D+ L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 192 RLSIIPQDPTMFEGSVHNNLDPLEEYAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
+ +PQD +F+G++ N+ E AD E++ EA + + + ++R+ E G
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT----ATDNLIQHTLGQHFSDCTVIT 306
S GQRQ + LAR L ++VLDE +++D+ A I + TV+
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR---GGTVVV 527
Query: 307 IAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNS 358
IAHR +++ D +L+L G I F +L + T +
Sbjct: 528 IAHRPSALASVDKILVLQDGRIAAFGPREEVLAKVLRPPPRQAKPGTVVAPG 579
|
Length = 580 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 9e-23
Identities = 41/196 (20%), Positives = 90/196 (45%), Gaps = 15/196 (7%)
Query: 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189
L+ + G IVG GSGKS+L+ L +E +G +++ G
Sbjct: 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----------- 66
Query: 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
++ + Q+P + G++ N+ + + +E + + C L ++ + + E
Sbjct: 67 --SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEK 124
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT-DNLIQHTLGQHFSDC-TVITI 307
G N S GQ+Q + LAR + + + +LD+ ++VD ++ ++ + + T I +
Sbjct: 125 GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV 184
Query: 308 AHRITSVIDSDMVLLL 323
H++ + +D +++L
Sbjct: 185 THQLQLLPHADQIVVL 200
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 5e-22
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 39/168 (23%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
++ L V Y VL L+ + G GI+G G+GKSTL++TL +++P++G I +
Sbjct: 1 EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 177 DGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVR 236
DG D++S+ +L +++ +PQ AL+ L +
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHLAD 92
Query: 237 KNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ +L S G+RQ V LAR L ++ +L+LDE T+ +D
Sbjct: 93 RPFNEL-----------SGGERQRVLLARALAQEPPILLLDEPTSHLD 129
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 7e-22
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 157 STLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSRLSIIPQDPT-MFEGSVHNNLDP- 213
STL++ + +++PT+G I +DG D + + LR R+ ++ QDP E +V NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 214 -LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272
++ AD EAL++ L + + + V S GQ+Q V +AR LLKK K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR------EPVGT----LSGGQKQRVAIARALLKKPK 110
Query: 273 VLVLDEATA 281
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 9e-21
Identities = 81/332 (24%), Positives = 146/332 (43%), Gaps = 65/332 (19%)
Query: 55 LAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQG 114
+++ G+ ++M ++I L N+ + S+E I N PLV E +
Sbjct: 325 ISILLGVLISMFMLTII--LPNITEYMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIK 381
Query: 115 EVDIHGLQVRYAPHLPL-VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
++ ++ Y + + + L T G VG +G GKST+++ + R+ +PT G
Sbjct: 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGD 441
Query: 174 IAI-DGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN----------LDPLEEYADEEI 222
I I D ++ I L RS++ ++ QDP +F S+ NN L+ L Y +E+
Sbjct: 442 IIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDG 501
Query: 223 WEALDKCQLGN-----------------------EVRKN--------------------- 238
++ + N E+RKN
Sbjct: 502 NDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDF 561
Query: 239 ----EGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 294
K E+ V N S GQ+Q + +AR +++ K+L+LDEAT+S+D ++ L+Q T
Sbjct: 562 VSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621
Query: 295 LGQHFSDCTVIT--IAHRITSVIDSDMVLLLS 324
+ + IT IAHR++++ ++ + +LS
Sbjct: 622 INNLKGNENRITIIIAHRLSTIRYANTIFVLS 653
|
Length = 1466 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 5e-20
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 35/199 (17%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
+ L Y P+ L+ ++ + G ++G +G+GKSTL++ L +VEPT+G + ID
Sbjct: 3 VENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 178 GIDISSIG---LHDLRSRLSIIPQDPTMFE-------------GSVHN-----NLDPLEE 216
G DI+ + L LR ++ +I Q + E G L P EE
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE 121
Query: 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276
+ AL++ L K R + S GQ+Q V +AR L+++ K+++
Sbjct: 122 K--QRALAALERVGL-------LDKAYQRADQ----LSGGQQQRVAIARALMQQPKLILA 168
Query: 277 DEATASVDTATDNLIQHTL 295
DE AS+D A+ + L
Sbjct: 169 DEPVASLDPASSRQVMDLL 187
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-19
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 28/235 (11%)
Query: 116 VDIHGLQVRYAPHLPLV--LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
+++ L V + V L ++ + G G+VG +GSGKSTL + + +++PT+G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 174 IAIDGIDISSIGLHDL---RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEAL-DKC 229
I DG D+ + R + ++ QDP ++L+P E+I E L
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP-------MSSLNPRMTIG-EQIAEPLRIHG 113
Query: 230 QLGNEVRKNEGKLESRVT-ENGENW--------SMGQRQLVCLARVLLKKSKVLVLDEAT 280
+L + + E L V E S GQRQ V +AR L K+L+ DE T
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 281 ASVDTATDNLIQHTLG--QHFSDCTVITIAHRITSVID--SDMVLLLSYGLIEEF 331
+++D + I L Q T++ I H + V+ +D V ++ G I E
Sbjct: 174 SALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-19
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 53/264 (20%)
Query: 116 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
+ + L + Y L ++ G GIVG +GSGKSTL + L + +P++G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 174 IAIDGIDISSIGLHDLRSR-LSIIPQDPTMFEGSVHNNL-------DPL----EEYADEE 221
I +DG ++ R + ++ QDP S++ +PL + +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDP---YSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 222 IWEALDKCQLGNEVRK---NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278
I E LD+ L +E S GQRQ + +AR L+ + K+L+LDE
Sbjct: 121 IAELLDQVGLPPSFLDRRPHE-------------LSGGQRQRIAIARALIPEPKLLILDE 167
Query: 279 ATASVDTATD----NLIQHTLGQHFSDCTVITIAHRITSVID--SDMVLLLSYGLIEE-- 330
T+++D + NL+ L + T + I+H + ++++ D + ++ G I E
Sbjct: 168 PTSALDVSVQAQILNLLLE-LKKER-GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIG 224
Query: 331 -----FDSP----TRLLENKSSSF 345
P TR L S
Sbjct: 225 PTEELLSHPSHPYTRELLEAVPSI 248
|
Length = 252 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 83.2 bits (207), Expect = 4e-19
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 46/216 (21%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ L RY L ++ T G G++G G+GK+TLI+ + +++P +G I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNE 234
+ G DI +++ R+ +P++P+++E +V NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 235 VRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 294
S G +Q + LA+ LL ++L+LDE T+ +D +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 295 LGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLI 328
L + T++ +H + D V +L+ G I
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 8e-19
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI---SSIGL 186
L ++ G GI+G +G+GKSTL++ + + PT+G + +DG D+ S L
Sbjct: 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL 78
Query: 187 HDLRSRLSIIPQDPTMFEG-SVHNNLD-PLE--EYADEEI----WEALDKCQLGNEVRKN 238
LR ++ +I Q + +V N+ PLE EI E L+ L ++ +
Sbjct: 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY 138
Query: 239 EGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN-------LI 291
+L S GQ+Q V +AR L K+L+ DEAT+++D T I
Sbjct: 139 PAQL-----------SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187
Query: 292 QHTLGQHFSDCTVITIAHRITSVIDS--DMVLLLSYGLIEE 330
LG T++ I H + V+ D V +L G + E
Sbjct: 188 NRELG-----LTIVLITHEM-EVVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 9e-19
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 26/243 (10%)
Query: 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171
+ + + Y L+ ++ G I+G GSGKST+ + L +++P +
Sbjct: 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS 63
Query: 172 GLIAIDGIDISSIGLHDLRSRLSIIPQDP-TMFEGSV----------HNNLDPLEEYADE 220
G I IDGI IS L ++R ++ II Q+P F G+ + + P + +
Sbjct: 64 GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKK--MKD 121
Query: 221 EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280
I + K + + + K E +N S GQ+Q V +A VL ++++ DE+T
Sbjct: 122 IIDDLAKKVGMEDYLDK-----EP------QNLSGGQKQRVAIASVLALNPEIIIFDEST 170
Query: 281 ASVDTATDNLIQHTLG--QHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 338
+ +D I+ + + T+I+I H + I +D V++ S G + P +L
Sbjct: 171 SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
Query: 339 ENK 341
NK
Sbjct: 231 NNK 233
|
Length = 271 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 27/172 (15%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSV 207
I G +G+GK++L++ L AGL IS S L +PQ P + +G++
Sbjct: 424 ITGESGAGKTSLLRAL-------AGLWPWGSGRISMPA----DSALLFLPQRPYLPQGTL 472
Query: 208 HNNL---DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM----GQRQL 260
L + +++D E+ L K LG L R+ E W G++Q
Sbjct: 473 REALCYPNAAPDFSDAELVAVLHKVGLG--------DLAERLDEED-RWDRVLSGGEQQR 523
Query: 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312
+ AR+LL K K + LDEAT+++D T++ + L + D TVI++ HR T
Sbjct: 524 LAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT 575
|
Length = 604 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 1e-18
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 25/226 (11%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--I 184
L+ + T ++G +G GKSTL+++L R+ + G + DG DI I
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 185 GLHDLRSRLSIIPQDPTMFEGSVHNN---------LDPLEEYADEEIWEALDKCQLGNEV 235
+ +LR R+ ++ Q P F S+++N + +E DE + E+L K L +EV
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKE-LDEIVEESLKKAALWDEV 134
Query: 236 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295
+ R+ ++ S GQ+Q +C+AR L + +VL+LDE T+++D I+ +
Sbjct: 135 K-------DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 296 GQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
+ T++ + H + SD G + E+ ++ N
Sbjct: 188 QELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-18
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 44/216 (20%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ + RY VL ++ G ++G +GSGKSTL++ + + EP +G I
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 176 IDGIDISSIGLH--DLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN 233
IDG D++ + LR R+ ++ QD +F +L L+ LG
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALF-----PHLT------------VLENIALG- 100
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
S GQ+Q V LAR L VL+LDE T+++D T ++
Sbjct: 101 -------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA 141
Query: 294 TLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 326
L TV+ + H + +D V++L G
Sbjct: 142 LLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 3e-18
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 32/229 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDI--SSI 184
L+ + T ++G +G GKSTL++ L R+ + G + +DG +I +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 185 GLHDLRSRLSIIPQDPTMFEGSVHNNLD---PLEEYADEEIWE----ALDKCQLGNEVRK 237
+ +LR R+ ++ Q P F S+++N+ L D+E+ E +L K L +EV+
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK- 140
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
R+ ++ S GQ+Q +C+AR L K +VL++DE T+++D + I+ + +
Sbjct: 141 ------DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194
Query: 298 HFSDCTVITIAH------RITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340
T++ + H R+ SD G + EF ++ N
Sbjct: 195 LKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 4e-18
Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 36/245 (14%)
Query: 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---- 168
+++I L+V + VL G+ T ++G +GSGKSTL++ R++E
Sbjct: 1 MNKIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE 58
Query: 169 -PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP------TMFE----GSVHNNLDPLEEY 217
+G + +DG DI + + +LR R+ ++ Q P ++FE G N L ++
Sbjct: 59 ARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKE 118
Query: 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277
E + AL+K QL +EV+ R+ S GQ+Q +C+AR L + +VL+ D
Sbjct: 119 LQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171
Query: 278 EATASVDTATDNLIQHTLGQHFSDCTVITIAH------RITSVIDSDMVLLLSYGLIEEF 331
E TA++D I+ + D T++ + H RI SD V L G I E
Sbjct: 172 EPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARI-----SDYVAFLYKGQIVE- 225
Query: 332 DSPTR 336
PTR
Sbjct: 226 WGPTR 230
|
Length = 250 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-18
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 34/185 (18%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++I L + VL+G+ T G I+G +GSGKSTL++ + + EP +G I
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 176 IDGIDI--SSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--------------EYAD 219
IDG+ + +++LR ++ ++ Q +F +L LE A+
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP-----HLTVLENITLAPIKVKGMSKAEAE 113
Query: 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279
E E L+K L ++ +L S GQ+Q V +AR L KV++ DE
Sbjct: 114 ERALELLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 280 TASVD 284
T+++D
Sbjct: 163 TSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 6e-18
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTAGL-----IAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T I+G +G GK+TL++++ R+ + G I G DI + + + R ++ ++ Q
Sbjct: 32 TAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQ 91
Query: 199 DPTMFEGSVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
PT F S+++N+ + D + E+L K L +EV+ S + + G
Sbjct: 92 KPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPG 144
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310
S GQ+Q +C+AR L + +V++LDE T+++D I+ L + + T++ + H
Sbjct: 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
Query: 311 ITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352
I I +D + + G + E+ ++E + +L EY
Sbjct: 205 IGQAIRIADYIAFMYRGELIEYGPTREIVERPKN---KLTEEY 244
|
Length = 250 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 7e-18
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 20/149 (13%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSRLSIIPQDP--TM 202
G++G TGSGKSTLIQ L +++PT+G I IDG+DI+ + L D+R ++ ++ Q P +
Sbjct: 37 GLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96
Query: 203 FEGSVHN-------NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255
FE ++ NL EE + + A++ L E K++ E S
Sbjct: 97 FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFE---------LSG 147
Query: 256 GQRQLVCLARVLLKKSKVLVLDEATASVD 284
GQ++ V +A V+ + K+L+LDE TA +D
Sbjct: 148 GQKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
Length = 287 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 55/255 (21%)
Query: 128 HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID--ISSIG 185
+ ++ G G+VG +GSGKSTL + L ++ P++G I DG D ++
Sbjct: 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGE 361
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDP---LEEYADEEIWEALDKCQLGNEVRKNEGKL 242
L LR R+ ++ QDP S L+P + + E L + +
Sbjct: 362 LRRLRRRIQMVFQDP---YSS----LNPRMTVGDILAEP---------LRIHGGGSGAER 405
Query: 243 ESRVTEN------GENW--------SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288
+RV E + S GQRQ V +AR L + K+L+LDE +++D +
Sbjct: 406 RARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQ 465
Query: 289 ----NLI---QHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
NL+ Q LG T + I+H + V +D V ++ G I E ++ EN
Sbjct: 466 AQVLNLLKDLQEELG-----LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
Query: 341 KSSSFAQLVAEYTQR 355
YT++
Sbjct: 521 PQH-------PYTRK 528
|
Length = 539 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-17
Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 30/220 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI---SSIGLHD 188
VL+G+ G I+G +GSGKSTL++ + ++ P +G + IDG DI S L+
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74
Query: 189 LRSRLSIIPQDPTMFEG-SVHNNLD-PLEEY---ADEEIWE-ALDKCQ---LGNEVRKNE 239
LR R+ ++ Q +F+ +V N+ PL E+ ++EEI E L+K + L
Sbjct: 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP 134
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD----TATDNLIQHTL 295
+L S G ++ V LAR L ++L+ DE TA +D D+LI +L
Sbjct: 135 AEL-----------SGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI-RSL 182
Query: 296 GQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334
+ T I + H + + +D + +L G I +P
Sbjct: 183 KKEL-GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTP 221
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 2e-17
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 20/208 (9%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202
T ++G +G GKST ++ R+ + A GL+ I+G D+ + + LR + ++ Q P +
Sbjct: 31 TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNV 90
Query: 203 FEGSVHNN------LDPLEEYADEE---IWEALDKCQLGNEVRKNEGKLESRVTENGENW 253
F S++ N L + + DEE + + L K L EV+ ++ +N
Sbjct: 91 FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALAL 143
Query: 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313
S GQ+Q +C+AR L K K+L+LDE T+++D + +I+ L + + ++I + H +
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203
Query: 314 VID-SDMVLLLSYGLIEEFDSPTRLLEN 340
+D G + EF EN
Sbjct: 204 GKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 2e-17
Identities = 58/213 (27%), Positives = 111/213 (52%), Gaps = 23/213 (10%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE--PTA---GLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T ++G +G GKST ++++ R+ + P+A G I +G++I S+I + +LR + ++ Q
Sbjct: 50 TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ 109
Query: 199 DPTMFEGSVHNNLDPLEEYA--------DEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
P F S++NN+ +YA DE + E+L K L +EV+ R+ +
Sbjct: 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSA 162
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310
+ S GQ+Q +C+AR L K VL+LDE +++D ++ I+ + + + ++I + H
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
Query: 311 ITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342
+ + SD G + E+D ++ +
Sbjct: 223 MQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPK 255
|
Length = 268 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 4e-17
Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 24/214 (11%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDI--SSIG 185
L G++ F T ++G +G GKST ++ L R+ + G I +G +I S +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRK 237
L +LR + ++ Q PT F SV++N+ +E D+ + E+L + + E +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
N + N + +S GQ+Q +C+AR L + KV++LDE T+++D + + I+ TL +
Sbjct: 140 N-------LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 298 HFSDCTVITIAHRI--TSVIDSDMVLLLSYGLIE 329
T I + H + I L++ LIE
Sbjct: 193 LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226
|
Length = 251 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 9e-17
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 28/215 (13%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-T 201
G T IVG GSGKST+ + + I + +G I + I+ LR + I+ Q+P
Sbjct: 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDN 94
Query: 202 MFEGSV---------HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252
F GS+ N+ P +E + EAL + + R
Sbjct: 95 QFVGSIVKYDVAFGLENHAVPYDEMH-RRVSEALKQVDMLE-----------RADYEPNA 142
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD----NLIQHTLGQHFSDCTVITIA 308
S GQ+Q V +A VL V++LDEAT+ +D +L++ +H + T+I+I
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH--NITIISIT 200
Query: 309 HRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSS 343
H ++ +++D V++++ G + + +PT + ++
Sbjct: 201 HDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-16
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 30/189 (15%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ I L Y + L+ G G++G G+GK+T ++ L + PT+G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-------------EYADEEI 222
I+G I + R L PQ +F+ L E EE+
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFD-----ELTVREHLRFYARLKGLPKSEIKEEV 114
Query: 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282
L L K R S G ++ + LA L+ VL+LDE T+
Sbjct: 115 ELLLRVLGL-------TDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163
Query: 283 VDTATDNLI 291
+D A+ I
Sbjct: 164 LDPASRRAI 172
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-16
Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 36/239 (15%)
Query: 125 YAPHLPLVLRGLT---CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181
Y+P P+ +GL G +VG TGSGKSTL+Q +++P++G I I G I
Sbjct: 12 YSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71
Query: 182 ----SSIGLHDLRSRLSIIPQDP--TMFEGSVHN-------NLDPLEEYADEEIWEALDK 228
+ L LR ++S++ Q P +FE +V N E+ A E+ + L K
Sbjct: 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKK 131
Query: 229 CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288
L ++ ++ E S GQ + V +A V+ + ++L LDE A +D
Sbjct: 132 VGLSEDL-ISKSPFE---------LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG- 180
Query: 289 NLIQHTLGQHFSDC-----TVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341
+ + Q F D TVI + H + V + +D VL+L +G + + SP + +K
Sbjct: 181 ---RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
Length = 287 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-16
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 25/242 (10%)
Query: 127 PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL 186
+ L G ++G +GSGK+T ++ + R++EPT+G I IDG DI
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 187 HDLRSRLSIIPQDPTMF-EGSVHNN--LDP-LEEYADEEIWEALDKCQLGNEVRKNEGKL 242
+LR ++ + Q +F +V N L P L ++ E+I E D +L V + +
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD--ELLALVGLDPAEF 128
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT-DNL------IQHTL 295
R S GQ+Q V +AR L +L++DE ++D T D L +Q L
Sbjct: 129 ADRYP---HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185
Query: 296 GQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354
G+ T++ + H I +D + ++ G I + +P +L + ++ F VAE+
Sbjct: 186 GK-----TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF---VAEFVG 237
Query: 355 RS 356
Sbjct: 238 AD 239
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 6e-16
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 7/181 (3%)
Query: 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181
QV Y +L ++ + G I G +G GKSTL++ + ++ PT+G + +G D+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 182 SSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEG 240
S++ R ++S Q P +F +V +NL P + A L +
Sbjct: 68 STLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAA--LDLLARFALPDS 125
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS 300
L +T S G++Q + L R L K+L+LDE T+++D + I+ + ++
Sbjct: 126 ILTKNIT----ELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181
Query: 301 D 301
+
Sbjct: 182 E 182
|
Length = 223 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 9e-16
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 127 PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--IDISSI 184
P P VL+GL G ++G G+GKSTL+ L ++ P +G + IDG +D S
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 185 GLHDLRSRLSIIPQDP--TMFEGSVHN-------NLDPLEEYADEEIWEALDKCQLGNEV 235
GL + R R+ ++ QDP +F V NL E + + EAL
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-- 119
Query: 236 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
L R T S G+++ V +A + + VL+LDE TA +D A
Sbjct: 120 ------LRERPT---HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-15
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 35/228 (15%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSIGLHD--LRSRLSIIPQ 198
T +G +G GKST ++ R+ + G + IDGID+ S+ + LR+++ ++ Q
Sbjct: 34 TAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ 93
Query: 199 DPTMFEGSVHNN---------LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
P F S+++N L ++ DE + ++L L E L R+ ++
Sbjct: 94 KPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDS 146
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD----TATDNLIQHTLGQHFSDCTVI 305
S GQ+Q +C+AR + K +L++DE +++D +NLIQ L ++F T+I
Sbjct: 147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE-LKKNF---TII 202
Query: 306 TIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352
+ H + SD V G I E+++ + +N SS Y
Sbjct: 203 VVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSS---KTKRY 247
|
Length = 251 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-15
Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 20/167 (11%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-- 189
L+ + G IVG +GSGKSTL+ L + +PT+G + I+G D++ + +L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 190 --RSRLSIIPQD----PTMFEGSVHNNLD-PLE--EYADEEIWEALDKCQLGNEVRKNEG 240
R ++ + Q+ P + +V N++ PL + A + +L + +
Sbjct: 80 LRRKKIGFVFQNFNLLPDL---TVLENVELPLLIAGKSAGRRKRAAE--ELLEVLGLEDR 134
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
L+ + +E S GQ+Q V +AR L+ K+++ DE T ++D+ T
Sbjct: 135 LLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177
|
Length = 226 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 22/226 (9%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+ + T G ++G +GSGK+T ++ + R++EPT+G I IDG DIS + +LR
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 192 RLSIIPQDPTMFE--------GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLE 243
++ + Q +F +V L +E + E LD L + +
Sbjct: 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL------DPSEYA 129
Query: 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH---TLGQHFS 300
R S GQ+Q V +AR L +L++DE ++D T +Q L +
Sbjct: 130 DRYP---HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL- 185
Query: 301 DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345
T++ + H I + +D + ++ G I ++D+P +L N ++ F
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231
|
Length = 309 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 26/228 (11%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ GL Y L L+ T G ++G +G GK+TL++ + + P +G I
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLD-PL------EEYADEEIWEALD 227
IDG D++ + R + ++ QD +F +V N+ L + + E L+
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116
Query: 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
+G EG L E S GQ+Q V LAR L ++ +L+LDE +++D
Sbjct: 117 --LVG-----LEGLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165
Query: 288 DNLIQHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332
++ L Q T I + H + +D + +++ G I +
Sbjct: 166 REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-15
Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 17/211 (8%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-S 206
I+G TGSGKS L++T+ ++P +G I ++G DI+ L + +S +PQ+ +F +
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPHMT 87
Query: 207 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKL--ESRVTENGENWSMGQRQLVCLA 264
V+ N+ Y ++ DK ++ +V + L + + E S G++Q V +A
Sbjct: 88 VYKNI----AYGLKKRKV--DKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141
Query: 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVITIAHRITSV-IDSDMVL 321
R L+ K+L+LDE +++D T ++ L + TV+ + H +D V
Sbjct: 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVA 201
Query: 322 LLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352
++ G + + P + + + F VAE+
Sbjct: 202 IMLNGKLIQVGKPEEVFKKPKNEF---VAEF 229
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 2e-15
Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 21/212 (9%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T I+G +G GKST I+TL R+VE T G I +I S + +LR+ + ++ Q
Sbjct: 53 TAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQ 112
Query: 199 DPTMFEGSVHNNLD---PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255
P F S+++N+ + D++ + + + L +E L+ R+ +N S
Sbjct: 113 KPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE--LKDRLHDNAYGLSG 170
Query: 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTAT----DNLIQHTLGQHFSDCTVITIAHRI 311
GQ+Q +C+AR L + V+++DE T+++D + + L+Q L + +S +I + H +
Sbjct: 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDYS---IIIVTHNM 226
Query: 312 TSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342
SD G + E+D ++ N S
Sbjct: 227 QQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-15
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 20/173 (11%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
I + Y +L L+ G + G+ G+GK+TL + L +++ ++G I +
Sbjct: 1 RIENISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 177 DGIDISSIGLHDLRSRLSIIPQDPT--MFEGSVHNNLDP-LEEYAD--EEIWEALDKCQL 231
+G I + + R + + QD +F SV L L+E E+ L L
Sbjct: 60 NGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL 116
Query: 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
++ L S GQ+Q + +A LL +L+ DE T+ +D
Sbjct: 117 YALKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 3e-15
Identities = 77/353 (21%), Positives = 151/353 (42%), Gaps = 41/353 (11%)
Query: 12 FHIAAAMQWLC--FHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTF----GLNLNM 65
H W+C F + +++ ++V ++D A +++ LN+
Sbjct: 539 LHAVGTFTWVCTPFLVALITFAVYVTV------DENNILDAEKAFVSLALFNILRFPLNI 592
Query: 66 LQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRY 125
L +IS ++ +S++R+ ++ P IE R + +H +
Sbjct: 593 L-PMVIS---SIVQASVSLKRLRIFLSHEELEPDSIE--RRTIKPGEGNSITVHNATFTW 646
Query: 126 APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185
A LP L G+T + G +VG+ G GKS+L+ L ++ G + + G
Sbjct: 647 ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------- 699
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYADEEIWEALDKCQLGNEVRKNEGKL 242
++ +PQ + S+ N+ L E +++ EA C L ++
Sbjct: 700 ------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEA---CALLPDLEILPSGD 750
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT-ATDNLIQHTLGQH--F 299
+ + E G N S GQ+Q V LAR + + + + D+ ++VD ++ +H +G
Sbjct: 751 RTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810
Query: 300 SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352
+ T I + H I+ + D+++++S G I E S LL+ + +FA+ + Y
Sbjct: 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTY 862
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-15
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 25/211 (11%)
Query: 148 IVGRTGSGKSTLIQTLFRIVE--PTA---GLIAIDGIDISSIGLH--DLRSRLSIIPQDP 200
++G +G GKSTL++T R++E A G + + G +I S + ++R + ++ Q P
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94
Query: 201 ------TMFE----GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
T+++ G N L ++ DE + AL K L +EV+ R+ +
Sbjct: 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310
N S GQRQ + +AR L K K+L++DE TA++D I+ L + + T++ + H
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHS 207
Query: 311 ITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
SD V L G + E ++ EN
Sbjct: 208 PAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238
|
Length = 253 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 5e-15
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 31/195 (15%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-- 189
L+G++ + G IVG +GSGKSTL+ L + PT+G + +DG DIS + +L
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 190 --RSRLSIIPQD----PTMFEGSVHNNLD-PLE------EYADEEIWEALDKCQLGNEVR 236
R + + Q P + + N++ PL + E E L++ LG+ +
Sbjct: 79 FRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN 135
Query: 237 KNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG 296
+L S GQ+Q V +AR L K+++ DE T ++D+ T + L
Sbjct: 136 HYPSEL-----------SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 297 Q--HFSDCTVITIAH 309
+ + T++ + H
Sbjct: 185 ELNKEAGTTIVVVTH 199
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-15
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190
+ G++ T G TG++G G+GK+T ++ L ++EP AG +DG D+ + R
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA-EAR 77
Query: 191 SRLSIIPQDPTMFEG-SVHNNLDPLEEYAD------EEIWEALDKCQLGNEVRKNEGKLE 243
RL + +++ + N LE +A +E+ L++ L + + E L+
Sbjct: 78 RRLGFVSDSTGLYDRLTAREN---LEYFAGLYGLKGDELTARLEE--LADRLGMEE-LLD 131
Query: 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD-TATDNLIQHTLGQHFSDC 302
RV +S G RQ V +AR L+ VL+LDE T +D AT L +
Sbjct: 132 RRV----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187
Query: 303 TVITIAHRITSV 314
++ H + V
Sbjct: 188 CILFSTHIMQEV 199
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 8e-15
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 36/211 (17%)
Query: 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI-----VEPTAGLI 174
GL Y L ++ F T ++G +G GKST ++ L R+ G I
Sbjct: 11 GLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68
Query: 175 AIDGIDISSIGLH--DLRSRLSIIPQDPTMFEGSVHNNL----------DPLEEYADEEI 222
+DG +I + +LR R+ ++ Q P F S+ N+ D + Y E +
Sbjct: 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD--KAYLAERV 126
Query: 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282
+L L +EV+ R+ E+ S GQ+Q +C+AR L + +VL++DE ++
Sbjct: 127 ERSLRHAALWDEVK-------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 283 VD-TAT---DNLIQHTLGQHFSDCTVITIAH 309
+D AT + LI H L + T+I + H
Sbjct: 180 LDPIATQKIEELI-HELKARY---TIIIVTH 206
|
Length = 253 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (179), Expect = 8e-15
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 23/232 (9%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI------DISSIG 185
+L+ +T GI+G +GSGKSTL++ L R++E I +DG DI I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 186 LHDLRSRLSIIPQDPTMFEG-SVHNNLD-PLEEYADEE-------IWEALDKCQLGNEVR 236
LR + ++ Q P F S+++N+ PL+ + +E + E L K L EV
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 237 KNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG 296
R+ S GQ+Q + +AR L K KVL++DE T+ +D I+ +
Sbjct: 145 -------DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 297 QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
+ ++ ++ ++H V +D V L G + E+ S + + + +
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 8e-15
Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 37/229 (16%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI---GLHD 188
L+ ++ + G GI+GR+G+GKSTLI+ + + PT+G + +DG D++ + L
Sbjct: 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79
Query: 189 LRSRLSIIPQ------DPTMFEGSVHNNLDPLE------EYADEEIWEALDKCQLGNEVR 236
R R+ +I Q T+FE N PLE +E + E L+ +G
Sbjct: 80 ARRRIGMIFQHFNLLSSRTVFE----NVALPLEIAGVPKAEIEERVLELLE--LVG---- 129
Query: 237 KNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-TDNLIQ--H 293
LE + S GQ+Q V +AR L KVL+ DEAT+++D T +++
Sbjct: 130 -----LEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLR 184
Query: 294 TLGQHFSDCTVITIAHRITSVIDS--DMVLLLSYGLIEEFDSPTRLLEN 340
+ + T++ I H + V+ D V ++ G + E + + N
Sbjct: 185 DINREL-GLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 39/246 (15%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ G+ + + +L G+ G I+G +GSGKSTL++ + ++ P G I
Sbjct: 9 IEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 176 IDGIDI---SSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLD-PLEEYAD---EEIWE-AL 226
IDG DI S L+++R R+ ++ Q +F +V N+ PL E+ I E L
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 227 DKCQL----GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282
K +L G +L S G R+ V LAR + ++L LDE T+
Sbjct: 127 MKLELVGLRGAAADLYPSEL-----------SGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 283 VD----TATDNLI---QHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334
+D D LI LG TVI + H + S++ +D V +L+ G + +P
Sbjct: 176 LDPISAGVIDELIRELNDALG-----LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 335 TRLLEN 340
LL +
Sbjct: 231 EELLAS 236
|
Length = 263 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 8e-15
Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 22/163 (13%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--IDISSIGLHDLR 190
L+G+ G T I+G G+GKSTL Q L I++P++G I DG ID S GL LR
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 191 SRLSIIPQDP--TMFEGSVHN-------NLDPLEEYADEEIWEALDKCQLGNEVRKNEGK 241
+ ++ QDP +F SV+ NL E+ + + AL + + + K
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
L S GQ++ V +A VL+ + KVLVLDE TA +D
Sbjct: 142 L-----------SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
|
Length = 283 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-14
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+ GL+ T G + G G GK+TL++ L ++ P +G + +G ++ R+
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 192 RLSIIPQDPTMFEGSVHNNLD---PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248
L + E S NL + A I +AL L +L
Sbjct: 75 ILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL------ 128
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298
S GQ++ + LAR+ L ++ + +LDE T ++D A L+ L H
Sbjct: 129 -----SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 37/191 (19%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR-LSIIPQDPTMFE 204
++G G+GKSTL++ L + P +G I IDG ++ D + ++ + Q+ ++
Sbjct: 37 HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96
Query: 205 GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG------------------KLESRV 246
NL E I+ LG E + G L+
Sbjct: 97 -----NLSVAEN-----IF-------LGREPTRRFGLIDRKAMRRRARELLARLGLDIDP 139
Query: 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-TDNLIQHTLGQHFSDCTVI 305
+ S+ QRQ+V +AR L ++VL+LDE TA++ T+ L +I
Sbjct: 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAII 199
Query: 306 TIAHRITSVID 316
I+HR+ V +
Sbjct: 200 YISHRLDEVFE 210
|
Length = 500 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-14
Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 36/232 (15%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
++ GL R+ + L ++ + G G++G G+GK+TL + + PT+G +
Sbjct: 2 EVRGLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59
Query: 177 DGIDISSIGLHDLRSRLSIIP--QDPTMFEG-SVHNNLD-----------------PLEE 216
DG DI+ + H+ +RL I Q P +F +V N+ E
Sbjct: 60 DGEDITGLPPHE-IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREER 118
Query: 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276
A E E L++ L + + G+L S GQ++ + +AR L K+L+L
Sbjct: 119 EARERAEELLERVGLADLADRPAGEL-----------SYGQQRRLEIARALATDPKLLLL 167
Query: 277 DEATASVDTA-TDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326
DE A ++ T+ L + TV+ + H + V+ +D V +L G
Sbjct: 168 DEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 1e-14
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 24/226 (10%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTA---GLIAIDGIDISSIGLH 187
L+G+ F T ++G +G GKST ++TL R+ + P G +++ G +I +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 188 --DLRSRLSIIPQDPTMFEGSVHNN------LDPLEEYA--DEEIWEALDKCQLGNEVRK 237
LR ++ ++ Q P F S++ N L +++ A DE + +L + + +EV+
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK- 139
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
+ E+ + S GQ+Q VC+ARVL K V++LDE T+++D + I++ L +
Sbjct: 140 ------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193
Query: 298 HFSDCTVITIAHRI--TSVIDSDMVLLLSYGLIEEFDSPTRLLENK 341
T+I + H + S I L+ LIE D+ L K
Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPK 239
|
Length = 252 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 2e-14
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 39/182 (21%)
Query: 117 DIHGLQVRYAP-HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++ L Y +L G++ T G ++GR G+GK+TL++T+ ++ P +G I
Sbjct: 2 EVENLNAGYGKSQ---ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 176 IDGIDISSIGLHDLRSRLSI--IPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLG 232
DG DI+ + H+ R+R I +P+ +F +V NL LG
Sbjct: 59 FDGRDITGLPPHE-RARAGIGYVPEGRRIFPELTVEENL------------------LLG 99
Query: 233 NEVRKNEG-------------KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279
R+ +L+ R + S G++Q++ +AR L+ + K+L+LDE
Sbjct: 100 AYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159
Query: 280 TA 281
+
Sbjct: 160 SE 161
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 3e-14
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 25/180 (13%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++I L + VL+G++ + G I+G +GSGKSTL++ L + EP +G I
Sbjct: 3 IEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 176 IDGIDIS-SIGLHDLRSRLSIIPQDPTMF----------EGSVHNNLDPLEEYADEEIWE 224
+DG D+ + LR ++ ++ Q +F V E A E+ E
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAE-AREKALE 119
Query: 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
L+K L ++ +L S GQ+Q V +AR L KV++ DE T+++D
Sbjct: 120 LLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 49/227 (21%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD----PTMF 203
++G +G GKSTL++ + + EPT+G I IDG D++ L + ++++ Q+ P M
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD--LPPEKRGIAMVFQNYALYPHM- 90
Query: 204 EGSVHNNLD-PL------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256
+V+ N+ L + D+ + E L + + + +L S G
Sbjct: 91 --TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL-----------SGG 137
Query: 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNL-------IQHTLGQHFSDCTVITIAH 309
QRQ V LAR L++K KV +LDE +++D L + LG T I + H
Sbjct: 138 QRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGT-----TTIYVTH 192
Query: 310 RITSVID----SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352
++ +D +++++ G I++ +P L E ++ F VA +
Sbjct: 193 D---QVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF---VAGF 233
|
Length = 338 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-14
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 38/217 (17%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
+ L Y P+ L+ + G I+G +G+GKSTL++ + R+VEP++G I ++
Sbjct: 4 VENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLE 62
Query: 178 GIDISSIGLHDLRS---RLSIIPQDPTMFEG-SVHNN---------------LDPLEEYA 218
G DI+ + LR R+ +I Q + E +V N L E
Sbjct: 63 GTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED 122
Query: 219 DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278
E AL++ L K R + S GQ+Q V +AR L ++ +++ DE
Sbjct: 123 KERALSALERVGL-------ADKAYQRA----DQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 279 ATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315
AS+D T + L + I IT +I
Sbjct: 172 PIASLDPKTSKQVMDYLKR-------INKEDGITVII 201
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 39/252 (15%)
Query: 116 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---- 169
+++ L V +A +R ++ G GIVG +GSGKSTL L ++
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 170 TAGLIAIDGIDISSIGLHDLRS----RLSIIPQDPT------------MFEGS-VHNNLD 212
T+G + +DG D+ + ++R R+++I QDP + E +H
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272
E A + E L++ L + R++ + S G RQ V +A L K K
Sbjct: 126 RAE--ARKRAVELLEQVGLPDPERRDRYPHQ---------LSGGMRQRVMIAMALALKPK 174
Query: 273 VLVLDEATASVDTATDNLIQHTLGQHFSD---CTVITIAHRITSVID-SDMVLLLSYGLI 328
+L+ DE T ++D T I L + V+ I H + V + +D V+++ G I
Sbjct: 175 LLIADEPTTALDVTTQAQI-LDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
Query: 329 EEFDSPTRLLEN 340
E +L N
Sbjct: 234 VETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-14
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEP---TAGLIAIDGIDISS--IG 185
L ++ F T ++G +GSGKSTL++++ R+ + P G I +G +I S
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNN------LDPLEEYA--DEEIWEALDKCQLGNEVRK 237
DLR + ++ Q P F S++ N L +++ DE + ++L + +EV+
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK- 139
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
R+ ++ S GQ+Q VC+ARVL K+++LDE T+++D + I+ TL
Sbjct: 140 ------DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193
Query: 298 HFSDCTVITIAHRI--TSVIDSDMVLLLSYGLIE 329
D T++ + + S I L LIE
Sbjct: 194 LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227
|
Length = 252 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-14
Identities = 61/227 (26%), Positives = 95/227 (41%), Gaps = 36/227 (15%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
+ GL RY L ++ T G ++G G+GKSTL L R+ G I++
Sbjct: 4 VAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 178 GIDISSIGLHDLRSRLSIIPQDPTM-FEGSVHNNLDPLEEY-----------ADEEIWEA 225
G D+ L RL ++ Q PT+ + SV NL Y A I E
Sbjct: 62 GHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNL----RYHAALHGLSRAEARARIAEL 116
Query: 226 LDKCQLGNEVRKNEGKLESRVTE-NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
L + L + + +V E NG G R+ V +AR LL + +L+LDE T +D
Sbjct: 117 LARLGLA-------ERADDKVRELNG-----GHRRRVEIARALLHRPALLLLDEPTVGLD 164
Query: 285 TAT-DNLIQH--TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 328
A+ + H L + V+ H + + D +++L G +
Sbjct: 165 PASRAAITAHVRALARDQGLS-VLWATHLVDEIEADDRLVVLHRGRV 210
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 8e-14
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 116 VDIHGLQVRYAPHLPL---VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
+ + + PL L GL+ G ++G G+GKSTL+ + ++PT+G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDP---TMFEGSVHNNLDPLEE--------YADEE 221
I IDG+D++ + + L+ + QDP T E ++ NL E A E
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 222 IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281
+ + + + LE+R+++ S GQRQ + L L K+L+LDE TA
Sbjct: 122 RRRSSFR----ERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177
Query: 282 SVDTAT 287
++D T
Sbjct: 178 ALDPKT 183
|
Length = 263 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-14
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG---IDISSIGLHD 188
+L L T G I+G +GSGKSTL+ + + + +G + ++G ++S
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 189 L-RSRLSIIPQDPTMFEG-SVHNNLDPLEEYA-------DEEIWEALDKCQLGNEVRKNE 239
R +L + Q+ + E +V NLD +Y E+ EAL+K L
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
KL+ ++ E S G++Q V LAR +LK +++ DE T S+D + +
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEV 173
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 8e-14
Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 24/236 (10%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ + + RY L+ ++ + G IVG GSGKSTL + L ++ P AG I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDP-TMFEGS---------VHNNLDPLEEYADEEIWEA 225
+ G+ +S + D+R ++ ++ Q+P F G+ + N P EE E + +A
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV-ERVDQA 124
Query: 226 LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285
L +V +E + S GQ+Q V +A VL + +++LDEAT+ +D
Sbjct: 125 LR------QVG-----MEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 286 ATDNLIQHTLGQ--HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339
+ T+ Q TV++I H + +D V++++ G I E +P + +
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 9e-14
Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 27/197 (13%)
Query: 127 PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL 186
P+ L G+ + G +VG +G+GKSTL++ +++ PT+G I ++G D+S L
Sbjct: 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS--DL 68
Query: 187 HD-----LRSRLSIIPQDPTMF-EGSVHNNLD-PLE------EYADEEIWEALDKCQLGN 233
LR ++ ++ QD + + +V+ N+ LE + + AL+ +G
Sbjct: 69 RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALE--LVG- 125
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
L + S G++Q V +AR ++ +L+ DE T ++D T I +
Sbjct: 126 --------LSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 294 TLGQ-HFSDCTVITIAH 309
L + + + TV+ H
Sbjct: 178 LLKKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 83/334 (24%), Positives = 141/334 (42%), Gaps = 65/334 (19%)
Query: 23 FHIDMLSSIIFVFSL--FFIISVPEGVVDPAIA----GLAVTFGLNLNMLQASLISKLCN 76
F+ +L+SI V +L F + + G + PA A L LNML +L+S++ N
Sbjct: 525 FNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNML-PNLLSQVVN 583
Query: 77 -------LENRIISVERILQYMCIPNEPPL-----VIEASRPNCSWPSQGEVDIHGLQVR 124
+E ++S ERIL N PPL I SW S+
Sbjct: 584 ANVSLQRIEELLLSEERILA----QN-PPLQPGAPAISIKNGYFSWDSKTS--------- 629
Query: 125 YAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 184
P L + G IVG TG GK++LI + + + SS+
Sbjct: 630 -KP----TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH---------AETSSV 675
Query: 185 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLES 244
+R ++ +PQ +F +V N+ ++ E W A+D L +++ G+ +
Sbjct: 676 ---VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLT 732
Query: 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC-- 302
+ E G N S GQ+Q V +AR + S + + D+ +++D H Q F C
Sbjct: 733 EIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA-------HVAHQVFDSCMK 785
Query: 303 ------TVITIAHRITSVIDSDMVLLLSYGLIEE 330
T + + +++ + D ++L+S G+I+E
Sbjct: 786 DELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819
|
Length = 1495 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 27/221 (12%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGS 206
++G +G GK+TL++ L +P +G I +DG D++++ H LR ++++ Q +F +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 207 VHNNLD-PLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259
V N+ L+ + EAL QL E + + + S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQL-------EEFADRKPHQ----LSGGQQQ 107
Query: 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVITIAHRITSVID- 316
V LAR L+ K K+L+LDE +++D + +Q L Q T + + H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 317 SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
SD + ++ G I + +P + E ++ F VA + N
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLF---VARFIGEIN 205
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 23/165 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
VL G+ + G G+VG G+GK+TL++ + + PTAG + + G D+ ++
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 192 RLSIIPQDPTM-FEGSVH-----------NNLDPLEEYADEEIWEALDKCQLGNEVRKNE 239
R++ +PQD ++ FE V + D E + A+++ + +
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP- 136
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
VT S G+RQ V LAR L + + VL+LDE TAS+D
Sbjct: 137 ------VTS----LSGGERQRVLLARALAQATPVLLLDEPTASLD 171
|
Length = 402 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-13
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195
TF G T IVG +GSGKSTL+ + P +G + I+G+D+++ +S+
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA--APPADRPVSM 74
Query: 196 IPQDPTMF-----EGSVHNNLDP---LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVT 247
+ Q+ +F E +V L P L + I AL + L ++ G+L
Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL----- 129
Query: 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-TDNLIQHTLGQHF-SDCTVI 305
S G+RQ V LARVL++ VL+LDE A++D A ++ L H + TV+
Sbjct: 130 ------SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVL 183
Query: 306 TIAH 309
+ H
Sbjct: 184 MVTH 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 34/180 (18%)
Query: 117 DIHGLQVRYAP-HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++ L Y LRG++ G ++GR G+GK+TL++T+ +V P +G I
Sbjct: 5 EVENLSAGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 176 IDGIDISSIGLHDL-RSRLSIIPQDPTMF-EGSVHNNL------DPLEEYADEEIWEALD 227
DG DI+ + H+ R ++ +P+ +F +V NL +E + ++ E +
Sbjct: 62 FDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYE 121
Query: 228 -----KCQLGNEVRKNE-GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281
K E R G L S G++Q++ +AR L+ + K+L+LDE +
Sbjct: 122 LFPRLK-----ERRNQRAGTL-----------SGGEQQMLAIARALMSRPKLLLLDEPSE 165
|
Length = 237 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-13
Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T ++G +G GKST ++ L R+ + G + +DG +I + + +LR R+ ++ Q
Sbjct: 33 TALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ 92
Query: 199 DPTMFEGSVHNNL----------DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248
P F S+++N+ D E D+ + AL K L +EV+ + K
Sbjct: 93 KPNPFPMSIYDNVAYGPRIHGIKDKKE--LDKIVEWALKKAALWDEVKDDLKK------- 143
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIA 308
+ S GQ+Q +C+AR + K V+++DE T+++D + I+ + + + T++ +
Sbjct: 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVT 203
Query: 309 HRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342
H + SD G + EF+ ++
Sbjct: 204 HNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ 238
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-13
Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 33/216 (15%)
Query: 146 TGIVGRTGSGKSTLIQTLFRI-----VEPTAGLIAIDGIDISS--IGLHDLRSRLSIIPQ 198
T ++G +GSGKST +++L R+ + G I GIDI+ I ++++R + ++ Q
Sbjct: 49 TALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQ 108
Query: 199 DPTMFEGSVHNNLDPLEEYA--------DEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
P F S++ N+ E A DE + +L + L ++V+ + K S +T +G
Sbjct: 109 RPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHK--SALTLSG 166
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH- 309
GQ+Q +C+AR + K +L++DE +++D + ++ T+ + + T+I + H
Sbjct: 167 -----GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221
Query: 310 -----RITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340
R SD G + E+D + N
Sbjct: 222 MQQAARA-----SDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-13
Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 26/232 (11%)
Query: 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL- 173
++ I G+ Y H VL+ + F T I+G +G GKSTL++ L R+ + +G
Sbjct: 4 KIKIRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 174 ----IAIDGIDISSIGLH--DLRSRLSIIPQDPTMFEGSVHNNLD--------PLEEYAD 219
+ +D +I S L +LR R+ ++ Q P F S+ +N+ + D
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279
E + ++L + L +EV+ N + ++G S GQ+Q +C+ARVL + +V+++DE
Sbjct: 122 EVVEKSLRQAALWDEVKDN-------LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 280 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI-DSDMV-LLLSYGLIE 329
+++D + I+ + + + T+ + H + SD LL+ L+E
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226
|
Length = 251 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 58/263 (22%), Positives = 112/263 (42%), Gaps = 52/263 (19%)
Query: 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171
+ ++I + + + ++ G ++G +G GK+TL++ + +P++
Sbjct: 2 PKPALEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 172 GLIAIDGIDISSIGLHDLRSRLSIIPQD----PTMFEGSVHNNL--------DPLEEYAD 219
G I +DG DI+ + + + ++ Q P M +V N+ +
Sbjct: 60 GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHM---TVEENVAFGLKVRKKLKKAEIK 114
Query: 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279
+ EAL+ L EG + + + S GQ+Q V LAR L+ + KVL+LDE
Sbjct: 115 ARVEEALELVGL-------EGFADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEP 163
Query: 280 TASVDTATDNL----------IQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLI 328
+++D L +Q LG T + + H + SD + +++ G I
Sbjct: 164 LSALDA---KLREQMRKELKELQRELGI-----TFVYVTHDQEEALAMSDRIAVMNDGRI 215
Query: 329 EEFDSPTRLLENKSSSFAQLVAE 351
E+ +P + E ++ F VA+
Sbjct: 216 EQVGTPEEIYERPATRF---VAD 235
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-13
Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
+ L Y L+ + G I+G +G+GKSTL+++L +V+PT+G I +
Sbjct: 6 VKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFN 64
Query: 178 GIDISSI---GLHDLRSRLSIIPQDPTMFEG-SVHNN-----------------LDPLEE 216
G+ I+ + L LR + +I Q + SV N L E+
Sbjct: 65 GVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKED 124
Query: 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276
A +AL++ + ++ + L S GQ+Q V +AR L+++ K+++
Sbjct: 125 KAQ--ALDALERVGILDKAYQRASTL-----------SGGQQQRVAIARALVQQPKIILA 171
Query: 277 DEATASVDTATDNLIQHTL 295
DE AS+D + + L
Sbjct: 172 DEPVASLDPESAKKVMDIL 190
|
Length = 258 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 3e-13
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183
Y P LR ++ G + G +G+GKSTL++ ++ PT G I ++G D+S
Sbjct: 10 AY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68
Query: 184 IGLHD---LRSRLSIIPQD----PTMFEGSVHNNLD-PLE------EYADEEIWEALDKC 229
+ + LR ++ ++ QD P +V+ N+ PL + E LD
Sbjct: 69 LKGREIPFLRRQIGVVFQDFRLLPDR---TVYENVALPLRVIGKPPREIRRRVSEVLDLV 125
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
L ++ R +L S G++Q V +AR ++ + VL+ DE T ++D
Sbjct: 126 GLKHKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
|
Length = 223 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 3e-13
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 56/197 (28%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ G+ R+ L G++ + G ++G G+GKSTL++ L + +P +G I
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEV 235
+DG ++S D R R I V+ QL
Sbjct: 59 VDGKEVSFASPRDAR-RAGI---------AMVY---------------------QL---- 83
Query: 236 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-TDNLIQHT 294
S+G+RQ+V +AR L + +++L+LDE TA++ A + L +
Sbjct: 84 ------------------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI 125
Query: 295 LGQHFSDCTVITIAHRI 311
VI I+HR+
Sbjct: 126 RRLRAQGVAVIFISHRL 142
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 4e-13
Identities = 47/181 (25%), Positives = 97/181 (53%), Gaps = 22/181 (12%)
Query: 146 TGIVGRTGSGKSTLIQTLFRI--VEPT---AGLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T ++G +G GKST I+TL R+ + P G I +DG+DI ++ + +LR ++ ++ Q
Sbjct: 32 TALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQ 91
Query: 199 DPTMFEGSVHNNL--------DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
P F S+ +N+ + E++ +E + E+L L +EV + ++ ++
Sbjct: 92 KPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV-------KDKLDKSA 144
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310
S GQ+Q +C+AR + +V+++DE +++D + I+ + + D T++ + H
Sbjct: 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
Query: 311 I 311
+
Sbjct: 205 M 205
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-13
Identities = 46/178 (25%), Positives = 91/178 (51%), Gaps = 21/178 (11%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTAG-----LIAIDGIDI-SSIGLHDLRSRLSIIPQD 199
T ++G +G GKSTL++ L R+ + G + +DG DI +I + DLR ++ ++ Q
Sbjct: 32 TALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQK 91
Query: 200 PTMFEGSVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251
P F S++ N+ ++ DE + +L L +EV+ R+ +
Sbjct: 92 PNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAF 144
Query: 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
S GQ+Q +C+AR + + V+++DE T+++D + I+ + + + T++ + H
Sbjct: 145 GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 4e-13
Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 33/251 (13%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++I G+ + VL + + G I+G +G GKSTL++ + + +PT+G +
Sbjct: 4 LEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLD-PLE------EYADEEIWEALD 227
+DG ++ G + + Q+ + +V +N+ LE A E E L+
Sbjct: 62 LDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
L K +L S G RQ V +AR L + K+L+LDE ++D T
Sbjct: 117 LVGLAGFEDKYPHQL-----------SGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 288 DNLIQHTLGQ--HFSDCTVITIAHRITSVID-SDMVLLLSYG---LIEEFDSP-TRLLEN 340
+Q L + + TV+ + H + + +D V++LS + EE + R
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIR 225
Query: 341 KSSSFAQLVAE 351
F +L E
Sbjct: 226 GDPEFLELREE 236
|
Length = 248 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 5e-13
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 56/204 (27%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGS 206
G+VG +G GKSTL + + + EPT+G I +G DI+ +
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL---------------------- 80
Query: 207 VHNNLDPLEEYADEEIWEALDKCQLGNEV-RKNEGKLESRVTENGENWSMGQRQLVCLAR 265
+E E + E L+K L E + +L S GQRQ + +AR
Sbjct: 81 -------SKEERRERVLELLEKVGLPEEFLYRYPHEL-----------SGGQRQRIGIAR 122
Query: 266 VLLKKSKVLVLDEATASVDTATD----NL---IQHTLGQHFSDCTVITIAHRITSVID-- 316
L K++V DE +++D + NL +Q LG T + I+H + SV+
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG-----LTYLFISHDL-SVVRYI 176
Query: 317 SDMVLLLSYGLIEEFDSPTRLLEN 340
SD + ++ G I E + N
Sbjct: 177 SDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-13
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
L V Y +L L+ + G T ++G G GKSTL++ R++ P +G + +
Sbjct: 5 TENLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 178 GIDISSIGLHDLRSRLSIIPQDPTMFEG-----------SVHNNLDPLEEYADEEIWE-A 225
IS + L RL+++PQ EG S +L D A
Sbjct: 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122
Query: 226 LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+++ ++ + + R+T+ S GQRQ LA VL + + V++LDE T +D
Sbjct: 123 MEQTRINHLADR-------RLTD----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
|
Length = 255 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 5e-13
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQDPTMF 203
I+G +GSGKST ++ L R++EPTAG I IDG +I +L R ++ ++ Q +F
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 204 -EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262
++ N E W ++ + E+ K G LE + S G +Q V
Sbjct: 84 PHMTILQNTSLGPELLG---WPEQERKEKALELLKLVG-LEEYEHRYPDELSGGMQQRVG 139
Query: 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVITIAHRITSVID-SDM 319
LAR L + +L++DEA +++D + +Q L Q T++ I H + I D
Sbjct: 140 LARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDR 199
Query: 320 VLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
++++ G I + +P +L N ++ + +
Sbjct: 200 IVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-13
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 22/179 (12%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T +G +G GKSTL++T R+ E P G I +DG +I + LR+++ ++ Q
Sbjct: 42 TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQ 101
Query: 199 DPTMFEGSVHNNLD---PLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
PT F S+++N+ L E DE + AL K L NEV+ ++ ++G
Sbjct: 102 KPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSG 154
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
+ S GQ+Q +C+AR + + +VL+LDE +++D + I+ + + D TV+ + H
Sbjct: 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-13
Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 39/236 (16%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTA-----GLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T ++G +G GKST ++ L R+ + G + +DG DI + L +LR R+ ++ Q
Sbjct: 74 TALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQ 133
Query: 199 DPTMFEGSVHNN-------------------LDPLEEYADEEIWE-ALDKCQLGNEVRKN 238
P F S+ N L ++ A++E+ E +L + L +EV
Sbjct: 134 SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV--- 190
Query: 239 EGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298
R+ +N S GQ+Q +C+AR L +V+++DE +++D + I+ + +
Sbjct: 191 ----NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL 246
Query: 299 FSDCTVITIAHRITSV--IDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352
+ TV+ + H + I + L+ G + E+D ++ EN S Q V +Y
Sbjct: 247 AEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPES---QRVEDY 299
|
Length = 305 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 7e-13
Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 23/228 (10%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL-----IAIDGIDISS--IG 185
L + L T ++G +G GKST ++TL R+ + G+ + +G +I S
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRK 237
+ +LR ++ ++ Q P F S+++N+ ++ DE + ++L K L NEV+
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK- 141
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
++ N + S GQ+Q +C+AR L + V+++DE T+++D + I+ +
Sbjct: 142 ------DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195
Query: 298 HFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSS 344
T+I + H + SD G IEE S L N ++
Sbjct: 196 LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNT 243
|
Length = 254 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 8e-13
Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTA---GLIAIDGIDI--SSIG 185
L+G++ +G +G GKST ++ R+ + P G I IDG +I +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRK 237
+ +LR + ++ Q P F S+ N+ + + + E L L +EV+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
++ E+ S GQ+Q +C+AR + VL++DE +++D + ++ + +
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 298 HFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
D T++ + H + SD G + E+D ++ N Q
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 9e-13
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 20/220 (9%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRS 191
L + G GI+G+ GSGKSTL L ++ P G + + GID L +R
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 192 RLSIIPQDP-TMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKN------EGKLE 243
+ I+ Q+P T F G +V +L + E + C E+RK E LE
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDL----AFGPENL------CLPPIEIRKRVDRALAEIGLE 127
Query: 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ-HFSDC 302
+ + S GQ Q V LA +L + + L+ DE T+ +D + + + + H
Sbjct: 128 KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 303 TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKS 342
T++ I H + + D+D ++++ G I P +L + S
Sbjct: 188 TIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
Length = 274 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
V+ ++ G G++G G+GK+T + +V P +G I +D DI+ + +H R+
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRA 77
Query: 192 RLSI--IPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248
RL I +PQ+ ++F +V +N+ + E ++++ +A K +L + E +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL--EEFHITHLRDS 135
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ S G+R+ V +AR L K ++LDE A VD
Sbjct: 136 KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-12
Identities = 53/222 (23%), Positives = 107/222 (48%), Gaps = 25/222 (11%)
Query: 146 TGIVGRTGSGKSTLIQTLFRI-----VEPTAGLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T ++G +G GKST ++ + R+ G + G ++ + + LR R+ ++ Q
Sbjct: 68 TAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQ 127
Query: 199 DPTMFEGSVHNN------LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252
P F S+++N + + DE + E+L + L +EV + ++ +G +
Sbjct: 128 KPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLD 180
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312
S GQ+Q +C+AR + +V+++DE +++D + I+ + + + TV+ + H +
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQ 240
Query: 313 SV--IDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352
I + L+ G + EFD ++ EN S Q V +Y
Sbjct: 241 QAARISDKTAVFLTGGELVEFDDTDKIFENPES---QRVEDY 279
|
Length = 285 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 30/155 (19%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LRSRLSIIPQDP--- 200
G+VG +GSGKSTL L R++ G I DG DI + + LR R+ ++ QDP
Sbjct: 317 GLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375
Query: 201 ---------TMFEG-SVHN-NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
+ EG VH L E D+ + EAL EV + E
Sbjct: 376 LSPRMTVGQIIEEGLRVHEPKLSAAER--DQRVIEAL------EEVGLDPATRNRYPHE- 426
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+S GQRQ + +AR L+ K ++++LDE T+++D
Sbjct: 427 ---FSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 1e-12
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T I+G +G GKST I+TL RI E G++ G +I I ++ LR ++ ++ Q
Sbjct: 36 TAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ 95
Query: 199 DPTMFEGSVHNNL---------DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
P F S++ N+ P + DE + AL L EV+ ++ ++
Sbjct: 96 RPNPFPMSIYENVAYGVRISAKLPQADL-DEIVESALKGAALWQEVK-------DKLNKS 147
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
S GQ+Q +C+AR L K KVL++DE +++D ++ + S+ T+ + H
Sbjct: 148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTH 207
Query: 310 RITSVID-SDMVLLLS-----YGLIEEFDSPTRLLEN 340
+ SD S G + EF T++ N
Sbjct: 208 NMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (163), Expect = 1e-12
Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 30/234 (12%)
Query: 125 YAPHLPLVLRGLTCTFL---GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181
Y P+ P R L L G T ++G TGSGKSTL+Q L +++PT G + + I +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 182 SSIG----LHDLRSRLSIIPQDP--TMFEGSV-------HNNLDPLEEYADEEIWEALDK 228
SS + +R ++ ++ Q P +FE +V N +E A++ E L+
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEM 130
Query: 229 CQLGNEV-RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD-TA 286
L +E K+ +L S GQ + V +A +L + +VLVLDE TA +D A
Sbjct: 131 VGLADEFWEKSPFEL-----------SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
Query: 287 TDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339
++Q H S TV+ + H + V D +D V LL G I +P+ + +
Sbjct: 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-12
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 38/221 (17%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202
G ++G +GSGKSTL++ + + +P +G I ++G D + + D ++ + Q +
Sbjct: 26 GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--RKIGFVFQHYAL 83
Query: 203 FEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRK-NEGKLESRVTENGE--------- 251
F+ +V +N+ G E+RK + K+++RV E E
Sbjct: 84 FKHLTVRDNI------------------AFGLEIRKHPKAKIKARVEELLELVQLEGLGD 125
Query: 252 ----NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ--HFSDCTVI 305
S GQRQ V LAR L + +VL+LDE ++D ++ L + T +
Sbjct: 126 RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 306 TIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345
+ H ++ +D ++++S G IE+ SP + ++ ++ F
Sbjct: 186 FVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 1e-12
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS----RLSIIPQD-PTM 202
I+G +GSGKST+++ L R++EPT G + IDG+DI+ I +LR +++++ Q M
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 203 FEGSVHNN----LDPLEEYADEEIWEALDKC-QLGNEVRKNEGKLESRVTENGENWSMGQ 257
+V +N ++ A+E +ALD Q+G LE+ + S G
Sbjct: 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVG---------LENYAHSYPDELSGGM 169
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVITIAHRITSVI 315
RQ V LAR L +L++DEA +++D +Q L Q T++ I+H + +
Sbjct: 170 RQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAM 229
Query: 316 D-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
D + ++ G + + +P +L N ++ + +
Sbjct: 230 RIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 41/220 (18%)
Query: 146 TGIVGRTGSGKSTLIQTLFR---IVE--PTAGLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T ++G +G GKST ++TL R ++ G + +DG DI S I ++ LR R+ ++ Q
Sbjct: 32 TALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQ 91
Query: 199 DPTMFEGSVHNNLDPLEEYA------------DEEIWEALDKCQLGNEVRKNEGKLESRV 246
P F S+++N+ Y DE + ++L L +EV+ R+
Sbjct: 92 QPNPFPMSIYDNV----AYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRL 140
Query: 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVIT 306
++ S GQ+Q +C+AR L + +VL++DE T+++D + I+ + + D T++
Sbjct: 141 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVI 200
Query: 307 IAH------RITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340
+ H RI SD G I EF L N
Sbjct: 201 VTHNMQQASRI-----SDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 31/238 (13%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ L Y +R ++ G TG++G G+GK+TL++ + ++ P +G +
Sbjct: 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 176 IDGIDISS--------IG-LHDLRS---RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIW 223
IDG+D IG L R RL+ ++ + ++ + I
Sbjct: 61 IDGVDTVRDPSFVRRKIGVLFGERGLYARLTA--RENLKYFARLN---GLSRKEIKARIA 115
Query: 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283
E + QL + + G+ S G +Q V +AR L+ +LVLDE T+ +
Sbjct: 116 ELSKRLQLLEYLDRRVGEF-----------STGMKQKVAIARALVHDPSILVLDEPTSGL 164
Query: 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS--DMVLLLSYGLIEEFDSPTRLLE 339
D T + Q ++ + + I +++ D V++L G + S L
Sbjct: 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 32/230 (13%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG---IDISSIGLHDLRSRLSIIPQDPTM 202
++G +G+GKSTL++ + + P AG I ++G D+S++ + D ++ + Q +
Sbjct: 31 VALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD--RKVGFVFQHYAL 88
Query: 203 FEG-SVHNN---------LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252
F +V +N P E + E L QL L R
Sbjct: 89 FPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG--------LADRYPAQ--- 137
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVITIAHR 310
S GQRQ V LAR L + KVL+LDE ++D ++ L T + + H
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD 197
Query: 311 ITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSS 359
++ +D V++L+ G IE+ P + ++ +S F VA + N
Sbjct: 198 QEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF---VARFLGEVNVL 244
|
Length = 345 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-12
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGS 206
G++G G+GKSTL++ + I+ PT+G I DG + DL S+I P +
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLHKIGSLIESPPLYENLT 86
Query: 207 VHNNLD---PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263
NL L D I E L+ L N +K + +S+G +Q + +
Sbjct: 87 ARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQ-----------FSLGMKQRLGI 135
Query: 264 ARVLLKKSKVLVLDEATASVD 284
A LL K+L+LDE T +D
Sbjct: 136 AIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-12
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-TMFEGS 206
I+G GSGKST ++ + ++E +G I IDG ++ + D+R ++ ++ Q+P F G+
Sbjct: 38 IIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97
Query: 207 ---------VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257
+ N P EE E + EAL+ + + + +L S GQ
Sbjct: 98 TVEDDVAFGLENKGIPHEEMK-ERVNEALELVGMQDFKEREPARL-----------SGGQ 145
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVD-TATDNLIQHTLG-QHFSDCTVITIAHRITSVI 315
+Q V +A + + K+++LDEAT+ +D LI+ G + TVI+I H + V
Sbjct: 146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205
Query: 316 DSDMVLLLSYGLIEEFDSPTRL 337
SD VL++ G +E +P L
Sbjct: 206 LSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-12
Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Query: 128 HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 187
HLP+ T G I+G +G+GKSTL+ + P +G I I+G+D +
Sbjct: 13 HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT--ASP 67
Query: 188 DLRSRLSIIPQDPTMFEG-SVHNNLD-------PLEEYADEEIWEALDKCQLGNEVRKNE 239
+S++ Q+ +F +V N+ L E++ A Q+G
Sbjct: 68 PAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA--AQVG------- 118
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299
L + S GQRQ V LAR L+++ +L+LDE +++D A + + Q
Sbjct: 119 --LAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176
Query: 300 S--DCTVITIAHRITSVIDS-DMVLLLSYGLIEEFDSPTRLLENKSS 343
T++ + H D V+ L G I S LL K+S
Sbjct: 177 DERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 48/242 (19%)
Query: 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177
+ L + Y +L ++ T G + G+VGR G+GKSTL++ L +EP +G +
Sbjct: 6 LENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP 63
Query: 178 GIDISSIGLHDLRSRLSIIPQDPTMFEG--SVHNNLDPLEEY--ADEEIWEALDKCQLGN 233
GL R+ + Q+P + + ++ E E+ EA +
Sbjct: 64 K------GL-----RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPD 112
Query: 234 EVRKNEG----------KLESRVTE-------NGENWSM-----GQRQLVCLARVLLKKS 271
+ E LE+R E E+ + G R+ V LAR LL++
Sbjct: 113 DELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEP 172
Query: 272 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH-R------ITSVIDSDMVLLLS 324
+L+LDE T +D + ++ L ++ TVI ++H R T +++ D L
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSHDRYFLDNVATHILELDRGKLTP 230
Query: 325 YG 326
Y
Sbjct: 231 YK 232
|
Length = 530 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-12
Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 23/224 (10%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSIGLH 187
L +T + T ++G +G GKSTL++ R+ + G I +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 188 --DLRSRLSIIPQDPTMFEGSVHNNL--------DPLEEYADEEIWEALDKCQLGNEVRK 237
LR ++ ++ Q P F S++ N+ + ++ D + ++L L +EV+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK- 140
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
R+ ++ + S GQ+Q +C+AR L +V+++DE +++D I+ +
Sbjct: 141 ------DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 298 HFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
+ TVI + H + SD + G + EFD T++ EN
Sbjct: 195 LKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-12
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS-RLSIIPQDP- 200
G I+G GSGKSTL + L ++EPT+G I I+ + G + RS R+ +I QDP
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSKRIRMIFQDPN 97
Query: 201 ----------TMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
+ + + N D E ++I+E L + G L
Sbjct: 98 TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETL----------RMVGLLPDHANYYP 147
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
+ GQ+Q V LAR L+ + K+++ DEA AS+D +
Sbjct: 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMS 183
|
Length = 267 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 124 RYAPHLPLVLRGLT---CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180
RY P R L + G I+G TGSGKSTL+Q L +++PT+G + I
Sbjct: 11 RYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERV 70
Query: 181 ISS----IGLHDLRSRLSIIPQDP--TMFEGSVHNNL--DPLEEYADEEIWEALDKCQLG 232
I++ L LR ++ I+ Q P +FE +V ++ P+ EE +A K +
Sbjct: 71 ITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE--DAKQKAR-- 126
Query: 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
E+ + G E + + S GQ + V +A VL + +VLVLDE TA +D
Sbjct: 127 -EMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
Length = 290 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 5e-12
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 27/188 (14%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GS 206
+VG +G GKSTL++ + + PT+G + +DG ++ G + Q + +
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-----PDRGYVFQQDALLPWLT 89
Query: 207 VHNN-LDPLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259
V +N LE A E E L+ L +L S G RQ
Sbjct: 90 VLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQL-----------SGGMRQ 138
Query: 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC--TVITIAHRIT-SVID 316
V LAR L VL+LDE +++D T +Q L + + TV+ + H I +V
Sbjct: 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFL 198
Query: 317 SDMVLLLS 324
+D V++LS
Sbjct: 199 ADRVVVLS 206
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 6e-12
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDLRSRLSIIPQD 199
G T ++G GSGKST+ + + ++ P I +DGI +++ + D+R ++ I+ Q+
Sbjct: 33 GSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQN 92
Query: 200 P-TMFEGS---------VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
P F G+ + N P E ++ +V + G L+ +E
Sbjct: 93 PDNQFVGATVGDDVAFGLENRAVPRPEMI-----------KIVRDVLADVGMLDYIDSEP 141
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN----LIQHTLGQHFSDCTVI 305
N S GQ+Q V +A +L + K+++LDE+T+ +D A LI+ + ++ TVI
Sbjct: 142 -ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL--KKKNNLTVI 198
Query: 306 TIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340
+I H I +D VL+L G + SP +
Sbjct: 199 SITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-12
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 48/204 (23%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGLIAIDGIDISSIGLHDL 189
+L+ ++ G T I+G +G+GKSTL+ L R +G + I+G +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSF 80
Query: 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALD---KCQLGNEVRKNEGKLESRV 246
R + +PQD +H L + E L K +
Sbjct: 81 RKIIGYVPQD-----DILHPTL---------TVRETLMFAAKLR---------------- 110
Query: 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD--CTV 304
S G+R+ V +A L+ +L LDE T+ +D+++ + L + +D T+
Sbjct: 111 -----GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLL-RRLADTGRTI 164
Query: 305 ITIAHRITSVIDS--DMVLLLSYG 326
I H+ +S I D +LLLS G
Sbjct: 165 ICSIHQPSSEIFELFDKLLLLSQG 188
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 6e-12
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Query: 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI 179
L RY V+ G++ + G G++G G+GK+T + +V+P +G I +DG
Sbjct: 5 NLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ 62
Query: 180 DISSIGLHDLRSRLSII--PQDPTMFEG-SVHNNLD-------PLEEYADEEIWEALDKC 229
DI+ + +H R+RL I PQ+ ++F +V N+ ++ +E++ E L++
Sbjct: 63 DITKLPMHK-RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEF 121
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289
+ +RK+ + S G+R+ V +AR L K L+LDE A VD
Sbjct: 122 HIT-HLRKS----------KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170
Query: 290 LIQHTLGQ 297
IQ +
Sbjct: 171 DIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-12
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 31/182 (17%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDI--SSIG 185
L + T +G +G GKST ++ L R+ + G I +DG DI +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNN---------LDPLEEYADEEIWEALDKCQLGNEVR 236
+ +LR+R+ ++ Q P F S++ N L + DE + +L K L EV+
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 237 KNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE--------ATASVDTATD 288
R+ E G S GQ+Q +C+AR + +V+++DE ATA V+ D
Sbjct: 155 -------DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 289 NL 290
L
Sbjct: 208 EL 209
|
Length = 267 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 8e-12
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHD 188
L L + G I+GR GSGKST+ + + ++ P+ G + +DG+D S L D
Sbjct: 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82
Query: 189 LRSRLSIIPQDP------TMFEGSVH---NNLDPLEEYADEEIWEALDKCQLGNEVRKNE 239
+R++ ++ Q+P T+ E V NL E E + E+L K + E R++
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM-YEYRRHA 141
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ-- 297
L S GQ+Q V +A +L + + ++ DE TA +D + + +T+ +
Sbjct: 142 PHL----------LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELN 191
Query: 298 HFSDCTVITIAHRITSVIDSDMVLLLSYGLI 328
T+I I H + +++D ++++ G +
Sbjct: 192 KKYGITIILITHYMEEAVEADRIIVMDSGKV 222
|
Length = 280 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 8e-12
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 7/191 (3%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR----LSIIPQ 198
G T IVG+ G GKS+L+ + ++ G + + S RSR ++ Q
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQ 86
Query: 199 DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258
P + +V N+ + + D C L ++ ++ + E G N S GQR
Sbjct: 87 KPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQR 146
Query: 259 QLVCLARVLLKKSKVLVLDEATASVDT-ATDNLIQHTLGQHFSD--CTVITIAHRITSVI 315
Q +C+AR L + + ++ LD+ +++D +D+L+Q + + D T++ + H++ +
Sbjct: 147 QRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206
Query: 316 DSDMVLLLSYG 326
+D ++ + G
Sbjct: 207 HADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 9e-12
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 41/244 (16%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL-----IAIDGIDISSI-G 185
VL ++ F T ++G TGSGK+T ++TL R+ + +G + + G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNN---------LDPLEEY--------ADEEIWEALDK 228
+ + R R+ ++ Q P F S+ +N L P +E+ + +W+A+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-- 153
Query: 229 CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288
+ R++++ S GQ+QL+CLAR L +VL+LDE T+++D T
Sbjct: 154 --------------KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 289 NLIQHTLGQHFSDCTVITIAHRITSV--IDSDMVLLLSYGLIEEFDSPTRLLENKSSSFA 346
I+ + TVI + H + I L L+EE + K + A
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETA 259
Query: 347 QLVA 350
+ VA
Sbjct: 260 RYVA 263
|
Length = 276 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+LR ++ + G T ++G TGSGKSTL+Q+L E + G + + RS
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS 722
Query: 192 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251
++ +PQ + +V N+ +E + +A+ QL ++ + G LE+ + E G
Sbjct: 723 -IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGV 781
Query: 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT--LGQHFSDCTVITIAH 309
N S GQ+ V LAR + V +LD+ +++D + LG + T + H
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATH 840
Query: 310 RITSVIDSDMVLLLSYGLIE 329
++ V +D V+ L G +E
Sbjct: 841 QVHVVPRADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 1e-11
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 19/220 (8%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
V+ ++ T G G++G G+GK+T + IV AG I ID DIS + LH R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 192 RLSI--IPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248
R I +PQ+ ++F SV++NL A +I + L Q E R NE E +
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNL-----MAVLQIRDDLSAEQ--REDRANELMEEFHIEH 129
Query: 249 ----NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD--C 302
G++ S G+R+ V +AR L K ++LDE A VD + I+ + +H D
Sbjct: 130 LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLRDSGL 188
Query: 303 TVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341
V+ H + + + ++S G + +PT +L+++
Sbjct: 189 GVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 25/219 (11%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL---RSRLSIIPQD 199
G G++G +G+GKSTLI+ + + PT+G + +DG D++++ +L R ++ +I Q
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQH 90
Query: 200 PTMFEG-SVHNNLD-PLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251
+ +V N+ PLE + ++ E L LG+ K +S +
Sbjct: 91 FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-------KHDSYPS---- 139
Query: 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ--HFSDCTVITIAH 309
N S GQ+Q V +AR L KVL+ DEAT+++D AT I L + T++ I H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
Query: 310 RITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
+ V D V ++S G + E + + + + + AQ
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 1e-11
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 22/210 (10%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSIGLH--DLRSRLSIIPQ 198
T ++G +G GKST I+ L R+ + G ++I+G DI + +LR + ++ Q
Sbjct: 41 TALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQ 100
Query: 199 DPTMFEGSVHNNL--DPLEEYADEE-----IWEALDKCQLGNEVRKNEGKLESRVTENGE 251
P F S+++N+ P A+++ + AL L +E R+
Sbjct: 101 KPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPAL 153
Query: 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRI 311
+ S GQ+Q +C+AR L K K+++ DE T+++D + I+ + D T++ + H +
Sbjct: 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNM 213
Query: 312 TSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
SD G + EF ++ N
Sbjct: 214 QQAARISDYTGFFLMGELIEFGQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 43/229 (18%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQD---- 199
I+G +GSGKSTL++ + R++EPT+G + IDG DI+++ +L R ++S++ Q
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 200 PTMFEGSVHNNLD-PLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252
P +V N+ LE +E EAL+ L K +L
Sbjct: 115 PHR---TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL---------- 161
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC------TVIT 306
S G +Q V LAR L +L++DEA +A D LI+ + T++
Sbjct: 162 -SGGMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLRLQAELQKTIVF 216
Query: 307 IAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354
I H + + D + ++ G + + +P +L N ++ + V E+ +
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY---VREFFR 262
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISSIGLHD--LRSRLSIIPQ 198
T I+G +G GKST ++ + R+ + P T G + DG DI + LR ++ ++ Q
Sbjct: 68 TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 199 DPTMFEGSVHNNL---DPLEEYAD----EEIWE-ALDKCQLGNEVRKNEGKLESRVTENG 250
P F S+ +N+ L D EEI E +L K L +EV R+ +N
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNA 180
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD---TAT-DNLIQHTLGQHFSDCTVIT 306
S GQ+Q +C+AR L + ++L+LDE T+++D TA ++LIQ G + T++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY----TIMI 236
Query: 307 IAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
+ H + SD + G++ E +L N
Sbjct: 237 VTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 1e-11
Identities = 50/202 (24%), Positives = 96/202 (47%), Gaps = 28/202 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--------IDISS 183
+L G++ T I+G +G GKST ++ L R+ E + ++G I
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERR 80
Query: 184 IGLHDLRSRLSIIPQDPTMFEGSVHNNL---------DPLEEYADEEIWEALDKCQLGNE 234
+ L+ LR ++S++ P +F SV++N+ P E D+ + AL L +E
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI-DDIVESALKDADLWDE 139
Query: 235 VRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 294
++ ++ ++ + S GQ+Q +C+AR L K KVL++DE +D ++
Sbjct: 140 IK-------HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESL 192
Query: 295 LGQHF--SDCTVITIAHRITSV 314
+ S+ T++ ++H + V
Sbjct: 193 IQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 1e-11
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 54/168 (32%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS-RLSI--IPQDPTMF 203
G++G +G+GKSTLI+ + + PT+G + +DG D++++ +LR R I I Q
Sbjct: 35 GVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQ----- 89
Query: 204 EGSVHNNL-------D----PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE- 251
H NL D PLE L + ++++RVTE E
Sbjct: 90 ----HFNLLSSRTVFDNVALPLE---------------LAG---TPKAEIKARVTELLEL 127
Query: 252 ------------NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
S GQ+Q V +AR L KVL+ DEAT+++D AT
Sbjct: 128 VGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
|
Length = 343 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 32/193 (16%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--ID-ISSIGLHDLRSRLSIIPQD 199
G +VG +GSGKST + L R+VE G I +G ID +S L LR + I QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 200 PTMFEGSVHNNLDPLEEYADEEIWEALDKCQL--GNEVRKNEGKLESRVTENGEN----- 252
P + +LDP + D I E L L G L RV E+
Sbjct: 410 P-------YASLDPRQTVGDS-IMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461
Query: 253 --WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD----NL---IQHTLGQHF---- 299
+S GQRQ +C+AR L KV++ DEA +++D + NL +Q G +
Sbjct: 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFIS 521
Query: 300 SDCTVIT-IAHRI 311
D V+ I+HR+
Sbjct: 522 HDMAVVERISHRV 534
|
Length = 623 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 2e-11
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 25/183 (13%)
Query: 146 TGIVGRTGSGKSTLIQTLFRI--VEPTA---GLIAIDGIDISSIGLH--DLRSRLSIIPQ 198
T I+G +G GKST+++++ R+ + P+A G I +D DI G+ +R R+ ++ Q
Sbjct: 33 TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQ 92
Query: 199 DPTMFEG-SVHNNLD---------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248
P F S+++N+ E ADE + +L + L +EV+ R+
Sbjct: 93 KPNPFPAMSIYDNVIAGYKLNGRVNRSE-ADEIVESSLKRVALWDEVK-------DRLKS 144
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIA 308
N S GQ+Q +C+AR + K +V+++DE +++D + I+ + + T+I +
Sbjct: 145 NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
Query: 309 HRI 311
H +
Sbjct: 205 HNM 207
|
Length = 252 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 25/180 (13%)
Query: 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178
G P VL ++ + G G++GR+G GKSTL + L + +P G ++ G
Sbjct: 14 TGGLFGAKQRAP-VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRG 72
Query: 179 IDISSI---GLHDLRSRLSIIPQD-PTMF--EGSVHNNL-DPLEEYAD-------EEIWE 224
D+ + R + ++ QD P+ +V + +PL I E
Sbjct: 73 QDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAE 132
Query: 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
LD L +E KL ++ S GQ Q + +AR L K K++VLDEA +++D
Sbjct: 133 LLDMVGLRSEDAD---KLPRQL-------SGGQLQRINIARALAVKPKLIVLDEAVSNLD 182
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 37/225 (16%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L G++ G I+G G+GKSTL++ L + P +G + ++G+ ++S +L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 192 RLSIIPQDPTM-FEGSV--------HNNLDPLEEYADEEIWE-ALDKCQLGNEVRKNEGK 241
+++PQ+ ++ F +V + E DE I AL L
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-------- 127
Query: 242 LESR-VTENGENWSMGQRQLVCLARVLLKKS------KVLVLDEATASVDTATDNLIQHT 294
L R S G++Q V LARVL + + L LDE T+++D A HT
Sbjct: 128 LAGRDYRT----LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ---HHT 180
Query: 295 LG--QHFSD--CTVITIAHRIT-SVIDSDMVLLLSYGLIEEFDSP 334
L + + V+ + H + + +D ++LL G + SP
Sbjct: 181 LRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+ L+ T G I G G+GK+TL++ L ++ P AG + G I ++ ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 192 RLSIIPQDPTMFEGSVHNNL----DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVT 247
L + Q E + NL IWEAL + L G+L
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQL----- 131
Query: 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298
S GQ++ V LAR+ L + + +LDE ++D L+ + H
Sbjct: 132 ------SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
|
Length = 209 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-11
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 27/151 (17%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS-RLSIIPQDPTMFEGS 206
I+G GSGKSTL + L ++EPT+G + ID + G + RS R+ +I QDP+
Sbjct: 44 IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIRMIFQDPS----- 97
Query: 207 VHNNLDPLEEYADEEIWEALD-----KCQLGNEVRKNE--------GKLESRVTENGENW 253
+L+P + I + LD L E R+ + G L +
Sbjct: 98 --TSLNP-----RQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHML 150
Query: 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ GQ+Q + LAR L+ + KV++ DEA AS+D
Sbjct: 151 APGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 4e-11
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 40/167 (23%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+LRG++ G T ++GR G GK+TL++TL ++ +G I +DG DI+ + H+ R+
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 192 RLSI--IPQD----PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGK---- 241
R I +PQ P + +V NL G +
Sbjct: 74 RAGIAYVPQGREIFPRL---TVEENL------------------LTGLAALPRRSRKIPD 112
Query: 242 --------LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280
L+ + G + S GQ+Q + +AR L+ + K+L+LDE T
Sbjct: 113 EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-11
Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 32/212 (15%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----A 171
I+G+ + Y H L+ + + T I+G +G GKST I+TL +++
Sbjct: 14 QINGMNLWYGQHH--ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT 71
Query: 172 GLIAIDGIDI--SSIGLHDLRSRLSIIPQDPTMFEGSVHNNL------------DPLEEY 217
G + +G +I + L +LR + ++ Q F S+ +N+ L+E
Sbjct: 72 GEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI 131
Query: 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277
++ +L L +EV+ R+ + S GQ+Q +C+AR L VL++D
Sbjct: 132 VEK----SLKDVALWDEVK-------DRLHTQALSLSGGQQQRLCIARALATNPDVLLMD 180
Query: 278 EATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
E T+++D + I+ + + T++ + H
Sbjct: 181 EPTSALDPVSTRKIEELILKLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-11
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 28/214 (13%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGLH 187
+L ++ G I+G +GSGK+TL+ + VE T+G I +G
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---D 77
Query: 188 DLRSRLSIIPQDPTMFEG---------SVHNNL-DPLEEYADEEIWEALDKCQLGNEVRK 237
+ ++ + QD + G + L + ++ E + L
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG 137
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
+ V + S G+R+ V +A LL KVL+LDE T+ +D+ T + TL Q
Sbjct: 138 G-----NLV----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQ 188
Query: 298 HF-SDCTVITIAHRITSVIDS--DMVLLLSYGLI 328
+ VI H+ S + D +LLLS G I
Sbjct: 189 LARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 5e-11
Identities = 53/214 (24%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192
L G++ + G I+G+ GSGKST + + + E G + IDG +++ + +LR +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 193 LSIIPQDP-TMFEG-SVHNNLDPLEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVT 247
+ ++ Q+P F G +V +++ E EE+ + +D+ L + + + +R+
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL- 141
Query: 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ---HTLGQHFSDCTV 304
S GQ+Q V +A ++ + ++++LDE+T+ +D I H + + + TV
Sbjct: 142 ------SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ-LTV 194
Query: 305 ITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 338
++I H + SD +L++ G I + +P+ L
Sbjct: 195 LSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 6e-11
Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 13/196 (6%)
Query: 146 TGIVGRTGSGKSTLIQTLFRI---VEPTA--GLIAIDGIDISS--IGLHDLRSRLSIIPQ 198
T +G +G GKST ++ L ++ +E T+ G I G + S I +LR+R+ ++ Q
Sbjct: 111 TAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQ 170
Query: 199 DPTMFEGSVHNNL--DPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255
PT FE S+ +N+ P D +I E + + L + +E ++ + + G S
Sbjct: 171 KPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE--VKDDLDKAGNALSG 228
Query: 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315
GQ+Q +C+AR + + +VL++DE T+++D I+ + + ++I + H +
Sbjct: 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQ 288
Query: 316 D-SDMVLLLSYGLIEE 330
SD + G IEE
Sbjct: 289 RISDETVFFYQGWIEE 304
|
Length = 329 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 6e-11
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 34/211 (16%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++ H + Y L ++ G + G +G+GK+TL++ L+ + P+ G +
Sbjct: 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 176 IDGIDISSIGLHD-----LRSRLSIIPQD----PTMFEGSVHNNLD-PLE-EYADEEIW- 223
I G D++ L LR R+ ++ QD P +V+ N+ PLE E
Sbjct: 61 IAGEDVNR--LRGRQLPLLRRRIGVVFQDFRLLPDR---TVYENVALPLEVRGKKEREIQ 115
Query: 224 ----EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279
AL Q+G LE + E S G++Q V +AR ++ +L+ DE
Sbjct: 116 RRVGAALR--QVG---------LEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 280 TASVDTATDNLIQHTLGQ-HFSDCTVITIAH 309
T ++D I L + + TVI H
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-11
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 42/237 (17%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHDLRSRLSIIPQDPT 201
T I GR+GSGK+TLI+ + + P G I ++G + I L + R+ + Q+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 202 MFEG-SVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252
+F SV NL + E + E L +G+ + + G+L
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRL---------- 132
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ---HTLGQHFSDCTVITIAH 309
S G++Q V + R LL ++L++DE A++D I L F ++ ++H
Sbjct: 133 -SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSH 190
Query: 310 RITSVID-SDMVLLLSYGLIEEFDSPTRLL----------ENKSSSFAQLVAEYTQR 355
+ V+ +D V++L G + + E++ S +VAE+ Q
Sbjct: 191 SLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVAEHDQH 247
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-11
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHD 188
VL+G++ + G IVG +GSGKSTL+ L + PT+G + +G +S +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 189 LRSR-LSIIPQ------DPTMFEGSVHNNLDPL------EEYADEEIWEALDKCQLGNEV 235
LR++ L I Q D T E N PL + A E +E L+K L + +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALE----NVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI 135
Query: 236 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
+L S G+RQ V +AR L+ + +++ DE T ++D +I
Sbjct: 136 NHRPSEL-----------SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII 180
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 9e-11
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 27/148 (18%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSV 207
I G +G GKSTL++ + ++ PT+G + +G DIS++ R ++S Q PT+F +V
Sbjct: 38 ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV 97
Query: 208 HNNL-----------DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256
++NL DP D L++ L + + L + E S G
Sbjct: 98 YDNLIFPWQIRNQQPDPAIFLDD------LERFALPDTI------LTKNIAE----LSGG 141
Query: 257 QRQLVCLARVLLKKSKVLVLDEATASVD 284
++Q + L R L KVL+LDE T+++D
Sbjct: 142 EKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-10
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 17/159 (10%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
VL ++ G G +G G+GK+T ++ + +++P +G I DG +
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALR 72
Query: 192 RLSIIPQDPTMF-EGSVHNNLDPLEEYA---DEEIWEALDKCQLGNEVRKNEGKLESRVT 247
R+ + + P + + NL L + I E LD L + +K
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF----- 127
Query: 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
S+G +Q + +A LL +L+LDE T +D
Sbjct: 128 ------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 30/229 (13%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192
L ++ G ++G +GSGK+TL++ + + P +G I G D + ++ R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD---VPVQER 74
Query: 193 -LSIIPQDPTMFEG-SVHNNL-----------DPLEEYADEEIWEALDKCQLGNEVRKNE 239
+ + Q +F +V +N+ P E ++ E L QL
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW------ 128
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299
L R S GQRQ V LAR L + KVL+LDE ++D ++ L +
Sbjct: 129 --LADRYPAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183
Query: 300 SDCTVITI--AHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345
+ V T+ H ++ +D V++++ G IE+ +P + ++ +S F
Sbjct: 184 DELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+ GL+ T G + G GSGK+TL++ L + P AG + ++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 192 RLSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
L + SV NL +++DE++ EAL + L + +L
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQL-------- 126
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298
S GQ++ V LAR+LL + +LDE T ++D A + H
Sbjct: 127 ---SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 26/207 (12%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192
L+GL+ + G KT ++G G+GKSTL+ L I P G + + G ++++ +RS+
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 193 LSIIPQDP-------TMFE----GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGK 241
+ ++ QDP T+++ G V+ LD E + + EAL ++ + K
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDE--VERRVEEALKAVRMWDFRDKPPYH 138
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL-GQHFS 300
L S GQ++ V +A VL V+VLDE A +D + L H
Sbjct: 139 L-----------SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187
Query: 301 DCTVITIAHRITSVID-SDMVLLLSYG 326
TVI H + + +D V++L G
Sbjct: 188 GKTVIVATHDVDLAAEWADQVIVLKEG 214
|
Length = 274 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--IDISSIGLH--DLRSRLSIIPQDPT 201
TGI G +G+GKSTL++ + + +P G I ++G + S ++ + ++ ++ Q
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85
Query: 202 MFEG-SVHNNLD-PLEEYADEEIW----EALDKCQLGNEVRKNEGKLESRVTENGENWSM 255
+F +V NL L+ + E E LD L + + + +L S
Sbjct: 86 LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQL-----------SG 134
Query: 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD--CTVITIAH 309
G++Q V LAR L + ++L+LDE +++D A + L Q + VI + H
Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 2e-10
Identities = 57/262 (21%), Positives = 109/262 (41%), Gaps = 40/262 (15%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TA 171
G + I L+V Y VL L+ G ++G++G GK+TL++ + V+
Sbjct: 4 GGIRIDHLRVAY--GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 172 GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-----EGSVHNNLDPLEEYA---DEEIW 223
G IAI D++ H + L+++ Q+ +F E +V L + E +
Sbjct: 62 GRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283
+AL LG+ +L S G +Q + +AR + + VL+LDE +++
Sbjct: 120 DALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 284 DTATDNLIQHT-------LGQHFSDCTVITIAH-RITSVIDSDMVLLLSYGLIEEFDSPT 335
D I+ L + + T++ + H + ++ +D ++ G + P
Sbjct: 169 DAN----IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQ 224
Query: 336 RLLENKSSSFAQLVAEYTQRSN 357
L + + F AE+ +N
Sbjct: 225 ALYDAPADGF---AAEFLGAAN 243
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 47/201 (23%), Positives = 102/201 (50%), Gaps = 21/201 (10%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDI--SSIG 185
++ + C G T ++G +G GKST++++L R+ + G + DG D+ +
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 186 LHDLRSRLSIIPQDPTMFEGSVHNNL------DPLEEYADEEIWEALDKCQLGNEVRKNE 239
++R R+ ++ Q P F S++ N+ + DE + +L K + +E +
Sbjct: 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK--- 145
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299
++ E+G + S GQ+Q +C+AR + + +V+++DE +++D + I+ T+ +
Sbjct: 146 ----DKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK 201
Query: 300 SDCTVITIAHRITSVID-SDM 319
+ T++ + H + + SDM
Sbjct: 202 KNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 50/227 (22%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIG---LHDLR-SRLSIIP 197
GIVG +GSGKS L + + ++ G I DG D+ S+ L +R +++I
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 198 QDP------------TMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRK-----NE 239
QDP + E +H ++ A E E L+ + + R+ +E
Sbjct: 95 QDPMTSLNPVMTIGDQIAEVLRLHGKGLS-KKEAKERAIELLELVGIPDPERRLKSYPHE 153
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD----NLIQHTL 295
S G RQ V +A L K+L+ DE T ++D +L++
Sbjct: 154 -------------LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL- 199
Query: 296 GQHFSDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSPTRLLEN 340
Q +I I H + V+ +D V ++ G I E + +N
Sbjct: 200 -QREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+D ++ RY L V+ GL+ G G++G G+GK+T ++ L + P AG I+
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 176 IDGIDISSIGLHDLRSRLSIIPQ----DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQL 231
+ G + S H R R+ ++PQ DP +V NL Y A
Sbjct: 66 LCGEPVPSRARH-ARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVPP 121
Query: 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
E K E K +++V E S G ++ + LAR L+ VLVLDE T +D +L+
Sbjct: 122 LLEFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
|
Length = 306 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190
L++ G+ T G TG++G GSGKSTL++ L + P AG + + G+D+ +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 191 SRLSIIPQD-PTMFEGSV----------HNNLDPLEEYADEEIWEALDKCQLGNEVRKNE 239
R++++ QD T +V H +L + D + +D+ E
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV---VDRALARTE----- 126
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
L + S G+RQ V +AR L ++ K+L+LDE T +D
Sbjct: 127 --LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-10
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 53/180 (29%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSV 207
I G +G+GKS+L FR + AGL IG+ + L +PQ P + G+
Sbjct: 32 ITGPSGTGKSSL----FRAL---AGLWPWGS---GRIGMPE-GEDLLFLPQRPYLPLGT- 79
Query: 208 HNNLDPLEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264
L E Y W + S G++Q + A
Sbjct: 80 ------LREQLIYP----W--------------------------DDVLSGGEQQRLAFA 103
Query: 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324
R+LL K K + LDEAT+++D +++ + L + TVI++ HR + D VL L
Sbjct: 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHRPSLWKFHDRVLDLD 161
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-10
Identities = 44/183 (24%), Positives = 88/183 (48%), Gaps = 20/183 (10%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTAGL-----IAIDGIDISSIGLHDL--RSRLSIIPQ 198
TG +G +G GKST++++L R+ + G + G D+ G+ + R + ++ Q
Sbjct: 37 TGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQ 96
Query: 199 DPTMFEGSVHNN------LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252
P F S+ +N L+ + + + AL L +EV+ ++ +G +
Sbjct: 97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLS 149
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312
S GQ+Q +C+AR + + +VL+LDE +++D ++ + + D T+ + H +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ 209
Query: 313 SVI 315
I
Sbjct: 210 QAI 212
|
Length = 261 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-10
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 23/193 (11%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L L+ TF G TG++G GSGKSTL++ L R P+ G I +D + S
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 192 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG- 250
+++ +PQ EG L + Y W LG + K+E ++ G
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYP----WHG----ALGRFGAADREKVEEAISLVGL 137
Query: 251 --------ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD----NLIQHTLGQH 298
++ S G+RQ +A ++ + S+ L+LDE T+++D A L+ +
Sbjct: 138 KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197
Query: 299 FSDCTVITIAHRI 311
TVI + H I
Sbjct: 198 --GLTVIAVLHDI 208
|
Length = 265 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 36/231 (15%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHD 188
+ + F G IVG+TGSGKSTLIQ + +++PT G + +D I I+ +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 189 LRSRLSIIPQDP--TMFEGSVHN-----------NLDPLEEYADEEIWEALDKCQLGNEV 235
+R R+ ++ Q P +FE +V NLD ++ YA + LG
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLL------MDLG--- 133
Query: 236 RKNEGKLESRVTENGE-NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 294
V S GQ + + + +L ++VLDE TA +D + +
Sbjct: 134 ------FSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL 187
Query: 295 LG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342
L Q + T+I ++H + V +D V+++ G I SP L ++K
Sbjct: 188 LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 5e-10
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 56/238 (23%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L ++ T G I+G G+GKSTL++ L + P +G + ++G ++ +L
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76
Query: 192 RLSIIPQDPTM-FEGSVHN----NLDPLEEYADEE---IWEALDKCQLGNEVRKNEGKLE 243
R +++PQ ++ F +V P E+ + AL + L L
Sbjct: 77 RRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL--------AHLA 128
Query: 244 SR-VTENGENWSMGQRQLVCLARVLL------KKSKVLVLDEATASVDTATDNLIQHTLG 296
R + S G++Q V LARVL + L+LDE T+++D + H
Sbjct: 129 GRDYPQ----LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD------LAH--- 175
Query: 297 QHFSDCTVITIAHRIT-----SVI----D-------SDMVLLLSYGLIEEFDSPTRLL 338
QH V+ +A ++ +VI D +D ++LL G + +P +L
Sbjct: 176 QH----HVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-10
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 23/185 (12%)
Query: 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174
EV V +L+G+ G IVG +GSGKSTL+ L + +P++G +
Sbjct: 8 EVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67
Query: 175 AIDGIDISSI---GLHDLRSR-LSIIPQD----PTMFEGSVHNNLDPLE---EYADEEIW 223
+ G + + LR+R + + Q P + ++ N PLE E + +
Sbjct: 68 RLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL--TALENVALPLELRGESSADSRA 125
Query: 224 EALDKC-QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282
A +G L R+T S G++Q V LAR + VL DE T +
Sbjct: 126 GAKALLEAVG---------LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGN 176
Query: 283 VDTAT 287
+D AT
Sbjct: 177 LDRAT 181
|
Length = 228 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 6e-10
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Query: 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189
P V R L TF T +G G+GK+T + L ++ PT+G + + G DI + L +
Sbjct: 944 PAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAV 1001
Query: 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
R L + PQ +F H + + + + ++ QL E + L + E
Sbjct: 1002 RQSLGMCPQHNILFH---HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE 1058
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
++ S G ++ + +A + +KV+VLDE T+ VD + I L ++ S T+I H
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
Query: 310 RITSV-IDSDMVLLLSYG 326
+ + D + ++S G
Sbjct: 1119 HMDEADLLGDRIAIISQG 1136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 7e-10
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 14/203 (6%)
Query: 125 YAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 184
++ ++ VL+ ++ G + G TGSGKS+L+ + +EP+ G I G
Sbjct: 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------ 487
Query: 185 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLES 244
R+S PQ + G++ +N+ Y + + CQL ++ K ++
Sbjct: 488 -------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKT 540
Query: 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI-QHTLGQHFSDCT 303
+ E G S GQR + LAR + K + + +LD +D T+ I + L + S+ T
Sbjct: 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600
Query: 304 VITIAHRITSVIDSDMVLLLSYG 326
I + ++ + +D +LLL G
Sbjct: 601 RILVTSKLEHLKKADKILLLHEG 623
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-10
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 18/204 (8%)
Query: 128 HLPL----VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183
+L L VL+ + G I G TGSGK++L+ + +EP+ G I G
Sbjct: 44 NLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----- 98
Query: 184 IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLE 243
R+S Q + G++ N+ Y + + CQL ++ K K
Sbjct: 99 --------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDN 150
Query: 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI-QHTLGQHFSDC 302
+ + E G S GQR + LAR + K + + +LD +D T+ I + + + ++
Sbjct: 151 TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANK 210
Query: 303 TVITIAHRITSVIDSDMVLLLSYG 326
T I + ++ + +D +L+L G
Sbjct: 211 TRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 7e-10
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 32/243 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--IDISSIGLHDL 189
VL+GL F TG+VG G GKSTL L ++ P G + G +D S GL L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 190 RSRLSIIPQDP------TMFEGSVHNNLDPLEEYADEEIWEALDKC-QLGNEVRKNEGKL 242
R +++ + QDP T + + +L L + EI +D+ L + +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFRHQPI 134
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN----LIQHTLGQH 298
+ S GQ++ V +A L+ +++ L+LDE TA +D A +I+ + Q
Sbjct: 135 QC--------LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ- 185
Query: 299 FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP------TRLLENKSSSFAQLVAE 351
VI +H I + + SD V +L G I +P T +E + LV
Sbjct: 186 --GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQPWLVKL 243
Query: 352 YTQ 354
+TQ
Sbjct: 244 HTQ 246
|
Length = 271 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-10
Identities = 66/272 (24%), Positives = 113/272 (41%), Gaps = 60/272 (22%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAG----------------- 172
VL+ ++ T G GI+GR+G+GKS L+ L EPT+G
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 173 ----------------LIAIDGIDISSIGLHDLRSRLSIIPQ-------DPTMFEGSVHN 209
+D ++S +R R++I+ Q D T+ + +V
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD-NVLE 133
Query: 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269
L+ + E + A+D L V +L R+T + S G++Q V LAR L K
Sbjct: 134 ALEEIGYEGKEAVGRAVD---LIEMV-----QLSHRITHIARDLSGGEKQRVVLARQLAK 185
Query: 270 KSKVLVLDEATASVDTATDNLIQHTL--GQHFSDCTVITIAHRITSVID--SDMVLLLSY 325
+ + + DE T ++D T L+ + L S +++ +H VI+ SD + L
Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVIEDLSDKAIWLEN 244
Query: 326 GLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
G I+E +P + + F + V+E +
Sbjct: 245 GEIKEEGTP----DEVVAVFMEGVSEVEKECE 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 8e-10
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 39/221 (17%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+ ++ G G++G G+GK+TL + +P++G + G DI+ + H +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 192 RLSIIP--QDPTMFEG-SVHNNL-------------------DPLEEYADEEIWEALDKC 229
RL I Q +F G +V N+ E A E E L+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV-DTATD 288
LG N S GQ++ + +AR L + K+L+LDE A + T+
Sbjct: 138 GLGE-----------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186
Query: 289 NLIQH--TLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326
L + L T++ I H + V+ +D +++L+YG
Sbjct: 187 ELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 8e-10
Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 31/199 (15%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL-----IAIDGIDISSIGLH 187
++ + G ++G +G GK+T ++ + R+ + T G I +DG DI +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 188 D--LRSRLSIIPQDPTMFEG-SVHNNL------------DPLEEYADEEIWEALDKCQLG 232
+R R+ ++ Q P F SV +N+ D L E A+ +L L
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAER----SLRGAALW 135
Query: 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292
+EV+ R+ S GQ+Q +C+AR L + ++L++DE T+++D A+ I+
Sbjct: 136 DEVK-------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE 188
Query: 293 HTLGQHFSDCTVITIAHRI 311
+ T+I + H +
Sbjct: 189 DLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 39/222 (17%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-S 206
++G +G GK+TL++ + PT+G I +DG DI+++ H + ++ + Q+ +F +
Sbjct: 31 LLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVNTVFQNYALFPHLT 88
Query: 207 VHNNLD-PL------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259
V N+ L + E + EALD QL + +L S GQ+Q
Sbjct: 89 VFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQL-----------SGGQQQ 137
Query: 260 LVCLARVLLKKSKVLVLDEATASVDTA--------TDNLIQHTLGQHFSDCTVITIAHRI 311
V +AR L+ + KVL+LDE ++D L Q LG T + + H
Sbjct: 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL-QKELG-----ITFVFVTHDQ 191
Query: 312 TSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352
+ SD + +++ G I++ +P + E ++ F VA++
Sbjct: 192 EEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRF---VADF 230
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 36/202 (17%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
VL ++ G ++G G+GKSTL++ + +V P G+I + +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 192 RLSIIPQ----DPTM-FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRV 246
R+ +PQ D T+ + L P + D I AL + Q G+ + KL
Sbjct: 68 RIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED--ILPALKRVQAGHLIDAPMQKL---- 121
Query: 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT----ATDNLIQHTLGQHFSDC 302
S G+ Q V LAR LL + ++LVLDE T VD A +LI + DC
Sbjct: 122 -------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL--RRELDC 172
Query: 303 TVITIAHRITSVI-DSDMVLLL 323
V+ ++H + V+ +D VL L
Sbjct: 173 AVLMVSHDLHLVMAKTDEVLCL 194
|
Length = 251 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 29/213 (13%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAG----LIAIDGIDISSIGLHDLRSR----LSIIPQ 198
GIVG +G+GK+TL + + ++EPT+G + + +D++ G D R R + I+ Q
Sbjct: 314 GIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGRGRAKRYIGILHQ 372
Query: 199 DPTMFEGSVHNN-LDPLEEYADEEIWEALDKCQLGNEVRK---NEGKLESRVTENGENWS 254
+ ++ H LD L E E+ + L + + ++ +E K E + + + S
Sbjct: 373 EYDLYP---HRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429
Query: 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT-------LGQHFSDCTVITI 307
G+R V LA+VL+K+ ++++LDE T ++D T + H+ + Q F I +
Sbjct: 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF-----IIV 484
Query: 308 AHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339
+H + V+D D L+ G I + P ++E
Sbjct: 485 SHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 40/186 (21%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--IDISSIGLHDLRSRLSIIPQDPTMFE 204
++G G+GKSTL++ LF + +P +G I +DG + I S +R + ++ Q +
Sbjct: 34 ALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPR-DAIRLGIGMVHQHFMLVP 92
Query: 205 GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK----NEGKLESRVTENGENW------- 253
L E LG E K + + +R+ E E +
Sbjct: 93 -----TLTVAENII------------LGLEPSKGGLIDRRQARARIKELSERYGLPVDPD 135
Query: 254 ------SMGQRQLVCLARVLLKKSKVLVLDEATASV-DTATDNLIQHTLGQ-HFSDCTVI 305
S+G++Q V + + L + +++L+LDE TA + D L + L + T+I
Sbjct: 136 AKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTII 194
Query: 306 TIAHRI 311
I H++
Sbjct: 195 FITHKL 200
|
Length = 501 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190
++ GL+ T G + G GSGK+TL++ + ++ P AG I +DG D I D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---IDDPDVA 72
Query: 191 SRLSII-PQDPTMFEGSVHNNLDPLEEY---ADEEIWEALDKCQLGNEVRKNEGKLESRV 246
+ ++ +V NL+ + + +I AL+ L +
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA------------PL 120
Query: 247 TE-NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD----NLIQHTLGQ 297
S GQ++ V LAR+L+ + +LDE TA++D A LI+ L Q
Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
|
Length = 207 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-09
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 111 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170
P ++ G++V Y L LV + +G +G GKSTL++ R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFLALV--DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 171 AGLIAIDG--------IDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL------DPLEE 216
G ++G I S I LR ++ ++ Q P F S++ N+ + +
Sbjct: 74 PG-AKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKG 132
Query: 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276
DE + ++L + + EV+ ++ E G S GQ+Q +C+AR + K VL++
Sbjct: 133 NLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLM 185
Query: 277 DEATASVDTATDNLIQHTLGQHFSDCTVITIAHRI 311
DE +++D + ++ + T+I + H +
Sbjct: 186 DEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-09
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 27/239 (11%)
Query: 111 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170
P+Q + +++ L Y + L+ + T ++G +G GKST ++ R+ +
Sbjct: 12 PTQQKSEVNKLNFYYGGYQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 171 AG-------LIAIDGIDISSIGLH--DLRSRLSIIPQDPTMFEGSVHNNLD--------P 213
G ++ D ++I S + ++R R+S++ Q P F S+ N+
Sbjct: 70 PGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVK 129
Query: 214 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273
+E + AL L +EV+ G L N S GQ+Q +C+AR L ++
Sbjct: 130 RRSILEERVENALRNAALWDEVKDRLGDL-------AFNLSGGQQQRLCIARALATDPEI 182
Query: 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331
L+ DE T+++D I+ + + T++ + H + SD + G + EF
Sbjct: 183 LLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241
|
Length = 265 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-09
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
V LT G T I+G G GKSTL++TL R++ P G + +DG I ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 192 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEI---WEALDKCQLGNEVRKNEGKLESRVTE 248
R+ ++ Q+ T L Y + + W D+ + ++ + +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT--GITHLADQ 139
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ + S GQRQ +A VL +++ +++LDE T +D
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 31/199 (15%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++ + Y L L+ L+ G + IVG G+GKSTL++ L + P +G +
Sbjct: 322 LEFENVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380
Query: 176 IDGIDISSIGLHDLRSRLSI--IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN 233
+ + I Q + LDP ++ EE+ E
Sbjct: 381 V-------------GETVKIGYFDQH--------RDELDP-DKTVLEELSEGFPD-GDEQ 417
Query: 234 EVRKNEGKL---ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 290
EVR G+ + S G++ + LA++LL+ +L+LDE T +D +
Sbjct: 418 EVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 291 IQHTLGQHFSDCTVITIAH 309
++ L + TV+ ++H
Sbjct: 478 LEEALLDF--EGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 41/158 (25%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR----SRLSIIPQDPTMF 203
I+G +GSGKSTL++ L R++EPT G I +DG DI+ + +LR ++S++ Q +
Sbjct: 59 IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118
Query: 204 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW---------- 253
H + L+ G EV+ K E E
Sbjct: 119 P---HRTV--------------LENVAFGLEVQ-GVPKAERE--ERALEALELVGLEGYA 158
Query: 254 -------SMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
S G +Q V LAR L +L++DEA +++D
Sbjct: 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 46/254 (18%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
D+H RY H VL+G++ G I+G +GSGKST ++ + + +P+AG I +
Sbjct: 11 DLHK---RYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65
Query: 177 DGIDI-------------SSIGLHDLRSRLSIIPQD------PTMFEGSVHNNLDPLEEY 217
+G +I L LR+RL ++ Q T+ E + + L
Sbjct: 66 NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125
Query: 218 ADEEIWEA---LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274
E I A L K + + L S GQ+Q V +AR L + +V+
Sbjct: 126 KAEAIERAEKYLAKVGIAEKADAYPAHL-----------SGGQQQRVAIARALAMEPEVM 174
Query: 275 VLDEATASVDTATDNLIQHTLG--QHFSD--CTVITIAHRITSVID-SDMVLLLSYGLIE 329
+ DE T+++D L+ L Q ++ T++ + H + D S V+ L G IE
Sbjct: 175 LFDEPTSALDP---ELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231
Query: 330 EFDSPTRLLENKSS 343
E P ++ N S
Sbjct: 232 EEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 25/155 (16%)
Query: 145 KT-GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI---SSIGLHDLRSRLSIIPQDP 200
KT +VG +G GKSTL + L I PT G + G D+ LR ++ I+ Q+P
Sbjct: 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP 101
Query: 201 TMFEGSVHNNLDP-------LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253
GS L+P LEE I +L + + K+ R E+ + +
Sbjct: 102 Y---GS----LNPRKKVGQILEE--PLLINTSLSAAERREKALAMMAKVGLR-PEHYDRY 151
Query: 254 ----SMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
S GQRQ + +AR L+ V+V DE +++D
Sbjct: 152 PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 27/221 (12%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ + R+ L ++ + G G++G G+GK+T I+ + I+ P +G +
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 176 IDGIDISSIGLHDLRSRLSIIPQD----PTMFEGSVHNNLDPLE----EYADEEIWEALD 227
DG + R+R+ +P++ P M L L+ E A I E L+
Sbjct: 59 FDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE 114
Query: 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD-TA 286
+ +L RV E S G +Q V ++ ++L+LDE + +D
Sbjct: 115 RLELSE-------YANKRV----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 287 TDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326
+ L + TVI H++ V + D VLLL+ G
Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 3e-09
Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 36/260 (13%)
Query: 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171
S+ ++++ L RY H VL+G++ G I+G +GSGKST ++ + + +P+
Sbjct: 2 SENKLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE 59
Query: 172 GLIAIDGIDISSI-------------GLHDLRSRLSIIPQD------PTMFEGSVHNNLD 212
G I ++G I+ + L LR+RL+++ Q T+ E + +
Sbjct: 60 GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 119
Query: 213 PL---EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269
L ++ A E + L K + + GK + S GQ+Q V +AR L
Sbjct: 120 VLGLSKQEARERAVKYLAKVGIDERAQ---GKYPVHL-------SGGQQQRVSIARALAM 169
Query: 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDC-TVITIAHRITSVID-SDMVLLLSYGL 327
+ +VL+ DE T+++D + + Q + T++ + H + S V+ L G
Sbjct: 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
Query: 328 IEEFDSPTRLLENKSSSFAQ 347
IEE +P +L N S Q
Sbjct: 230 IEEEGAPEQLFGNPQSPRLQ 249
|
Length = 257 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-09
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSV 207
++G GSGKSTL L + +P +G I +DG +S+ L D R S + D +F+
Sbjct: 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFD--- 410
Query: 208 HNNLDPLEEYADEEIWEA-LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266
L E A ++ E L + +L ++ N+G+ + S GQ++ + L
Sbjct: 411 --QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNL------KLSTGQKKRLALLLA 462
Query: 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC--TVITIAHRITSVIDSDMVLLLS 324
LL++ +LVLDE A D A L + T+ I+H I +D +L +
Sbjct: 463 LLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMR 522
Query: 325 YGLIEE 330
G + E
Sbjct: 523 NGQLSE 528
|
Length = 546 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-09
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 30/183 (16%)
Query: 146 TGIVGRTGSGKSTLIQTLFR---IVE--PTAGLIAIDGIDISSIGLH--DLRSRLSIIPQ 198
T +G +G GKSTL++ R +V+ G I +DG +I + +LR R+ ++ Q
Sbjct: 54 TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQ 113
Query: 199 DPTMFEGSVHNN------LDPLEE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
P F S++ N L + DE + +L L +EV+ R+ EN
Sbjct: 114 RPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENA 166
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD---TAT-DNLIQHTLGQHFSDCTVIT 306
S GQ+Q + +AR + + +VL+LDE T+++D T + LI L + T++
Sbjct: 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELI-TELKSKY---TIVI 222
Query: 307 IAH 309
+ H
Sbjct: 223 VTH 225
|
Length = 272 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-09
Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 27/241 (11%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHD 188
L + T G T +G TGSGKST++Q L + PT G + +D I+S +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 189 LRSRLSIIPQDP--TMFEGSVHNNL--DPLEEYADEEIWEALDKCQLGNEVRKNEGKLES 244
+R ++ ++ Q P +FE +V ++ P +E EAL + +L V G ES
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKL-ALV----GISES 137
Query: 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-TDNLIQHTLGQHFSDCT 303
+N S GQ + V +A +L + K+LVLDE TA +D L+ H S T
Sbjct: 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMT 197
Query: 304 VITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR------LLENKS------SSFAQLVA 350
++ + H + V + +D V +L G + P LE K + FAQ +A
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKQLGVPKITKFAQRLA 257
Query: 351 E 351
+
Sbjct: 258 D 258
|
Length = 280 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-09
Identities = 50/221 (22%), Positives = 106/221 (47%), Gaps = 36/221 (16%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVE--PTA---GLIAIDGIDI--SSIGLHDLRSRLSIIPQ 198
T +G +G GKST+++ R+ + P G + G ++ + ++R R+ ++ Q
Sbjct: 39 TAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQ 98
Query: 199 DPTMFEGSVHNNL------DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252
P F S+++N+ + + DE + +L + L +EV+ ++ ++G +
Sbjct: 99 KPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLS 151
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ---HTLGQHFSDCTVITIAH 309
S GQ+Q +C+AR + + +V+++DE +++D + I+ H L + + T+I + H
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY---TIIIVTH 208
Query: 310 RITSVID-SDMVLLLS---------YGLIEEFDSPTRLLEN 340
+ SDM + YG + EFD ++ +
Sbjct: 209 NMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS 249
|
Length = 264 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-09
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSV 207
++G GSGKSTL L + +P +G I +DG +++ D R S + D +F+
Sbjct: 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD--- 410
Query: 208 HNNLDPLEEYADEEIWEA-LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266
L P + A+ + E L++ ++ +++ +G++ + S GQ++ + L
Sbjct: 411 -QLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNL------KLSKGQKKRLALLLA 463
Query: 267 LLKKSKVLVLDEATASVD 284
L ++ +L+LDE A D
Sbjct: 464 LAEERDILLLDEWAADQD 481
|
Length = 547 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 58/250 (23%), Positives = 111/250 (44%), Gaps = 32/250 (12%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTA-- 171
+D+ L + Y + + T +G +G GKST+++TL R+ V P A
Sbjct: 5 IDVKDLNIYYGSFH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62
Query: 172 -GLIAIDGIDISSIGLH--DLRSRLSIIPQDPTMFEG-SVHNNL--------DPLEEYAD 219
G + +DG D+ G+ +R + ++ Q P F S+ +N+ ++ D
Sbjct: 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLD 122
Query: 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279
E + ++L L NEV+ R+ + G S GQ+Q +C+AR + + VL++DE
Sbjct: 123 ELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175
Query: 280 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY------GLIEEFD 332
+++D + I+ + + D T++ + H + SD + G + E D
Sbjct: 176 CSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235
Query: 333 SPTRLLENKS 342
++ N +
Sbjct: 236 DTEKIFSNPT 245
|
Length = 258 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 40/210 (19%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG- 205
G +G G+GK+T I+ L ++ PT+G + G D+ +R + I+PQ ++ E
Sbjct: 23 GFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDL 81
Query: 206 SVHNNL-----------DPLEEYADE-----EIWEALDKCQLGNEVRKNEGKLESRVTEN 249
+ NL D EE A+E E+ EA D+ V
Sbjct: 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR----------------PV--- 122
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI-QHTLGQHFSDCTVITIA 308
+S G R+ + +A L+ + VL LDE T +D T I + T++
Sbjct: 123 -GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 309 HRITSVID-SDMVLLLSYGLIEEFDSPTRL 337
H + D + ++ +G I +P L
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--IDISSIGLHDL 189
L+G+ G ++G G+GKSTL I++PT+G + I G I L ++
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 190 RSRLSIIPQDP--TMFEGSVHN-------NLDPLEEYADEEIWEALDKCQLGNEVRKNEG 240
R + I+ Q+P +F +V NL +E ++ + EAL + K
Sbjct: 77 RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH 136
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
L S GQ++ V +A +L K +++VLDE T+ +D
Sbjct: 137 HL-----------SGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
|
Length = 275 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 140 FLGGMKT--GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197
F+ + ++G G+GKSTL + I++PT+G + I G I+ + ++R + ++
Sbjct: 25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVF 84
Query: 198 QDP--TMFEGSVHN-------NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248
Q+P +F +V NL EE + AL LG E +L RV
Sbjct: 85 QNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALH--MLGLE------ELRDRVP- 135
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ S G+++ V +A V+ + +VLVLDE TA +D
Sbjct: 136 --HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-- 189
VL+G++ G IVG +GSGKSTL+ L + +PT+G + G D++++ L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 190 --RSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQ-----LGNEVRKNEGK 241
R I Q + + N++ YA E + L + Q LG
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLG--------- 133
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ---- 297
LE RV S GQ+Q V +AR L+ +V++ DE T ++D+ + + L Q
Sbjct: 134 LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193
Query: 298 -HFSDCTVITIAH 309
H TVI + H
Sbjct: 194 GH----TVIIVTH 202
|
Length = 648 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 22/165 (13%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 189
L+G+T G + G +G+GKSTL++ + I P+AG I G DI+ + + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 190 RSRLSIIPQD-PTMFEGSVHNNLD-PL------EEYADEEIWEALDKCQLGNEVRKNEGK 241
R ++ +I QD + + +V++N+ PL + + ALDK L ++ + +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
L S G++Q V +AR ++ K VL+ DE T ++D A
Sbjct: 138 L-----------SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA 171
|
Length = 222 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 78/330 (23%), Positives = 135/330 (40%), Gaps = 65/330 (19%)
Query: 27 MLSSI-IFVFSLFF-IISVPEGVVDPAIA----GLAVTFGLNLNMLQASLISKLCN---- 76
+L+SI + V + F + ++ G + PA A L L ML +LI++ N
Sbjct: 529 ILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFML-PNLITQAVNANVS 587
Query: 77 ---LENRIISVERILQYMCIPNEPPL-----VIEASRPNCSWPSQGEVDIHGLQVRYAPH 128
LE +++ ER+L PN PPL I SW S+ E
Sbjct: 588 LKRLEELLLAEERVLL----PN-PPLEPGLPAISIKNGYFSWDSKAERP----------- 631
Query: 129 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 188
L + G IVG TG GK++LI + + P + +
Sbjct: 632 ---TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------ 676
Query: 189 LRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248
+R ++ +PQ +F +V +N+ + E A+D L +++ G + + E
Sbjct: 677 IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGE 736
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC------ 302
G N S GQ+Q V +AR + S V + D+ +++D H Q F C
Sbjct: 737 RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA-------HVGRQVFDKCIKDELR 789
Query: 303 --TVITIAHRITSVIDSDMVLLLSYGLIEE 330
T + + +++ + D ++L+ G+I+E
Sbjct: 790 GKTRVLVTNQLHFLSQVDRIILVHEGMIKE 819
|
Length = 1622 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 19/190 (10%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG-IDISSIGLHDLRS 191
L L+ + G ++G G+GK+TL+ + P G + DG D++ + H +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR-IA 79
Query: 192 RLSIIP--QDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG-----KLE 243
R I Q PT+FE +V NL+ L D+ ++ +L E R+ + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA----TDNLIQHTLGQHF 299
S GQ+Q + + +L + K+L+LDE A + A T L++ G+H
Sbjct: 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKH- 197
Query: 300 SDCTVITIAH 309
+++ + H
Sbjct: 198 ---SILVVEH 204
|
Length = 249 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 26/209 (12%)
Query: 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDLRS 191
G+T G G+VG +G GKST + + +V+ T G +A G D+ + +RS
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 192 RLSIIPQD------PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVR---KNEGKL 242
+ +I QD P M G + +PL Y + L + ++ + V+ G L
Sbjct: 99 DIQMIFQDPLASLNPRMTIGEIIA--EPLRTYHPK-----LSRQEVKDRVKAMMLKVGLL 151
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD----NLIQHTLGQH 298
+ + +S GQ Q + +AR L+ + K+++ DE +++D + NL+Q Q
Sbjct: 152 PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL--QR 209
Query: 299 FSDCTVITIAHRITSVID-SDMVLLLSYG 326
++I IAH + V SD VL++ G
Sbjct: 210 EMGLSLIFIAHDLAVVKHISDRVLVMYLG 238
|
Length = 331 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHD 188
V++ ++ T G G+VG +GSGKST L R++ + G I DG + ++ L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 189 LRSRLSIIPQDPTMFEGSVHNNLDPLEEYAD--EEIWEALDKCQLGNEVRK--NEGKL-- 242
+R R+ ++ QDP S++ L+ L+ + L Q +V E L
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
E+R E +S GQRQ + +AR L+ K +++LDE T+S+D
Sbjct: 417 ETRHRYPAE-FSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 26/153 (16%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP----- 197
G G +G G+GKST ++ + + P +G + + G D+ +++ + +P
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQRNIGYLPEHNPL 86
Query: 198 ------QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251
++ F ++ L + + + E ++ L E K G+L
Sbjct: 87 YLDMYVREYLQFIAGIYGMKGQLLK---QRVEEMIELVGLRPEQHKKIGQL--------- 134
Query: 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
S G RQ V LA+ L+ KVL+LDE T +D
Sbjct: 135 --SKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 42/221 (19%)
Query: 130 PLVLRGLTCTFLG-------------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIA 175
PL+L ++ + G +VGR+G GKSTL++ L + P+AG L+A
Sbjct: 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLD-PLEEYADEEIWEALDKCQLGN 233
+ L + R ++ QD + V +N+ L+ + +AL +G
Sbjct: 72 ------GTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA--AVG- 122
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT----DN 289
L R E S GQ+Q V LAR L+ + +L+LDE ++D T +
Sbjct: 123 --------LADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD 174
Query: 290 LIQHTLGQH-FSDCTVITIAHRIT-SVIDSDMVLLLSYGLI 328
LI+ QH F TV+ + H ++ +V +D VLL+ G I
Sbjct: 175 LIESLWQQHGF---TVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192
+RG++ G G++G G+GK+T I+ L +++PT+G + G D+ ++R R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74
Query: 193 LSIIPQDPTMFEG-------SVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLES 244
+ I+ QD ++ + +H L + E I E LD L E K
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVK--- 130
Query: 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
+S G R+ + +AR L+ + +VL LDE T +D T
Sbjct: 131 -------TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-08
Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 28/199 (14%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202
G I+G +G+GKSTL+ + +EP +G I ++ + GL + +S++ Q+ +
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT--GLAPYQRPVSMLFQENNL 81
Query: 203 FEG-SVHNN----LDP---LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254
F +V N L P L E++ +A + + + + + +L S
Sbjct: 82 FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQL-----------S 130
Query: 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN----LIQHTLGQHFSDCTVITIAHR 310
GQRQ V LAR L++ + +L+LDE +++D L++ + T++ + H
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER--QRTLLMVTHH 188
Query: 311 ITSVIDS-DMVLLLSYGLI 328
++ + ++S G I
Sbjct: 189 LSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-08
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 23/150 (15%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL--SIIPQDPTMFEG 205
++G G+GKSTL++ L I EPT G I I+ I+ + + H L ++L II Q E
Sbjct: 36 LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGIGIIYQ-----EL 89
Query: 206 SVHNNLDPLEEYADEEIWEALDKCQLG------NEVRKNEGKLESRV------TENGENW 253
SV + L LE I L K G E+R + RV E N
Sbjct: 90 SVIDELTVLENLY---IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANL 146
Query: 254 SMGQRQLVCLARVLLKKSKVLVLDEATASV 283
S+ +Q++ +A+ L+ +KV+++DE T+S+
Sbjct: 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 28/228 (12%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
L ++ T G ++G +G GK+TL+ + V P+ G I ++G I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74
Query: 192 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251
++ Q+ + L+ ++ A ++K Q + + E+
Sbjct: 75 ERGVVFQNEALLPW-----LNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY 129
Query: 252 NW--SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL-----GQHFSDCTV 304
W S G RQ V +AR L + ++L+LDE ++D T +Q L V
Sbjct: 130 IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ---V 186
Query: 305 ITIAHRI-TSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351
+ I H I ++ + +++LS G P R++E FA+ A
Sbjct: 187 LLITHDIEEALFLATRLVVLSPG-------PGRVVERLPLDFARRYAA 227
|
Length = 259 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 35/185 (18%)
Query: 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178
HG H VL ++ + G ++GR+G GKSTL + L + P+ G ++ G
Sbjct: 15 HGGLSGKHQHQT-VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG 73
Query: 179 IDISSI---GLHDLRSRLSIIPQDPTMFEGSVH----------------NNLDPLEEYAD 219
++ + R + ++ QD +V+ +LD E A
Sbjct: 74 EPLAKLNRAQRKAFRRDIQMVFQDSI---SAVNPRKTVREIIREPLRHLLSLDKAERLA- 129
Query: 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279
E L L + V K ++ S GQ Q VCLAR L + K+L+LDEA
Sbjct: 130 -RASEMLRAVDLDDSVLD---KRPPQL-------SGGQLQRVCLARALAVEPKLLILDEA 178
Query: 280 TASVD 284
+++D
Sbjct: 179 VSNLD 183
|
Length = 268 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 38/178 (21%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI----DGIDISSIGLH 187
VL+ ++ T G + G +G+GKSTL+++L+ P +G I + +D++
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 188 D---LRSR--------LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVR 236
+ +R + L +IP+ L+ + E E R
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSA---------LEVVAEPLLERGVPR-------EAAR 126
Query: 237 KNEGKLESRVTENGENWSM-------GQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
+L +R+ W + G++Q V +AR + +L+LDE TAS+D A
Sbjct: 127 ARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 25/172 (14%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG---IDISSIGLHD 188
VL+G+ T G ++G G+GKSTL++ + IV P +G + I G ++ H
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
Query: 189 LRSRLSIIPQDPTMFEG-SVHNNLD---PLEEYADEEIWEALDK--CQLGNEVRKNEGKL 242
L + ++PQ+P +F SV N+ P + + +++ + L CQL + + G L
Sbjct: 86 LG--IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS--SAGSL 141
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-TDNLIQH 293
E + RQ+V + R L++ S++L+LDE TAS+ A T+ L
Sbjct: 142 E-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR 182
|
Length = 510 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 44/253 (17%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
V + R+ VL GL + G K ++G +GSGKST+++ L + G I
Sbjct: 1 VRFSDVTKRFGILT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 176 IDG-------------IDISSIGLHDLRSRLSIIPQDPTMF----------EGSVHNNLD 212
++G + L +R+++ ++ Q +F E V
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM 118
Query: 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272
E A++ E LD L ++ +L S GQ+Q V +AR L + K
Sbjct: 119 ARAE-AEKRAMELLDMVGLADKADHMPAQL-----------SGGQQQRVAIARALAMRPK 166
Query: 273 VLVLDEATASVDTA----TDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL 327
V++ DE T+++D N+I+ +H D T++ + H + + +D V G
Sbjct: 167 VMLFDEVTSALDPELVGEVLNVIRRLASEH--DLTMLLVTHEMGFAREFADRVCFFDKGR 224
Query: 328 IEEFDSPTRLLEN 340
I E P +
Sbjct: 225 IVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 57/216 (26%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L+ ++ +F G K G++G G+GKSTL+ RI + G+D G +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLL----RI---------MAGVDKEFNG----EA 62
Query: 192 RLS------IIPQDP------TMFE------GSVHNNLDPLEE----YADE--------- 220
R + +PQ+P T+ E + + LD E +A+
Sbjct: 63 RPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLA 122
Query: 221 ---EIWEALDKCQLGNEVRKNEGKLES-RVTENG---ENWSMGQRQLVCLARVLLKKSKV 273
E+ E +D + RK E +++ R S G+R+ V L R+LL K +
Sbjct: 123 EQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDM 182
Query: 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
L+LDE T +D + ++ L Q + TV+ + H
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHL-QEYPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192
LR + T GG +VG GSGKSTL + L V +G I+I G L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----LQKN 78
Query: 193 L-SIIPQD-------PTMFEGSV------HNNLDPLEEYADEEIW-EALDKCQLGNEVRK 237
L + +PQ P + E V H + D +I AL + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDM------ 132
Query: 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
+E R + GE S GQ++ V LAR + ++ +V++LDE VD T+ I L +
Sbjct: 133 ----VEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187
Query: 298 HFSD-CTVITIAHRITSV 314
+ T++ H + SV
Sbjct: 188 LRDEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
V+ GL+ T G G++G G+GKST+ + + + P AG I + G+ + + R+
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARA 114
Query: 192 RLSIIPQ-DPTMFEGSVHNNLDPLEEY---ADEEIWEALDKCQLGNEVRKNEGKLESRVT 247
R+ ++PQ D E +V NL Y + EI EA+ L E + E K ++RV+
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREI-EAVIPSLL--EFARLESKADARVS 171
Query: 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
+ S G ++ + LAR L+ ++L+LDE T +D +LI
Sbjct: 172 D----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211
|
Length = 340 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190
+VL ++ G T I+G G+GKSTL+ + R+++ +G I IDG++++S +L
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 191 SRLSIIPQ-----------DPTMFEGSVHNNLDPLEEYADEE-IWEALDKCQLGNEVRKN 238
+LSI+ Q D F ++ +E D I EA++ L +
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKE--DRRIINEAIEYLHLED----- 127
Query: 239 EGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278
L R + S GQRQ +A VL + + ++LDE
Sbjct: 128 ---LSDR---YLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161
|
Length = 252 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 37/221 (16%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD----------------LRS 191
I+G +GSGKSTL+ +++ G I + I I + LR
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116
Query: 192 RLSIIPQDP--TMFEGSVHN-------NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKL 242
R+S++ Q P +F+ ++ L + A + L+K L
Sbjct: 117 RVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD---------- 166
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN-LIQHTLGQHFSD 301
+S + + S GQ++ V +A +L + ++L+ DE TA +D ++ ++Q L ++
Sbjct: 167 DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN 226
Query: 302 CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341
TV I H + V++ +D V+++ G I + +P + ++
Sbjct: 227 KTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 23/155 (14%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGS 206
++G +G GKSTL++ L +PTAG I +DG+D+S + + + ++++ Q +F +
Sbjct: 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY--QRPINMMFQSYALFPHMT 107
Query: 207 VHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258
V N+ P E A + E L + ++ +L S GQR
Sbjct: 108 VEQNIAFGLKQDKLPKAEIASR-VNEMLGLVHMQEFAKRKPHQL-----------SGGQR 155
Query: 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
Q V LAR L K+ K+L+LDE ++D + +Q
Sbjct: 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQL 190
|
Length = 377 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 39/222 (17%)
Query: 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI--SSIGLHDLRSRLSIIPQD 199
G M T ++G +G GK+T+++ + + +PT G I IDG D+ SI D+ ++ Q
Sbjct: 32 GTMVT-LLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI----CMVFQS 86
Query: 200 PTMF-EGSVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
+F S+ N+ P EE + + EAL+ L E R +
Sbjct: 87 YALFPHMSLGENVGYGLKMLGVPKEERK-QRVKEALELVDLAG--------FEDRYVDQ- 136
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ------HTLGQHFSDCTV 304
S GQ+Q V LAR L+ K KVL+ DE +++D NL + L Q F + T
Sbjct: 137 --ISGGQQQRVALARALILKPKVLLFDEPLSNLDA---NLRRSMREKIRELQQQF-NITS 190
Query: 305 ITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345
+ + H + SD V++++ G I + SP L +S F
Sbjct: 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 39/148 (26%), Positives = 78/148 (52%), Gaps = 27/148 (18%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD----PTMF 203
++G +G GK+T ++ + + EPT+G I I G D++ + D R ++++ Q+ P M
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-RD-IAMVFQNYALYPHM- 87
Query: 204 EGSVHNNLD-PL------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256
+V++N+ L ++ DE + E + Q+ + + + +L S G
Sbjct: 88 --TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQL-----------SGG 134
Query: 257 QRQLVCLARVLLKKSKVLVLDEATASVD 284
QRQ V L R ++++ KV ++DE +++D
Sbjct: 135 QRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 21/151 (13%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRLSIIPQDPTMFEGS 206
IVG G+GK+TL+ L P++G + + G +LR R+ ++
Sbjct: 62 IVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV-------SSE 114
Query: 207 VHNNLDPLEE---------YADEEIWEA-LDKCQLG--NEVRKNEGKLESRVTENGENWS 254
+H E +A I++ L L + + G + + S
Sbjct: 115 LHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLG-AKHLADRPFGSLS 173
Query: 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDT 285
G+++ V +AR L+K ++L+LDE +D
Sbjct: 174 QGEQRRVLIARALVKDPELLILDEPAQGLDL 204
|
Length = 257 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 7e-07
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI---DISSIGLHD 188
VL ++ + G IVG +GSGKSTL+ L + PT+G + +G +SS +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 189 LRSR-LSIIPQ------DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGK 241
LR++ L I Q D T E N PL ++ E + E+ G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALE----NVAMPL-LIGKKKPAEINSRAL---EMLAAVG- 134
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
LE R S G+RQ V +AR L+ ++++ DE T ++D + I LG+
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190
|
Length = 233 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 36/250 (14%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGL---TCTFLGGMKTGIVGRTGSGKSTLIQ-TLFRIVEP 169
++ + + YA P + L + TF T ++G TGSGKST+IQ T I+
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 170 TAGLIAID---GIDISSIG-LHDLRSRLSIIPQDP--TMFEGSVHN-------NLDPLEE 216
T I D ++ I + LR + ++ Q P +F+ ++ NL ++
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 217 YADEEIWEALDKCQLGNE-VRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275
A +++ E L QL + V+++ +L S GQ++ V LA ++ LV
Sbjct: 125 EAYKKVPELLKLVQLPEDYVKRSPFEL-----------SGGQKRRVALAGIIAMDGNTLV 173
Query: 276 LDEATASVDTATD----NLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330
LDE T +D + NL + L + + +I + H + V+ +D V+++ G +
Sbjct: 174 LDEPTGGLDPKGEEDFINLFER-LNKEYKK-RIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
Query: 331 FDSPTRLLEN 340
SP + N
Sbjct: 232 IGSPFEIFSN 241
|
Length = 289 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI-----GL 186
L+ ++ G + G++GR G+GKSTL++ L I P +G + + G +SS+ G
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RVSSLLGLGGGF 95
Query: 187 H-DLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESR 245
+ +L R + G + + DE+I E ++ +LG+ ++
Sbjct: 96 NPELTGR------ENIYLNGRLLGLSR---KEIDEKIDEIIEFSELGD-------FIDLP 139
Query: 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC-TV 304
V + +S G + + A + +L++DE A D A Q L + TV
Sbjct: 140 V----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV 195
Query: 305 ITIAHRITSVID-SDMVLLLSYGLIEEFD 332
I ++H +S+ D L+L G I
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD------- 199
G++G G+GK+TL++ + ++ P G + + G H + +PQ
Sbjct: 10 GLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHEFAWDF 64
Query: 200 PTMFEGSVHNN----LDPLEE--YAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252
P +V + + L AD + +AL + L + G+L
Sbjct: 65 PISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGEL---------- 114
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC-----TVITI 307
S GQRQ V +AR L + VL+LDE +D T Q L + F + ++
Sbjct: 115 -SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT----QELLTELFIELAGAGTAILMT 169
Query: 308 AHRITSVIDS-DMVLLLS 324
H + + + D V+LL+
Sbjct: 170 THDLAQAMATCDRVVLLN 187
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 184
L+ ++ G + GI+G G+GKSTL++ + I +PT+G + + G ++ +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAPL 93
|
Length = 249 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202
G I G G GKS+L + L + G + + +L +PQ P M
Sbjct: 478 GNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYM 526
Query: 203 FEGSVHNNL---DPLEE-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254
G++ + + D E+ +D+++ + LD QL + + + G S V + + S
Sbjct: 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGW--SAVQDWMDVLS 584
Query: 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC-----TVITIAH 309
G++Q + +AR+ K + +LDE T++V + + + C T+ +++H
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYM-------YRLCREFGITLFSVSH 637
Query: 310 R 310
R
Sbjct: 638 R 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 29/207 (14%)
Query: 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192
L+G+ T G ++G +G GKSTL+ + + +PT+G + ++G I+ G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 193 LSIIPQDPTMFEG-SVHNNL---------DPLEEYADEEIWEALDKCQLGNEVRKNEGKL 242
++ Q+ ++ +V N+ D + + E + L K G+L
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD- 301
S G +Q V +AR L + KVL+LDE ++D T +Q L Q + +
Sbjct: 116 -----------SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164
Query: 302 -CTVITIAHRI-TSVIDSDMVLLLSYG 326
TV+ + H + +++ SD V++L+ G
Sbjct: 165 RVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190
+V+ L+ T G G++G G+GKST+ + L ++ P G I + G + S R
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLAR 76
Query: 191 SRLSIIPQ-DPTMFEGSVHNNLDPLEEY---ADEEIWEALDKCQLGNEVRKNEGKLESRV 246
+ ++PQ D E +V NL Y + EI + E + E K + RV
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADVRV 133
Query: 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295
S G ++ + LAR L+ ++L+LDE T +D +LI L
Sbjct: 134 AL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 178
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 27/142 (19%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM-FEG 205
GI+G G GK+T I+ L +++P G I I+ +S PQ +EG
Sbjct: 29 GILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS------------YKPQYIKADYEG 76
Query: 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKN---EGKLESRVTENGENWSMGQRQLVC 262
+V + + E+ K E L+ V E S G+ Q V
Sbjct: 77 TV-------RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPE----LSGGELQRVA 125
Query: 263 LARVLLKKSKVLVLDEATASVD 284
+A L K + + +LDE +A +D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-06
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 26/199 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----- 186
L L+ TFL T I G G GKS+L++ + I++P++G I +I++I
Sbjct: 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74
Query: 187 --HDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLES 244
H+L +L + + F ++N+ E ++ A+ + KL
Sbjct: 75 IGHNLGLKLEMTVFENLKFWSEIYNSA--------ETLYAAI-----------HYFKLHD 115
Query: 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTV 304
+ E + S G +++V +AR++ +S + +LDE ++ +L+ + + + +
Sbjct: 116 LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGI 175
Query: 305 ITIAHRITSVIDSDMVLLL 323
+ ++ + S I S +L L
Sbjct: 176 VLLSSHLESSIKSAQILQL 194
|
Length = 195 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 7e-06
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 25/177 (14%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190
++ GL+ T G I G G+GK++L++ L + P AG + G I +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74
Query: 191 SRLSI-----IPQDPTMFEGSVHNNLD---PLEEYADEE-IWEALDKCQLGNEVRKNEGK 241
L + I + T E NL L D+E +WEAL + L G
Sbjct: 75 DLLYLGHQPGIKTELTALE-----NLRFYQRLHGPGDDEALWEALAQVGLA-------GF 122
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298
+ V S GQ++ V LAR+ L ++ + +LDE ++D ++ L QH
Sbjct: 123 EDVPV----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175
|
Length = 204 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 62/229 (27%), Positives = 90/229 (39%), Gaps = 31/229 (13%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202
G G +G G+GKST ++ L ++ PT+G + ++G D R + +
Sbjct: 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG--------KDPFRRREEYLRSIGL 101
Query: 203 FEGS------VHNNLDPLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
G LD LE E D+E E LD E+ EG L+ V
Sbjct: 102 VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFL---TEILDLEGFLKWPV---- 154
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIA 308
S+GQR LA LL KVL LDE T +D I+ L ++ TV+
Sbjct: 155 RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTT 214
Query: 309 HRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRS 356
H + D VLL+ G + FD L+ + + + E Q
Sbjct: 215 HIFDDIATLCDRVLLIDQGQL-VFDGTLAQLQEQFGPYKEFSVELKQAK 262
|
Length = 325 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 8e-06
Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 12/198 (6%)
Query: 94 PNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAP-----HLPLVLRGLTCTFLGGMKTGI 148
P + +A + I V P L + G I
Sbjct: 314 PEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFI 373
Query: 149 VGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 208
VG G GKSTL + + P G I +DG +S+ D R S I D +F+ +
Sbjct: 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG 433
Query: 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268
D E + + + L + ++ ++V+ +G S T S GQ++ + L L
Sbjct: 434 P--DEGEHASLDNAQQYLQRLEIADKVKIEDGGF-STTTA----LSTGQQKRLALICAWL 486
Query: 269 KKSKVLVLDEATASVDTA 286
+ +L+ DE A D A
Sbjct: 487 EDRPILLFDEWAADQDPA 504
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 23/149 (15%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204
++G +G GKSTL+ + + G + ++ + + + ++ I+ QD +F
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQDALLFP 90
Query: 205 G-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG------ENWSMGQ 257
SV NL AL GN R R +G S GQ
Sbjct: 91 HLSVGQNL-----------LFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQ 139
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVDTA 286
R V L R LL + K L+LDE + +D A
Sbjct: 140 RARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGLIAIDGIDISSIGLHDL 189
+L+G+ T G ++G GSGKSTL +T+ E T G I G DI+ + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE- 73
Query: 190 RSRLSII--PQDPTMFEG 205
R+RL I Q P G
Sbjct: 74 RARLGIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 30/171 (17%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS---SIG--- 185
VL G+ G I+G +GSGK+TL++ + + +P AG I + I I S+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 186 --LHDLRSRLSIIPQDPTMF----------EGSVHNNLDPLEEYADEEIWEALDKCQLGN 233
+ LR + + Q+ +F EG V +P EE A E L K L
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE-ATARARELLAKVGLAG 136
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ E R+ S GQ+Q V +AR L + +V++ DE T+++D
Sbjct: 137 K----ETSYPRRL-------SGGQQQRVAIARALAMRPEVILFDEPTSALD 176
|
Length = 250 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 1e-05
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 41/154 (26%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRLSIIPQDPTMFEG 205
GI G G+G++ L + LF + P +G I +DG ++ D +R+ ++ +P+D
Sbjct: 30 GIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPED------ 83
Query: 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG-KLESRVTEN---GENWSMGQRQLV 261
RK EG L+ V EN S G +Q V
Sbjct: 84 ------------------------------RKREGLVLDLSVAENIALSSLLSGGNQQKV 113
Query: 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295
LAR L + +VL+LDE T VD I +
Sbjct: 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI 147
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 28/215 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGLIAIDGIDISSIGLHDL 189
+L+G+ T G I+G GSGKSTL T+ E T G I DG DI + +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE- 77
Query: 190 RSRLSIIP--QDPTMFEG-SVHNNL----------DPLEEYADEEIWEALDKCQLGNEVR 236
R+R I Q P G + + L + +E+ E + +
Sbjct: 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAEL------LG 131
Query: 237 KNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG 296
+E LE V E +S G+++ + ++LL + K+ +LDE + +D ++ +
Sbjct: 132 LDEEFLERYV---NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188
Query: 297 Q-HFSDCTVITIAH--RITSVIDSDMVLLLSYGLI 328
V+ I H R+ I D V +L G I
Sbjct: 189 ALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRI 223
|
Length = 251 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 64/231 (27%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI-------------DISSIGLHDLRS-R 192
GIVG +GSGKS QT F ++ GL+A +G ++ L+ LR+ +
Sbjct: 46 GIVGESGSGKS---QTAFALM----GLLAANGRIGGSATFNGREILNLPEKELNKLRAEQ 98
Query: 193 LSIIPQDPT------MFEGS-------VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNE 239
+S+I QDP M G +H + E + EE LD ++ E RK
Sbjct: 99 ISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAF--EESVRMLDAVKM-PEARK-- 153
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ------- 292
R+ +S G RQ V +A LL + K+L+ DE T TA D +Q
Sbjct: 154 -----RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT----TALDVTVQAQIMTLL 204
Query: 293 HTLGQHFSDCTVITIAHRITSVIDS-DMVLL------LSYGLIEE-FDSPT 335
+ L + F + +I I H + V D VL+ + YG + F P+
Sbjct: 205 NELKREF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPS 254
|
Length = 330 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 32/202 (15%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP-------- 197
T + G +GSGK++LI + + P G I ++G L D + + P
Sbjct: 27 TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV-----LVDAEKGIFLPPEKRRIGYV 81
Query: 198 -QDPTMFEG-SVHNNLDPLEEYAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254
QD +F +V NL + + + + + + + + G L S
Sbjct: 82 FQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTL-----------S 130
Query: 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTAT-DNLIQH--TLGQHFSDCTVITIAHRI 311
G++Q V + R LL ++L++DE AS+D ++ + L + ++ ++H +
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSL 189
Query: 312 TSVID-SDMVLLLSYGLIEEFD 332
V+ +D V++L G ++
Sbjct: 190 DEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 31/192 (16%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDL-RSRLSIIPQDPTM 202
+ G G+GKSTL++ L V P G I +G ++ + + D R+ ++II Q+ +
Sbjct: 35 SLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL 93
Query: 203 FEG-SVHNNLDPLEEYADEEI-------WEAL-DKCQ-LGNEVRKNEGKLESRVTENGEN 252
+ SV N+ + EI ++A+ + Q L ++ KL+ N
Sbjct: 94 VKELSVLENI-----FLGNEITPGGIMDYDAMYLRAQKLLAQL-----KLDINPATPVGN 143
Query: 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASV---DTATDNLIQHTLGQHFSDCTVITIAH 309
+GQ+QLV +A+ L K++++L+LDE TAS+ +TA I L H C I I+H
Sbjct: 144 LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIAC--IYISH 201
Query: 310 RITSVID-SDMV 320
++ V SD +
Sbjct: 202 KLNEVKAISDTI 213
|
Length = 506 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRLSIIPQDPTMFEG- 205
++G G+GK+TL+ TL T+G I DG DI+ +R ++I+P+ +F
Sbjct: 36 LIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95
Query: 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265
+V NL +A+ + ++ + V + +L R + S G++Q++ + R
Sbjct: 96 TVEENLAMGGFFAERDQFQ-----ERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150
Query: 266 VLLKKSKVLVLDE 278
L+ + ++L+LDE
Sbjct: 151 ALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 43/215 (20%)
Query: 131 LVLRGLTCTFLGGMKT--------------GIVGRTGSGKSTLIQTLFRIVE--PTAGLI 174
L ++G+ TF GG+K G+ G G+GKSTL++ L + G I
Sbjct: 2 LEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 175 AIDGIDISSIGLHDL-RSRLSIIPQDPTMF-EGSVHNNLDPLEEYADEEIW--------- 223
G + + + D R+ + II Q+ T+ E SV N+ + EI
Sbjct: 61 YWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENI-----FLGNEITLPGGRMAYN 115
Query: 224 EALDKCQ-LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282
+ + L E++ + + V + G GQ+QLV +A+ L K++++L+LDE ++S
Sbjct: 116 AMYLRAKNLLRELQLDADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSS 171
Query: 283 VDTA-TDNL--IQHTLGQHFSDCTVITIAHRITSV 314
+ T+ L I L H C + I+H++ V
Sbjct: 172 LTEKETEILLDIIRDLKAHGVAC--VYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 4e-05
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 69/222 (31%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L+ ++ +F G K G++G G+GKSTL+ RI +A G+D G +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLL----RI-------MA--GVDKEFEG----EA 64
Query: 192 RLS------IIPQDP------TMFE------GSVHNNLDPLEE----YAD---------- 219
R + +PQ+P T+ E V LD E YA+
Sbjct: 65 RPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAA 124
Query: 220 -----EEIWEALDKCQLGNEV-------RKNEGKLESRVTENGENWSMGQRQLVCLARVL 267
+EI +A D L +++ R +++VT S G+R+ V L R+L
Sbjct: 125 EQGELQEIIDAADAWDLDSQLEIAMDALRCPPW--DAKVT----KLSGGERRRVALCRLL 178
Query: 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
L+K +L+LDE T +D + ++ L + TV+ + H
Sbjct: 179 LEKPDMLLLDEPTNHLDAESVAWLEQFL-HDYPG-TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 43/229 (18%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSRLSIIPQDPTMF-- 203
++G +G GK+TL++ + + TAG I G DI+ D I+ Q +F
Sbjct: 35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY----GIVFQSYALFPN 90
Query: 204 -------EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256
+ N E E + E LD L RK G+L S G
Sbjct: 91 LTVADNIAYGLKNRGMGRAE-VAERVAELLDLVGLPGSERKYPGQL-----------SGG 138
Query: 257 QRQLVCLARVLLKKSKVLVLDEATASVDTAT-DNL------IQHTLGQHFSDCTVITIAH 309
Q+Q V LAR L +L+LDE +++D ++L +Q LG T I + H
Sbjct: 139 QQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG-----VTTIMVTH 193
Query: 310 -RITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
+ ++ +D ++++++G+IE+ +P + + ++ F VA++ N
Sbjct: 194 DQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF---VADFVGEVN 239
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 37/223 (16%)
Query: 125 YAPHLPL---VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI------- 174
+ LP L ++ G I+G+TGSGK+T I+ L ++ P G I
Sbjct: 12 FNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE 71
Query: 175 ----AIDGIDISSIGL-------------HDLRSRLSIIPQ--DPTMFEGSVHNNL--DP 213
+ L ++R R+ ++ Q + +FE ++ ++ P
Sbjct: 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP 131
Query: 214 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273
+ +E EA + + + G ES + + S GQ++ V LA +L +
Sbjct: 132 VSMGVSKE--EAK---KRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDF 186
Query: 274 LVLDEATASVDTATDNLIQHTLGQ-HFSDCTVITIAHRITSVI 315
LV DE TA +D I + T+I + H + +V+
Sbjct: 187 LVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL 229
|
Length = 305 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 28/193 (14%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLSIIPQDPTMFEGS 206
+VG G+GKSTL+ + + +G I G + + +L R R + Q F
Sbjct: 30 LVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMP 88
Query: 207 VHNNL---DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263
V + L P + E + + L +++ ++ +L S G+ Q V L
Sbjct: 89 VWHYLTLHQPDKTRT-ELLNDVAGALALDDKLGRSTNQL-----------SGGEWQRVRL 136
Query: 264 ARVLLK-------KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSV 314
A V+L+ ++L+LDE S+D A + + L ++ +H +
Sbjct: 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL-SALCQQGLAIVMSSHDLNHT 195
Query: 315 I-DSDMVLLLSYG 326
+ + LL G
Sbjct: 196 LRHAHRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 57/237 (24%), Positives = 89/237 (37%), Gaps = 54/237 (22%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
L + T G ++G +G GK+TL+ + V G I +DG +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE--------- 66
Query: 192 RLSIIPQDPTMFEGSV--HNNLDPLEEYADEEIWE-ALDKCQLGNEVRKNEGKLESRVT- 247
P G V + L P W D G ++ K++
Sbjct: 67 -------GPGAERGVVFQNEGLLP---------WRNVQDNVAFGLQLA-GVEKMQRLEIA 109
Query: 248 ---------ENGEN---W--SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
E E W S GQRQ V +AR L ++L+LDE ++D T +Q
Sbjct: 110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
Query: 294 TLGQ--HFSDCTVITIAHRI-TSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
L + + V+ I H I +V + ++LLS G P R++E +FA+
Sbjct: 170 LLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG-------PGRVVERLPLNFAR 219
|
Length = 255 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDG--IDISSIGLHDLRSRLSIIPQD---- 199
G+ G G+G++ L+Q LF G + I+G +DI + +R+ ++++P+D
Sbjct: 290 GVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMVPEDRKRH 348
Query: 200 ---PTMFEGSVHN-NLDPLEEYADE-EIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254
P + G N L L+ + + I A + +G+ +++ + K S G S
Sbjct: 349 GIVPILGVG--KNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-RLS 405
Query: 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD-CTVITIAHRITS 313
G +Q LA++LL +VL+LDE T VD I + Q + +I ++ +
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE 465
Query: 314 VID-SDMVLLLSYG 326
V+ SD VL++ G
Sbjct: 466 VLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 32/213 (15%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
L+G++ T G G +G G+GK+T ++ L +++PT+G + + G+
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLR 94
Query: 192 RLSIIPQDPTMFEGSVHNNLDPLEEYA---------DEEIWEALDKC----QLGNEVRKN 238
R+ ++ T + +L ++ + + LD+ L +
Sbjct: 95 RIGVVFGQKT----QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTP 150
Query: 239 EGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298
+L S+GQR +A LL + ++L LDE T +D I++ L ++
Sbjct: 151 VRQL-----------SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 299 FSD--CTVITIAHRITSVID-SDMVLLLSYGLI 328
+ TV+ +H + + + VL++ G +
Sbjct: 200 NRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 42/248 (16%)
Query: 111 PSQGEVDIHGLQVRY---APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167
++ + + L + + + V R L+ + G IVG +GSGKS L R++
Sbjct: 8 DARDVLAVENLNIAFMQEQQKIAAV-RNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66
Query: 168 EPTAGLIAIDGI-------------DISSIGLHDLR-SRLSIIPQDPTMFEGSVHNNLDP 213
E GL+ D + + S+ + +R + +++I Q+P +L+P
Sbjct: 67 EQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM-------TSLNP 119
Query: 214 LEEYADEEIWEALDKCQ-LGNEVRKNEGK--LES-RVTENGE-------NWSMGQRQLVC 262
+ E+I E++ Q E E K L+ R+ E S G RQ V
Sbjct: 120 VFTVG-EQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVM 178
Query: 263 LARVLLKKSKVLVLDEATASVD-TATDNLIQ--HTLGQHFSDCTVITIAHRITSVID-SD 318
+A L + VL+ DE T ++D T ++Q L + S VI I H + V + +D
Sbjct: 179 IAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS-MGVIFITHDMGVVAEIAD 237
Query: 319 MVLLLSYG 326
VL++ G
Sbjct: 238 RVLVMYQG 245
|
Length = 623 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 26/166 (15%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI--SSIGLHDL 189
VL + G I+G +GSGKSTL++ + ++ E T+G + +DG+ + + +
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 190 R-------SRLSIIPQ----DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKN 238
R + + P + MF G + EE A+++ E L K +G
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMF-GPLRVRGASKEE-AEKQARELLAK--VG------ 125
Query: 239 EGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
L R S GQ+Q V +AR L K K+++ DE T+++D
Sbjct: 126 ---LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 39/180 (21%)
Query: 129 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI----DGIDISSI 184
LP VLR ++ + G + G +GSGKSTL+++L+ P G I + + +D+ +
Sbjct: 24 LP-VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82
Query: 185 GLH---DLRSR--------LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN 233
++R L +IP+ LD + E + +
Sbjct: 83 EPREVLEVRRTTIGYVSQFLRVIPRVSA---------LDVVAEPLLARGVPR-EVAR--A 130
Query: 234 EVRKNEGKLESRVTENGENWSM-------GQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
+ L +R+ WS+ G++Q V +AR + +L+LDE TAS+D
Sbjct: 131 KAAD----LLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAT 186
|
Length = 235 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 38/158 (24%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--IDISSI----GLHDLRSRLSIIPQD-- 199
++G +G+GKS+L++ L + P +G + I G D S + DLR + ++ Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 200 --PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLES-------RVTENG 250
P + +V NL EA + LG + K++ + R+
Sbjct: 93 LWPHL---TVQENL-----------IEAPCRV-LG--LSKDQALARAEKLLKRLRLKPYA 135
Query: 251 ENW----SMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ + S GQ+Q V +AR L+ + +VL+ DE TA++D
Sbjct: 136 DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
|
Length = 242 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 37/211 (17%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--------IVEPTAGLIAIDGIDISS 183
VLR L G +VG++G+GK+TL++ + P +G + + +S+
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 184 IGLHDLRSRLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEALDKCQLGNEVRKNEGK 241
+P E ++ +L + A EI L++ L + V
Sbjct: 458 -------LIPGEY--EPEFGEVTILEHLRSKTGDLNAAVEI---LNRAGLSDAVL----- 500
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ---HTLGQH 298
+ E S GQ++ LA++L ++ VL++DE A +D T + L +
Sbjct: 501 ---YRRKFSE-LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556
Query: 299 FSDCTVITIAHR--ITSVIDSDMVLLLSYGL 327
T+I + HR + + + D ++L+ YG
Sbjct: 557 AG-ITLIVVTHRPEVGNALRPDTLILVGYGK 586
|
Length = 593 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ--HF 299
L + N S GQ+Q V +AR L+ + K+++ DE TA++D+ + + + +
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 300 SDCTVITIAH--RITSVID 316
CT++ + H RI V D
Sbjct: 191 QGCTILIVTHDNRILDVAD 209
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 40/159 (25%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG--------IDISSIGLHDLRSRLSIIPQD 199
++G +G+GKS+L++ L + P +G + I G +I LR + ++ Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE--LRRNVGMVFQQ 90
Query: 200 ----PTMFEGSVHNNLDPLEEYADEEIWEA------LDKCQLGNEVRKNEGKLESRVTEN 249
P + +V NL EA L K Q K +L R+
Sbjct: 91 YNLWPHL---TVQQNL-----------IEAPCRVLGLSKDQALARAEKLLERL--RLKPY 134
Query: 250 GENW----SMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ + S GQ+Q V +AR L+ + +VL+ DE TA++D
Sbjct: 135 ADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
|
Length = 242 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 28/229 (12%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
VL ++ G ++G +GSGK+TL++ + + T+G I G D+S LH
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDR 74
Query: 192 RLSIIPQDPTMFEG-SVHNNLD-----------PLEEYADEEIWEALDKCQLGNEVRKNE 239
++ + Q +F +V +N+ P ++ + L+ QL + +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299
+L S GQ+Q V LAR L + ++L+LDE ++D ++ L Q
Sbjct: 135 AQL-----------SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 300 SDC--TVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345
+ T + + H ++ +D V+++S G IE+ +P ++ ++ F
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 3e-04
Identities = 38/188 (20%), Positives = 56/188 (29%), Gaps = 60/188 (31%)
Query: 145 KTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203
IVG GSGK+TL + L R + P G+I IDG DI L L + +
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63
Query: 204 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263
E + R L
Sbjct: 64 E--------------------------------------------------LRLRLA--L 71
Query: 264 ARVLLKKSKVLVLDEATASVDTATDNLIQ-------HTLGQHFSDCTVITIAHRITSVID 316
A K VL+LDE T+ +D + L+ L + + TVI + +
Sbjct: 72 ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131
Query: 317 SDMVLLLS 324
+ +
Sbjct: 132 ALLRRRFD 139
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 44/215 (20%)
Query: 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RSR 192
L+ G +VG G+GKSTL L R+ + P +G I G + + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTL---LARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 193 LSIIPQDPTMFEGSVHNNL-----DPLEEYADE----EIWEALDKCQLGNEVRKNEGKLE 243
+ Q F V L D A E+ EAL L + KL
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEAL---GLDD-------KLG 121
Query: 244 SRVTENGENWSMGQRQLVCLARVLLK-------KSKVLVLDEATASVD----TATDNLIQ 292
V S G+ Q V LA V+L+ ++L+LDE S+D A D L+
Sbjct: 122 RSVN----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 293 HTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326
Q + V+ +H + + +D V LL G
Sbjct: 178 ELCQQGIA---VVMSSHDLNHTLRHADRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-DGIDISSIGLHDL 189
++L + + G + G++GR G+GKSTLI+ L + P +G I + GI + H L
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385
Query: 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
F + + L L A +E+ + L + LG G +VTE
Sbjct: 386 E------------FLRADESPLQHLARLAPQELEQKL-RDYLG-----GFGFQGDKVTEE 427
Query: 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+S G++ + LA ++ ++ +L+LDE T +D
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 39/172 (22%), Positives = 90/172 (52%), Gaps = 14/172 (8%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS-SIGLHDLRSRLSIIPQDPTMF-EG 205
++G G+GKSTL++ LF I + +G I G +I L + +S++ Q+ + +
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88
Query: 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRV--TENGENWSMGQRQLVCL 263
SV +N+ L Y + ++ +D+ ++ + + +L+ + S+ Q Q++ +
Sbjct: 89 SVMDNM-WLGRYPTKGMF--VDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEI 145
Query: 264 ARVLLKKSKVLVLDEATASVDTATDNLIQH--TLGQHFSD--CTVITIAHRI 311
A+ +K++++DE T+S+ T+ + H T+ + + C ++ I+H++
Sbjct: 146 AKAFSYNAKIVIMDEPTSSL---TEKEVNHLFTIIRKLKERGCGIVYISHKM 194
|
Length = 491 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 52/197 (26%)
Query: 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-DGIDISSIGLHDL 189
L++ L+ G G++G G+GKSTL + + +P +G I I + + ++ +
Sbjct: 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVD---- 391
Query: 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN-EV------------- 235
+SR + LDP + EEI LD QLG EV
Sbjct: 392 QSR----------------DALDP-NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG 434
Query: 236 ---RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292
+K G+L S G+R V LA+ L VL+LDE T +D T ++
Sbjct: 435 SDQQKKVGQL-----------SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE 483
Query: 293 HTLGQHFSDCTVITIAH 309
L F+ C V+ I+H
Sbjct: 484 EAL-LEFAGCAVV-ISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP--QDPTMFEG 205
I+G G+GK+T++ + P G + G D++ + H + +R I Q PT+FE
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-ARAGIGRKFQKPTVFEN 91
Query: 206 -SVHNNLDPLEEYADEEIWEALDKCQLGNEVRK------NEGKLESRVTENGENWSMGQR 258
+V NL+ L D+ ++ +L +L E + L S GQ+
Sbjct: 92 LTVFENLE-LALPRDKSVFASLFF-RLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQK 149
Query: 259 QLVCLARVLLKKSKVLVLDEATASVDTA----TDNLIQHTLGQHFSDCTVITIAH 309
Q + + +L++ K+L+LDE A + T L++ G+H +V+ + H
Sbjct: 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKH----SVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 36/168 (21%)
Query: 147 GIVGRTGSGKSTLIQTLFRI-----VEPTAGLIAIDGIDI---SSIGLHDLR-SRLSIIP 197
+VG +GSGKS ++ + +G I DG D+ S L +R +++ +I
Sbjct: 40 ALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIF 99
Query: 198 Q------DPTMFEGS-------VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLES 244
Q +P G +H L A E L+ + + E +L++
Sbjct: 100 QEPMTSLNPLHTIGKQLAEVLRLHRGLS--RAAARARALELLELVGI----PEPEKRLDA 153
Query: 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292
E S GQRQ V +A L + +L+ DE T TA D +Q
Sbjct: 154 YPHE----LSGGQRQRVMIAMALANEPDLLIADEPT----TALDVTVQ 193
|
Length = 534 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 29/156 (18%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQ 198
G + I+G +G+GKSTL+ + + P +G + ++G D H R +S++ Q
Sbjct: 25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD------HTTTPPSRRPVSMLFQ 78
Query: 199 DPTMFEG-SVHNN----LDP---LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
+ +F +V N L+P L E++ + + + + + G+L
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQL-------- 130
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
S GQRQ V LAR L+++ +L+LDE +++D A
Sbjct: 131 ---SGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 30/158 (18%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+ ++ G G++G G+GK+T + + ++EPT G I +G +S +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKN 72
Query: 192 RLSIIPQDPTMFEGSVHNNLDPLEE---------YADEEIWEALDKCQLGNEVRKNE--G 240
R+ +P+ E ++ + ++ EI + +L + + E G
Sbjct: 73 RIGYLPE-----ERGLYPKMTVEDQLKYLAELKGMPKAEI-----QKKLQAWLERLEIVG 122
Query: 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278
K ++ + S G +Q + ++ + ++L+LDE
Sbjct: 123 KKTKKI----KELSKGNQQKIQFISAVIHEPELLILDE 156
|
Length = 300 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 47/227 (20%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP----TMF 203
++G +G GK+T+++ + P +G I +DG DI+ + P + T+F
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV------------PAENRHVNTVF 92
Query: 204 EG-------SVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248
+ +V N+ P E + EAL QL E
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEIT-PRVMEALRMVQL-----------EEFAQR 140
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVIT 306
S GQ+Q V +AR ++ K KVL+LDE+ +++D +Q+ L Q T +
Sbjct: 141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200
Query: 307 IAH-RITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSF-AQLVAE 351
+ H + ++ SD ++++ G IE+ +P + E + F A+ + E
Sbjct: 201 VTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIGE 247
|
Length = 375 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 43/158 (27%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRLSIIPQD----PT 201
++G G+GKSTL++ L +P AG I IDG ++ L + ++II Q+ P
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93
Query: 202 MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK----NEGKLESRVTEN----GEN- 252
M +V NL LG K N L E G +
Sbjct: 94 M---TVAENL------------------YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI 132
Query: 253 --------WSMGQRQLVCLARVLLKKSKVLVLDEATAS 282
S+GQRQ+V +A+ L + ++V+ DE T+S
Sbjct: 133 DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 39/186 (20%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRLSIIPQDPTMFEG 205
+VG G+GKST+++ L I AG I G +++ G + + + II Q+
Sbjct: 34 ALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQEL----- 88
Query: 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG------------KLESRV------- 246
NL P A E I+ LG E G KL +R+
Sbjct: 89 ----NLIPQLTIA-ENIF-------LGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD 136
Query: 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT-ASVDTATDNLIQHTLGQHFSDCTVI 305
GE S+G++Q+V +A+VL +SKV+++DE T A DT T++L + ++
Sbjct: 137 KLVGE-LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIV 195
Query: 306 TIAHRI 311
I+HR+
Sbjct: 196 YISHRL 201
|
Length = 501 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL---------RSRLSIIP 197
GIVG +GSGK+TL+ L + P AG + D L+ L R+ +
Sbjct: 36 GIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95
Query: 198 QDP 200
Q P
Sbjct: 96 QHP 98
|
Length = 258 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 51/204 (25%)
Query: 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199
F GG + G++G G GKST ++ L +EP+AG +++ D RL + QD
Sbjct: 24 FGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL-----------DPNERLGKLRQD 72
Query: 200 PTMFEG-SVHNNLDPLEEYADEEIWEAL---DKCQLGNEVRKNEG----KLESRVTE--- 248
FE +V LD + E+WE D+ E+ + +G LE + E
Sbjct: 73 QFAFEEFTV---LDTVI-MGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDG 128
Query: 249 ------NGE------------NWSM-----GQRQLVCLARVLLKKSKVLVLDEATASVDT 285
GE M G + V LA+ L +L+LDE T ++D
Sbjct: 129 YTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDI 188
Query: 286 ATDNLIQHTLGQHFSDCTVITIAH 309
T ++ L + + T+I I+H
Sbjct: 189 NTIRWLEDVLNE--RNSTMIIISH 210
|
Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.002
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+++ L Y L +L+ ++ T G + G+VGR G+GKSTL++ + +EP G++
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 176 ID 177
Sbjct: 59 WG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.002
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295
S GQ+Q V +AR L++++KV++ DE AS+D + ++ TL
Sbjct: 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTL 195
|
Length = 262 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 53/244 (21%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTA-------GLIAIDGIDISS 183
+LR L+ G T ++GR G+GKSTL++ L + A G + ++G +++
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 184 IGLHDLRSRLSIIPQ--DPTMFEGSV----------HNNLDPLEEYADEEI-WEALDKCQ 230
I L +++PQ P F S H + D EI W+AL
Sbjct: 76 IDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 231 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK---------KSKVLVLDEATA 281
V ++ L S G+ V ARVL + + L+LDE TA
Sbjct: 135 ATALVGRDVTTL-----------SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 282 SVDTATDNLIQHTLGQHFSDCT------VITIAHRIT-SVIDSDMVLLLSYGLIEEFDSP 334
++D A QH L V+ I H + +D + +L+ G I +P
Sbjct: 184 ALDLAH----QHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
Query: 335 TRLL 338
+L
Sbjct: 240 ADVL 243
|
Length = 272 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 31/188 (16%)
Query: 111 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKS----TLIQTLFRI 166
P Q +++ + + PLV G++ T G +VG +GSGKS + L
Sbjct: 2 PQQ--IELRNIAL--QAAQPLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAG 56
Query: 167 VEPTAGLIAIDGIDISSIGLHDLRSRL-SIIPQDP--------TMFEGSVHNNLDPLEEY 217
V TAG + +DG ++ LR R + I Q+P TM + L +
Sbjct: 57 VRQTAGRVLLDGKPVA---PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA 113
Query: 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTE-NGENWSMGQRQLVCLARVLLKKSKVLVL 276
D + AL+ L N R L+ E +G M QR ++ LA LL ++ ++
Sbjct: 114 DDATLTAALEAVGLENAAR----VLKLYPFEMSG---GMLQRMMIALA--LLCEAPFIIA 164
Query: 277 DEATASVD 284
DE T +D
Sbjct: 165 DEPTTDLD 172
|
Length = 254 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 29/142 (20%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD-PTMFEG 205
GI+G G GK+T ++ L +++P G D+ ++S PQ ++G
Sbjct: 371 GILGPNGIGKTTFVKLLAGVIKPDEG----SEEDL----------KVSYKPQYISPDYDG 416
Query: 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKN---EGKLESRVTENGENWSMGQRQLVC 262
+V E+ I A E+ K E LE V E S G+ Q V
Sbjct: 417 TV-------EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE----LSGGELQRVA 465
Query: 263 LARVLLKKSKVLVLDEATASVD 284
+A L +++ + +LDE +A +D
Sbjct: 466 IAAALSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 29/220 (13%)
Query: 146 TGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDLRSR-LSIIPQDP 200
+VG +GSGKS + ++ P T+G I +DG + + +R R ++ I Q+P
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGRHIATIMQNP 71
Query: 201 TMFEGSVHN----------NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250
+ +L L + A I EAL+ L E L+ +
Sbjct: 72 RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGL----PDPEEVLKKYPFQ-- 125
Query: 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVITIA 308
S G Q V +A LL + L+ DE T +D + L + ++ I
Sbjct: 126 --LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT 183
Query: 309 HRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
H + V +D V ++ G I E + + N +
Sbjct: 184 HDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 47/173 (27%), Positives = 66/173 (38%), Gaps = 48/173 (27%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRLSIIPQDPTM-FEG 205
+VGR G+GKSTL++ L V G I + DL +RL QDP EG
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ---------DLIVARL---QQDPPRNVEG 81
Query: 206 SV------------------HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG--KLESR 245
+V H+ +E E+ L K Q E + +LE+R
Sbjct: 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQ---EQLDHHNLWQLENR 138
Query: 246 VTENGE-----------NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
+ E + S G + L R L+ VL+LDE T +D T
Sbjct: 139 INEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.98 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.97 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.97 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.96 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.96 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.96 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.95 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.95 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.95 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.95 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.95 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.93 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.93 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.93 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.91 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.9 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.89 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.89 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.88 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.86 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.85 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.85 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.85 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.84 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.84 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.84 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.83 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.81 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.81 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.8 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.77 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.76 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.76 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.76 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.73 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.73 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.71 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.69 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.66 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.65 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.6 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.59 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.58 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.57 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.55 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.54 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.5 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.46 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.46 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.46 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.44 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.42 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.42 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.4 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.39 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.36 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.36 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.34 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.31 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.3 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.3 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.3 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.29 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.29 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.26 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.26 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.2 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.18 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.18 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.17 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.16 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.12 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.09 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.07 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.05 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.93 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.93 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.91 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.9 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.81 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.81 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.79 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.78 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.74 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.74 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.72 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.69 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.67 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.62 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.6 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.6 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.59 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.57 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.54 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.51 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.51 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.5 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.5 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.48 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.47 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.45 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.44 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.42 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.36 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.36 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.34 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.34 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.33 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.33 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.33 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.31 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.31 | |
| COG3044 | 554 | Predicted ATPase of the ABC class [General functio | 98.3 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.29 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.28 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.28 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 98.24 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.23 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 98.2 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-77 Score=643.23 Aligned_cols=353 Identities=54% Similarity=0.924 Sum_probs=334.8
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 2 KLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRI 81 (362)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
.++|.|++++|+..+++||+++|+|+++.+++.+++++.+....+.++|+.+|+.++|++.++..++++++...++++.+
T Consensus 1025 ~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m 1104 (1381)
T KOG0054|consen 1025 ELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNM 1104 (1381)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999988887777666555447799999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHH
Q 018040 82 ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ 161 (362)
Q Consensus 82 ~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~ 161 (362)
+|+||+.+|.++++|+++..+...++..||..|.|+|+|++.+|.++.++||+||||+|+|||++||||++|||||||++
T Consensus 1105 ~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~ 1184 (1381)
T KOG0054|consen 1105 VSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLIL 1184 (1381)
T ss_pred hhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHH
Confidence 99999999999888855555555578899999999999999999998889999999999999999999999999999999
Q ss_pred HHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhcccc
Q 018040 162 TLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGK 241 (362)
Q Consensus 162 ~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 241 (362)
+|.|+.+|.+|+|.|||.||.+++++++|++++++||||.+|+||+|.||+|+.+++|+++|++|++++|.+.+..+|.+
T Consensus 1185 aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1185 ALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred HHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~ 321 (362)
||+.+.|+|.|+|-||||.+||||||+++++||+|||+||++|++|...|++.|++..++||||.|+||++++.+||||+
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 322 LLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 322 vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|||+|+|+|+|+|.+|++++++.|.+++.+...
T Consensus 1345 Vld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~ 1377 (1381)
T KOG0054|consen 1345 VLDAGRVVEFDSPAELLSDKDSLFSSLLKEAAL 1377 (1381)
T ss_pred EeeCCeEeecCChHHHHhCCcchHHHHHHHHHH
Confidence 999999999999999999988889877766543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-72 Score=565.20 Aligned_cols=312 Identities=28% Similarity=0.426 Sum_probs=286.0
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..|.++++.+..++.|...+...+..+...++++.+...|.+|++++++.+|.-+. . +...+. ...+.|+|+||
T Consensus 396 Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~--~-G~~~p~-~~~G~IeF~~V 471 (716)
T KOG0058|consen 396 LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL--T-GTLAPD-HLQGVIEFEDV 471 (716)
T ss_pred hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC--C-Cccccc-cccceEEEEEe
Confidence 3456888999998899999999999999999999999999999999999987664321 1 111111 35688999999
Q ss_pred EEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 122 QVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 122 ~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
+|.|+.. ..++|+|+||+|+|||++|+|||||+||||+.++|.++|+|++|+|.+||+||++++...+|++||+|.|+|
T Consensus 472 sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 472 SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 9999865 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 201 TMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 201 ~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
.||++||+|||.++. ..+++++..+.+.++.++++..+|+|++|.+||+|.+||||||||+||||||++||.||||||+
T Consensus 552 vLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA 631 (716)
T KOG0058|consen 552 VLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA 631 (716)
T ss_pred eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech
Confidence 999999999998864 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhhccC
Q 018040 280 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 357 (362)
||+||.+++..+++.|.+..+++|||+|+||+++++.||+|+|+++|+|+|.|+|+|+++++++.|+++++++.....
T Consensus 632 TSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~~ 709 (716)
T KOG0058|consen 632 TSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSGE 709 (716)
T ss_pred hhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccCC
Confidence 999999999999999999888999999999999999999999999999999999999999988899999988765443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=616.33 Aligned_cols=350 Identities=43% Similarity=0.738 Sum_probs=312.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGV-----VDPAIAGLAVTFGLNLNMLQASLISKLCNL 77 (362)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (362)
.+|.++++++.....++|+.+++++++++++.+...+.+.. .+. ..++.+|.+++|...+...+.++...+..+
T Consensus 1121 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~ 1199 (1622)
T PLN03130 1121 SMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLA 1199 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999988876654444332221 221 125678889999988888899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHH
Q 018040 78 ENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKS 157 (362)
Q Consensus 78 ~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKS 157 (362)
+..+.|++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999887764322222233446788889999999999976656799999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHh
Q 018040 158 TLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK 237 (362)
Q Consensus 158 TLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~ 237 (362)
||+++|+|+++|++|+|.|||+|+.+++.+++|++|++|||+|.+|++|+|+||++..++++++++++++++++++++..
T Consensus 1280 TLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1280 SMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhc
Q 018040 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS 317 (362)
Q Consensus 238 ~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 317 (362)
+|.||||.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 318 DMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|||+||++|+|+|.|+|++|++++++.|++++.+..
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999876688999887544
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-71 Score=571.79 Aligned_cols=340 Identities=31% Similarity=0.400 Sum_probs=298.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 8 SRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFII-SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVER 86 (362)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~R 86 (362)
.+..+.......|......++..+..+++++++. .+..+.++.+.+..+.++...+..++..++..+.++++...+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~r 445 (709)
T COG2274 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALER 445 (709)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555444444432 345678888877777777788999999999999999999999999
Q ss_pred HHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 87 ILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.++++.++|.+.. ......++..+.|+++||+|+|+.+.+++|+|+|++|++||++||||+||||||||+|+|+|+
T Consensus 446 L~dil~~~~E~~~~---~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 446 LGDILDTPPEQEGD---KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred HHHHhcCCcccccc---cccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999988774421 111223345688999999999998877899999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhh
Q 018040 167 VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESR 245 (362)
Q Consensus 167 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~ 245 (362)
|+|++|+|++||.|+.+++...+|++||||+||+.+|++|++||+.+... .+++++.++++.+++++++.++|.||+|.
T Consensus 523 y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 523 YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999998654 56799999999999999999999999999
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++|+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|.+...++|+|+||||+++++.||||+||++
T Consensus 603 v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~ 682 (709)
T COG2274 603 VGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682 (709)
T ss_pred cccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+|+++|+|+|+++. ++.|.+++..
T Consensus 683 Gkiv~~gs~~ell~~-~g~y~~l~~~ 707 (709)
T COG2274 683 GKIVEQGSHEELLAQ-GGLYARLYQQ 707 (709)
T ss_pred CceeccCCHHHHHHh-cChHHHHHhc
Confidence 999999999999998 7788888764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=614.69 Aligned_cols=348 Identities=42% Similarity=0.744 Sum_probs=315.3
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 2 KLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRI 81 (362)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+.+|.+++++|.....++|+.+++++++.+++.++..+.+ ...+.++++.++++++|...+..++.+++..+.+++..+
T Consensus 1172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~ 1250 (1522)
T TIGR00957 1172 LKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNI 1250 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999987765443333222 235678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHH
Q 018040 82 ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ 161 (362)
Q Consensus 82 ~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~ 161 (362)
+|++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||||++
T Consensus 1251 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~ 1330 (1522)
T TIGR00957 1251 VAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTL 1330 (1522)
T ss_pred HHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998776543211222334468888899999999999876557999999999999999999999999999999
Q ss_pred HHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhcccc
Q 018040 162 TLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGK 241 (362)
Q Consensus 162 ~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 241 (362)
+|+|+++|++|+|.|||+|+.+++.+++|++|++|||+|.+|++|+|+||++..++++++++++++.+++++++..+|+|
T Consensus 1331 lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~G 1410 (1522)
T TIGR00957 1331 GLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDK 1410 (1522)
T ss_pred HHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~ 321 (362)
|||.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+
T Consensus 1411 Ldt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIl 1490 (1522)
T TIGR00957 1411 LDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVI 1490 (1522)
T ss_pred CCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 322 LLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 322 vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
||++|+|+|.|+|++|+++ ++.|++++++
T Consensus 1491 Vld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1491 VLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 9999999999999999987 5789998876
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=607.13 Aligned_cols=351 Identities=41% Similarity=0.719 Sum_probs=309.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVV-----DPAIAGLAVTFGLNLNMLQASLISKLCNL 77 (362)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (362)
.+|.+.++.+......+|+.+++++++++++.+...+.+. ..+.+ .++.++++++|...+..++.++...+.++
T Consensus 1118 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~ 1196 (1495)
T PLN03232 1118 SMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKA 1196 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888899999999888776554443332222 12221 14566778888888888888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHH
Q 018040 78 ENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKS 157 (362)
Q Consensus 78 ~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKS 157 (362)
+..+.|++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||
T Consensus 1197 ~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1197 ENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999887664321112223345787889999999999976556799999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHh
Q 018040 158 TLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK 237 (362)
Q Consensus 158 TLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~ 237 (362)
||+++|+|+++|++|+|.|||+|+.+++.+++|++|+||||+|.+|++|+|+||++..++++++++++++.+++++++..
T Consensus 1277 TL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~ 1356 (1495)
T PLN03232 1277 SMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDR 1356 (1495)
T ss_pred HHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhc
Q 018040 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS 317 (362)
Q Consensus 238 ~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 317 (362)
+|.||||.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+|
T Consensus 1357 lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~ 1436 (1495)
T PLN03232 1357 NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDC 1436 (1495)
T ss_pred CcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 318 DMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|||+||++|+|+|.|+|+||++++++.|++++++...
T Consensus 1437 DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1437 DKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred CEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 9999999999999999999998866789999876543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-68 Score=594.34 Aligned_cols=351 Identities=37% Similarity=0.597 Sum_probs=307.1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFII---SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLEN 79 (362)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (362)
.+|.+.++++......+|+.++++++..++..+++++.+ ....+.++++.++++++|...+..++.+++..+..++.
T Consensus 1166 ~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~ 1245 (1560)
T PTZ00243 1166 RLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEA 1245 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888988999999999999887765443333222 11234467888888999998999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCCCcc-----------------------ccCCCC---CCCCCcccEEEEEEEEEeCCCCCce
Q 018040 80 RIISVERILQYMCI-PNEPPLVI-----------------------EASRPN---CSWPSQGEVDIHGLQVRYAPHLPLV 132 (362)
Q Consensus 80 ~~~s~~Rl~~~~~~-~~~~~~~~-----------------------~~~~~~---~~~~~~~~i~~~~l~~~y~~~~~~v 132 (362)
.+.|++|+.++++. ++|..... +...++ ..|+..+.|+|+||+|+|+++.+++
T Consensus 1246 ~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~v 1325 (1560)
T PTZ00243 1246 DMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLV 1325 (1560)
T ss_pred HHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCce
Confidence 99999999999863 32210000 000011 1233457899999999998765679
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcC
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 212 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~ 212 (362)
|+||||+|++||++||||+||||||||+++|+|+++|++|+|++||+|+.+++.+++|++|+||||+|.+|++|||+||+
T Consensus 1326 L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNId 1405 (1560)
T PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD 1405 (1560)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC-CCEEEEeCCCCCCCHHHHHHH
Q 018040 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK-SKVLVLDEATASVDTATDNLI 291 (362)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~-p~illLDEPts~LD~~~~~~i 291 (362)
+..++++++++++++.+++++++..+|.||||.++++|.+||||||||+||||||+++ |+|||||||||+||+++++.|
T Consensus 1406 p~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I 1485 (1560)
T PTZ00243 1406 PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485 (1560)
T ss_pred cccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH
Confidence 8878899999999999999999999999999999999999999999999999999996 899999999999999999999
Q ss_pred HHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 292 QHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 292 ~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||++++++.|+++++...
T Consensus 1486 q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999888899999999999999999999999999999999999999876788999987654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=544.97 Aligned_cols=304 Identities=32% Similarity=0.466 Sum_probs=276.8
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..+.++.+.+..++.|...+..++..+...+..++.+..+.+|+.++++.+++... .... .....+.|+++||+
T Consensus 261 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vs 335 (567)
T COG1132 261 VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVS 335 (567)
T ss_pred HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEE
Confidence 345667888888888888888888888999999999999999999999987543111 1110 12345679999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+++|++|+|++||+|+++++...+|++|+||||++.+
T Consensus 336 f~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 336 FSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred EEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 999853 3699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|+++||.++.+ .++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||
T Consensus 415 F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 99999999998865 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+||+++++.+++.+.+..+++|+|+|+||++++..||+|+||++|+|+|.|+|+||+++ ++.|++++..+.
T Consensus 495 alD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 495 ALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred ccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999977778899999999999999999999999999999999999998 789999998754
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-67 Score=550.91 Aligned_cols=300 Identities=26% Similarity=0.374 Sum_probs=272.3
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..|.++.+.+..+..+...+..++..+...+.+++.+..+.+|+.++++.+++... .... ..+..+.|+++||+|
T Consensus 385 ~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~~~nvsf 459 (686)
T TIGR03797 385 GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIEVDRVTF 459 (686)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEEEEEEEE
Confidence 46788888877777787888888888999999999999999999999987654321 1111 112345799999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|++..+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+++.+++|++||||||++++|
T Consensus 460 ~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf 539 (686)
T TIGR03797 460 RYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM 539 (686)
T ss_pred EcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccC
Confidence 99765567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 204 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 204 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
++|++||+.+..+.++++++++++.+++++++..+|.|++|.++++|.+||||||||++|||||+++|++||||||||+|
T Consensus 540 ~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~L 619 (686)
T TIGR03797 540 SGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSAL 619 (686)
T ss_pred cccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 99999999987668899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+.+++.+.+.+++. ++|+|+||||++.+..||+|++|++|+|++.|++++++++ ++.|++++..
T Consensus 620 D~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 620 DNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 999999999999876 5899999999999999999999999999999999999986 6788888764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-67 Score=543.20 Aligned_cols=289 Identities=21% Similarity=0.345 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeE
Q 018040 59 FGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTC 138 (362)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl 138 (362)
+...+..++..+...+..++++..+.+|+.++++.+++... ........+..+.|+++||+|.|.++ +++|+|+||
T Consensus 296 l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l 371 (588)
T PRK11174 296 LAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ---QGEKELASNDPVTIEAEDLEILSPDG-KTLAGPLNF 371 (588)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCccccCCCCCceEEEEeeEEeccCC-CeeeeeeEE
Confidence 33455566777788888999999999999999986643211 01101111123469999999877654 469999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC-CC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EY 217 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~-~~ 217 (362)
+|++||++||+||||||||||+++|+|++ |++|+|.+||+++.+++.+++|++|+||||+|++|++|++|||.+.. +.
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~ 450 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDA 450 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999874 58
Q ss_pred CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 018040 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297 (362)
Q Consensus 218 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~ 297 (362)
++++++++++.+++++++.++|+|++|.++|+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.+.+
T Consensus 451 ~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 451 SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 298 HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 298 ~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
..+++|+|+||||++.+..||+|++|++|++++.|+|+|++++ ++.|++++..+.
T Consensus 531 ~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 531 ASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred HhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 8889999999999999999999999999999999999999987 568988887654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=586.59 Aligned_cols=348 Identities=31% Similarity=0.577 Sum_probs=308.3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRII 82 (362)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (362)
.+|.+++++|...+.++|+.+++++++.+++..++++.+.. ..+.++.+|.+++|...+...+.+++..+.+++..+.
T Consensus 1093 ~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~--~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~ 1170 (1490)
T TIGR01271 1093 ALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT--NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMR 1170 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999988765443333322221 2345667888888888888888888999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccc--------------cCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEE
Q 018040 83 SVERILQYMCIPNEPPLVIE--------------ASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGI 148 (362)
Q Consensus 83 s~~Rl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~i 148 (362)
|++|+.++++.++|.....+ ...++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++||
T Consensus 1171 s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaI 1250 (1490)
T TIGR01271 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGL 1250 (1490)
T ss_pred HHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEE
Confidence 99999999987765331111 0112345888889999999999987666899999999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHH
Q 018040 149 VGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDK 228 (362)
Q Consensus 149 vG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~ 228 (362)
||+||||||||+++|+|+++ ++|+|+|||+|+.+++.+.+|++|+||||+|.+|++|+|+||++...+++++++++++.
T Consensus 1251 vGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1251 LGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEE 1329 (1490)
T ss_pred ECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHH
Confidence 99999999999999999997 79999999999999999999999999999999999999999998888899999999999
Q ss_pred cCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEe
Q 018040 229 CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIA 308 (362)
Q Consensus 229 ~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~it 308 (362)
+++.+++..+|.|||+.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|||+||
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 309 HRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 309 H~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
||++++..||||+||++|+|+|.|+|++|+++ ++.|++++++...
T Consensus 1410 HRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred cCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 99999999999999999999999999999975 6789999876553
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=535.87 Aligned_cols=304 Identities=26% Similarity=0.385 Sum_probs=274.7
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++++...+..++..+...+..++.+..+.+|+.++++.+++.+. .. ....+..+.++++||+
T Consensus 274 ~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~vs 348 (582)
T PRK11176 274 SVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GK--RVIERAKGDIEFRNVT 348 (582)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CC--cCCCCCCCeEEEEEEE
Confidence 456788988888888888888888888999999999999999999999886544221 00 1111234569999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+++.+++|++|+||||++.+
T Consensus 349 f~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 349 FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred EecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 99986555799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 203 FEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 203 ~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
|++|++|||.+.. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++|||||+++|+++||||||
T Consensus 429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 9999999998753 36899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
|+||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|++++..+
T Consensus 509 saLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 999999999999999988778999999999999999999999999999999999999987 56899888754
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-66 Score=546.87 Aligned_cols=304 Identities=26% Similarity=0.410 Sum_probs=272.1
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc--CCCCCC-CCCcccEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEA--SRPNCS-WPSQGEVDIH 119 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~ 119 (362)
+..|.++.+.+..++.+...+..++..+...+.+++++..+++|+.++++.+++....... ...... ++..+.|+++
T Consensus 402 v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~ 481 (710)
T TIGR03796 402 VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481 (710)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEE
Confidence 4568888888888888888888888999999999999999999999999876553211100 000111 2234679999
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCC
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 199 (362)
||+|+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.+++|++|+||||+
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 99999987556799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeC
Q 018040 200 PTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278 (362)
Q Consensus 200 ~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDE 278 (362)
+++|++|++|||.+.. ..++++++++++.+++++++..+|.|++|.++++|.+||||||||++|||||+++|++|||||
T Consensus 562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE 641 (710)
T TIGR03796 562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE 641 (710)
T ss_pred ChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 9999999999998764 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHH
Q 018040 279 ATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 279 Pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 349 (362)
|||+||+++++.+.+.+++ .++|+|+||||++.+..||||++|++|+|++.|+|++++++ ++.|++++
T Consensus 642 ptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 642 ATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred ccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 9999999999999999976 48999999999999999999999999999999999999986 56787765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=532.45 Aligned_cols=305 Identities=28% Similarity=0.434 Sum_probs=276.9
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
...|.++.+.+..++.|...+..++..+...+..+++...+.+|+.++++.++++.. .. . .++..+.++++|++
T Consensus 274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~--~-~~~~~~~i~~~~v~ 347 (592)
T PRK10790 274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND--D-RPLQSGRIDIDNVS 347 (592)
T ss_pred HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC--c-cCCCCCeEEEEEEE
Confidence 346778888888788888888888999999999999999999999999876543211 11 1 11234579999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++.+.+|++|+||||+|.+
T Consensus 348 f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 348 FAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred EEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 999754 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
|++|+++||.+..+.++++++++++.++++++++++|+|+||.++++|.+||||||||++|||||+++|+++|||||||+
T Consensus 427 F~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~ 506 (592)
T PRK10790 427 LADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN 506 (592)
T ss_pred ccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 99999999998877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhhc
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQR 355 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 355 (362)
||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|++++......
T Consensus 507 LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 507 IDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhhh
Confidence 9999999999999988778999999999999999999999999999999999999987 57899998866543
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=539.11 Aligned_cols=295 Identities=28% Similarity=0.417 Sum_probs=268.2
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++++...+..++..+...+.+++....+++|+.++++.+++.+.. .......+..+.|+++||+
T Consensus 394 v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~~~~I~~~~vs 470 (694)
T TIGR03375 394 ISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG---TRFLHRPRLQGEIEFRNVS 470 (694)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCccceEEEEEEE
Confidence 3467888888888888888888889999999999999999999999999876553211 1101111234579999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|++..+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++..++|++|+||||++++
T Consensus 471 f~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l 550 (694)
T TIGR03375 471 FAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL 550 (694)
T ss_pred EEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh
Confidence 99986555799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++|||.+..+ .++++++++++.++++++++.+|.|++|.++++|.+||||||||++||||++++|+++|||||||
T Consensus 551 f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts 630 (694)
T TIGR03375 551 FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630 (694)
T ss_pred hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 99999999998754 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|+|+|++++
T Consensus 631 ~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 631 AMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999988788999999999999999999999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=540.98 Aligned_cols=302 Identities=28% Similarity=0.384 Sum_probs=272.0
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..+..+...+..++..+...+..++.+..+++|+.++++.++|.+.. ......++..+.|+++||+
T Consensus 404 v~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 404 VMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK---KKRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc---ccccCCCCCCCcEEEEEEE
Confidence 3578889888888888888888888899999999999999999999999876553211 1101112334679999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+++.+++|++|+||||++++
T Consensus 481 f~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 481 YSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred EEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 999754 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcC--CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 203 FEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 203 ~~~tv~enl~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
|++|++|||.+. ...++++++++++.+++++++..+|.|++|.++++|.+||||||||++||||++++|++|||||||
T Consensus 560 f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T 639 (708)
T TIGR01193 560 FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST 639 (708)
T ss_pred hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 999999999976 357889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|+||+++++.+.+.+++. +++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|+++++
T Consensus 640 s~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 640 SNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred ccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 999999999999999875 67999999999999999999999999999999999999987 567887763
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=506.51 Aligned_cols=327 Identities=26% Similarity=0.380 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhcC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 018040 23 FHIDMLSSIIFVFSLFFI-ISVPE-GVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLV 100 (362)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~ 100 (362)
..+|++.++.+++++++. +.+.. |.++-.....++..+.-|..++..+...+..-.+..++.+++..|++.+.+....
T Consensus 228 ~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~ 307 (559)
T COG4988 228 AVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGS 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCC
Confidence 567888777666655433 33333 5565443333444555677777778888888888899999999999866543221
Q ss_pred cccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 101 IEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
. ......+....+++.+|++|+|+++. ++++|+||++++|+.++|||+||||||||+++|+|+++|++|+|.+||++
T Consensus 308 ~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~ 384 (559)
T COG4988 308 G--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384 (559)
T ss_pred c--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcc
Confidence 1 11112222233566669999998765 69999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 181 i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+.+++.+.||++++||+|+|++|++|++||+.+.+. .++++++++++.+++.++++. |.|+|+.++|+|..|||||+|
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHH
Confidence 999999999999999999999999999999998765 779999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
||++||||+++++++|||||||+||.++++.|.+.|.+..+++|+|+||||+..+..||+|+||++|++++.|+|+++.+
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCcHHHHHHHHHhh
Q 018040 340 NKSSSFAQLVAEYTQ 354 (362)
Q Consensus 340 ~~~~~~~~~~~~~~~ 354 (362)
+ .+.|++++.++..
T Consensus 544 ~-~~~y~~l~~~q~~ 557 (559)
T COG4988 544 K-QGLYANLLKQQEG 557 (559)
T ss_pred c-CcHHHHHHHHHhc
Confidence 7 6789999987654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=539.26 Aligned_cols=299 Identities=27% Similarity=0.429 Sum_probs=267.6
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++.|...+..++..+...+.+++++..+.+|+.++++.+++.+. .. ....++..+.|+++||+
T Consensus 410 v~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~-~~~~~~~~~~I~~~nVs 485 (711)
T TIGR00958 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL---TG-TLAPLNLEGLIEFQDVS 485 (711)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---CC-CCCCCCCCCeEEEEEEE
Confidence 356888988888888888888889999999999999999999999999986554221 11 11112335679999999
Q ss_pred EEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 123 VRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 123 ~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+.+|++|+||||+|+
T Consensus 486 f~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~ 565 (711)
T TIGR00958 486 FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV 565 (711)
T ss_pred EECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc
Confidence 999753 3469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
+|++|++|||.+.. ..++++++++++.++++++++++|+|+||.++++|.+||||||||++||||++++|+|+||||||
T Consensus 566 lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT 645 (711)
T TIGR00958 566 LFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645 (711)
T ss_pred ccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence 99999999998764 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
|+||+++++.+.+ . ...+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++ ++.|+++
T Consensus 646 SaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 646 SALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYKHL 710 (711)
T ss_pred cccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchHhc
Confidence 9999999999998 3 33468999999999999999999999999999999999999987 4577765
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=543.02 Aligned_cols=307 Identities=26% Similarity=0.387 Sum_probs=266.4
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..+.+++..+...+.....-............++..+..|+.+++++++.++.-+...+ ......+..|.|+++||+
T Consensus 917 i~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~ 994 (1228)
T KOG0055|consen 917 ISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVS 994 (1228)
T ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeE
Confidence 356777776655443333222233344455566788999999999999987653221111 111112346889999999
Q ss_pred EEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 123 VRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 123 ~~y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
|+||... .++|+|+||+|++|+.+||||||||||||.+.+|-++|+|++|.|.|||.|+++++++.+|+++|.|.|+|.
T Consensus 995 F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 995 FAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred eeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch
Confidence 9998542 368999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcC-CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
||++|++|||.++ .+.+.+++.++++.++.++++..+|+||||.+||+|.+||||||||+|||||+++||+||||||+|
T Consensus 1075 LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEAT 1154 (1228)
T KOG0055|consen 1075 LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEAT 1154 (1228)
T ss_pred hhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccc
Confidence 9999999999988 346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
|+||.++++.++++|++...++|.|+|+||++++++||.|+|+++|+|+|.|+|++|++. ++.|.++++.+
T Consensus 1155 SALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1155 SALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK-RGIYFRLVQLQ 1225 (1228)
T ss_pred hhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhC-CCchHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999995 78899988754
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-66 Score=503.33 Aligned_cols=336 Identities=24% Similarity=0.377 Sum_probs=281.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 018040 9 RPKFHIAAAMQWLCFHIDMLSSIIFV-FSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLI-SKLCNLENRIISVER 86 (362)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~R 86 (362)
+..........|-.+.+.++..+.++ ..+++......|..+...+.+++..++...+.+..+. .++.++.+...|+.|
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~R 312 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARR 312 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHH
Confidence 33444455566666666666665544 2233333345566553333333333344444455555 778899999999999
Q ss_pred HHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 87 ILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.+..+.+++.... ......+ ...++++||+|+|++.++++|+|+||++++||++||+|+||||||||+++|.|.
T Consensus 313 l~~i~~q~~e~~~~----~~~~~~~-~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~ 387 (573)
T COG4987 313 LNDILDQKPEVTFP----DEQTATT-GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA 387 (573)
T ss_pred HhhhccCCcccCCC----ccccCCc-cceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 99998766543211 0111111 126999999999999888899999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhh
Q 018040 167 VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESR 245 (362)
Q Consensus 167 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~ 245 (362)
++|++|+|.++|.++..++.+++|+.|++++|.+++|++|+|+|+...+ +.+||+++++++++++++.+...|+||+|+
T Consensus 388 ~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~ 467 (573)
T COG4987 388 WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTW 467 (573)
T ss_pred cCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhch
Confidence 9999999999999999999999999999999999999999999998754 578999999999999999999999999999
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++|.|..||||||||++|||+|++|++++||||||.|||+.|++++++.+.+..++||+|+||||+..++.||||+||++
T Consensus 468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~ 547 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDN 547 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|++++.|+|++++.+ ++.|.++++
T Consensus 548 Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 548 GKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred CeeeecCCHHhhhcc-ccHHHHHhc
Confidence 999999999999986 678888765
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-65 Score=523.84 Aligned_cols=300 Identities=27% Similarity=0.382 Sum_probs=262.4
Q ss_pred CCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFG-LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
.+.++.+....++.|. .....++..+...+..++++..+.+|+.++++.+++.... .... ..+..+.|+++||+|
T Consensus 271 ~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~--~~~~~~~i~~~~v~f 346 (574)
T PRK11160 271 GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP--TTST--AAADQVSLTLNNVSF 346 (574)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccC--CCCCCCeEEEEEEEE
Confidence 4556655544444443 3334556667778889999999999999999866542110 0111 112345799999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+++.+++|++|+||||++++|
T Consensus 347 ~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 426 (574)
T PRK11160 347 TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426 (574)
T ss_pred ECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhh
Confidence 99765446999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
++|++||+.+.. ..++++++++++.++++++++. |+|+||.++++|.+||||||||++||||++++|++||||||||+
T Consensus 427 ~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~ 505 (574)
T PRK11160 427 SATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEG 505 (574)
T ss_pred cccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999998764 4688999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|+|+|++++ ++.|+++++
T Consensus 506 lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 506 LDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 9999999999999988788999999999999999999999999999999999999987 678888875
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=500.95 Aligned_cols=305 Identities=27% Similarity=0.441 Sum_probs=279.7
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+.++.+...++.+|...+.+++.++...+..+|.+.+-+|+++++++.++|-. +....++-....|.|+|+||+|.
T Consensus 470 ~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl~~~~G~i~fsnvtF~ 546 (790)
T KOG0056|consen 470 EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPLKVTQGKIEFSNVTFA 546 (790)
T ss_pred eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCccccCCeEEEEEeEEe
Confidence 456677777889999999999999999999999999999999999997655421 11111111234678999999999
Q ss_pred eCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 125 YAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 125 y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
|+++. ++|+||||++.||+.+|+|||||+||||++++|.++++..+|+|.|||+||+......+|+.||+||||..||+
T Consensus 547 Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 547 YDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN 625 (790)
T ss_pred cCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec
Confidence 98764 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 205 GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 205 ~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
.|+..||.+.+ ..++|++.++.+.+++++.+...|+|++|.+||+|-.|||||||||||||+++++|.|++|||+||+|
T Consensus 626 dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 626 DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 99999999875 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|..+++.|+..+.+...++|.|+|+||++++-+||.|+|+++|+|+|.|.|+|++.+.++.|++|++.+.
T Consensus 706 DT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 706 DTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred CCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 9999999999999998999999999999999999999999999999999999999998999999996544
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=496.02 Aligned_cols=301 Identities=28% Similarity=0.429 Sum_probs=265.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+.++.+...+..++...+..++..+...+..+.+++.-+.-++...+.... . ...+.+.....+.|+|+||+|.
T Consensus 286 ~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~---i--~~~~~~i~~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 286 AGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED---I--QEAALPIELFGGSIEFDDVHFS 360 (591)
T ss_pred hccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh---h--hhccCCcccCCCcEEEEeeEEE
Confidence 4456666666677777888888888888888888888877776655432111 0 1111111234567999999999
Q ss_pred eCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 125 YAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 125 y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
|+++. ++|+++||+|++||++||+|+|||||||++|+|+++++ ++|+|+|||+++++++++.+|+.|||||||..||+
T Consensus 361 y~~k~-~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn 438 (591)
T KOG0057|consen 361 YGPKR-KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN 438 (591)
T ss_pred eCCCC-ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccc
Confidence 98764 59999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 205 GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 205 ~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
+||.+||.++. ..+++++.++++++++++.+.++|+|+.|.+||+|..|||||||||+||||+++||+|+++|||||+|
T Consensus 439 dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~L 518 (591)
T KOG0057|consen 439 DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSAL 518 (591)
T ss_pred hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccccc
Confidence 99999999875 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|.++++.+.+.+.....++|+|+|.||+++++.||+|++|++|++.+.|+|+|++. +++.|.+++..+.
T Consensus 519 D~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 519 DSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 99999999999998778999999999999999999999999999999999999999 5778888776443
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=519.44 Aligned_cols=305 Identities=28% Similarity=0.398 Sum_probs=275.1
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..|.++++.+..+.++...+..++..+...+..++++..+.+|+.++++.+++.+. ..... .+..+.++++||
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~--~~~~~~i~~~~v 336 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAI--ERARGDVEFRNV 336 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCC--CCCCCeEEEEEE
Confidence 3456888998888888888888899999999999999999999999999976554221 11111 123457999999
Q ss_pred EEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 122 ~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++.+++.+++|++++|+||+|+
T Consensus 337 ~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 416 (571)
T TIGR02203 337 TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416 (571)
T ss_pred EEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc
Confidence 99997654579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 202 MFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 202 l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
+|++|++||+.+.. +.++++++++++.+++++++.++|.|+||.++++|.+||||||||++||||++++|+++|||||
T Consensus 417 lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEp 496 (571)
T TIGR02203 417 LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEA 496 (571)
T ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999998764 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 280 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||+||+++++.+.+.|.+..+++|+|+|||+++.+..||+|++|++|++++.|++++++++ .+.|++++...
T Consensus 497 ts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 497 TSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999999999988788999999999999988999999999999999999999876 56788876643
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-64 Score=557.50 Aligned_cols=309 Identities=28% Similarity=0.374 Sum_probs=263.9
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCC-CCCCCcccEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPN-CSWPSQGEVDIHGL 121 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l 121 (362)
+..|.++.+.+..++.+......+...+...+..++.+.++.+|+.++++.+++.+......... ......+.|+|+||
T Consensus 1092 v~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nV 1171 (1466)
T PTZ00265 1092 IRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDV 1171 (1466)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEE
Confidence 34677877765554444333333455567788899999999999999998654321100111000 01123467999999
Q ss_pred EEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------------------------------
Q 018040 122 QVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP------------------------------- 169 (362)
Q Consensus 122 ~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p------------------------------- 169 (362)
+|+|++. ..++|+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1172 sF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 (1466)
T PTZ00265 1172 NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVG 1251 (1466)
T ss_pred EEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccc
Confidence 9999753 23699999999999999999999999999999999999998
Q ss_pred -----------------------CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHH
Q 018040 170 -----------------------TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEA 225 (362)
Q Consensus 170 -----------------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~ 225 (362)
++|+|++||+|+.+++...+|++||||||+|.||++|++|||.+.. +.++++++++
T Consensus 1252 ~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A 1331 (1466)
T PTZ00265 1252 MKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRA 1331 (1466)
T ss_pred cccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHH
Confidence 6999999999999999999999999999999999999999999874 4789999999
Q ss_pred HHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCce
Q 018040 226 LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCT 303 (362)
Q Consensus 226 l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~t 303 (362)
++.+++++++..+|+||||.+|++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|.+.. +++|
T Consensus 1332 ~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~T 1411 (1466)
T PTZ00265 1332 CKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKT 1411 (1466)
T ss_pred HHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998873 6899
Q ss_pred EEEEecChhhhhhcCeEEEEeC----CEEE-EecChhHHhhcCCcHHHHHHHH
Q 018040 304 VITIAHRITSVIDSDMVLLLSY----GLIE-EFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 304 vi~itH~l~~~~~~Dri~vl~~----G~i~-~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
+|+||||+++++.||+|+||++ |+++ |.|+|+||+++.++.|++++..
T Consensus 1412 vIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1412 IITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred EEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 9999999999999999999999 9955 8999999997546789988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=523.99 Aligned_cols=305 Identities=27% Similarity=0.387 Sum_probs=275.3
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++.+.+..+.++...+..++..+...+..++++..+++|+.++++.+++.... .... .....+.|+++||+
T Consensus 387 v~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~-~~~~~~~i~~~~vs 462 (694)
T TIGR01846 387 VIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA---GLAA-LPELRGAITFENIR 462 (694)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---CCCC-CCCCCCeEEEEEEE
Confidence 3467888888877888888888889999999999999999999999999876553211 1111 11224579999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++.+++..++|++|+||||++.+
T Consensus 463 f~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 463 FRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred EEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence 99976555699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.+++++++.++|.|++|.++++|.+||||||||++|||||+++|++||||||||
T Consensus 543 f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts 622 (694)
T TIGR01846 543 FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATS 622 (694)
T ss_pred hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 9999999998754 577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
+||+.+++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|++++++++ ++.|++++..+
T Consensus 623 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 623 ALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 99999999999999988788999999999999999999999999999999999999987 57899887643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-63 Score=513.52 Aligned_cols=308 Identities=26% Similarity=0.358 Sum_probs=272.9
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..|.++++.+..++.+...+..++..+...+..+..+..+++|+.++++.+++.+.. ...... .+..+.|+++||
T Consensus 264 ~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~~-~~~~~~I~~~~v 340 (588)
T PRK13657 264 LVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAIDL-GRVKGAVEFDDV 340 (588)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCCc-CCCCCeEEEEEE
Confidence 34578889888888888888888888888888889999999999999998754332110 010011 112346999999
Q ss_pred EEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 122 ~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+|+|++. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+++.+.+|++|+||||+|.
T Consensus 341 sf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 341 SFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred EEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc
Confidence 9999754 459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
+|++|++||+.+.. +.++++++++++.+++.+++.++|.|+||.++++|.+||||||||++|||||+++|+++||||||
T Consensus 420 lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999998764 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|+||+.+++.+.+.+.+..+++|+|+||||++.++.||+|++|++|++++.|++++++++ .+.|.+++.+...
T Consensus 500 s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 572 (588)
T PRK13657 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQGM 572 (588)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhhc
Confidence 999999999999999887778999999999999989999999999999999999999876 5789998876543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-65 Score=537.13 Aligned_cols=306 Identities=26% Similarity=0.367 Sum_probs=265.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+..+++.+..++..++.-...+......+..+..+.++..++++.++..+.-....... .......+.|+|+||+|+
T Consensus 282 ~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~--~~~~~~~g~ief~nV~Fs 359 (1228)
T KOG0055|consen 282 NGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGG--RVLSSIKGEIEFRNVCFS 359 (1228)
T ss_pred cCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccC--CcccccccceEEEEEEec
Confidence 345555554443333333333334444556778889999999999987554322111111 111234678999999999
Q ss_pred eCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 125 YAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 125 y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
||... .++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|+|++||.|+..++.+++|.+||.|.|+|.||
T Consensus 360 YPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF 439 (1228)
T KOG0055|consen 360 YPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF 439 (1228)
T ss_pred CCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhh
Confidence 98763 36999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
..|++|||.++. +.+.+++.++++.++.++++..+|.|++|.++|+|.+|||||||||||||||+++|+|||||||||+
T Consensus 440 ~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSa 519 (1228)
T KOG0055|consen 440 ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSA 519 (1228)
T ss_pred cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 999999999876 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
||+++++.++++|++..+|+|.|+|+|||+++++||+|+||++|+|+|.|+|+||++.+ +.|.+++..+.
T Consensus 520 LD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 520 LDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred cCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999986 89999997664
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=508.34 Aligned_cols=306 Identities=27% Similarity=0.435 Sum_probs=271.9
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..+..+...+..++..+...+.++..+..+++|+.++++.+++.+... ......++..+.|+++||+
T Consensus 267 v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~ 344 (576)
T TIGR02204 267 VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVN 344 (576)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEE
Confidence 35678888888778888888888888899999999999999999999987654321110 0111112234579999999
Q ss_pred EEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 123 VRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 123 ~~y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
|+|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+++..++|++++|+||+|+
T Consensus 345 f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~ 424 (576)
T TIGR02204 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424 (576)
T ss_pred EECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc
Confidence 9997532 469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
+|++|++||+.+.. +.++++++++++.+++.++++.+|.|++|.++++|.+||||||||++||||++++|+++||||||
T Consensus 425 lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt 504 (576)
T TIGR02204 425 LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504 (576)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc
Confidence 99999999998754 46788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+||+.+++.+.+.+++..+++|+|+|||+++.+..||||++|++|++++.|+++++.++ ++.|++++..
T Consensus 505 s~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 505 SALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARL 574 (576)
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHhh
Confidence 999999999999999988778999999999999988999999999999999999999876 6778887754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=504.91 Aligned_cols=305 Identities=26% Similarity=0.323 Sum_probs=272.4
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++.+.+..++.|...+..++..+...+..++.+..+.+|+.++++.+++... ..... .+..+.|+++|++
T Consensus 246 v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~--~~~~~~I~~~~v~ 320 (569)
T PRK10789 246 VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPV--PEGRGELDVNIRQ 320 (569)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCC--CCCCCcEEEEEEE
Confidence 346788888887777788888888888888999999999999999999876543211 10001 1123569999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++++|+||+|.+
T Consensus 321 ~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred EECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99986545699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.+++++++.++|.|++|.++++|.+||||||||++||||++++|+++|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 9999999998763 568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|++++++++ .+.|++++..+.
T Consensus 481 ~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 481 AVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 99999999999999987788999999999999989999999999999999999999876 567888887543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-61 Score=497.32 Aligned_cols=306 Identities=26% Similarity=0.352 Sum_probs=270.9
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++.|...+..++..+...+..+..+..+++|+.++++.+++... ........+..+.++++|++
T Consensus 265 v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~v~ 341 (585)
T TIGR01192 265 VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADAPELPNVKGAVEFRHIT 341 (585)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccCCCCCCCCCeEEEEEEE
Confidence 356788888887788888888888888888889999999999999999875433211 11111111123469999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+.+|+.++|+||++.+
T Consensus 342 ~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 342 FEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred EECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 9997543 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.+++++++..+|.+++|.++++|.+||||||||++|||||+++|+++|||||||
T Consensus 421 f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts 500 (585)
T TIGR01192 421 FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATS 500 (585)
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999999998763 467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|++++++++ ++.|.+++....
T Consensus 501 ~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 501 ALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHhCc
Confidence 99999999999999888778999999999999988999999999999999999999886 578988887654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=466.48 Aligned_cols=342 Identities=26% Similarity=0.419 Sum_probs=297.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 4 VDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRII 82 (362)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (362)
++++.++.........|+++....+.+......... ...+..+.++.+.....-++..++..++..+...+.++.++..
T Consensus 152 ~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~lt 231 (497)
T COG5265 152 LETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALT 231 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhh
Confidence 344455555555666666666665555433333221 2344567888888888889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccccCCCCCCCC-CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHH
Q 018040 83 SVERILQYMCIPNEPPLVIEASRPNCSWP-SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ 161 (362)
Q Consensus 83 s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~ 161 (362)
..+++++.++.+.+.. +....+.-|| ..+.+.|++|+|.|.+.. ++|+++||++++|+.+|+||++|+||||+++
T Consensus 232 dme~mfdLl~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~r 307 (497)
T COG5265 232 DMEKMFDLLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILR 307 (497)
T ss_pred hHHHHHHhhccchhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHH
Confidence 9999999987665422 1112222342 346799999999998764 6999999999999999999999999999999
Q ss_pred HHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccc
Q 018040 162 TLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEG 240 (362)
Q Consensus 162 ~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~ 240 (362)
+|.++|++.+|.|.+||+|+.+.....+|+.||+||||..||+.|+..|+.+.++ .+++++..+++.+++++++..+|+
T Consensus 308 llfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~ 387 (497)
T COG5265 308 LLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE 387 (497)
T ss_pred HHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCch
Confidence 9999999999999999999999999999999999999999999999999998754 678999999999999999999999
Q ss_pred cchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeE
Q 018040 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 241 ~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri 320 (362)
|+++.+||+|-.|||||||||+|||+++++|+||+|||+||+||.++++.|+..|++..+++|.++|+||++++.+||.|
T Consensus 388 gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adei 467 (497)
T COG5265 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEI 467 (497)
T ss_pred hhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 321 LLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 321 ~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
+||++|+|+|.|+|++|+.. ++.|++|+.
T Consensus 468 ivl~~g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 468 IVLDNGRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEeeCCEEEecCcHHHHHHc-CChHHHHhc
Confidence 99999999999999999998 789999874
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-61 Score=493.04 Aligned_cols=291 Identities=22% Similarity=0.315 Sum_probs=261.8
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++.+...+..++..+...+..++.+..+.+|+.++++.+++... .. .. .+..+.++++|++
T Consensus 250 ~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~--~~-~~~~~~i~~~~v~ 323 (544)
T TIGR01842 250 AIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AM--PL-PEPEGHLSVENVT 323 (544)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CC--CC-CCCCCeEEEEEEE
Confidence 346888988888888888888888888899999999999999999999976544211 00 11 1123569999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+.+|+.++|+||+|++
T Consensus 324 ~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 403 (544)
T TIGR01842 324 IVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL 403 (544)
T ss_pred EEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccc
Confidence 99976545699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.++++++++++|+|++|.++++|.+||||||||++||||++++|+++|||||||
T Consensus 404 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts 483 (544)
T TIGR01842 404 FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS 483 (544)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999998554 477899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 282 SVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+||+++++.+.+.+.+.. +++|+|+|||+++.+..||+|++|++|++++.|+++++.+
T Consensus 484 ~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 484 NLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred ccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999998874 5799999999999888899999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-61 Score=492.44 Aligned_cols=266 Identities=29% Similarity=0.448 Sum_probs=236.2
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++.+.+..++.+...+..++..+...+..++++..+.+|+.++++.+++.+... .......++..+.|+++||+
T Consensus 263 ~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vs 341 (529)
T TIGR02868 263 VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLS 341 (529)
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEE
Confidence 34677888887777778878888888888889999999999999999997665422110 00011112234569999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.++ .+++|++|+||||+|++
T Consensus 342 f~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~l 419 (529)
T TIGR02868 342 FGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHL 419 (529)
T ss_pred EecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCccc
Confidence 9997653 599999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++|||.+.. +.++++++++++.+++++++.++|+|+||.++++|.+||||||||++||||++++|+|||||||||
T Consensus 420 F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TS 499 (529)
T TIGR02868 420 FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE 499 (529)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999864 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecCh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRI 311 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 311 (362)
+||+++++.+++.+.+..+++|+|+||||+
T Consensus 500 aLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 500 HLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999887899999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=485.60 Aligned_cols=275 Identities=26% Similarity=0.420 Sum_probs=245.2
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..|.++.+.+..++.|...+..++..+...+..++.+..+.+|+.++++.+++.. ... ....+..+.|+++||+|
T Consensus 254 ~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~---~~~--~~~~~~~~~i~~~~v~f 328 (529)
T TIGR02857 254 LAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA---GKA--PVTAAPAPSLEFSGLSV 328 (529)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC---CCc--CCCCCCCCeEEEEEEEE
Confidence 3677888777777777777777788888889999999999999999997543211 111 11111234799999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+++|++++||||+|++|
T Consensus 329 ~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf 408 (529)
T TIGR02857 329 AYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF 408 (529)
T ss_pred ECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc
Confidence 99875457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
++|++||+.+.. ..++++++++++.++++++++++|+|+||.++++|.+||||||||++||||++++|+++|||||||+
T Consensus 409 ~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~ 488 (529)
T TIGR02857 409 AGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAH 488 (529)
T ss_pred CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 999999998754 4678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|
T Consensus 489 lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 489 LDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999887889999999999999889999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=417.36 Aligned_cols=217 Identities=27% Similarity=0.429 Sum_probs=193.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC-CHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI-GLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~i 193 (362)
.|+++|++++|++. .+|+|||++|++||+++|+|||||||||||+||.||.+|++|+|.++|.++... +...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999865 599999999999999999999999999999999999999999999999877433 567889999
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|+|||++.||+- |+.||+.... ..+ .+...+.|+++|+.+..+.+|. +||||||||||||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999975 9999996431 222 3445677888988877766654 5699999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
|||+.+|+++++|||||+|||+....+.+.++++. +|.|.|+|||++.++.. ||||++|++|+|++.|+|++++.++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999999875 57999999999999999 99999999999999999999999875
Q ss_pred cH
Q 018040 343 SS 344 (362)
Q Consensus 343 ~~ 344 (362)
..
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 44
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=448.04 Aligned_cols=291 Identities=25% Similarity=0.358 Sum_probs=257.4
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..++++++.+...-....-.-.++...+..|.++..+..|.+|+.+++...+.... ..+.+ ...+.+.++++++
T Consensus 269 i~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-----~m~LP-~P~g~L~Ve~l~~ 342 (580)
T COG4618 269 IKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-----RMPLP-APQGALSVERLTA 342 (580)
T ss_pred EcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-----CCCCC-CCCceeeEeeeee
Confidence 46778776543322222233445667788999999999999999999976554221 11111 2357899999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
.-++.++++|+++||++.+||.+|||||||||||||.|+|.|.++|.+|.|++||-++.+++.+++-++|||+||+..||
T Consensus 343 ~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF 422 (580)
T COG4618 343 APPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF 422 (580)
T ss_pred cCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceec
Confidence 88887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCc-CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDP-LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
+|||.|||.- ..+.+++.+.++.+.++.++.+.++|+||||.+|+.|..||||||||++|||||+.+|.+++||||-|+
T Consensus 423 ~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 423 DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 9999999974 447888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 283 VDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||.+.|..+.+.|...+ +|.|+|+||||++.+..+|+|++|++|++..+|+.+|++++
T Consensus 503 LD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999998764 68999999999999999999999999999999999999865
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-57 Score=503.05 Aligned_cols=281 Identities=24% Similarity=0.392 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEE
Q 018040 68 ASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKT 146 (362)
Q Consensus 68 ~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~-~~vL~~isl~i~~Ge~~ 146 (362)
..+...+..++.+..|++|+.++++.+++.+.. ... ...+....|+++||+|+|+... .++|+|+||+|++||++
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~---~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVENN-DDG---KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCC---ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 344556788999999999999999865542210 110 1112224799999999998532 36999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCccEEEE-CCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC----------
Q 018040 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-DGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---------- 215 (362)
Q Consensus 147 ~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---------- 215 (362)
||+||||||||||+++|+|+++|++|+|++ ||.++.+++...+|++||||+|+|.+|++|++||+.+..
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 999999999999999999999999999999 579998888888999999999999999999999997631
Q ss_pred ------------------------------------------------CCCHHHHHHHHHHcCCChHHHhccccchhhhc
Q 018040 216 ------------------------------------------------EYADEEIWEALDKCQLGNEVRKNEGKLESRVT 247 (362)
Q Consensus 216 ------------------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~ 247 (362)
..++++++++++.+++++++..+|.+++|.++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 13467889999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeC
Q 018040 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++|.+||||||||++|||||+++|+|||||||||+||+.+++.+++.|++.. +++|+|+||||++++..||+|++|++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999875 47999999999999988999999998
Q ss_pred C-----------------------------------------------EEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 326 G-----------------------------------------------LIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 326 G-----------------------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
| +|+|+|+|+||++..++.|+.++..+
T Consensus 655 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 655 RERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 6 59999999999985578899988654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=500.38 Aligned_cols=291 Identities=21% Similarity=0.295 Sum_probs=253.8
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..+.++++.+..++++...+..++..++..+..+.++.+|++|+.++++.+++... ..++. .+..+.++++|++|
T Consensus 548 ~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~----~~~~~-~~~~~~I~~~~vsF 622 (1495)
T PLN03232 548 LGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA----QNPPL-QPGAPAISIKNGYF 622 (1495)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc----ccCCc-CCCCCcEEEEeeEE
Confidence 46778888888888888888888888899999999999999999999976543111 00111 11234699999999
Q ss_pred EeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 124 RYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 124 ~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++|+||+|+|++
T Consensus 623 ~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 623 SWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWI 690 (1495)
T ss_pred EcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCcccc
Confidence 99753 35699999999999999999999999999999999999999998763 246789999999999
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
|++|++|||.+..++++++++++++.|++.++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+
T Consensus 691 f~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSa 770 (1495)
T PLN03232 691 FNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770 (1495)
T ss_pred ccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHH-HHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 283 VDTATDNLIQH-TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 283 LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||+++++.+.+ ++....+++|+|+|||+++.+..||+|++|++|+|++.|++++++++ ++.|.+++...
T Consensus 771 LD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l~~~~ 840 (1495)
T PLN03232 771 LDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLMENA 840 (1495)
T ss_pred cCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHHHHhc
Confidence 99999987765 46555678999999999999999999999999999999999999875 56777776543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=457.12 Aligned_cols=280 Identities=22% Similarity=0.249 Sum_probs=239.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc-c-CCCC---CCCCCcccEEEEE
Q 018040 46 GVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIE-A-SRPN---CSWPSQGEVDIHG 120 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~~i~~~~ 120 (362)
+.++.+.+..++.|...+..++..+...+..++++..+++|+.++++.+++++...+ . .... ......+.|+++|
T Consensus 263 ~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (555)
T TIGR01194 263 ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEE
Confidence 567888777788888888888999999999999999999999999763222111000 0 0000 0011235799999
Q ss_pred EEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 121 LQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 121 l~~~y~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
|+|+|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++..++|+.++||+
T Consensus 343 v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 422 (555)
T TIGR01194 343 VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIF 422 (555)
T ss_pred EEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEc
Confidence 99999753 235999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEe
Q 018040 198 QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277 (362)
Q Consensus 198 Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLD 277 (362)
|++.+|++|+++|.. ...++++++++++.+++++++..+|+|++|. .+||||||||++||||++++|+++|||
T Consensus 423 q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 423 ADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred cChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999963 3456788999999999999999999999884 789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH-hh-cCCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 278 EATASVDTATDNLIQHTLG-QH-FSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 278 EPts~LD~~~~~~i~~~l~-~~-~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
||||+||+++++.+.+.+. .. .+++|+|+||||++.+..||+|++|++|++++.-
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999988664 33 3589999999999998889999999999998753
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-57 Score=424.89 Aligned_cols=236 Identities=35% Similarity=0.642 Sum_probs=219.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++...+|++|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 589999999997544569999999999999999999999999999999999998 7899999999998888888999999
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|+||++.+|++|+++|+.+.....+++++++++.+++.+.++.+|.++++.++++|.+||||||||++||||++++|+|+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999765556678899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||||||++||+.+++.+++.|++..+++|||+|||+++.+..||||++|++|++++.|+|++++++ .+.|++++.+.
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 237 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPS 237 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhc
Confidence 999999999999999999999987778999999999999988999999999999999999999986 46677777543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-56 Score=498.72 Aligned_cols=290 Identities=21% Similarity=0.291 Sum_probs=253.3
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..+.++++.+..++++...+..++..++..+..+.++.++++|+.++++.++.... .. ++. .+..+.|+++|++|
T Consensus 548 ~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~---~~-~~~-~~~~~~I~~~nvsf 622 (1622)
T PLN03130 548 LGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL---PN-PPL-EPGLPAISIKNGYF 622 (1622)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cC-Ccc-cCCCCceEEEeeEE
Confidence 46778888887777777777788888888999999999999999999975433111 00 100 11234699999999
Q ss_pred EeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 124 RYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 124 ~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+ |++|+||+|+|+
T Consensus 623 ~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~ 689 (1622)
T PLN03130 623 SWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSW 689 (1622)
T ss_pred EccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccc
Confidence 99753 3469999999999999999999999999999999999999999 99974 457999999999
Q ss_pred CCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 202 MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 202 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
+|++|++|||.++.++++++++++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+|||||||
T Consensus 690 LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptS 769 (1622)
T PLN03130 690 IFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769 (1622)
T ss_pred cCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH-HHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 282 SVDTATDNLIQ-HTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 282 ~LD~~~~~~i~-~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
+||+++++.+. ++++...+++|+|+|||+++.+..||+|++|++|+|++.|++++++++ .+.|.+++...
T Consensus 770 ALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l~~~~ 840 (1622)
T PLN03130 770 ALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKLMENA 840 (1622)
T ss_pred ccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHHHHhc
Confidence 99999988775 566666678999999999999999999999999999999999999875 56677776543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-57 Score=416.52 Aligned_cols=221 Identities=24% Similarity=0.371 Sum_probs=194.3
Q ss_pred cEEEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HH
Q 018040 115 EVDIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~ 188 (362)
.|++++|++.|... ...+|+||||+|++||++||||+||||||||++++.+|..|++|+|.+||.++..++. +.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 37899999999862 2468999999999999999999999999999999999999999999999999887764 45
Q ss_pred HhcCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
.|++||+|||++.|++ .||.+|+.+.- ..+ ..++.+.++.+||.++.++. +.+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhH
Confidence 6789999999999997 59999998632 222 34566778888887665554 45679999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+|||||+.+|+|||.|||||+|||++.+.|.++|++.. -|.||++|||.|+.++. ||||.||++|+|+|.|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999998864 47899999999999999 999999999999999999999
Q ss_pred hhcCCcHHH
Q 018040 338 LENKSSSFA 346 (362)
Q Consensus 338 ~~~~~~~~~ 346 (362)
+.+|.....
T Consensus 230 F~~Pk~~~t 238 (339)
T COG1135 230 FANPKHAIT 238 (339)
T ss_pred hcCcchHHH
Confidence 998754443
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=406.99 Aligned_cols=221 Identities=26% Similarity=0.425 Sum_probs=196.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+|+|||++|++. .+++|+||+|++||+++++|||||||||+||+|.|+++|++|+|+|||+++++++..++|++||
T Consensus 1 MI~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 37899999999854 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||-|...||+. ||.|||.... ..+ ++++.+.++.++|.+. .+..+.+.+|||||+|||.+|||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------~~~~RyP~eLSGGQQQRVGv~RA 149 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------EYADRYPHELSGGQQQRVGVARA 149 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------HHhhcCchhcCcchhhHHHHHHH
Confidence 99999999975 9999997532 222 4566778888888631 12334456679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++++||||+++|||.++..+++.+.+.. -++|||+||||++++.. +|||.+|++|+|+..++|++++.+|..
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan 229 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccH
Confidence 999999999999999999999999999998754 37999999999999877 999999999999999999999999876
Q ss_pred HHH
Q 018040 344 SFA 346 (362)
Q Consensus 344 ~~~ 346 (362)
.|-
T Consensus 230 ~FV 232 (309)
T COG1125 230 DFV 232 (309)
T ss_pred HHH
Confidence 553
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-54 Score=465.81 Aligned_cols=311 Identities=21% Similarity=0.333 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 018040 22 CFHIDMLSSIIFVFSLFFIIS-VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLV 100 (362)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~ 100 (362)
...+......++.++.+.... ...+.+++..+...+++...+..++..++..+..+.++.+|++|+.+|+..++..+..
T Consensus 427 ~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~ 506 (1381)
T KOG0054|consen 427 NSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDS 506 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 333333444333333333333 3345677777778888888888888889999999999999999999999765432211
Q ss_pred cccCCCCCCCCCcccEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 018040 101 IEASRPNCSWPSQGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI 179 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~ 179 (362)
.. . ....+....++++|.+|+|++. ..+.|+||||+|++|+.+||||+.||||||||.+|+|.++..+|+|.++|
T Consensus 507 ~~--~-~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g- 582 (1381)
T KOG0054|consen 507 VE--R-SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG- 582 (1381)
T ss_pred cc--c-CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-
Confidence 11 0 1122334569999999999863 33489999999999999999999999999999999999999999999998
Q ss_pred eCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 180 DISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 180 ~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.++||||.||++++||||||.|+.++++++++++++.|.|.++++.+|.|..|.+||+|.+|||||||
T Consensus 583 ------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKq 650 (1381)
T KOG0054|consen 583 ------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQ 650 (1381)
T ss_pred ------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLI-QHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i-~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
||+||||++++++|++||.|+|++|.++.+.+ .++++...++||+|+|||.++.+..||+|++|++|+|.+.|+++|++
T Consensus 651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence 99999999999999999999999999987766 45565667889999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHH
Q 018040 339 ENKSSSFAQLV 349 (362)
Q Consensus 339 ~~~~~~~~~~~ 349 (362)
+. +..|.++.
T Consensus 731 ~~-~~~~~~l~ 740 (1381)
T KOG0054|consen 731 KS-GGDFAELA 740 (1381)
T ss_pred hc-chhHHHHh
Confidence 75 56677664
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-56 Score=389.32 Aligned_cols=221 Identities=26% Similarity=0.420 Sum_probs=199.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-----cEEEECCEeCCCC--CH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-----GLIAIDGIDISSI--GL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-----G~I~i~g~~i~~~--~~ 186 (362)
..++++||++.|+.. .+|+|||++|++++++|++|||||||||||+++.++.+... |+|.++|++|.+. +.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 358999999999865 59999999999999999999999999999999999998765 9999999999764 57
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.++|++||+|||.|..|+.|++||+.++.+ .-++.++++|+.+.||+.+.. .+++.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 789999999999999999999999987432 124567888999999876543 456678889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|+||||||+.+|++||||||||+|||.+...|.+++.+++++-|||+|||++..+.+ +|+..++..|+++|.|+.++++
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999888999999999999998 9999999999999999999999
Q ss_pred hcCCc
Q 018040 339 ENKSS 343 (362)
Q Consensus 339 ~~~~~ 343 (362)
.+|..
T Consensus 237 ~~P~~ 241 (253)
T COG1117 237 TNPKH 241 (253)
T ss_pred cCccH
Confidence 98753
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=438.30 Aligned_cols=262 Identities=19% Similarity=0.241 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeee
Q 018040 56 AVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRG 135 (362)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~ 135 (362)
+..+...+..++..+...+..++.+..+.+|+.++++.+++++. . ...+ .+..+.++++|++|+|+++ +++|+|
T Consensus 268 ~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~-~~~~--~~~~~~i~~~~v~f~y~~~-~~~l~~ 341 (547)
T PRK10522 268 YSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--P-RPQA--FPDWQTLELRNVTFAYQDN-GFSVGP 341 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--c-cccc--cCcCceEEEEEEEEEeCCC-CeEEec
Confidence 33333445566777788888999999999999998754432211 0 1111 1112469999999999754 359999
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 215 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 215 (362)
+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++++||||++.+|++|+++| ..
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~ 418 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK 418 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 23
Q ss_pred CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 018040 216 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295 (362)
Q Consensus 216 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l 295 (362)
..++++++++++.+++.+.+.. +++. .+|.+||||||||++||||++++|++||||||||+||+++++.+.+.+
T Consensus 419 ~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 419 PANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492 (547)
T ss_pred chHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4567788888998888765542 2221 147899999999999999999999999999999999999999999988
Q ss_pred Hhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 296 GQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 296 ~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
.+.. +++|+|+||||++.+..||+|++|++|++++..
T Consensus 493 ~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 493 LPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 7543 479999999999998889999999999999873
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-55 Score=400.80 Aligned_cols=213 Identities=29% Similarity=0.431 Sum_probs=189.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|++||+++.+++..++.+++|
T Consensus 2 ~L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 48899999999854 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHhhcCcCC--------C---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTM-FEGSVHNNLDPLE--------E---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l-~~~tv~enl~~~~--------~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
||||.+.. +..||+|-+.+++ . .+.+.+.++++.+++.++.++. ..+||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 99999754 4559988775321 1 1233577889999887765543 3457999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+++|++|+|||||++||..++.++++.++++. +++|+|+|+||++.+.+ ||++++|++|+++..|+|++++.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999865 47999999999999887 99999999999999999999987
Q ss_pred c
Q 018040 340 N 340 (362)
Q Consensus 340 ~ 340 (362)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 5
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-54 Score=414.22 Aligned_cols=228 Identities=24% Similarity=0.383 Sum_probs=200.0
Q ss_pred CCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC
Q 018040 109 SWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS 183 (362)
Q Consensus 109 ~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~ 183 (362)
.||..+.|+++|++++|.+..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 477788999999999997544569999999999999999999999999999999999996 579999999999863
Q ss_pred --CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CCCHHH-----HHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 184 --IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYADEE-----IWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 184 --~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~~~~~-----~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
.+...+|+.++|+||+|++|++|+++|+.+.. ...+++ +..+++.+++.+ ++++.+++++.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccC
Confidence 34456788999999999999999999998532 122222 455677777643 3457788999999
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988778999999999999988 9999999999999999
Q ss_pred ChhHHhhcCCc
Q 018040 333 SPTRLLENKSS 343 (362)
Q Consensus 333 ~~~~l~~~~~~ 343 (362)
++++++..+..
T Consensus 307 ~~~~l~~~~~~ 317 (329)
T PRK14257 307 ETKTIFIHPKN 317 (329)
T ss_pred CHHHHhcCCCc
Confidence 99999886543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-54 Score=383.47 Aligned_cols=223 Identities=26% Similarity=0.420 Sum_probs=193.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 190 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 190 (362)
..|++++|+++|++. .+++||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.++.+.+.+ ++|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 369999999999865 599999999999999999999999999999999999999999999999999888764 468
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcC----CCCCHHHHH----HHHHHcCCChH-HHhccccchhhhccCCCCCChhHHHH
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPL----EEYADEEIW----EALDKCQLGNE-VRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~~~~~~----~~l~~~~l~~~-~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+++|++||+..||+. ||+||+.+. ....+..++ .-++.+||... .+.+ +.+|||||++|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chhhcchHHHH
Confidence 899999999999975 999999863 223444433 34667777665 3433 45579999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
++||||++.||+|+++||||+||||.+...+.++++++.+ +.|+++||||++.+.. ||||+++.+|+|+..|+++++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987653 7899999999999998 999999999999999999999
Q ss_pred hhcCCcHHHHHH
Q 018040 338 LENKSSSFAQLV 349 (362)
Q Consensus 338 ~~~~~~~~~~~~ 349 (362)
.+.++...++++
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 987665555544
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=466.33 Aligned_cols=290 Identities=22% Similarity=0.336 Sum_probs=249.4
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEe
Q 018040 46 GVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRY 125 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y 125 (362)
+.++++.+..++++...+..++..++..+..+.++.+|.+|+.+|++.+++.+..... ........+.++++|++|+|
T Consensus 569 ~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~ 646 (1522)
T TIGR00957 569 NILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER--RTIKPGEGNSITVHNATFTW 646 (1522)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc--cccCCCCCCcEEEEEeEEEc
Confidence 4566776666666666777788888999999999999999999999765432110000 00000112369999999999
Q ss_pred CCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc
Q 018040 126 APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205 (362)
Q Consensus 126 ~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 205 (362)
++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|++|++
T Consensus 647 ~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 647 ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQND 713 (1522)
T ss_pred CCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCC
Confidence 76545699999999999999999999999999999999999999999999987 49999999999999
Q ss_pred cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 206 tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
|++||+.+....++++++++++.+++.+++..+|.|++|.++++|.+||||||||++||||++++|+++|||||||+||+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999998766777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh---hcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 286 ATDNLIQHTLGQ---HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 286 ~~~~~i~~~l~~---~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
.+++.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++.++ .+.|.+++..
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~ 861 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAEFLRT 861 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHHHHHh
Confidence 999999998853 3467999999999999989999999999999999999999875 4567776653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=389.34 Aligned_cols=233 Identities=29% Similarity=0.474 Sum_probs=207.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|+...+++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999877776677888999
Q ss_pred EcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+||++.+|+.|+.+|+.+... .....+.+.++..++.+.+..++.++++.++.++.+|||||||||+|||||+.+|+++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999998899999976432 3345566677778888888888888888888999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 349 (362)
||||||++||+.+++.+.+.|++..+++|||++||+++.+..||++++|++|++++.|++++++++ .+.|..++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 999999999999999999999987678999999999999977999999999999999999999876 44555543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=392.39 Aligned_cols=239 Identities=51% Similarity=0.806 Sum_probs=215.7
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
..+.++++|++++|++....+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35679999999999764346999999999999999999999999999999999999999999999999998877777888
Q ss_pred CcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 192 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
.++|++|++.+|+.|+++|+.+......+.++++++.+++.+.++.++.++++.+++.+.+||||||||++|||||+++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999764333455677888888998888888889999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
++|||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+.....|.+++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 9999999999999999999999998876789999999999999889999999999999999999998765556666553
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=403.65 Aligned_cols=216 Identities=25% Similarity=0.407 Sum_probs=193.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++.. +++++||+|++||+++|+|||||||||||++|+||.+|++|+|+|+|.+++++++.+ |+||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999998643 899999999999999999999999999999999999999999999999999988764 7899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+|||++.||+. ||++|+.|.-. ..++++.++++.+++.+.+++.| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999975 99999987422 22566778888888776666555 4569999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+++|++++||||+|+||++.+..+...|+++.+ +.|+|.||||..++.. +|||.||++|+|.+.|+|.|+.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999987543 6899999999998887 999999999999999999999988765
Q ss_pred HH
Q 018040 344 SF 345 (362)
Q Consensus 344 ~~ 345 (362)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 55
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=387.18 Aligned_cols=209 Identities=27% Similarity=0.385 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.+...... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999865 49999999999999999999999999999999999999999999999987654321 46799
Q ss_pred EEcCCC---CCCcccHHhhcCcCC-----------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 195 IIPQDP---TMFEGSVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 195 ~v~Q~~---~l~~~tv~enl~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
||||.. +-|+.||+|-+.... ..+.+++.++|+++++.++.++.. .+|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i-----------~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI-----------GELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc-----------cccCcHHHHH
Confidence 999966 347789999875421 123478899999999887655433 4579999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|.|||||+++|++|+|||||+|+|+.++..+.++|++++ +|+||++||||++.+.. +|+|+.|+ ++++..|++++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 999999999999999999999999999999999999875 48999999999999987 99999995 6788999999997
Q ss_pred hc
Q 018040 339 EN 340 (362)
Q Consensus 339 ~~ 340 (362)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=382.00 Aligned_cols=219 Identities=58% Similarity=0.958 Sum_probs=203.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754446999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|+||++.+++.|+++|+.+......+++.++++.+++.+.+.+++.++++.+++.+.+||+|||||++|||||+.+|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999989999999876555667788889999999999998999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
||||||++||+.+++.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999998766789999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=406.52 Aligned_cols=217 Identities=23% Similarity=0.370 Sum_probs=193.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++||+++|++ ..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+++..++++ +|.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 36999999999984 3699999999999999999999999999999999999999999999999999998875 5789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCCC----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|+|||+..||+ .||++|+.|.-. .. .+++.++++.+++.++..+.|. +|||||+||||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 99999999996 599999987432 12 3477888999988776666554 5699999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+.+|++||||||.|+||.+-+..++..+++.. .|.|.|+||||-+++.. +|||+||++|+|...|+|+|+...|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999888753 47999999999988877 9999999999999999999999987
Q ss_pred CcHH
Q 018040 342 SSSF 345 (362)
Q Consensus 342 ~~~~ 345 (362)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 6555
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=379.50 Aligned_cols=194 Identities=27% Similarity=0.367 Sum_probs=172.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++++++.|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999987 3699999999999999999999999999999999999999999999999987433 35799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCCC-------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEEY-------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.||+- ||++|+.+.-.. ..+.+.+.++.+||.++.++.|. +|||||||||+||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999986 999999764221 23467788999998877766654 569999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
|+.+|++|+||||+++||+.|+..+++.+.+.. .++||++||||++++-. +|||++|.++
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999998754 46999999999999887 9999999994
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=404.62 Aligned_cols=219 Identities=26% Similarity=0.380 Sum_probs=189.5
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 018040 116 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 190 (362)
|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998776543 57
Q ss_pred cCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++|+|+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.+..++ .+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 78999999999986 59999997421 122 2446677888887665443 34568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++||||||||+||+.++..+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998643 7899999999999987 99999999999999999999987
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
++...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 654444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=376.22 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=174.6
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H-
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L- 189 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~- 189 (362)
++++|+++.|..+. ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.++..++..+ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996542 35899999999999999999999999999999999999999999999999998887543 4
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCc---CCCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDP---LEEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
|++||||||+..|++. |++||+.. .... ..+.....++.+|+.+... ...+.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 4569999999999875 99999973 1111 2344566677777765443 133556899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIE 329 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~ 329 (362)
||||||+.+|++++.||||++||.++.+.+++++.+.. .++|+|+||||...+..|||++.|++|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999874 478999999999999999999999999954
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-52 Score=381.92 Aligned_cols=225 Identities=32% Similarity=0.483 Sum_probs=203.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543359999999999999999999999999999999999999999999999999877666677888999
Q ss_pred EcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+||++.+|+.|++||+.+... ....++.+.++..++.+.++.++.++++..+.++.+||||||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998999999976432 3445566677778888888888878888888899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||||++||+.+++.+.+.|++..++.|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 999999999999999999999987778999999999999988999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=374.23 Aligned_cols=227 Identities=27% Similarity=0.371 Sum_probs=191.1
Q ss_pred cEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhc
Q 018040 115 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~ 191 (362)
.++++|+++.|+.+. .++|++|||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999998653 14899999999999999999999999999999999999999999999998775543 235677
Q ss_pred CcEEEcCCCCC--Cc-ccHHhhcCc-CC----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 192 RLSIIPQDPTM--FE-GSVHNNLDP-LE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 192 ~i~~v~Q~~~l--~~-~tv~enl~~-~~----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
.+-+|||||.- -+ .||++-|.- .. ....+++.++++.+|+.+. ++.+++.+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~----------~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS----------FLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH----------HHhcCchhcChhHHHHHHH
Confidence 89999999953 23 377776631 11 1234558899999998643 3344556689999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||.-+|++||||||||+||...+..|++.+.+..+ +.|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999988654 5699999999999999 999999999999999999999988
Q ss_pred CCcHHHHHHHH
Q 018040 341 KSSSFAQLVAE 351 (362)
Q Consensus 341 ~~~~~~~~~~~ 351 (362)
+...|.+.+.+
T Consensus 233 ~~h~ytr~Ll~ 243 (252)
T COG1124 233 PSHPYTRELLE 243 (252)
T ss_pred CccHHHHHHHH
Confidence 66677665543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=378.92 Aligned_cols=225 Identities=36% Similarity=0.566 Sum_probs=204.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999743 25999999999999999999999999999999999999999999999999987777677788899
Q ss_pred EEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|+||++.+|+.|+++|+.+... ....++.++++.+++.+..+.++.++++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999976532 345567778888899888888888899889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+||||||++||+.+++.+.+.+++..+++|||++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999887668999999999999877999999999999999998887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-52 Score=371.11 Aligned_cols=221 Identities=24% Similarity=0.380 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r~ 191 (362)
.|+++||++.|+++ +.+|++|||+|++||+++|+|||||||||||++|.|+.+|++|+|.++|.++.... .+++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999755 46999999999999999999999999999999999999999999999999988776 556788
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcC------------CCCC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPL------------EEYA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~------------~~~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
++||+||++.|.+. ||.+|+..+ .-.+ .....++|+++|+.+..- .+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCCc
Confidence 99999999999865 999998431 1222 334556778887765443 34556899
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
||+|||+|||||+++|+|+|.|||+|+|||.+.+.+++.|++.. .|.|+|+..|+++.+.. ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998754 57999999999999987 9999999999999999
Q ss_pred ChhHHhhcCCcHHHHHHH
Q 018040 333 SPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 333 ~~~~l~~~~~~~~~~~~~ 350 (362)
++.|+-+. .+.+.|.
T Consensus 231 ~~~el~~~---~~~~iYg 245 (258)
T COG3638 231 PASELTDE---ALDEIYG 245 (258)
T ss_pred ChhhhhHH---HHHHHhc
Confidence 99996332 3444443
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=378.05 Aligned_cols=232 Identities=33% Similarity=0.544 Sum_probs=207.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 359999999999999999999999999999999999999999999999999987777777888999
Q ss_pred EcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+||++.+|+.|+++|+.+.. ......+.+.++.+++.+.+..++.++++.+++++.+||||||||++|||||+++|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 23455567778888888888888888999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 349 (362)
||||||++||+.+.+.+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+++++..+ .+.+..++
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~ 233 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMW 233 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHH
Confidence 999999999999999999999887668899999999999978999999999999999999988765 44454443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=361.94 Aligned_cols=207 Identities=25% Similarity=0.311 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 191 (362)
.|+|+||+++|++. +++|+||||+|++||++-|+||||||||||+|+|++..+|++|+|.++|.|+..+..+ -+|+
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 37899999999987 6799999999999999999999999999999999999999999999999999887654 4799
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC-------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
+||+||||..|... ||.||+.+.- ....+++.++|+.+||.+....+|.. |||||+|||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~-----------LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ-----------LSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc-----------cCchHHHHHHH
Confidence 99999999988754 9999997632 12356788899999999888877765 59999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||++.+|++||.||||.+|||.....|++++.+.. .|.||+++|||.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999865 58999999999999998 57899999999987654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=379.51 Aligned_cols=214 Identities=29% Similarity=0.445 Sum_probs=191.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC-CCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS-SIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~-~~~~~~~r~~i 193 (362)
.++++|++|+|++. .++|+++||+|++||+++|+|+||||||||+++++|+++|++|+|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58899999999876 57999999999999999999999999999999999999999999999999987 36677899999
Q ss_pred EEEcCCC--CCCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDP--TMFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~--~l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|||+|+| .+|..||.+.+.|... .. ++++.++++.+++.+..++ .+.+||||||||||||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHhh
Confidence 9999999 6788899999987532 22 3556778888888765444 4456799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
.+|+.+|++||||||||+||+..++.+.+.++++.+ ++|+|++|||++.+.. |||+++|++|+++.+|+|++++++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999998753 4899999999999988 999999999999999999999876
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=372.79 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=195.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48999999999753346999999999999999999999999999999999999999999999999987666666778899
Q ss_pred EEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|+||++.+|+.|+.||+.+... ...+++.+.++.+++.+.++..|.++++.+.....+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888899999976432 345567788889999888888888999888888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
|||||||++||+.++..+.+.|++..+++|||++||+++.+..||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999876568999999999987669999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=378.42 Aligned_cols=212 Identities=27% Similarity=0.413 Sum_probs=182.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~ 192 (362)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 4689999999753 59999999999999999999999999999999999999999999999999876653 456788
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
++|+||++.+|+. |+++|+.+.. ... .+++.++++.+++.+.. .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 9999999998875 9999996531 112 23455667777765433 33445689999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||+.+|++|||||||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999999998864 37899999999999887 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-51 Score=376.42 Aligned_cols=225 Identities=32% Similarity=0.571 Sum_probs=201.2
Q ss_pred EEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 116 VDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753 236999999999999999999999999999999999999999999999999987666666777899
Q ss_pred EEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|+||++.+++.|+++|+.+.. ....+++.+.++..++.+.+..++.++++.+...+.+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988889999997643 2334556667777888888888888888888889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887677999999999999878999999999999999999888765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=396.43 Aligned_cols=217 Identities=21% Similarity=0.355 Sum_probs=188.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. +++||
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 3599999999999999999999999999999999999999999999999999877653 47899
Q ss_pred EEcCCCCCCc-ccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+ .||++|+.+... .. .+++.++++.+++.++.++. +.+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRK-----------PRELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999996 599999976321 22 24466778888876555444 45679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+.+++.+.+.|++..+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987643 7899999999998877 999999999999999999999887654
Q ss_pred HH
Q 018040 344 SF 345 (362)
Q Consensus 344 ~~ 345 (362)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 44
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=366.70 Aligned_cols=207 Identities=58% Similarity=0.977 Sum_probs=182.4
Q ss_pred CCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH
Q 018040 110 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 110 ~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~ 189 (362)
||..+.++++|++++|+....++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 56667899999999997543469999999999999999999999999999999999999999999999999877777777
Q ss_pred hcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
++.++|+||++.+|+.|+++|+.+......+++.++++ +++++.+|||||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 88999999999999899999997654333333333332 245677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecCh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~ 334 (362)
+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987668999999999999877999999999999988764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=374.58 Aligned_cols=211 Identities=30% Similarity=0.491 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCEeCCCCC--HHH
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-----EPTAGLIAIDGIDISSIG--LHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-----~p~~G~I~i~g~~i~~~~--~~~ 188 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999753 5999999999999999999999999999999999999 999999999999987665 455
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCCC---C-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++++++|+||++.+|..|++||+.+... . .++++.++++.+++.+.....+. +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 6788999999999887799999965211 1 12455677777777654433210 46789999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987544899999999999887 999999999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=379.26 Aligned_cols=216 Identities=25% Similarity=0.388 Sum_probs=189.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---eCCCCCHHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI---DISSIGLHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~---~i~~~~~~~~r~ 191 (362)
+|+++++++.|+.. .+++|||++|+.||.+|+.|||||||||||++|+|+..|++|.|.++|+ |.+... ...+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhc
Confidence 47889999999865 5899999999999999999999999999999999999999999999999 555433 2346
Q ss_pred CcEEEcCCCCCCc-ccHHhhcCcCCC---------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 192 RLSIIPQDPTMFE-GSVHNNLDPLEE---------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 192 ~i~~v~Q~~~l~~-~tv~enl~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+||||||++.+|+ .||.+||.|+-+ ..+.++.+.|+.++|...-++.| .+|||||||||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 7999999999985 699999988531 23456777888888876655554 56799999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
||||||+.+|++||||||+++||.+.++.+...|++.. -+.|+++||||.+++.. ||||++|++|+|...|+|+|++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999998854 37899999999999988 9999999999999999999999
Q ss_pred hcCCcHH
Q 018040 339 ENKSSSF 345 (362)
Q Consensus 339 ~~~~~~~ 345 (362)
..|.+.|
T Consensus 227 ~~P~s~f 233 (345)
T COG1118 227 DHPASRF 233 (345)
T ss_pred cCCCccc
Confidence 9887665
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=444.26 Aligned_cols=280 Identities=22% Similarity=0.351 Sum_probs=235.2
Q ss_pred cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeC
Q 018040 48 VDPAIAGLAVTFGLNLNMLQ-ASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYA 126 (362)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~ 126 (362)
.+++.+..++++...+..++ ..++..+..+.++.+|++||.+|+..++.... ... .....++++|++|.|+
T Consensus 332 ~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~-----~~~---~~~~~i~~~~~~f~~~ 403 (1490)
T TIGR01271 332 IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL-----EYN---LTTTEVEMVNVTASWD 403 (1490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-----ccc---CCCCceEEecceEecC
Confidence 45555554555555554444 35778888999999999999999976543210 000 1123488888888884
Q ss_pred CC--------------------------------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 127 PH--------------------------------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 127 ~~--------------------------------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i 483 (1490)
T TIGR01271 404 EGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI 483 (1490)
T ss_pred CccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 21 1358999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 175 AIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 175 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
.++| +|+|++|+|++|++|++|||.+...++.+++.++++.+++.+++..+|.+.+|.++++|.+||
T Consensus 484 ~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LS 550 (1490)
T TIGR01271 484 KHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLS 550 (1490)
T ss_pred EECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcC
Confidence 9988 499999999999999999999766666667788889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT-LGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
|||||||+||||++++|+++|||||||+||+.+++.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 551 gGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGT 630 (1490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999874 666667899999999999998899999999999999999
Q ss_pred hhHHhhcCCcHHHHHH
Q 018040 334 PTRLLENKSSSFAQLV 349 (362)
Q Consensus 334 ~~~l~~~~~~~~~~~~ 349 (362)
++++... +..|.+.+
T Consensus 631 ~~~l~~~-~~~~~~~~ 645 (1490)
T TIGR01271 631 FSELQAK-RPDFSSLL 645 (1490)
T ss_pred HHHHHhc-ChHHHHHH
Confidence 9999865 34565554
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=393.22 Aligned_cols=217 Identities=25% Similarity=0.389 Sum_probs=189.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 5 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred cEEEEEeEEEEECCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 369999999999753 58999999999999999999999999999999999999999999999999987654 35789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+||||++.+|+. |++||+.+... .. .+++.++++.+++.+..+ +.+.+|||||||||+|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999999975 99999976321 12 345667778877755443 345668999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|++++++.++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988643 7899999999999877 99999999999999999999988776
Q ss_pred cHH
Q 018040 343 SSF 345 (362)
Q Consensus 343 ~~~ 345 (362)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 544
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=393.26 Aligned_cols=216 Identities=24% Similarity=0.378 Sum_probs=188.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.++
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 59999999999753 589999999999999999999999999999999999999999999999999876643 57899
Q ss_pred EEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+ .|++||+.+.. ..+ .+++.++++.+++.+..+ +.+.+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999996 59999997632 111 345667777777765444 4455689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|+++|||||||+||+.+++.+.+.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987643 7899999999999877 999999999999999999999987655
Q ss_pred HH
Q 018040 344 SF 345 (362)
Q Consensus 344 ~~ 345 (362)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 54
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=373.20 Aligned_cols=222 Identities=25% Similarity=0.409 Sum_probs=191.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.++++|+++.|++. ++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+...+|+
T Consensus 2 ~~~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGKK--QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECCE--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 47899999999753 59999999999999999999999999999999999984 68999999999998777667788
Q ss_pred CcEEEcCCCCCCcccHHhhcCcCC---C------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 192 RLSIIPQDPTMFEGSVHNNLDPLE---E------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~tv~enl~~~~---~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
.++|+||++.+|+.|+++|+.+.. . ..++++.++++.+++.+.+. ....+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHH
Confidence 899999999999899999996531 1 11234567788888765432 2345567889999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||||+++|+++||||||++||+.++..+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999887668999999999999876 9999999999999999999997654
Q ss_pred CcHH
Q 018040 342 SSSF 345 (362)
Q Consensus 342 ~~~~ 345 (362)
...+
T Consensus 233 ~~~~ 236 (246)
T PRK14269 233 KQEK 236 (246)
T ss_pred CcHH
Confidence 3333
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=371.80 Aligned_cols=223 Identities=30% Similarity=0.489 Sum_probs=191.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 48999999999753 5999999999999999999999999999999999999999999999999987766667788899
Q ss_pred EEcCCCCCCcccHHhhcCcCCC---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
|+||++.+|+.|+++|+.+... ...+++.++++.+++.+. ...+.+.+||||||||++||||++.+|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998899999975321 123455667777776421 223456679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|++++++..+...+.+.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHH
Confidence 9999999999999999999999998764 37899999999999887 99999999999999999999987654455554
Q ss_pred H
Q 018040 349 V 349 (362)
Q Consensus 349 ~ 349 (362)
+
T Consensus 231 ~ 231 (241)
T PRK14250 231 F 231 (241)
T ss_pred H
Confidence 4
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=391.58 Aligned_cols=220 Identities=24% Similarity=0.370 Sum_probs=187.4
Q ss_pred EEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 018040 116 VDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 190 (362)
Q Consensus 116 i~~~~l~~~y~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 190 (362)
|+++|++++|+. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2246999999999999999999999999999999999999999999999999998776543 47
Q ss_pred cCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++|+|+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.+..+ ..+.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 78999999999886 59999996531 122 234556777777654433 345668999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+++|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||||++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998864 37899999999999887 99999999999999999999987
Q ss_pred cCCcHHH
Q 018040 340 NKSSSFA 346 (362)
Q Consensus 340 ~~~~~~~ 346 (362)
.+...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 6543343
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-50 Score=389.23 Aligned_cols=216 Identities=23% Similarity=0.379 Sum_probs=187.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. .+++++
T Consensus 2 ~L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 38899999999753 59999999999999999999999999999999999999999999999999976543 357899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.+|+. |++||+.+... .. .+++.++++.+++.+..+ .++.+|||||||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 99999999974 99999975321 12 235566777777755443 345568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|++++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988643 6899999999999887 99999999999999999999988
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 765444
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=385.26 Aligned_cols=213 Identities=25% Similarity=0.383 Sum_probs=184.0
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~~--~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECCe--EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 369999999999753 5999999999999999999999999999999999999999999999999986543 3568889
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||+||++.+++ .|++||+.+... .. .+++.++++.+++.+.. +....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHHHHH
Confidence 99999999886 599999975321 12 23345666777665433 2334568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+++|++|||||||+|||+.+++.+.+.++++. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999865 47999999999999987 999999999999999999998654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=372.15 Aligned_cols=223 Identities=27% Similarity=0.397 Sum_probs=189.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 69999999999753 599999999999999999999999999999999999997 48999999998753 2334
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|++||+.+... .. ++.+.++++.+++.+.+ .......+.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHHH
Confidence 56788999999999888899999975311 11 23456667777764322 22334567889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999877 9999999999999999999998
Q ss_pred hcCCcHHH
Q 018040 339 ENKSSSFA 346 (362)
Q Consensus 339 ~~~~~~~~ 346 (362)
+++...|.
T Consensus 238 ~~~~~~~~ 245 (254)
T PRK14273 238 FNPKNTKT 245 (254)
T ss_pred hCCCChHH
Confidence 76554443
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=390.83 Aligned_cols=217 Identities=23% Similarity=0.385 Sum_probs=188.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--cEEEECCEeCCCCCHHHHhc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA--GLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~--G~I~i~g~~i~~~~~~~~r~ 191 (362)
+.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+. .++
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 469999999999753 59999999999999999999999999999999999999999 999999999976654 357
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
.|+||||++.+|+. |+++|+.+.. ... .+++.++++.+++.+..++. +.+|||||||||+|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHHHH
Confidence 89999999999965 9999997531 122 23466777777776554444 45679999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC---CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS---DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
||||+.+|++|||||||++||+.++..+.+.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|++++++.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999987543 6899999999999877 99999999999999999999998
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
++...|
T Consensus 229 ~p~~~~ 234 (362)
T TIGR03258 229 APADGF 234 (362)
T ss_pred CcCcHH
Confidence 765444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=371.92 Aligned_cols=219 Identities=25% Similarity=0.425 Sum_probs=187.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~~ 187 (362)
.|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 59999999999753 59999999999999999999999999999999999974 589999999999864 2344
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+.. .. ..+++.++++.+++.+.+. ..+++.+.+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHH
Confidence 5678899999999998889999996421 11 1344566777777754322 2345667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999997
Q ss_pred hcCC
Q 018040 339 ENKS 342 (362)
Q Consensus 339 ~~~~ 342 (362)
+.+.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 6543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=369.17 Aligned_cols=213 Identities=23% Similarity=0.374 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGDF--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECCE--EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 37899999999753 59999999999999999999999999999999999999999999999999865442 256799
Q ss_pred EEcCCCCCCc-ccHHhhcCcCCC---C----C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLEE---Y----A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~~---~----~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.+|+ .|+++|+.+... . . .+++.++++.+++.+.. +..+.+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999886 599999975311 1 1 12345566666664433 3345678999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.|.+.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999999998864 37899999999998877 99999999999999999999876
Q ss_pred cCC
Q 018040 340 NKS 342 (362)
Q Consensus 340 ~~~ 342 (362)
.+.
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=378.96 Aligned_cols=215 Identities=26% Similarity=0.384 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCC--CCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~--l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++. ++..|+++|+.+.. ... .+++.++++.+++.+..++ .+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKER-----------EPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999983 45679999997532 122 2446677787777554433 3457899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|++|||||||++||+.+++.+.+.+++.. .++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998864 37999999999999867999999999999999999988754
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-50 Score=390.30 Aligned_cols=217 Identities=25% Similarity=0.376 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+
T Consensus 13 ~~L~l~~l~~~~~~~--~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 359999999999753 589999999999999999999999999999999999999999999999999776643 5789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+||||++.+|+. ||+||+.+... .. .+++.++++.+++.+..++.| .+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999976321 12 234567778787766555444 567999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
||+.+|++|||||||++||+.++..+.+.|++.. .+.|+|+|||+++++.. ||||++|++|+|++.|+++++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 9999999999999999999999999999998864 37899999999999877 99999999999999999999998765
Q ss_pred cHH
Q 018040 343 SSF 345 (362)
Q Consensus 343 ~~~ 345 (362)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=383.87 Aligned_cols=218 Identities=23% Similarity=0.344 Sum_probs=184.4
Q ss_pred cccEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC-----
Q 018040 113 QGEVDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----- 184 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----- 184 (362)
...|+++|++|+|++.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34699999999997531 3599999999999999999999999999999999999999999999999988642
Q ss_pred -----------CHHHHhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCHH----HHHHHHHHcCCChHHHhccccchh
Q 018040 185 -----------GLHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYADE----EIWEALDKCQLGNEVRKNEGKLES 244 (362)
Q Consensus 185 -----------~~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~ 244 (362)
....+|++++||||++ .+|+.|+++|+.+.. ....+ ++.++++.+++. +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~----------~~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD----------DS 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC----------hh
Confidence 2446788999999998 688889999997532 12222 233445555543 13
Q ss_pred hhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEE
Q 018040 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLL 322 (362)
Q Consensus 245 ~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~v 322 (362)
..++.+.+||||||||++|||||+++|++|||||||++||+.++..+.+.|.+.. +++|||+|||+++.+.. ||||++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 4566778899999999999999999999999999999999999999999998764 57899999999998865 999999
Q ss_pred EeCCEEEEecChhHHhhc
Q 018040 323 LSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 323 l~~G~i~~~g~~~~l~~~ 340 (362)
|++|++++.|++++++..
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999988654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=370.35 Aligned_cols=221 Identities=27% Similarity=0.428 Sum_probs=188.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCCC--CHHH
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISSI--GLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~~--~~~~ 188 (362)
++++|++++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998653 3445
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+++.++|+||++.+|+.|+++|+.+.. . .. .+++.++++.+++.+.+. ...+..+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 678899999999988899999996421 1 11 234566777787763221 22345567899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
++|||||+.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987656899999999999877 99999999999999999999876
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
.+...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 544333
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=367.40 Aligned_cols=202 Identities=26% Similarity=0.348 Sum_probs=173.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~~ 192 (362)
++++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965433599999999999999999999999999999999999999999999999998665432 36778
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+ .|++||+.+.. .. ..+++.++++.+++.+..++ .+.+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 59999996421 11 23456677787777554433 3456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
|||+.+|++|||||||++||+.+++.+.+.+++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998864 47899999999999987 999999999975
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=379.98 Aligned_cols=216 Identities=28% Similarity=0.450 Sum_probs=184.5
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--HHHHh
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r 190 (362)
++++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999997532 35999999999999999999999999999999999999999999999999987643 34677
Q ss_pred cCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 191 SRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 191 ~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
++|||+||++ .+|+.|+++|+.+.. .... +++.++++.+++.. .+..+..+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 8999999998 467789999997532 1222 34566777777640 1234455678999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+|||||+.+|++|||||||++||+.++..+.+.+++.. .+.|||++||+++.+.. ||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998864 37899999999999876 9999999999999999999986
Q ss_pred hc
Q 018040 339 EN 340 (362)
Q Consensus 339 ~~ 340 (362)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=382.42 Aligned_cols=213 Identities=27% Similarity=0.443 Sum_probs=187.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|+.. ..+|+||||+|++||++|++||||||||||+|+|+|+++|++|+|.++|.+...- ..+.++++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999832 2599999999999999999999999999999999999999999999999988654 567889999
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+++. |++||+.+... ...+++.++++.+++.+.. +.....||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998865 99999976321 2246788899999987522 22345689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-C-ceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-D-CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+.+|++|||||||+||||.++..+.+.|+++.+ + +||+++||.++.++. ||||++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998754 5 799999999999998 999999999999999999987654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=369.94 Aligned_cols=212 Identities=25% Similarity=0.406 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 194 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGL--VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECCE--EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 4689999999753 59999999999999999999999999999999999999999999999999887665544 56799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC---C--------------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE---Y--------------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~---~--------------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
|+||++.+|+. |+++|+.+... . ..+.+.++++.+++. ...+..+.+||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhCCHH
Confidence 99999999876 99999864211 0 012344555555543 3344556679999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
||||++|||||+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998865 57899999999999987 999999999999999999
Q ss_pred hHHhhc
Q 018040 335 TRLLEN 340 (362)
Q Consensus 335 ~~l~~~ 340 (362)
+++..+
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 988654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=371.30 Aligned_cols=223 Identities=27% Similarity=0.433 Sum_probs=190.1
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IG 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~ 185 (362)
.+.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 3469999999999753 59999999999999999999999999999999999986 589999999999853 34
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
...+|++++|+||++.+|+.|+++|+.+.. ... ++++.++++.+++.+.+ ...+++.+.+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 456788999999999988899999997531 112 24456677777764332 234456678899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+.+|++|||||||++||+.+++.+.+.|++..++.|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HhhcCCcH
Q 018040 337 LLENKSSS 344 (362)
Q Consensus 337 l~~~~~~~ 344 (362)
+.+.+...
T Consensus 242 ~~~~~~~~ 249 (260)
T PRK10744 242 IFTKPAKK 249 (260)
T ss_pred HHhCCCcH
Confidence 87754433
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=391.23 Aligned_cols=210 Identities=27% Similarity=0.380 Sum_probs=181.1
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hcCcEEEcCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQD 199 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~ 199 (362)
+|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...+ |++++||||+
T Consensus 2 ~~~~~--~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGGK--KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCCc--eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 45433 58999999999999999999999999999999999999999999999999998887766 6789999999
Q ss_pred CCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 200 PTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 200 ~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+.+|+. |+++|+.+... .. .+++.++++.+++.++. ++.+.+|||||||||+|||||+.+|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999975 99999975321 11 34566777777775544 3445568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFA 346 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~ 346 (362)
++|||||||++||+.+++.+++.+.+.. .++|||+|||+++++.. ||||++|++|++++.|++++++.++...|.
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999999999998763 37999999999998876 999999999999999999999887654443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=365.91 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=179.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999975323599999999999999999999999999999999999999999999999998653 3456778999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+++ .|+++|+.+.. ... .+++.++++.+++.+.. .....+||||||||++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 999999884 69999986421 111 23455667777664433 333456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987667999999999999987 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=370.11 Aligned_cols=224 Identities=29% Similarity=0.427 Sum_probs=190.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~~~ 189 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 48999999999753 599999999999999999999999999999999999974 69999999999987777778
Q ss_pred hcCcEEEcCCCCCC-cccHHhhcCcCC---C--CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 190 RSRLSIIPQDPTMF-EGSVHNNLDPLE---E--YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 190 r~~i~~v~Q~~~l~-~~tv~enl~~~~---~--~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
++.|+|+||++.++ ..|+.+|+.+.. . .. .+++.++++.+++.+.+. ......+.+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence 88999999999766 469999996421 1 01 234567778887754321 2334556789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999998
Q ss_pred hcCCcHHHH
Q 018040 339 ENKSSSFAQ 347 (362)
Q Consensus 339 ~~~~~~~~~ 347 (362)
+.+...+.+
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14247 234 TNPRHELTE 242 (250)
T ss_pred cCCccHHHH
Confidence 765444433
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-50 Score=376.71 Aligned_cols=211 Identities=27% Similarity=0.386 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 58999999999643 35999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEcCCC--CCCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDP--TMFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~--~l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++ .++..|+.+|+.+... .. .+++.++++.+++.+..++ .+.+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999998 5677899999975321 12 2345667777777554433 34568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||+.+|++|||||||++||+.++..+.+.+++.. +++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999998764 47999999999999876 999999999999999998754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=370.79 Aligned_cols=224 Identities=27% Similarity=0.404 Sum_probs=188.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCC--CCCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDIS--SIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~--~~~~~ 187 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 58999999999753 599999999999999999999999999999999999987 4999999999986 34445
Q ss_pred HHhcCcEEEcCCCCCCcc-cHHhhcCcCC---CC--C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 188 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EY--A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~--~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
.++++++|+||++.+|+. |+.+|+.+.. .. . ++++.++++.+++.+.+ .......+.+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence 677889999999999875 9999996421 11 1 23455667777764322 123455677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999877 99999999999999999999
Q ss_pred HhhcCCcHHHH
Q 018040 337 LLENKSSSFAQ 347 (362)
Q Consensus 337 l~~~~~~~~~~ 347 (362)
+.+.+...+.+
T Consensus 235 ~~~~~~~~~~~ 245 (253)
T PRK14267 235 VFENPEHELTE 245 (253)
T ss_pred HHhCCCcHHHH
Confidence 98664434443
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-50 Score=369.76 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=180.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r~~ 192 (362)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 35999999999999999999999999999999999999999999999999987665 3456788
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCCC---------------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
++|+||++.+|+ .|+++|+.+... ...+++.++++.+++.+ .....+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCHH
Confidence 999999998886 599999864210 11233455566665533 344556789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999998864 37899999999999986 99999999999999999
Q ss_pred hhHHh
Q 018040 334 PTRLL 338 (362)
Q Consensus 334 ~~~l~ 338 (362)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 98863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=368.98 Aligned_cols=220 Identities=25% Similarity=0.384 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 359999999999999999999999999999999999999999999999999887766677788999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+ .|++||+.+.. ... .+++.++++.+++.+ ....++.+.+||||||||++|||||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999996431 111 234566677777653 0123445677999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSS 344 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~ 344 (362)
+++|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+.+...
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 230 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAND 230 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCCh
Confidence 99999999999999999999999999998864 37899999999998877 9999999999999999999987654333
Q ss_pred H
Q 018040 345 F 345 (362)
Q Consensus 345 ~ 345 (362)
+
T Consensus 231 ~ 231 (242)
T cd03295 231 F 231 (242)
T ss_pred H
Confidence 3
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-50 Score=343.92 Aligned_cols=210 Identities=26% Similarity=0.361 Sum_probs=186.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
+.+++|.|+|+.. =-.++++|++||++||+||||||||||+++|+|+..|.+|+|.|+|++.+..++. ++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5678999999643 2358899999999999999999999999999999999999999999998876653 467999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC-------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||+..||. .||.+|+.++. ....+++..++.++|+..+.+++|.. |||||||||||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~-----------LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE-----------LSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc-----------cCchHHHHHHHHHHH
Confidence 999999996 49999997532 23457788899999999988888765 599999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
+++-+||+||||+|+|||.-+..+..++.+.. ++.|++||||+++.+.. +||++++++|+|.+.|+.++++....
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999998754 46899999999999988 99999999999999999999987644
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=391.45 Aligned_cols=213 Identities=26% Similarity=0.393 Sum_probs=189.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..++++++|
T Consensus 3 ~L~~~nls~~y~~~--~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 58999999999753 5999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCC-cccHHhhcCcCC-----------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMF-EGSVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~-~~tv~enl~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|++|++.++ +.|+++|+.+.. ....+.+.++++.+++.+..++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 999999874 679999986432 1123456778888888655433 34568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||||+++|++|||||||++||+.++..+++.|+++. +++|||++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999865 57899999999999977 999999999999999999998764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=371.41 Aligned_cols=224 Identities=23% Similarity=0.462 Sum_probs=189.7
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IG 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~ 185 (362)
...++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 3469999999999753 59999999999999999999999999999999999987 689999999998753 34
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCCC---CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE---YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
...+|+.++|+||++.+|+.|++||+.+... .. ++++.++++.+++... ++......+.+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence 5567888999999999988899999975321 11 2344556777665432 233456667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeC-----------CE
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-----------GL 327 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~-----------G~ 327 (362)
|++|||||+++|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. |||+++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987667899999999999987 999999996 67
Q ss_pred EEEecChhHHhhcCCcHH
Q 018040 328 IEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 328 i~~~g~~~~l~~~~~~~~ 345 (362)
+++.|+++++++.+...+
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 242 LVEFNETKKIFNSPKQKA 259 (269)
T ss_pred EEEeCCHHHHHhCcCChH
Confidence 999999999987654333
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=382.41 Aligned_cols=228 Identities=19% Similarity=0.296 Sum_probs=189.2
Q ss_pred cEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEeCCCCCHHH
Q 018040 115 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 188 (362)
.++++|+++.|+... ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999997532 359999999999999999999999999999999999997 48999999999998877655
Q ss_pred Hh----cCcEEEcCCCC--CCc-ccHHhhcC----cCCCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 189 LR----SRLSIIPQDPT--MFE-GSVHNNLD----PLEEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 189 ~r----~~i~~v~Q~~~--l~~-~tv~enl~----~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
++ +.|+||||++. +++ .|+.+++. ..... ..+++.++++.+++.+. ...++..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 43 36999999984 444 36665542 22111 23456778888887542 12344567789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
||||||||+|||||+.+|++||+||||++||+.++..+++.|+++. .+.|+|+||||++.+.. ||||++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 37899999999999976 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHHH
Q 018040 331 FDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~~~~~~ 350 (362)
.|+++++++++...|.+.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ll 254 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQALL 254 (326)
T ss_pred ECCHHHHhhCCCChHHHHHH
Confidence 99999999887777765543
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=371.18 Aligned_cols=221 Identities=24% Similarity=0.407 Sum_probs=188.7
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IG 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~ 185 (362)
.+.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECCE--EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 4579999999999753 599999999999999999999999999999999999975 89999999999864 23
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC--C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY--A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~--~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
...+|+.++|+||++.+|+.|+.+|+.+.. .. . .+++.++++.+++.+.+. ...++.+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 456778899999999999889999996421 11 1 234566777777754321 2345567789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999987667899999999999977 9999999999999999999
Q ss_pred HHhhcCC
Q 018040 336 RLLENKS 342 (362)
Q Consensus 336 ~l~~~~~ 342 (362)
++..++.
T Consensus 248 ~~~~~~~ 254 (267)
T PRK14235 248 KMFTNPD 254 (267)
T ss_pred HHHhCCC
Confidence 9876543
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=388.72 Aligned_cols=216 Identities=20% Similarity=0.310 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 48999999999753 59999999999999999999999999999999999999999999999999876554 356799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+|+. |+++|+.+.. ... .+++.++++.+++.+..+ ..+.+|||||||||+||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999965 9999997532 112 234666777777754433 3445689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++|||||||++||+.+++.+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|++++++..+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 999999999999999999999999999998764 37899999999999887 999999999999999999999877654
Q ss_pred HH
Q 018040 344 SF 345 (362)
Q Consensus 344 ~~ 345 (362)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 44
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=377.62 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=183.1
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----CCHHH
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~~ 188 (362)
|+++|++|+|+... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcCcEEEcCCC--CCCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDP--TMFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|+.++||||+| .+|..|+.+|+.+... .. .+++.++++.+++.+. ...+.+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHHH
Confidence 788999999998 6788899999975321 22 2345566777776421 223455678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|++|||||+.+|++|||||||++||+.+++.+.+.++++. +++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998764 47899999999999876 999999999999999999998
Q ss_pred hhc
Q 018040 338 LEN 340 (362)
Q Consensus 338 ~~~ 340 (362)
+..
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=381.98 Aligned_cols=226 Identities=23% Similarity=0.350 Sum_probs=190.5
Q ss_pred cEEEEEEEEEeCCC-----------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 018040 115 EVDIHGLQVRYAPH-----------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-----------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 183 (362)
.|+++||+++|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2358999999999999999999999999999999999999999999999999987
Q ss_pred CCHH---HHhcCcEEEcCCC--CCCc-ccHHhhcCcC----C-CCC----HHHHHHHHHHcCCChHHHhccccchhhhcc
Q 018040 184 IGLH---DLRSRLSIIPQDP--TMFE-GSVHNNLDPL----E-EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTE 248 (362)
Q Consensus 184 ~~~~---~~r~~i~~v~Q~~--~l~~-~tv~enl~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 248 (362)
.+.. .+|++|+||||++ .+++ .|+.+|+.+. . ... .+.+.++++.+++.+ ...+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 7654 3567899999998 4664 5999998531 1 122 233456677777632 12344
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
.+.+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++. .+.|+|+||||++.+.. ||||++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 567799999999999999999999999999999999999999999998864 37899999999999987 999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|+|++.|++++++.++...|.+.+.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~l~ 262 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKALM 262 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHHHH
Confidence 9999999999999877666766443
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=362.52 Aligned_cols=202 Identities=25% Similarity=0.369 Sum_probs=172.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 468999999975 35999999999999999999999999999999999999999999999999986544 24568999
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.++. .|+++|+.+... .. .+++.++++.+++.+..+ +.+.+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHH
Confidence 999998886 599999964211 11 234556677777654433 33456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999999877 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=374.76 Aligned_cols=215 Identities=26% Similarity=0.401 Sum_probs=186.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++||+++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754446999999999999999999999999999999999999999999999999998777667788899
Q ss_pred EEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++ .++..|+.+|+.+.. ... .+++.++++.+++.+..+.. +.+||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 355679999997531 112 23456677777776554443 4568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.++..+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999988653 7899999999999878999999999999999999887653
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=365.65 Aligned_cols=214 Identities=27% Similarity=0.385 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 190 (362)
|+++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 2599999999999999999999999999999999999999999999999998766543 346
Q ss_pred cCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
+.++|+||++.+|+ .|++||+.+.. ... .+++.++++.+++.+..+ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 78999999999987 59999986421 111 234566677776654333 344668999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|+++||||||++||+.++..+.+.+++.. + ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998864 3 7899999999999877 99999999999999999888765
Q ss_pred c
Q 018040 340 N 340 (362)
Q Consensus 340 ~ 340 (362)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=369.31 Aligned_cols=223 Identities=24% Similarity=0.386 Sum_probs=188.0
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCC--H
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIG--L 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~--~ 186 (362)
..++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 11 ~~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 369999999999743 599999999999999999999999999999999999985 7999999999886432 3
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
..+++.++|+||++.+|+.|+++|+.+.. .... +++.++++.+++.+.+ ....+..+.+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 35677899999999988899999996421 1222 2355677777664321 22345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999877 9999999999999999999998
Q ss_pred hcCCcHH
Q 018040 339 ENKSSSF 345 (362)
Q Consensus 339 ~~~~~~~ 345 (362)
+++...+
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 7654443
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=367.99 Aligned_cols=211 Identities=27% Similarity=0.386 Sum_probs=179.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~ 192 (362)
++++|++++|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999722 359999999999999999999999999999999999999999999999999876543 235778
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCCC---------------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
++|+||++.+|+ .|+++|+.+... ...+++.++++.+++.+ ..+..+.+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHH
Confidence 999999998886 599999964210 01234455566665543 334456779999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998764 37899999999999876 99999999999999999
Q ss_pred hhHHh
Q 018040 334 PTRLL 338 (362)
Q Consensus 334 ~~~l~ 338 (362)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 98863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=376.40 Aligned_cols=215 Identities=25% Similarity=0.379 Sum_probs=182.7
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----CCHHH
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~~ 188 (362)
++++|++++|++.. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997431 359999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
++++++|+||++ .+|+.|+++|+.+.. .... +.+.++++.+++.+.. ...++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 678899999997 577789999996531 1122 3455677777765221 23445678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|++|||||+.+|++|||||||++||+.++..+.+.+++.. .+.|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998864 37899999999999876 99999999999999999998
Q ss_pred Hhhc
Q 018040 337 LLEN 340 (362)
Q Consensus 337 l~~~ 340 (362)
+++.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=361.71 Aligned_cols=212 Identities=23% Similarity=0.402 Sum_probs=178.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 194 (362)
|+++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999877665544 56799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCCC--C---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEEY--A---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~~--~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
|+||++.+|+. |+++|+.+.... . .+++.++++.++ +++...+..+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999998876 999999653211 1 112233333331 1333445567789999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
.+|++|||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998765 57899999999999877 99999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=375.49 Aligned_cols=215 Identities=25% Similarity=0.381 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~ 188 (362)
++++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 3599999999999999999999999999999999999999999999999998653 2346
Q ss_pred HhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|++|||+||+| .+|+.|+.+|+.+.. .... +++.++++.+++.. ...+..+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 788999999997 577789999997532 1222 33445566665531 2234456779999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|++|||||+.+|++|||||||++||+.++..+.+.++++. .++|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998864 47999999999999876 99999999999999999998
Q ss_pred Hhhc
Q 018040 337 LLEN 340 (362)
Q Consensus 337 l~~~ 340 (362)
+++.
T Consensus 233 ~~~~ 236 (286)
T PRK13646 233 LFKD 236 (286)
T ss_pred HHhC
Confidence 8764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=369.08 Aligned_cols=220 Identities=25% Similarity=0.429 Sum_probs=186.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 186 (362)
..++++|++++|++. .+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++... +.
T Consensus 20 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 20 HILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred ceEEEEEEEEEeCCc--eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 369999999999753 59999999999999999999999999999999999864 7899999999998642 33
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..++++++|+||++.+|+.|+.+|+.+.. .. .++.+.++++.+++.+.+ ....+..+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 45678899999999999889999986421 11 123345566666654221 2334566788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++|||||+.+|++|||||||++||+.+++.+.+.+++..+++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999998876 999999999999999999998
Q ss_pred hhcCC
Q 018040 338 LENKS 342 (362)
Q Consensus 338 ~~~~~ 342 (362)
..++.
T Consensus 251 ~~~~~ 255 (268)
T PRK14248 251 FTSPK 255 (268)
T ss_pred HhCCC
Confidence 87643
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=366.91 Aligned_cols=221 Identities=25% Similarity=0.423 Sum_probs=187.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 59999999999753 59999999999999999999999999999999999997 3 58999999999853 2344
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC----CCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~----~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+... ..+ +++.++++.+++.+.+ ...++..+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 66788999999999998899999965321 111 2344566666665432 12345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|++++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999998
Q ss_pred hcCCcH
Q 018040 339 ENKSSS 344 (362)
Q Consensus 339 ~~~~~~ 344 (362)
+++...
T Consensus 243 ~~~~~~ 248 (259)
T PRK14274 243 SNPDDQ 248 (259)
T ss_pred hCCCCH
Confidence 764443
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=383.29 Aligned_cols=213 Identities=24% Similarity=0.382 Sum_probs=183.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.+
T Consensus 40 ~~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eeEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 359999999999754 5999999999999999999999999999999999999999999999999986543 4567889
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||+||++.++. .|+.||+.+.. ... .+.+.++++.+++.+. .+....+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHHHHHH
Confidence 99999998875 59999997422 112 1234455666665433 33344568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+++|++|||||||+|||+.++..+.+.|+++. +++|||++||+++.+.. ||||++|++|+++..|+++++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998864 47999999999999987 999999999999999999998654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=362.66 Aligned_cols=216 Identities=32% Similarity=0.476 Sum_probs=189.1
Q ss_pred cccEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 018040 113 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.+.++++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999753 235999999999999999999999999999999999999999999999999887666666778
Q ss_pred CcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 192 RLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
.++|+||++.+|+.|+++|+.+... ....++.+..+..++.+.++.++.++++.+.+.+.+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 8999999999998899999975322 223334444555666777777776788888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999987667899999999999977999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=377.83 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC---------
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--------- 183 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--------- 183 (362)
|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997542 259999999999999999999999999999999999999999999999876531
Q ss_pred ---------------CCHHHHhcCcEEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhcc
Q 018040 184 ---------------IGLHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNE 239 (362)
Q Consensus 184 ---------------~~~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~ 239 (362)
.....++++||||||+| .+|..|+++|+.+.. ... .+++.++++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 12345778899999986 567789999997532 122 234566777777642
Q ss_pred ccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-c
Q 018040 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-S 317 (362)
Q Consensus 240 ~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~ 317 (362)
...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|||+|||+++.+.. |
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 12334556789999999999999999999999999999999999999999998764 47999999999998876 9
Q ss_pred CeEEEEeCCEEEEecChhHHhhc
Q 018040 318 DMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||++|++|++++.|++++++.+
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=362.18 Aligned_cols=202 Identities=26% Similarity=0.383 Sum_probs=171.3
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH----H
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD----L 189 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~----~ 189 (362)
++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 36999999999999999999999999999999999999999999999999987665322 3
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
++.++|+||++.+|+. |+++|+.+.. ... .+++.++++.+++.+.. ...+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 5679999999998875 9999986521 111 23456677777765433 334456899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
+|||||+.+|++|||||||++||+.+++.+.+.+++..+ ++|||++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999988643 7899999999998877999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=360.72 Aligned_cols=208 Identities=25% Similarity=0.366 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 5789999999753 599999999999999999999999999999999999999999999999988643 3456778999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+++. |+++|+.+.. .. .++++.++++.+++.+..+. ...+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999988875 9999986421 11 12345667777777544333 3456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
+.+|+++||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999998764 3 7899999999999987 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=366.29 Aligned_cols=224 Identities=26% Similarity=0.391 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|+.. ++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++... +..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 48999999999753 59999999999999999999999999999999999997 4799999999988542 334
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC---C-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|++|++.+|+.|+++|+.+... . .++++.++++.+++.... ....+..+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence 56778999999999998899999964211 1 123445666766664211 12334567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|+++||||||++||+.+++.+.+.+++..++.|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999998
Q ss_pred hcCCcHHHH
Q 018040 339 ENKSSSFAQ 347 (362)
Q Consensus 339 ~~~~~~~~~ 347 (362)
..+...|.+
T Consensus 235 ~~~~~~~~~ 243 (251)
T PRK14251 235 IAPKKQITS 243 (251)
T ss_pred hCCCCHHHH
Confidence 765544543
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=365.67 Aligned_cols=221 Identities=23% Similarity=0.409 Sum_probs=186.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCC--CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI---VEP--TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl---~~p--~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|+++.|++. ++|+++||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGDF--HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECCE--eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 58999999999753 599999999999999999999999999999999997 454 589999999998653 234
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+.+|+.+.. .. .++++.++++.+++.+.+ ....++.+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 5678899999999998889999996421 11 123455677777765432 22345667789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|+++||||||++||+.+++.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999998
Q ss_pred hcCCcH
Q 018040 339 ENKSSS 344 (362)
Q Consensus 339 ~~~~~~ 344 (362)
+++...
T Consensus 234 ~~~~~~ 239 (250)
T PRK14245 234 TNPEKE 239 (250)
T ss_pred cCCCCh
Confidence 765433
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=385.39 Aligned_cols=217 Identities=23% Similarity=0.385 Sum_probs=187.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++...+. .++.+
T Consensus 18 ~~l~l~~v~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 369999999999753 59999999999999999999999999999999999999999999999999876654 46789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||+||++.+|+. |+.||+.+.. ... .+++.++++.+++.+..++ .+.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999975 9999997532 122 2345667777777654433 44568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
||+.+|++|||||||++||+.+++.+.+.+++.. .+.|+|+|||+++++.. ||||++|++|++++.|++++++.++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999998887653 37899999999999877 99999999999999999999998766
Q ss_pred cHH
Q 018040 343 SSF 345 (362)
Q Consensus 343 ~~~ 345 (362)
..|
T Consensus 243 ~~~ 245 (377)
T PRK11607 243 TRY 245 (377)
T ss_pred cHH
Confidence 544
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=362.54 Aligned_cols=208 Identities=24% Similarity=0.312 Sum_probs=177.6
Q ss_pred cEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 018040 115 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 189 (362)
.++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 589999999997532 36999999999999999999999999999999999999999999999999998776543 3
Q ss_pred h-cCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 R-SRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 r-~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+ +.++|+||++.+|+. |+++|+.+. .... .+++.++++.+++.+.. .+.+.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 3 679999999988875 999998642 1111 23456677777765433 33456789999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
++||||++.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998863 4799999999999998888999999999998775
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=357.85 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=170.5
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++|++++|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999752 359999999999999999999999999999999999999999999999998753 3456789999
Q ss_pred cCCC--CCCcccHHhhcCcCCC---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 197 PQDP--TMFEGSVHNNLDPLEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 197 ~Q~~--~l~~~tv~enl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
||++ .++..|++||+.+... ...+++.++++.+++.+..++ .+.+||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCC
Confidence 9997 3567799999975321 223467788888887654433 34568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+++||||||++||+.+++.+.+.+++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999886 457899999999999987 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=379.26 Aligned_cols=229 Identities=25% Similarity=0.370 Sum_probs=190.5
Q ss_pred cEEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~ 189 (362)
.++++|+++.|+. +...+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5999999999953 2235899999999999999999999999999999999999996 9999999999988876554
Q ss_pred ---h-cCcEEEcCCC--CCCc-ccHHhhcC----cCCCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 190 ---R-SRLSIIPQDP--TMFE-GSVHNNLD----PLEEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 190 ---r-~~i~~v~Q~~--~l~~-~tv~enl~----~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
| ++|+||||++ .+++ .|+.+|+. ....... +++.++++.+++.+. ...++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~--------~~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA--------RKRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCh--------HHHhcCCcccCC
Confidence 3 4799999998 4554 47777663 2111222 345566777766421 123456778899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
|||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988643 7899999999999986 999999999999999
Q ss_pred cChhHHhhcCCcHHHHHHHH
Q 018040 332 DSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 332 g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+++++++++...|.+.+..
T Consensus 244 g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 99999998877778765543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=349.41 Aligned_cols=213 Identities=24% Similarity=0.350 Sum_probs=184.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.+++.+++++|+... .+++||||+++.||++||.|||||||||+|++|++++.|++|+|++||.|+... +...|++||
T Consensus 1 Ml~v~~l~K~y~~~v-~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGSKV-QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccCHH-hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 378999999998743 489999999999999999999999999999999999999999999999998654 456899999
Q ss_pred EEcCCCCCCc-ccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+++-+..++. .|++|||.++.. .. +.++.+..+.+++.+.++ .+..+||-||||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHH
Confidence 9997777775 599999986532 22 344555566666554443 3444579999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+++|++++|||||||||..+.+.+.+.+.+.+ ++++||++||.+++++. ||||+++++|+++..|+++++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999999876 48999999999999997 999999999999999999998765
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-49 Score=377.77 Aligned_cols=227 Identities=24% Similarity=0.340 Sum_probs=190.8
Q ss_pred cEEEEEEEEEeCCC--------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH
Q 018040 115 EVDIHGLQVRYAPH--------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~ 186 (362)
.|+++|+++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2358999999999999999999999999999999999999999999999999987764
Q ss_pred H---HHhcCcEEEcCCCC--CCc-ccHHhhcCc----CCCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 187 H---DLRSRLSIIPQDPT--MFE-GSVHNNLDP----LEEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 187 ~---~~r~~i~~v~Q~~~--l~~-~tv~enl~~----~~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
. .+|++|+||||++. +++ .|+.+++.. ..... .+++.++++.+++.+. .....+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE----------HYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH----------HhcCCCcc
Confidence 3 45778999999983 555 388887742 11111 3456777888887531 12344667
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .+.|+|+||||++.+.. ||||++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37899999999999987 9999999999999
Q ss_pred EecChhHHhhcCCcHHHHHHHH
Q 018040 330 EFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 330 ~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
+.|+++++++++...|.+.+..
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 9999999998776677765543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=364.15 Aligned_cols=220 Identities=28% Similarity=0.441 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~ 186 (362)
+.++++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 468999999999753 599999999999999999999999999999999999763 69999999999864 234
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..+|+.++|+||++.+|+.|+++|+.+.. .. .++.+.++++.+++.+.+ ....+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHHH
Confidence 45678899999999988889999997531 11 123445566666664322 2334566788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++|||||+.+|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667899999999998877 999999999999999999998
Q ss_pred hhcCC
Q 018040 338 LENKS 342 (362)
Q Consensus 338 ~~~~~ 342 (362)
...+.
T Consensus 233 ~~~~~ 237 (250)
T PRK14240 233 FTNPK 237 (250)
T ss_pred HhCCC
Confidence 76543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=404.53 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=214.6
Q ss_pred CCcCHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC------cccc-CC---------
Q 018040 46 GVVDPAIA-GLAVTFG---LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPL------VIEA-SR--------- 105 (362)
Q Consensus 46 ~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~------~~~~-~~--------- 105 (362)
+.++.+.. +.+++|. ..+..++..+...+.+++++.++.+|+.++++.+++... .... ..
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 55665543 3344443 345666777888899999999999999999864322100 0000 00
Q ss_pred -C---CCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 106 -P---NCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 106 -~---~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
. .......+.++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--- 513 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--- 513 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---
Confidence 0 0000123469999999999744 3599999999999999999999999999999999999999999998864
Q ss_pred CCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC--------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 182 SSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 182 ~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
|++++||||+|.+|++|++||+.+.. ...+++++++++.+++.+++++ +.++++..+ .+.+|
T Consensus 514 --------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~L 583 (659)
T TIGR00954 514 --------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVL 583 (659)
T ss_pred --------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCC
Confidence 46799999999999999999997632 2456788899999999988877 888998875 67899
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
|||||||++||||++++|+++|||||||+||+.+++.+.+.+++. ++|+|+||||++.+..||++++|+.
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999764 7999999999999988999999973
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=371.99 Aligned_cols=218 Identities=25% Similarity=0.366 Sum_probs=184.1
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hcC
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSR 192 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~ 192 (362)
.++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 567899999754 58999999999999999999999999999999999999999999999999876654332 357
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.+..+. .+.+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 999999999885 59999986421 111 2345667777776544433 3456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+++|++|||||||++||+.+++.+.+.+.+.. .++|+|++||+++.+.. ||++++|++|++++.|+++++++.+
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998764 37899999999999877 9999999999999999999998765
Q ss_pred CcHHHH
Q 018040 342 SSSFAQ 347 (362)
Q Consensus 342 ~~~~~~ 347 (362)
...|.+
T Consensus 253 ~~~~~~ 258 (269)
T cd03294 253 ANDYVR 258 (269)
T ss_pred CcHHHH
Confidence 545544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=362.37 Aligned_cols=211 Identities=26% Similarity=0.359 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGAR--RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 7899999999753 599999999999999999999999999999999999999999999999998765543 3458999
Q ss_pred EcCCCCCC-cccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMF-EGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~-~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.++ ..|+++|+.+.. ... .+++.+.++.+++. ...+..+.+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999875 569999986431 111 22344555655553 334555677999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+.+|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998864 47899999999999877999999999999999999998765
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=369.49 Aligned_cols=223 Identities=21% Similarity=0.327 Sum_probs=186.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 191 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 59999999999753 599999999999999999999999999999999999999999999999998765433 3467
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcC----CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPL----EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
+++|+||++.+|+. |+.+|+.+. ..... ..+.++++.+++.+.. .....+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHH
Confidence 89999999999875 999998642 11121 2344566666664432 3345678999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.+++.. + ++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998864 3 7899999999999987 99999999999999999999987
Q ss_pred cCCcHHHHHHH
Q 018040 340 NKSSSFAQLVA 350 (362)
Q Consensus 340 ~~~~~~~~~~~ 350 (362)
++...+..++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 54434444443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=357.32 Aligned_cols=202 Identities=22% Similarity=0.357 Sum_probs=175.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCe--EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 4789999999653 699999999999999999999999999999999999999999999999987643 456778999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+||++.+++ .|++||+.+.. ...++++.++++.+++.+..++ .+.+||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 59999986431 2245567778888887654433 34568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998764 57899999999999987 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=431.48 Aligned_cols=293 Identities=22% Similarity=0.291 Sum_probs=240.5
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----ccc------------c---
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPL----VIE------------A--- 103 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~----~~~------------~--- 103 (362)
+..+.++++.+..++++...+..++..++..+..+.++.+|++|+.+|++.++.... ..+ .
T Consensus 493 ~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1560)
T PTZ00243 493 LLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAA 572 (1560)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccccccccc
Confidence 345678998888888888888888888999999999999999999999975431100 000 0
Q ss_pred --CC-------C---------------------------CCCCCCcccEEEEEEEEEeC---------------------
Q 018040 104 --SR-------P---------------------------NCSWPSQGEVDIHGLQVRYA--------------------- 126 (362)
Q Consensus 104 --~~-------~---------------------------~~~~~~~~~i~~~~l~~~y~--------------------- 126 (362)
.. + +..+...+.+.++|+++.++
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1560)
T PTZ00243 573 VLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPT 652 (1560)
T ss_pred ccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0 00000112466666666532
Q ss_pred -----------------CCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH
Q 018040 127 -----------------PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 127 -----------------~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~ 189 (362)
...+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------ 720 (1560)
T PTZ00243 653 SERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------ 720 (1560)
T ss_pred ccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------
Confidence 112358999999999999999999999999999999999999999999863
Q ss_pred hcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
++|+|+||+|++|++|++||+.+....+.+++.++++.+++.+.++.+|.|+++.++++|.+|||||||||+||||++.
T Consensus 721 -~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~ 799 (1560)
T PTZ00243 721 -RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA 799 (1560)
T ss_pred -CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 4699999999999999999999876665667888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHT-LGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
+|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+..||+|++|++|++++.|+++++++. +.|.++
T Consensus 800 ~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~ 877 (1560)
T PTZ00243 800 NRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT--SLYATL 877 (1560)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC--hHHHHH
Confidence 9999999999999999988877654 4444468999999999999988999999999999999999999864 346665
Q ss_pred HH
Q 018040 349 VA 350 (362)
Q Consensus 349 ~~ 350 (362)
..
T Consensus 878 ~~ 879 (1560)
T PTZ00243 878 AA 879 (1560)
T ss_pred HH
Confidence 54
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=375.75 Aligned_cols=211 Identities=23% Similarity=0.328 Sum_probs=184.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++++||
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECCE--EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 7899999999753 59999999999999999999999999999999999999999999999999865 34467788999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+. |+.||+.+.. ... .+++.++++.+++.+.. ++...+||||||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999996422 112 23456677777765443 344566899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+.+|++|||||||+|||+.+++.+.+.+++..+++|||++||+++.+.. ||||++|++|+++..|+++++...
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999987768999999999999987 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=363.74 Aligned_cols=223 Identities=24% Similarity=0.413 Sum_probs=188.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCCC--CH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISSI--GL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~~--~~ 186 (362)
+.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCCe--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 469999999999753 59999999999999999999999999999999999986 4 689999999998643 33
Q ss_pred HHHhcCcEEEcCCCCCCc-ccHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 187 HDLRSRLSIIPQDPTMFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
..+++.++|+||++.+|+ .|+++|+.+. .... ++++.++++.+++.+.+. ...+..+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHH
Confidence 456788999999999887 5999999642 1111 234566677777654332 22345677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. |||+++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HhhcCCcHH
Q 018040 337 LLENKSSSF 345 (362)
Q Consensus 337 l~~~~~~~~ 345 (362)
+...+...+
T Consensus 234 ~~~~~~~~~ 242 (252)
T PRK14256 234 IFTTPEKKQ 242 (252)
T ss_pred HHhCCCcHH
Confidence 987654444
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=378.71 Aligned_cols=229 Identities=21% Similarity=0.309 Sum_probs=189.2
Q ss_pred cEEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEeCCCCCHHH
Q 018040 115 EVDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 188 (362)
.|+++|++++|+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+..+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22359999999999999999999999999999999999996 58999999999998777654
Q ss_pred H----hcCcEEEcCCCC--CCc-ccHHhhcCcC-------C----C--CCHHHHHHHHHHcCCChHHHhccccchhhhcc
Q 018040 189 L----RSRLSIIPQDPT--MFE-GSVHNNLDPL-------E----E--YADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248 (362)
Q Consensus 189 ~----r~~i~~v~Q~~~--l~~-~tv~enl~~~-------~----~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 248 (362)
+ ++.|+||||++. +++ .|+.+|+... . . ...+++.++++.+++.+.. .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 3 247999999986 333 4888877420 0 0 0124567788888886421 12344
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeC
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 5667899999999999999999999999999999999999999999998653 7899999999999987 999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+|++.|+++++++++...|.+.+..
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ll~ 260 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQALIR 260 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 99999999999988776677664433
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=358.20 Aligned_cols=202 Identities=27% Similarity=0.426 Sum_probs=174.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 4789999999753 5999999999999 99999999999999999999999999999999999887655 567788999
Q ss_pred EcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|.. |+.+|+.+. .... .+++.++++.+++.+..+ ..+.+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999998875 999998642 1111 234566777777754332 34456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987667999999999999976 9999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=363.95 Aligned_cols=219 Identities=28% Similarity=0.410 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CC---CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EP---TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p---~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 58999999999753 5999999999999999999999999999999999995 36 489999999988543 234
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+.. . .. ++++.++++.+++.+.+ .+..++.+.+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHH
Confidence 5677899999999999899999986421 1 11 23345566777664322 23455667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998876 9999999999999999999998
Q ss_pred hcCC
Q 018040 339 ENKS 342 (362)
Q Consensus 339 ~~~~ 342 (362)
+.+.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 7643
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=375.62 Aligned_cols=212 Identities=24% Similarity=0.349 Sum_probs=181.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 58999999999753 599999999999999999999999999999999999999999999999988643 345678899
Q ss_pred EEcCCCCCCc-ccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+++ .|+++|+.+.. .... +++.++++.+++.+. ......+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHHHHHH
Confidence 9999998885 59999986321 1222 234455666665433 334456789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+.+|++|||||||++||+.+++.+.+.+++.. +++|||++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998864 57899999999999987 999999999999999999998654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=362.20 Aligned_cols=211 Identities=25% Similarity=0.413 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 194 (362)
++++|++++|++. .+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999876665443 46799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+|+. |+++|+.+.. ... .+++.++++.+++. ...+..+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHHH
Confidence 99999998876 9999996421 111 12334555555543 33445566789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|+.+|++|||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998764 47899999999998877 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=364.70 Aligned_cols=217 Identities=24% Similarity=0.399 Sum_probs=183.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----------
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---------- 185 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---------- 185 (362)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCe--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 4789999999753 5999999999999999999999999999999999999999999999999886542
Q ss_pred ---HHHHhcCcEEEcCCCCCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 186 ---LHDLRSRLSIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 186 ---~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
...+++.++|++|++.+|+ .|+.+|+.+.. ... ++.+.++++.+++.+. +++.+.+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhhc
Confidence 1346788999999998886 69999996421 111 2345566666666443 33445678
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||++|||||+++|+++||||||++||+.++..+.+.|++.. .+.|+|++||+++.+.. |||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998764 37899999999999976 99999999999999
Q ss_pred ecChhHHhhcCCcHH
Q 018040 331 FDSPTRLLENKSSSF 345 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~ 345 (362)
.|+++++...+...+
T Consensus 228 ~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 228 QGKPDEIFRQPKEER 242 (252)
T ss_pred eCCHHHHhcCCCcHH
Confidence 999999976654334
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=371.79 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~~ 192 (362)
.|+++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 59999999999633 35999999999999999999999999999999999999999999999999984 2334567888
Q ss_pred cEEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
++|+||++ .+++.|+++|+.+.. ... .+.+.++++.+++.+. .+..+.+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHHH
Confidence 99999998 467789999996521 122 2345666777776543 344567789999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||+.+|++|||||||++||+.++..+.+.+++..+ ++|||++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988643 7899999999999986 999999999999999999988653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-49 Score=359.30 Aligned_cols=205 Identities=24% Similarity=0.388 Sum_probs=175.3
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
++++|++++|++.. +++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....+++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997532 159999999999999999999999999999999999999999999999999864 345667889
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+|+||++.+|+. |++||+.+.. ... .+++.++++.+++.+.. .+.+.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence 999999998875 9999986421 111 23456677777665433 3345668999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
|++.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998864 47899999999999877 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=361.75 Aligned_cols=213 Identities=23% Similarity=0.352 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--HHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r~~i 193 (362)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999975 35999999999999999999999999999999999999999999999999987543 34567789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++.++. .|+++|+.+.. ... .+++.++++.+++.+ .....+.+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-----------RAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-----------HHhcChhhcCHHHHHHHHHH
Confidence 99999998886 59999996521 111 223445566665543 33445567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
||++.+|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. |||+++|++|++++.|+++++.+.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998764 47999999999999977 9999999999999999999987654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=362.21 Aligned_cols=219 Identities=27% Similarity=0.433 Sum_probs=186.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHKH--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECCe--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 58999999999753 5999999999999999999999999999999999999997 69999999988643 334
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC---C-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|++||+.+... . . ++.+.++++.+++.+.+ ....+..+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHH
Confidence 66788999999999998899999975321 1 1 12344455666665432 23456678899999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667999999999999988 8999999999999999999987
Q ss_pred hcCC
Q 018040 339 ENKS 342 (362)
Q Consensus 339 ~~~~ 342 (362)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 6644
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=365.15 Aligned_cols=220 Identities=25% Similarity=0.423 Sum_probs=188.4
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 186 (362)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999964 369999999999999999999999999999999999996 589999999999854 234
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..+++.++|+||++.+|+.|+++|+.+.. . .. ++++.++++.+++.+.+ +..+++.+.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHH
Confidence 45678899999999999889999997521 1 11 23455667777775433 2345567788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++|||||+++|++|||||||++||+.++..+.+.|++..++.|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999876 999999999999999999999
Q ss_pred hhcCC
Q 018040 338 LENKS 342 (362)
Q Consensus 338 ~~~~~ 342 (362)
...+.
T Consensus 250 ~~~~~ 254 (267)
T PRK14237 250 FTNPK 254 (267)
T ss_pred hcCCC
Confidence 76543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=365.50 Aligned_cols=223 Identities=26% Similarity=0.372 Sum_probs=192.7
Q ss_pred cEEEEEEEEEeCCCC----------------------CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 018040 115 EVDIHGLQVRYAPHL----------------------PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~----------------------~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G 172 (362)
.|+++||++-|+.+. ..-++|+||+|+.||++.|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588888888886421 1237999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHH----hcCcEEEcCCCCCCcc-cHHhhcCcCCC---C----CHHHHHHHHHHcCCChHHHhccc
Q 018040 173 LIAIDGIDISSIGLHDL----RSRLSIIPQDPTMFEG-SVHNNLDPLEE---Y----ADEEIWEALDKCQLGNEVRKNEG 240 (362)
Q Consensus 173 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~~-tv~enl~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~ 240 (362)
+|+++|.++..++..++ |+++++|||+..|++. ||.+|..|.-+ . ..++..++++.+||..+.++.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 99999999999887654 3569999999999975 99999987532 1 23456778888988877666554
Q ss_pred cchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-c
Q 018040 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-S 317 (362)
Q Consensus 241 ~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~ 317 (362)
+|||||||||.|||||+.+|+|||||||+|+|||--+..+++.|.++. -++||++||||++++.+ .
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 469999999999999999999999999999999999999999887653 36899999999999888 9
Q ss_pred CeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 318 DMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
|||.+|++|+|+..|+|+|++.+|...|-.-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999999887666433
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=362.31 Aligned_cols=212 Identities=24% Similarity=0.344 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 2 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 47899999999753 59999999999999999999999999999999999999999999999999877665543 4579
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCC---------------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEY---------------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~---------------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
+|+||++.+|+. |+++|+.+.... ..+++.++++.+++.+ ..+....+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 999999999976 999998652110 1234455666665543 3345566799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++||||++.+|++|||||||++||+.+++.+.+.+++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999987 99999999999999999999
Q ss_pred Hhh
Q 018040 337 LLE 339 (362)
Q Consensus 337 l~~ 339 (362)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=362.59 Aligned_cols=224 Identities=25% Similarity=0.435 Sum_probs=188.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 187 (362)
.|+++|++++|++ .++++++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 5899999999974 3599999999999999999999999999999999999984 899999999988643 233
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+.. ... ++++.++++.+++.+.+ +...++.+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 5677899999999998899999997421 111 23345667777765432 23355667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|+++||||||++||+.++..+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998876 9999999999999999999987
Q ss_pred hcCCcHHHH
Q 018040 339 ENKSSSFAQ 347 (362)
Q Consensus 339 ~~~~~~~~~ 347 (362)
+.+...+..
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14262 234 ERPKNKLTE 242 (250)
T ss_pred hCCCChHHH
Confidence 654433443
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=362.83 Aligned_cols=215 Identities=25% Similarity=0.383 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--------H
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--------L 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--------~ 186 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 48999999999753 5999999999999999999999999999999999999999999999999886432 2
Q ss_pred HHHhcCcEEEcCCCCCCc-ccHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 187 HDLRSRLSIIPQDPTMFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
..+++.++|+||++.+|+ .|+++|+.+. .... .+.+.++++.+++.+. .+..+.+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 346778999999998886 5999999642 1112 2234556666665432 344567799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
|||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998765 47899999999999977 9999999999999999999
Q ss_pred HHhhcCC
Q 018040 336 RLLENKS 342 (362)
Q Consensus 336 ~l~~~~~ 342 (362)
++.+.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9876543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=384.28 Aligned_cols=203 Identities=27% Similarity=0.406 Sum_probs=175.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hcCcEEEcCCCCCCc-cc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQDPTMFE-GS 206 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~-~t 206 (362)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+ +++++|+||++.+|+ .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999987765443 357999999999986 49
Q ss_pred HHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 207 VHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 207 v~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
++||+.+.. ... .+++.++++.+++.+..++ .+.+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999997531 111 2455677888877654443 3456899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 280 TASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
|++||+.+++.+++.|.+.. .++|||++||+++.+.. ||+|++|++|++++.|++++++.++...|
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 99999999999999998763 47899999999999877 99999999999999999999987654444
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=369.22 Aligned_cols=214 Identities=22% Similarity=0.336 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++.. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 488999999996432 5999999999999999999999999999999999999999999999999987766667788899
Q ss_pred EEcCCCC--CCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~--l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++. +++.|+.+|+.+.. ... .+.+.++++.+++.+...+ .+..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999973 66779999996421 122 2345667777776544433 34568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.+++.+.+.+++..+ +.|||++||+++.+.. ||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988643 7899999999999976 999999999999999999998653
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=368.51 Aligned_cols=213 Identities=24% Similarity=0.389 Sum_probs=181.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i~ 194 (362)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999987654 346678899
Q ss_pred EEcCCCC--CCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPT--MFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~--l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++. ++..|+.+|+.+... .. .+.+.++++.+++.+. .+..+..||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHHH
Confidence 9999985 456799999975321 12 2345556666666443 34445678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|+++||||||++||+.++..+.+.++++. ++.|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998764 47999999999999977999999999999999999887653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=361.91 Aligned_cols=219 Identities=24% Similarity=0.392 Sum_probs=186.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECCe--eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 58999999999753 599999999999999999999999999999999999875 799999999998643 234
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC---C-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+... . . .+++.++++.+++.+.+ ....+..+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 56778999999999998999999975311 1 1 23345677777764322 22345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++||||++.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999997
Q ss_pred hcCC
Q 018040 339 ENKS 342 (362)
Q Consensus 339 ~~~~ 342 (362)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14270 235 LEPQ 238 (251)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=365.66 Aligned_cols=224 Identities=26% Similarity=0.422 Sum_probs=187.4
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--C
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--I 184 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~ 184 (362)
....++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 21 ~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 21 KKVVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CceEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 34469999999999753 59999999999999999999999999999999999997 699999999998853 2
Q ss_pred CHHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CCCH-----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 185 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYAD-----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 185 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~~~-----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
+...+++.++|+||++.+|..|+.+|+.+.. ...+ +.+.++++.+++.+ ++...++..+.+||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgG 171 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGG 171 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHH
Confidence 3456678899999999999889999996421 1111 12334444444322 2334456677889999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999887667999999999999887 9999999999999999999
Q ss_pred HHhhcCCcH
Q 018040 336 RLLENKSSS 344 (362)
Q Consensus 336 ~l~~~~~~~ 344 (362)
++..++...
T Consensus 252 ~~~~~~~~~ 260 (271)
T PRK14238 252 KIFSNPSDK 260 (271)
T ss_pred HHHcCCCCH
Confidence 997765433
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-49 Score=364.75 Aligned_cols=221 Identities=26% Similarity=0.433 Sum_probs=186.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCCC--HHH
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSIG--LHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~~--~~~ 188 (362)
-+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 568999999974 359999999999999999999999999999999999986 47999999999876443 234
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCC---CC------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLE---EY------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+++.++|+||++.+|+.|+.+|+.+.. .. .++++.++++.+++.+.+ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 677899999999999889999986421 11 123455677777775432 12344566789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999887668999999999999887 9999999999999999999998
Q ss_pred hcCCcHH
Q 018040 339 ENKSSSF 345 (362)
Q Consensus 339 ~~~~~~~ 345 (362)
+.+...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 7654444
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=365.42 Aligned_cols=216 Identities=25% Similarity=0.339 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 187 (362)
.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 48899999999631 24699999999999999999999999999999999999999999999999998766543
Q ss_pred H---HhcCcEEEcCCCC--CCc-ccHHhhcCcC----CCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 188 D---LRSRLSIIPQDPT--MFE-GSVHNNLDPL----EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 188 ~---~r~~i~~v~Q~~~--l~~-~tv~enl~~~----~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+ +++.++|+||++. +++ .|+++|+.+. ... ..+++.++++.+++.. ...+..+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 3 5678999999973 443 5999998431 111 1234566777776642 1234455679
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|++..+ ++|||++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999988642 7899999999999986 99999999999999
Q ss_pred ecChhHHhhc
Q 018040 331 FDSPTRLLEN 340 (362)
Q Consensus 331 ~g~~~~l~~~ 340 (362)
.|+++++...
T Consensus 232 ~g~~~~~~~~ 241 (265)
T TIGR02769 232 ECDVAQLLSF 241 (265)
T ss_pred ECCHHHHcCC
Confidence 9999999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=362.28 Aligned_cols=226 Identities=25% Similarity=0.386 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 187 (362)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 59999999999753 599999999999999999999999999999999999763 489999999998765 344
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
..++.++|+||++.+|+.|+++|+.+... .. ++.+.++++.+++.+.+ .+..++.+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHHH
Confidence 56778999999999998899999975321 11 22345566666654322 23456677889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++||||++.+|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999999976 9999999999999999999987
Q ss_pred hcCCcHHHHHH
Q 018040 339 ENKSSSFAQLV 349 (362)
Q Consensus 339 ~~~~~~~~~~~ 349 (362)
.++...+.+.+
T Consensus 237 ~~~~~~~~~~~ 247 (253)
T PRK14261 237 ENPHEELTENY 247 (253)
T ss_pred hCCCcHHHHHH
Confidence 66544454433
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=369.87 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=185.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEeCCCCCHHHHh
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---G~I~i~g~~i~~~~~~~~r 190 (362)
..++++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 3699999999997543459999999999999999999999999999999999999987 8999999999776666677
Q ss_pred cCcEEEcCCCC--CCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 191 SRLSIIPQDPT--MFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 191 ~~i~~v~Q~~~--l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
++++|+||++. +++.|+.+|+.+.. .... +++.++++.+++.+.. +..+.+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHH
Confidence 88999999984 45679999997531 1222 3456677777765443 334567899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+..|||+++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998864 3789999999999987799999999999999999998765
Q ss_pred c
Q 018040 340 N 340 (362)
Q Consensus 340 ~ 340 (362)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=356.84 Aligned_cols=202 Identities=22% Similarity=0.361 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999865543 2467999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.+.. .+.+.+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999885 59999996521 111 23345566666664433 344567899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999999887 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=363.90 Aligned_cols=220 Identities=24% Similarity=0.453 Sum_probs=187.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~~ 187 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 59999999999753 59999999999999999999999999999999999986 479999999998853 3445
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC---C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
.++++++|+||++.+|+.|+.+|+.+... . .++++.++++.+++.+.+. ...+..+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 66788999999999888899999975321 1 1233455666666654332 234566788999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe---------CCEEEEe
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS---------YGLIEEF 331 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~---------~G~i~~~ 331 (362)
+|||||+++|++|||||||++||+.+++.+.+.|.+..+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987667899999999999887 99999998 8999999
Q ss_pred cChhHHhhcCCc
Q 018040 332 DSPTRLLENKSS 343 (362)
Q Consensus 332 g~~~~l~~~~~~ 343 (362)
|+++++.+++..
T Consensus 241 ~~~~~~~~~~~~ 252 (264)
T PRK14243 241 DRTEKIFNSPQQ 252 (264)
T ss_pred CCHHHHHhCCCc
Confidence 999999876543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=363.10 Aligned_cols=216 Identities=27% Similarity=0.403 Sum_probs=184.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC---------
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI--------- 184 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--------- 184 (362)
+.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 469999999999753 599999999999999999999999999999999999999999999999987532
Q ss_pred ----CHHHHhcCcEEEcCCCCCCcc-cHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCC
Q 018040 185 ----GLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 185 ----~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
....++++++|+||++.+++. |++||+.+.. ... .+++.++++.+++.+.. .+..+.
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 123567789999999999875 9999986421 111 23456677777765432 133456
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+||||||||++|||||+++|+++||||||++||+.+++.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 789999999999999999999999999999999999999999998865 47999999999999987 9999999999999
Q ss_pred EecChhHHhhcC
Q 018040 330 EFDSPTRLLENK 341 (362)
Q Consensus 330 ~~g~~~~l~~~~ 341 (362)
+.|+++++...+
T Consensus 232 ~~~~~~~~~~~~ 243 (257)
T PRK10619 232 EEGAPEQLFGNP 243 (257)
T ss_pred EeCCHHHhhhCc
Confidence 999999987654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=370.05 Aligned_cols=216 Identities=27% Similarity=0.429 Sum_probs=181.7
Q ss_pred cEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHH
Q 018040 115 EVDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~ 187 (362)
.++++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 3599999999999999999999999999999999999999999999999998643 234
Q ss_pred HHhcCcEEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 188 DLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 188 ~~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..++.++|+||++ .+|+.|+.+|+.+.. ... .+.+.++++.+++.. ......+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 5677899999998 467779999996421 122 233456666666642 123445567899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
||++|||||+.+|++|||||||++||+.++..+.+.|++.. ++.|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998864 47899999999999887 99999999999999999998
Q ss_pred Hhhc
Q 018040 337 LLEN 340 (362)
Q Consensus 337 l~~~ 340 (362)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 7653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=366.81 Aligned_cols=212 Identities=26% Similarity=0.344 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 59999999999753 5999999999999999999999999999999999999999999999999987777777788899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-----------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.++.. |+.+|+.+... ..++++.++++.+++.+.. .....+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA-----------HRLVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCCHHHHHHHH
Confidence 99999877654 99999964210 1123456677777764433 3334568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.|.+.. + ++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998864 3 7899999999999976 99999999999999999988764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=358.24 Aligned_cols=203 Identities=26% Similarity=0.304 Sum_probs=172.9
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
++++|++++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 369999999999999999999999999999999999999999999999998753 35679
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+|+||++.+|+ .|+++|+.+.. .. ..+++.++++.+++.+..+ ....+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99999999887 59999986421 11 1244566777777654433 334568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLS--YGLIEEFDSP 334 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~--~G~i~~~g~~ 334 (362)
||+.+|+++||||||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||++++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998763 37899999999998876 99999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=352.21 Aligned_cols=199 Identities=22% Similarity=0.380 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
++++||+++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997642 3699999999999999999999999999999999999999999999998 5
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
|+|+||++.+|+.|++||+.+......++..++++.+++.+++...+.++++.+.+.+.+||+|||||++|||||+.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765555556777888889988899888889999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 273 VLVLDEATASVDTATDNLIQH-TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~-~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
++||||||++||+.+.+.+.+ .+++.. ++.|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999988887 455543 4689999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=367.41 Aligned_cols=215 Identities=26% Similarity=0.408 Sum_probs=183.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999643346999999999999999999999999999999999999999999999999997766667888999
Q ss_pred EEcCCCC--CCcccHHhhcCcCC---CCCHH----HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPT--MFEGSVHNNLDPLE---EYADE----EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~--l~~~tv~enl~~~~---~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++. ++..|+++|+.+.. ....+ .+.++++.+++.+. +...+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHHHH
Confidence 9999983 44679999996521 12222 34556666666443 33445678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.+++.+.+.|++.. + ++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998864 3 4899999999998877999999999999999999887654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-49 Score=356.31 Aligned_cols=200 Identities=29% Similarity=0.421 Sum_probs=170.2
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975323599999999999999999999999999999999999999999999999998776666778889999
Q ss_pred cCCCC--CCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 197 PQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 197 ~Q~~~--l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
||++. ++..|+++|+.+.. ... .+++.++++.+++.+. +.+.+.+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 99984 55679999986521 111 2334556666665433 3445567899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
+.+|+++||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998764 47899999999999988 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=357.22 Aligned_cols=203 Identities=26% Similarity=0.377 Sum_probs=171.5
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 190 (362)
++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 35999999999999999999999999999999999999999999999999987765433 33
Q ss_pred -cCcEEEcCCCCCCc-ccHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 191 -SRLSIIPQDPTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 191 -~~i~~v~Q~~~l~~-~tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+.++|+||++.+|+ .|++||+.+. .... .+++.++++.+++.+. ....+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 67999999998886 5999999642 1111 2334566666665433 3344567899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIE 329 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~ 329 (362)
+|||||+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999998779999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=360.02 Aligned_cols=218 Identities=26% Similarity=0.415 Sum_probs=185.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCC-CCCHHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDIS-SIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~-~~~~~~ 188 (362)
.++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 5899999999975 3599999999999999999999999999999999999986 5999999999885 334556
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCC---CC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+++.++|+||++.+|+.|+.+|+.+.. .. . .+++.++++.+++.+.+ ...+...+.+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 778899999999999899999997431 11 1 12344556666665432 234455677899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
++|||||+.+|+++||||||++||+.+...+.+.|++..+++|||++||+++.+.. |||+++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987667899999999999887 99999999999999999999876
Q ss_pred cC
Q 018040 340 NK 341 (362)
Q Consensus 340 ~~ 341 (362)
.+
T Consensus 234 ~~ 235 (249)
T PRK14253 234 NP 235 (249)
T ss_pred CC
Confidence 53
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=360.24 Aligned_cols=212 Identities=22% Similarity=0.329 Sum_probs=179.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC------CCHHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS------IGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~------~~~~~ 188 (362)
.++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 37899999999753 59999999999999999999999999999999999999999999999998731 12345
Q ss_pred HhcCcEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+++.++|+||++.+|+. |+.+|+... .... .+++.++++.+++.+. ++..+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 67789999999998875 999998531 1111 2334555666665443 33445678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|++|||||+.+|+++||||||++||+.++..+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998865 47999999999999976 999999999999999999887
Q ss_pred hh
Q 018040 338 LE 339 (362)
Q Consensus 338 ~~ 339 (362)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 54
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=363.64 Aligned_cols=220 Identities=26% Similarity=0.400 Sum_probs=187.9
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IG 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~ 185 (362)
.+.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 3469999999999753 599999999999999999999999999999999999874 89999999999864 23
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
...+++.++|+||++.+|+.|+++|+.+.. .. . .+++.++++.+++.+.+. +..+..+.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 445678899999999999889999996421 11 1 234566677777654322 34466778899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+++|+++||||||++||+.++..+.+.+++..++.|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HhhcC
Q 018040 337 LLENK 341 (362)
Q Consensus 337 l~~~~ 341 (362)
+...+
T Consensus 254 ~~~~~ 258 (272)
T PRK14236 254 LFTSP 258 (272)
T ss_pred HhcCC
Confidence 87654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=345.47 Aligned_cols=178 Identities=34% Similarity=0.547 Sum_probs=162.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++..+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999976433599999999999999999999999999999999999999999999999987654 4566788999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+||++.+|+.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999987 34589999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 276 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
|||||++||+.+++.+.+.+++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998876689999999999998779999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=366.18 Aligned_cols=220 Identities=25% Similarity=0.444 Sum_probs=186.6
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--C
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--G 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~ 185 (362)
...|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 37 ~~~l~i~~l~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 3469999999999753 59999999999999999999999999999999999997 6899999999988542 3
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
...++++++|+||++.+|+.|+.+|+.+.. .. ..+++.++++.+++.+.+. ..+++++.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 445678899999999988889999996421 11 2345667777777653322 2345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEE-EEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVL-LLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~-vl~~G~i~~~g~~~~l 337 (362)
|++|||||+++|++|||||||++||+.+++.+.+.|++..++.|||++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987666899999999999887 99975 5799999999999998
Q ss_pred hhcC
Q 018040 338 LENK 341 (362)
Q Consensus 338 ~~~~ 341 (362)
..++
T Consensus 268 ~~~~ 271 (285)
T PRK14254 268 FENP 271 (285)
T ss_pred HhCc
Confidence 7654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=363.74 Aligned_cols=212 Identities=24% Similarity=0.382 Sum_probs=183.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECCE--EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 37899999999753 5999999999999999999999999999999999999999999999999987766667777899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-----------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.+++. |+.+|+.+... ...+++.++++.+++.+. ....+.+||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999988865 99999875310 012345566666665433 33456678999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
||||++.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998764 47899999999999887 99999999999999999998865
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=366.09 Aligned_cols=215 Identities=24% Similarity=0.381 Sum_probs=184.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999754345899999999999999999999999999999999999999999999999997777777888999
Q ss_pred EEcCCCC-CC-cccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPT-MF-EGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~-l~-~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++. +| ..|+.+|+.+... .. .+++.++++.+++.+.. ...+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9999985 44 4588999865311 11 23455667777765433 3345678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|++.+|++|||||||++||+.+++.+.+.+++.. .++|+|++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998864 37899999999998877999999999999999999988654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=368.36 Aligned_cols=215 Identities=26% Similarity=0.372 Sum_probs=181.4
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~ 188 (362)
++++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997532 3599999999999999999999999999999999999999999999999998653 2355
Q ss_pred HhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+++.|+|+||++ .+|+.|+++|+.+.. .... +.+.++++.+++.+ ......+.+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 778899999997 577789999996421 1222 22345566666542 1234456679999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998764 47899999999999977 999999999999999999888
Q ss_pred hhc
Q 018040 338 LEN 340 (362)
Q Consensus 338 ~~~ 340 (362)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=363.64 Aligned_cols=230 Identities=25% Similarity=0.376 Sum_probs=191.9
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-C----CccEEEECCEeCCCCCHHH
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-P----TAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p----~~G~I~i~g~~i~~~~~~~ 188 (362)
++++|++..|.... ..+++||||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|+++..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999996532 358999999999999999999999999999999999998 4 5799999999999888764
Q ss_pred ---Hh-cCcEEEcCCCC--CCc-ccHHhhc----CcCCCC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 189 ---LR-SRLSIIPQDPT--MFE-GSVHNNL----DPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 189 ---~r-~~i~~v~Q~~~--l~~-~tv~enl----~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
+| +.|+||||+|. |-+ .||.+.+ ...... ..++..++|+.+++.+. +..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 34 36999999984 222 2555443 221111 13456778888888642 2345556778
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++. .+.|+|+||||+..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999865 47999999999999988 9999999999999
Q ss_pred EecChhHHhhcCCcHHHHHHHHHh
Q 018040 330 EFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 330 ~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|.|+.++++.++...|++.+-...
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s~ 257 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNSL 257 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHhC
Confidence 999999999999889987765443
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=365.20 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=184.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. .+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 469999999999753 599999999999999999999999999999999999999999999999998777766777889
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC--C------C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE--E------Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~--~------~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+|+||++.+|. .|+++|+.+.. . . ..+++.++++.+++.+. ....+.+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHHH
Confidence 99999998875 59999986421 0 1 12345566776666433 3445677899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+||||++.+|+++||||||++||+.+++.+.+.|.+.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998864 37899999999998877 9999999999999999999886
Q ss_pred h
Q 018040 339 E 339 (362)
Q Consensus 339 ~ 339 (362)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=358.42 Aligned_cols=213 Identities=26% Similarity=0.398 Sum_probs=181.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 48899999999753 5999999999999999999999999999999999999999999999999987766543 46789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++.+|+. |+.||+.+... .. ...+.++++.+++. ...+....+||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHHHHHHHH
Confidence 999999988874 99999975321 11 12344455555443 334555677999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||++.+|++|||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998764 47899999999988877 999999999999999999998653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=361.39 Aligned_cols=213 Identities=25% Similarity=0.362 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 48899999999753 5999999999999999999999999999999999999999999999999987777666778899
Q ss_pred EEcCCCCC-CcccHHhhcCcCCC---C----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTM-FEGSVHNNLDPLEE---Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l-~~~tv~enl~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+ +..|++||+.+... . .++.+.++++.+++.+. ....+.+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99999987 45699999865321 1 12345566777766433 334456789999999999999
Q ss_pred hc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 267 LL------KKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 267 l~------~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+ .+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998764 47899999999999986 999999999999999999988
Q ss_pred hhc
Q 018040 338 LEN 340 (362)
Q Consensus 338 ~~~ 340 (362)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 653
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=358.43 Aligned_cols=214 Identities=23% Similarity=0.331 Sum_probs=180.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 5899999999975 35999999999999999999999999999999999999999999999999987766544 56789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC-CCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE-YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~-~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+|+||++.+|+. |+++|+.+... ... +.+.++++.++ ++.......+.+||||||||++|||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFP----------RLHERRIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHH----------HHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 999999998875 99999965321 111 12222233221 122334456678999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. |||+++|++|++++.|+++++..+
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998764 47999999999998877 999999999999999999998643
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=355.29 Aligned_cols=200 Identities=24% Similarity=0.344 Sum_probs=171.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~~ 192 (362)
++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 3599999999999999999999999999999999999999999999999998766532 35678
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+ .|+++|+.+.. .. ..+++.++++.+++.+..++ ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 59999986421 11 13456677777777554333 3356899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
|||+.+|+++||||||++||+.++..+.+.+++.. +++|+|++||+++.+.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998864 47999999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=354.45 Aligned_cols=201 Identities=25% Similarity=0.351 Sum_probs=171.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~ 192 (362)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999653 359999999999999999999999999999999999999999999999999876543 246778
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+. |+++|+.+.. ... .+++.++++.+++.+..+ ..+.+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHH
Confidence 9999999998874 9999996421 111 234566677777654333 33456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
|||+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998864 57999999999999987 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=347.39 Aligned_cols=215 Identities=25% Similarity=0.412 Sum_probs=188.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
.++++|++..|+.. .+|++|||++++||+++|+||||||||||+++|+|+.+|.+|+|.++|+|++..++++. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 58999999999864 59999999999999999999999999999999999999999999999999999988765 6679
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCC-CH-H----HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEY-AD-E----EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~-~~-~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+||||.-.+|+. ||.||+...... .+ + .++++.+ .+| .|....++++.+|||||+|.+|||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~---------lFP-~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYE---------LFP-RLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHH---------HCh-hHHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999975 999999753211 11 1 1222222 223 36777888899999999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|+.+|++|+|||||.||-|.-.+.|.+.++++.+ +.||++|.++...+.. +||.+||++|+|+.+|+.+++.+++
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999998763 5799999999999887 9999999999999999999998763
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=366.48 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=188.0
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--C
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--G 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~ 185 (362)
...++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 37 ~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 3469999999999753 59999999999999999999999999999999999864 4999999999988543 2
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
...+|++++|+||++.+|+.|+.||+.+.. .. . .+.+.++++.+++.+.+ .......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHH
Confidence 234677899999999999889999997531 11 1 23345566666654322 223455677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. |||+++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887667899999999999887 99999999999999999999
Q ss_pred HhhcCCcHHHH
Q 018040 337 LLENKSSSFAQ 347 (362)
Q Consensus 337 l~~~~~~~~~~ 347 (362)
+.+++...+.+
T Consensus 268 ~~~~~~~~~~~ 278 (286)
T PRK14275 268 LFTNPKDRMTE 278 (286)
T ss_pred HHhCCCcHHHH
Confidence 98765444433
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=360.86 Aligned_cols=218 Identities=25% Similarity=0.421 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999753 599999999999999999999999999999999999974 69999999998853 3344
Q ss_pred HHhcCcEEEcCCCCCCc-ccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 188 DLRSRLSIIPQDPTMFE-GSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~-~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
.+++.++|++|++.+|+ .|+++|+.+.. . .. ++.+.++++.+++.+.+ .......+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 67788999999999887 49999986421 1 11 23445667777764322 2234556778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe------CCEEEEe
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS------YGLIEEF 331 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~------~G~i~~~ 331 (362)
||++|||||+.+|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999887667899999999999876 99999997 8999999
Q ss_pred cChhHHhhcC
Q 018040 332 DSPTRLLENK 341 (362)
Q Consensus 332 g~~~~l~~~~ 341 (362)
|++++++..+
T Consensus 235 ~~~~~~~~~~ 244 (258)
T PRK14241 235 DDTEKIFSNP 244 (258)
T ss_pred CCHHHHHhCc
Confidence 9999987653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=349.57 Aligned_cols=215 Identities=25% Similarity=0.385 Sum_probs=185.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 192 (362)
+.+..+|+.++|+.. .++++|||++++||+||+.|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 358899999999754 59999999999999999999999999999999999999999999999999999998765 445
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCCC---------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEEY---------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|||+||++.+|.. ||+|||...-+. ..+++.+.++.+++. ...+..+.+||||||+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-----------hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-----------HLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-----------HHhcCcccccccchHHHHH
Confidence 9999999999976 999999632111 112244555555443 3445567789999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||||+.+|++++||||++|+||.+...|+++++.++ +|..|++.-|+..+... |||.+++.+|+|...|+|+++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998875 57899999999976555 999999999999999999999987
Q ss_pred C
Q 018040 341 K 341 (362)
Q Consensus 341 ~ 341 (362)
+
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 4
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=365.71 Aligned_cols=215 Identities=23% Similarity=0.350 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.++++|++++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 23589999999999999999999999999999999999999999999999998776666778899
Q ss_pred EEEcCCCC--CCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPT--MFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~--l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++. ++..|+.+|+.+.. .... +++.++++.+++.+..+ ..+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 55679999997421 1222 23456677777654433 34567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|++|||||||++||+.+++.+.+.+++..+ +.|||++||+++.+..||+|++|++|++++.|++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987643 7899999999999878999999999999999999998754
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=361.21 Aligned_cols=220 Identities=28% Similarity=0.436 Sum_probs=186.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. ....
T Consensus 7 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECCe--EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 69999999999753 599999999999999999999999999999999999985 48999999998853 2334
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|++||+.+.. ... ++.+.++++.+++.+.+. ...+..+.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHH
Confidence 5677899999999999899999996421 111 233456677777754322 2345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe-----CCEEEEecC
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS-----YGLIEEFDS 333 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~-----~G~i~~~g~ 333 (362)
|++|||||+++|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. |||+++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999987667899999999999987 99999998 599999999
Q ss_pred hhHHhhcCCc
Q 018040 334 PTRLLENKSS 343 (362)
Q Consensus 334 ~~~l~~~~~~ 343 (362)
++++.+.+..
T Consensus 238 ~~~~~~~~~~ 247 (259)
T PRK14260 238 TTQIFSNPLD 247 (259)
T ss_pred HHHHhcCCCC
Confidence 9999765443
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=362.52 Aligned_cols=223 Identities=22% Similarity=0.390 Sum_probs=187.9
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI-- 184 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~-- 184 (362)
....|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...
T Consensus 17 ~~~~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCceEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 34479999999999753 599999999999999999999999999999999999863 589999999988542
Q ss_pred CHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC---C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 185 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 185 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
....+++.++|+||++.+|+.|+.+|+.+... . .++.+.++++.+++.+.+ .......+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHH
Confidence 33456788999999999988899999965321 1 123345566666664433 2234566788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe---------CCEE
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS---------YGLI 328 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~---------~G~i 328 (362)
||++|||||+.+|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. |||+++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999987667899999999999987 99999998 8999
Q ss_pred EEecChhHHhhcCCc
Q 018040 329 EEFDSPTRLLENKSS 343 (362)
Q Consensus 329 ~~~g~~~~l~~~~~~ 343 (362)
++.|+++++..++..
T Consensus 248 ~~~g~~~~~~~~~~~ 262 (274)
T PRK14265 248 VEFSPTEQMFGSPQT 262 (274)
T ss_pred EEeCCHHHHHhCCCC
Confidence 999999999876543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=366.83 Aligned_cols=215 Identities=24% Similarity=0.380 Sum_probs=184.1
Q ss_pred cEEEEEEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHH
Q 018040 115 EVDIHGLQVRYAPH----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~----~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~ 189 (362)
.++++|++++|++. .+++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999742 235999999999999999999999999999999999999999999999999986543 3456
Q ss_pred hcCcEEEcCCCC--CCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 RSRLSIIPQDPT--MFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 r~~i~~v~Q~~~--l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+++++|+||++. ++..|+.+|+.+... .. ++++.++++.+++.+..++ .+.+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 788999999984 566689999975321 12 2445667777777654443 345689999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++|||||+.+|+++||||||++||+.++..+.+.++++. .+.|||++||+++.+..|||+++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998864 378999999999998779999999999999999999986
Q ss_pred hc
Q 018040 339 EN 340 (362)
Q Consensus 339 ~~ 340 (362)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=365.69 Aligned_cols=212 Identities=27% Similarity=0.385 Sum_probs=179.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~~i 193 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.+
T Consensus 2 l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 7899999999753 5999999999999999999999999999999999999999999999999984 22334567889
Q ss_pred EEEcCCCC--CCcccHHhhcCcC---CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPT--MFEGSVHNNLDPL---EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~--l~~~tv~enl~~~---~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++. ++..|+.+|+.+. ..... +++.++++.+++.+. ....+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHHH
Confidence 99999985 4566899998642 11122 234456666666433 2344567999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|++|||||||++||+.++..+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998864 47899999999999976 999999999999999999888654
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=360.63 Aligned_cols=213 Identities=22% Similarity=0.358 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGGL--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECCE--EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 59999999999753 59999999999999999999999999999999999999999999999999887665544 4469
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC----------------C--C----HHHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE----------------Y--A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~----------------~--~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
+|+||++.+|+. |+++|+.+... . . .+.+.++++.++ ++...+..+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG-----------LLEHANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC-----------hhhhhhCCh
Confidence 999999999875 99999875210 0 0 012333344444 344455667
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.+.. + ++|||++||+++.+.. ||++++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 7899999999999999999999999999999999999999999998764 3 7899999999999977 99999999999
Q ss_pred EEEecChhHHhhc
Q 018040 328 IEEFDSPTRLLEN 340 (362)
Q Consensus 328 i~~~g~~~~l~~~ 340 (362)
+++.|+++++.+.
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999988654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-48 Score=358.95 Aligned_cols=224 Identities=23% Similarity=0.380 Sum_probs=184.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECCE--EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 48899999999753 5999999999999999999999999999999999999874 8999999999864 2334
Q ss_pred HHhcCcEEEcCCCCCCcc-cHHhhcCcCC---CC-CHHH----HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 188 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EY-ADEE----IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~-~~~~----~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
.+++.++|+||++.+|+. |+.+|+.+.. .. .+++ ..+.++.+++.+. +.......+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-------VKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-------hhhhhcCCcccCCHHHH
Confidence 567789999999998874 9999996421 11 2222 2333444544322 12233456778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++|||||+++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999987 999999999999999999999
Q ss_pred hhcCCcHHHH
Q 018040 338 LENKSSSFAQ 347 (362)
Q Consensus 338 ~~~~~~~~~~ 347 (362)
+.++...+..
T Consensus 235 ~~~~~~~~~~ 244 (252)
T PRK14272 235 FTNPRDERTE 244 (252)
T ss_pred HhCcCcHHHH
Confidence 8765444433
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=372.11 Aligned_cols=203 Identities=24% Similarity=0.370 Sum_probs=174.8
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++++||+||++.++
T Consensus 2 ~y~~~--~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGDF--KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCCe--eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 56543 59999999999999999999999999999999999999999999999999865 3446678899999999988
Q ss_pred cc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 204 EG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 204 ~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+. |++||+.+.. ... .+++.++++.+++.+.. +....+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 75 9999996521 111 23456677777765433 33446689999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 276 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||||+|||+.+++.+.+.+++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998864 57999999999999987 999999999999999999998654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=356.93 Aligned_cols=210 Identities=24% Similarity=0.386 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 194 (362)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987766544 456899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC---CC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE---YA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~---~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|+||++.+|+. |+++|+.+... .. .+...++++.++ ++.....+...+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999876 99999964211 11 112233333332 13334556677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
+|+++||||||++||+.+++.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999988643 7899999999999987 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-48 Score=363.27 Aligned_cols=220 Identities=27% Similarity=0.378 Sum_probs=186.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCC-HHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIG-LHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~-~~~ 188 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECCE--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 58999999999753 599999999999999999999999999999999999986 6999999999987553 345
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCC----CCCHHH----HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLE----EYADEE----IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~~~~~----~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++++++|+||++.+|+.|+++|+.+.. ....++ +.+.++.+++.+.. .+.+.+.+.+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHHH
Confidence 678899999999999899999997421 122222 23455666664322 234456678899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887656899999999999887 99999999999999999999987
Q ss_pred cCCc
Q 018040 340 NKSS 343 (362)
Q Consensus 340 ~~~~ 343 (362)
.+..
T Consensus 252 ~~~~ 255 (276)
T PRK14271 252 SPKH 255 (276)
T ss_pred CcCc
Confidence 6433
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=367.56 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=180.7
Q ss_pred ccEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----C-C
Q 018040 114 GEVDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----I-G 185 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~-~ 185 (362)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997542 249999999999999999999999999999999999999999999999998752 1 3
Q ss_pred HHHHhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 186 LHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
...+|+.++|+||++ .+|+.|+++|+.+.. .... +.+.++++.+++. +...++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~----------~~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP----------EDYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhHhcCChhhCCHH
Confidence 456778899999998 456779999996531 1222 2233455555542 12334556789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998764 37899999999999876 99999999999999999
Q ss_pred hhHHhhc
Q 018040 334 PTRLLEN 340 (362)
Q Consensus 334 ~~~l~~~ 340 (362)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887653
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=360.39 Aligned_cols=222 Identities=23% Similarity=0.371 Sum_probs=188.4
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC---
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--- 183 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--- 183 (362)
..+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 13 ~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 45679999999999753 599999999999999999999999999999999999875 79999999987642
Q ss_pred -CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC---C-----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 184 -IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 184 -~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
.....+++.++|+||++.+|+.|+++|+.+.. . ..++++.++++.+++.+. +....++.+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCC
Confidence 23345678899999999999889999996421 1 113455667777766432 2334556678899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||+||++|||||+.+|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987667899999999999976 99999999999999999
Q ss_pred hhHHhhcCC
Q 018040 334 PTRLLENKS 342 (362)
Q Consensus 334 ~~~l~~~~~ 342 (362)
++++..++.
T Consensus 244 ~~~~~~~~~ 252 (265)
T PRK14252 244 TDTIFIKPK 252 (265)
T ss_pred HHHHHhCCC
Confidence 999876543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=360.29 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=177.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 11 ~~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 359999999999753 5999999999999999999999999999999999999999999999998753 456789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+|+||++.+|+ .|++||+.+.. ...++++.++++.+++.+.. ++.+.+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 59999997532 12245567778887775433 3445678999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
+++||||||++||+.++..+.+.|.+.. .++|||++||+++.+.. ||+|++|++|++++.++.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998753 37899999999999876 9999999999999988754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=354.44 Aligned_cols=206 Identities=23% Similarity=0.295 Sum_probs=174.9
Q ss_pred cEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 018040 115 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 189 (362)
.++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999997532 24899999999999999999999999999999999999999999999999987766543 2
Q ss_pred -hcCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 -RSRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 -r~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++.++|+||++.+++. |+.+|+.+. .... .+++.++++.+++.+..++ .+.+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence 3579999999998875 999998642 1111 3455667777777554433 345689999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEF 331 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~ 331 (362)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + +.|||++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998864 3 7899999999998877999999999999764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=357.64 Aligned_cols=222 Identities=23% Similarity=0.396 Sum_probs=189.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++||++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +..
T Consensus 3 ~l~~~~v~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 48899999999753 59999999999999999999999999999999999864 4899999999998643 345
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.++++++|+||++.+|+.|+.+|+.+.. . .. .+++.++++.+++.+.+. ..+++.+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHH
Confidence 6778899999999999889999997421 1 11 234556777788765433 2245667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987668899999999999988 9999999999999999999997
Q ss_pred hcCCcHH
Q 018040 339 ENKSSSF 345 (362)
Q Consensus 339 ~~~~~~~ 345 (362)
..+...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 6654444
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=377.85 Aligned_cols=213 Identities=19% Similarity=0.264 Sum_probs=178.0
Q ss_pred EEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE----eCCCCCHHH---Hh-cC
Q 018040 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI----DISSIGLHD---LR-SR 192 (362)
Q Consensus 121 l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~----~i~~~~~~~---~r-~~ 192 (362)
+.++|+.. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++...+... +| ++
T Consensus 30 ~~~~~g~~--~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 30 ILDETGLV--VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHhhCCE--EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 33455433 5899999999999999999999999999999999999999999999996 555554443 33 57
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.++.+. .+.+||||||||++||
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LA 176 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLA 176 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 999999999997 59999997531 112 2345677888887655433 3456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+++|+||||||||++||+.++..+++.|.+.. .++|+|+|||+++++.. ||||++|++|++++.|++++++.++
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 99999999999999999999999999999998764 37999999999999876 9999999999999999999998765
Q ss_pred CcHHH
Q 018040 342 SSSFA 346 (362)
Q Consensus 342 ~~~~~ 346 (362)
...|.
T Consensus 257 ~~~~~ 261 (382)
T TIGR03415 257 ANDYV 261 (382)
T ss_pred chHHH
Confidence 44444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=359.13 Aligned_cols=223 Identities=22% Similarity=0.362 Sum_probs=189.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 187 (362)
.+.+++++++|++. ++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGNF--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 48899999999753 599999999999999999999999999999999999986 799999999998643 333
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
.+++.++|+||++.+|..|+.||+.+... ...+++.++++.+++.+.+.. ..++.+.+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 56778999999999998899999975321 113456778888887554322 23456778999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe--------CCEEEEec
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS--------YGLIEEFD 332 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~--------~G~i~~~g 332 (362)
+|||||+++|++|||||||++||+.++..+.+.+++..+++|+|++||+++.+.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987667899999999999877 99999996 89999999
Q ss_pred ChhHHhhcCCcHHH
Q 018040 333 SPTRLLENKSSSFA 346 (362)
Q Consensus 333 ~~~~l~~~~~~~~~ 346 (362)
+++++++.+...+.
T Consensus 239 ~~~~~~~~~~~~~~ 252 (261)
T PRK14263 239 PTAQIFQNPREQLT 252 (261)
T ss_pred CHHHHHhCCCcHHH
Confidence 99999876443343
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=353.93 Aligned_cols=197 Identities=30% Similarity=0.406 Sum_probs=166.4
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++++|+
T Consensus 1 ~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECCE--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 368999999753 5999999999999999999999999999999999999999999999998763 457789999
Q ss_pred cCCCCC---CcccHHhhcCcCCC-----------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 197 PQDPTM---FEGSVHNNLDPLEE-----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 197 ~Q~~~l---~~~tv~enl~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
||++.+ ++.|++||+.+... ...+++.++++.+++.+.. ...+.+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHH
Confidence 999876 45799999864211 0123456677777665433 3345678999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998864 57899999999999987 9999999986 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-48 Score=349.86 Aligned_cols=200 Identities=28% Similarity=0.374 Sum_probs=171.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999753 2 39999999999999999999999999999999999999999999999876543 3577999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+. |++||+.+... ..++++.++++.+++.+..+. .+.+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999999875 99999964321 123456677777777554443 3456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999998864 37899999999999987 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=340.41 Aligned_cols=172 Identities=33% Similarity=0.571 Sum_probs=159.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
++|++.+|+.|+++|+ ||||||||++|||||+++|+++|
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999987 69999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 276 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
|||||++||+.++..+.+.+++.. +++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998864 47899999999998877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=351.47 Aligned_cols=200 Identities=24% Similarity=0.396 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 4789999999743 59999999999999999999999999999999999999999999999987642 45678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+++. |+++|+.+.. ... .+++.++++.+++.+.. ...+.+||||||||++|||||
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999986421 111 23455666666654433 334567899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 47899999999999877 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=361.11 Aligned_cols=228 Identities=25% Similarity=0.319 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 187 (362)
.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58999999999631 23599999999999999999999999999999999999999999999999998654444
Q ss_pred HHhcCcEEEcCCCC--CCcc-cHHhhcCcC----CCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 188 DLRSRLSIIPQDPT--MFEG-SVHNNLDPL----EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~--l~~~-tv~enl~~~----~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
..++.++|+||++. +++. |+.+|+.+. ... ..+++.++++.+++.+.. ....+.+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCHH
Confidence 55668999999985 4443 788887531 111 124566778888874211 12234568999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+++|++|||||||++||+.+++.+.+.|.+.. .+.|||++||+++.+.. |||+++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998864 37899999999999987 99999999999999999
Q ss_pred hhHHhhcCCc-HHHHHHHHH
Q 018040 334 PTRLLENKSS-SFAQLVAEY 352 (362)
Q Consensus 334 ~~~l~~~~~~-~~~~~~~~~ 352 (362)
++++.+.+.. .+.+++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 234 TADVLASPLHELTKRLIAGH 253 (267)
T ss_pred HHHHhcCCCCHHHHHHHHhc
Confidence 9999876433 344555543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=354.20 Aligned_cols=209 Identities=23% Similarity=0.323 Sum_probs=178.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|+++.|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 59999999999753 5999999999999999999999999999999999999999999999999988777767788999
Q ss_pred EEcCCCCCCcccHHhhcCcC----CC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 195 IIPQDPTMFEGSVHNNLDPL----EE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|+||++.+|+.|+++|+.+. .. ...+++.++++.+++.+ +.....+.+|||||+||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999988999998642 11 12334556677776642 23345567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEe-CCEEEEecChh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLS-YGLIEEFDSPT 335 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~-~G~i~~~g~~~ 335 (362)
+|+++||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+..||++++|+ ++..+++|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998864 3789999999999987799999995 55566777664
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-48 Score=360.25 Aligned_cols=211 Identities=24% Similarity=0.342 Sum_probs=182.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 6899999999753 59999999999999999999999999999999999999999999999999987777777778999
Q ss_pred EcCCCCCC-cccHHhhcCcCCC--------C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 196 IPQDPTMF-EGSVHNNLDPLEE--------Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 196 v~Q~~~l~-~~tv~enl~~~~~--------~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
+||++.++ ..|+++|+.+... . ..+++.++++.+++.+ .....+.+||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH-----------LADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHHH
Confidence 99998654 5699999965310 0 1224556666666543 2344556799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||++.+|+++||||||++||+.+...+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998865 47899999999999976 99999999999999999998754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=363.96 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i 193 (362)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999743 359999999999999999999999999999999999999999999999999852 2234567889
Q ss_pred EEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++ .+++.|+.+|+.+.. ... .+++.++++.+++.+.. ...+.+|||||+||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999997 467789999996421 111 23455677777765432 334567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|+++||||||++||+.++..+.+.+.++. ++.|||++||+++.+.. ||||++|++|++++.|++++++..
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998865 47899999999999886 999999999999999999998653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=352.37 Aligned_cols=207 Identities=27% Similarity=0.364 Sum_probs=171.5
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHh
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r 190 (362)
++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999997531 259999999999999999999999999999999999999999999999999876653 4567
Q ss_pred cCcEEEcCCC--CCC-cccHHhhcCcC----C-CCCHHHH----HHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 191 SRLSIIPQDP--TMF-EGSVHNNLDPL----E-EYADEEI----WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 191 ~~i~~v~Q~~--~l~-~~tv~enl~~~----~-~~~~~~~----~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
+.++|+||++ .++ ..|+++|+.+. . ...++.. .+.++.+++. +...+..+.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 8899999998 344 46999998531 1 1111111 2444555442 1234556677999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
||++|||||+.+|++|||||||++||+.+++.+.+.|++.. + ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998864 3 7899999999999986 9999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=353.53 Aligned_cols=214 Identities=24% Similarity=0.403 Sum_probs=187.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
-+++++++++|++- .+++||||++++||+++|||||||||||++++|+|+|+|++|+|.++|++|+.+++.++ |..|
T Consensus 4 lL~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 47899999999875 59999999999999999999999999999999999999999999999999999998876 4569
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC-------------C------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE-------------E------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~-------------~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+--||.+.+|+. ||.||+.... . ...++..+.|+.++|.+. .++...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-----------a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-----------ADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-----------hcchhhcC
Confidence 999999999976 9999985320 0 112344556666666544 34445668
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|+||++|+.|||||+.+|++|+||||.+||.+.....+.+.|++..+ +.||++|.||++.+.. ||||+||+.|++++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999998764 4899999999999998 99999999999999
Q ss_pred ecChhHHhhcC
Q 018040 331 FDSPTRLLENK 341 (362)
Q Consensus 331 ~g~~~~l~~~~ 341 (362)
+|+|+++.+++
T Consensus 231 eG~P~eV~~dp 241 (250)
T COG0411 231 EGTPEEVRNNP 241 (250)
T ss_pred cCCHHHHhcCH
Confidence 99999998874
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=352.20 Aligned_cols=203 Identities=28% Similarity=0.343 Sum_probs=172.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~~ 192 (362)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 3599999999999999999999999999999999999999999999999998766543 35778
Q ss_pred cEEEcCCCCCC-cccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMF-EGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~-~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.++ ..|+++|+.+.. .... +++.++++.+++.+.. ...+.+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHHH
Confidence 99999999875 469999996521 1222 2345666777665433 334567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
||++.+|++|||||||++||+.+++.+.+.+++.. ++.|+|++||+++.+.. ||||++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998864 47899999999999987 99999999999854
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=374.13 Aligned_cols=211 Identities=20% Similarity=0.326 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDLRS 191 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~ 191 (362)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999753 33 899999999999999999999999999999999999999999999886421 234577
Q ss_pred CcEEEcCCCCCCc-ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 192 RLSIIPQDPTMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 192 ~i~~v~Q~~~l~~-~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+++|+||++.+|+ .|+++|+.+.. ....+++.++++.+++.+..++ .+.+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHHc
Confidence 8999999999986 59999997642 2334567778888877654443 345689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
+|++|||||||++||+.+++.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999987643 6899999999999887 99999999999999999999988764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=358.00 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=186.7
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+.|+++|+++. + +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 37 ~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 346999999985 2 2599999999999999999999999999999999999999999999988 3
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++|++|++.+|+.|+++|+.+.......++.+.++.+++.+.+..++.+.++.+++.+.+||||||||++|||||+.+|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999899999997643333445566777788888888888777788888899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 273 VLVLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+|||||||++||+.++..+.+.+ ....++.|||++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999888754 455567899999999999877999999999999999999998764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=355.74 Aligned_cols=220 Identities=26% Similarity=0.397 Sum_probs=185.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|+. +++|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 5899999999975 359999999999999999999999999999999999975 4 589999999988542 234
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+.. . .. ++++.+.++.+++... +.......+.+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHHH
Confidence 5677899999999998889999986421 1 11 2334455666665422 223455667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|+++||||||++||+.+++.+.+.|++..++.|+|++||+++.+.. ||||++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999887666899999999999977 9999999999999999999998
Q ss_pred hcCCc
Q 018040 339 ENKSS 343 (362)
Q Consensus 339 ~~~~~ 343 (362)
.++..
T Consensus 236 ~~~~~ 240 (252)
T PRK14255 236 LNPKE 240 (252)
T ss_pred cCCCC
Confidence 76543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=351.11 Aligned_cols=200 Identities=27% Similarity=0.445 Sum_probs=169.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i 193 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 4689999999753 59999999999999999999999999999999999999999999999998853 2344567889
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++.+|+ .|++||+.+.. ... .+++.++++.+++.+. +...+.+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhhCccccCHHHHHHHHHH
Confidence 99999999886 59999986521 122 1234555666655433 3444567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
||++.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999987 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=349.84 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=183.1
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHHhcC
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDLRSR 192 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~r~~ 192 (362)
.+.|+.|+|++. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999865 469999999999999999999999999999999999999999999999998765432 234567
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++|++|++.+|+.|+++|+.+......++..++++.+++.+.+...+.++++.++..+.+||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999998654444555677888888888888788888888888899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 273 VLVLDEATASVDTATDNLIQH--TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
++||||||++||+.+++.+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999998887 555443 4689999999999987799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=357.12 Aligned_cols=221 Identities=25% Similarity=0.427 Sum_probs=187.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCC--CCH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISS--IGL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~--~~~ 186 (362)
+.|+++|++++|++. .+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 369999999999753 5999999999999999999999999999999999999985 8999999998743 233
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..+++.++|+||++.+|+.|++||+.+.. .. . .+.+.++++.+++.+++. ...++.+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 45678899999999988899999996421 11 1 234556777777654332 234556778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC-----CEEEE
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY-----GLIEE 330 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~-----G~i~~ 330 (362)
||++|||||+++|++|||||||++||+.+++.+.+.+++.. .++|+|++||+++.+.. ||||++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998753 47999999999999987 999999999 99999
Q ss_pred ecChhHHhhcCCc
Q 018040 331 FDSPTRLLENKSS 343 (362)
Q Consensus 331 ~g~~~~l~~~~~~ 343 (362)
.|+++++.+.+..
T Consensus 237 ~~~~~~~~~~~~~ 249 (261)
T PRK14258 237 FGLTKKIFNSPHD 249 (261)
T ss_pred eCCHHHHHhCCCC
Confidence 9999999876543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=350.46 Aligned_cols=208 Identities=22% Similarity=0.322 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ..++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999742 239999999999999999999999999999999999999999999998875543 2567999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC--C-----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE--E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~--~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+. |+.+|+.+.. . ..++++.++++.+++.+.+++. ...||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL-----------PGQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999998875 9999996421 1 1134566777777765544443 456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+++|+++||||||++||+.+++.+.+.+++.. .++|+|++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998764 37899999999999877 999999999999999999998765
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=356.21 Aligned_cols=223 Identities=22% Similarity=0.361 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe-----CCCCCHHH-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID-----ISSIGLHD- 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-----i~~~~~~~- 188 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 59999999999753 59999999999999999999999999999999999999999999999998 76655443
Q ss_pred ---HhcCcEEEcCCCC--CCc-ccHHhhcCc----CCCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 189 ---LRSRLSIIPQDPT--MFE-GSVHNNLDP----LEEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 189 ---~r~~i~~v~Q~~~--l~~-~tv~enl~~----~~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
+++.++|+||++. ++. .|+.+|+.. ..... .+.+.++++.+++.+ +.+++.+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3557999999984 343 478888742 11111 223344555555431 24456678899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
||||||++|||||+.+|++|||||||++||+.+++.+.+.+++..+ +.|||++||+++.+.. ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987542 7899999999999986 999999999999999
Q ss_pred cChhHHhhcCCcHHHHHH
Q 018040 332 DSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 332 g~~~~l~~~~~~~~~~~~ 349 (362)
|+++++..++...|.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQLL 251 (258)
T ss_pred CCHHHHhcCCCCHHHHHH
Confidence 999999876544554433
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=352.96 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 59999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
++|++.+|.. |+++|+.+.. .. ..+++.++++.+++.+..+. ...+||+|||||++|||||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-----------KPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999865 9999986421 11 13345667777777554443 3456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
+.+|+++||||||++||+.+++.+.+.+++..+ ++|||++||+++.+.. |||+++|++|++++.|+++++...+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999988653 7999999999999877 9999999999999999999887653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=362.78 Aligned_cols=219 Identities=27% Similarity=0.473 Sum_probs=186.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 186 (362)
..|+++|++++|++. ++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 469999999999753 59999999999999999999999999999999999986 6899999999988642 34
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCCC---------------C-----CHHHHHHHHHHcCCChHHHhccccchhhh
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEE---------------Y-----ADEEIWEALDKCQLGNEVRKNEGKLESRV 246 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---------------~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~ 246 (362)
..+++.++|+||++.+|+.|+++|+.+... . .++.+.++++.+++.+. +.+.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHHh
Confidence 466788999999999998899999974210 0 12335566666665432 23445
Q ss_pred ccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE-EEEe
Q 018040 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV-LLLS 324 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri-~vl~ 324 (362)
++++.+||||||||++|||||+++|+||||||||++||+.++..+.+.|++..++.|+|++||+++.+.. |||+ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6678899999999999999999999999999999999999999999999987667899999999999887 9997 5789
Q ss_pred CCEEEEecChhHHhhcC
Q 018040 325 YGLIEEFDSPTRLLENK 341 (362)
Q Consensus 325 ~G~i~~~g~~~~l~~~~ 341 (362)
+|++++.|+++++.+.+
T Consensus 275 ~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 275 GGELVEYDDTDKIFENP 291 (305)
T ss_pred CCEEEEeCCHHHHHhCc
Confidence 99999999999987653
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=356.92 Aligned_cols=223 Identities=22% Similarity=0.296 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCC-----CH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSI-----GL 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~-----~~ 186 (362)
.++++||+++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 58999999999753 5999999999999999999999999999999999999986 49999999988543 23
Q ss_pred HHHhcCcEEEcCCCCCCc-ccHHhhcCcCCC---------------CCHHHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 187 HDLRSRLSIIPQDPTMFE-GSVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
..++++++|+||++.+|+ .|+.+|+.+... ...+++.++++.+++.+. .+..+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCCc
Confidence 456778999999998887 499999964210 012345566666666433 33455
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6789999999999999999999999999999999999999999998864 37899999999998876 99999999999
Q ss_pred EEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 328 IEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 328 i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+++.|+++++ .+ ....+++....
T Consensus 231 i~~~g~~~~~-~~--~~~~~~~~~~~ 253 (262)
T PRK09984 231 VFYDGSSQQF-DN--ERFDHLYRSIN 253 (262)
T ss_pred EEEeCCHHHh-cc--HHHHHHHhhhh
Confidence 9999999986 32 34555554433
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=354.77 Aligned_cols=211 Identities=23% Similarity=0.254 Sum_probs=175.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHH-hcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDL-RSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-r~~ 192 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDK--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECCE--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 4789999999753 5999999999999999999999999999999999995 7999999999999877765554 345
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCC----------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCC-CCChh
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEE----------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE-NWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~----------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~-~LSgG 256 (362)
++|+||++.+|+. |+++|+.+... .. .+++.++++.+++.+. ....... +||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hcccccccCcCHH
Confidence 9999999998875 89998753210 01 1334556666665421 1222333 48999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998865 47899999999999976 79999999999999999
Q ss_pred hhHHh
Q 018040 334 PTRLL 338 (362)
Q Consensus 334 ~~~l~ 338 (362)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 87653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=350.85 Aligned_cols=211 Identities=25% Similarity=0.393 Sum_probs=180.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999865442 4678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+. |+.+|+.+... .. .+++.++++.+++.+.. +....+||+||+||++|||||
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999965321 11 23445666666664333 334467899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
+++|+++||||||++||+.+++.+.+.+.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999999999987643 7899999999999877 9999999999999999999987653
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=355.71 Aligned_cols=226 Identities=27% Similarity=0.385 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC------EeCCCCCHH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG------IDISSIGLH 187 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g------~~i~~~~~~ 187 (362)
..+.++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 9 ~~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 359999999999753 599999999999999999999999999999999999999997766665 555555556
Q ss_pred HHhcCcEEEcCCCCCCcc-cHHhhcCcCC---CC-CH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 188 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EY-AD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~-~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
.+++.++|+||++.+|++ |+++|+.+.. .. .. +.+.++++.+++.+.+ ....++.+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 678889999999998875 9999997421 11 12 2345666777765422 1233456678999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++||||++.+|+++||||||++||+.+++.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999887667999999999999976 999999999999999999999
Q ss_pred hhcCCcHHHHH
Q 018040 338 LENKSSSFAQL 348 (362)
Q Consensus 338 ~~~~~~~~~~~ 348 (362)
.+++...+.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 87755445443
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=380.05 Aligned_cols=230 Identities=27% Similarity=0.351 Sum_probs=193.7
Q ss_pred ccEEEEEEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC--C
Q 018040 114 GEVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI--S 182 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~---------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i--~ 182 (362)
..++++|++++|... ...+++||||++++||++||||+||||||||.++|+|+++|++|+|.++|.+. +
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 458899999999731 23589999999999999999999999999999999999999999999999872 2
Q ss_pred CCCHHHHhcCcEEEcCCCCC--Cc-ccHHhhcCc----CCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCC
Q 018040 183 SIGLHDLRSRLSIIPQDPTM--FE-GSVHNNLDP----LEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 183 ~~~~~~~r~~i~~v~Q~~~l--~~-~tv~enl~~----~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
.-.....|+++-+|||||+- .+ .||.+++.. ... ...+++.+.++.+++... .+++++.
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~ 428 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPH 428 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCch
Confidence 22234567889999999963 33 499988842 111 112456777888888632 4455667
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+||||||||+||||||+.+|+++|+|||||+||+.++..+.++|+++. -|.|.|+||||+..++. ||||+||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 789999999999999999999999999999999999999999998864 37899999999999999 999999999999
Q ss_pred EEecChhHHhhcCCcHHHHHHHHHh
Q 018040 329 EEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 329 ~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+|.|+.+++++++...|.+.+.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~~av 533 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLLAAV 533 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHHHhc
Confidence 9999999999998888988776543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=351.05 Aligned_cols=210 Identities=23% Similarity=0.388 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999974 28999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+ .|+.||+.+.. .. ..+++.++++.+++.+..+ +.+.+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHH
Confidence 999999886 59999996421 11 1234556677777655443 33456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
+.+|++++|||||++||+.+++.+.+.+++... ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999988642 7999999999999887 9999999999999999999887654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=345.37 Aligned_cols=201 Identities=21% Similarity=0.361 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|+. .++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 468999999963 468999999999999999999999999999999999999999999999986543 35678999
Q ss_pred EcCCCCCCcc-cHHhhcCcC-C-C-----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPL-E-E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~-~-~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|.. |+.+|+.+. . . ..+.++.++++.+++.+..++ .+.+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR-----------LPEQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999998874 999998642 1 1 123455667777777554443 3446899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
+.+|+++||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999998864 37899999999999876 99999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=351.76 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=180.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEeCCCCCHHHHh
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~r 190 (362)
.++++|++++| + .++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 2599999999999999999999999999999999999999 999999999988532 2234
Q ss_pred cCcEEEcCCCC-CCc--ccHHhhcCc-----CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPT-MFE--GSVHNNLDP-----LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~-l~~--~tv~enl~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
+.++|+||++. .|. .|+.+|+.. .....++++.++++.+++.+. .+.+++.+.+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 57999999985 343 377777532 112234567778888877542 12345566789999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.|++.. .+.|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998764 37899999999999976 99999999999999999999987
Q ss_pred cCCc
Q 018040 340 NKSS 343 (362)
Q Consensus 340 ~~~~ 343 (362)
++..
T Consensus 231 ~~~~ 234 (254)
T PRK10418 231 APKH 234 (254)
T ss_pred CCCC
Confidence 6543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=345.00 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=176.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999998875321 357999
Q ss_pred EcCCCCCCc-ccHHhhcCcC---CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPL---EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+||++.++. .|+++|+.+. ......++.++++.+++.+..+. .+.+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998642 12345567778888887654433 34568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998864 47899999999999976 99999999999999998765
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=370.19 Aligned_cols=211 Identities=23% Similarity=0.331 Sum_probs=178.2
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhcCcEE
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDLRSRLSI 195 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 195 (362)
|++++|++. .+ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999753 35 999999999999999999999999999999999999999999999986432 2245778999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+||++.+|+. |+++|+.+... .. .+++.++++.+++.+. .+..+.+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 99999975321 11 2235666776666443 344456789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
+|++|||||||++||+.+++.+.+.|++.. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 999999999999999999999999998864 3 7899999999999887 99999999999999999999987654333
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-47 Score=355.78 Aligned_cols=211 Identities=26% Similarity=0.336 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--------ccEEEECCEeCCCCCHH
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--------AGLIAIDGIDISSIGLH 187 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~--------~G~I~i~g~~i~~~~~~ 187 (362)
|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998777766
Q ss_pred HHhcCcEEEcCCCC-CCcccHHhhcCcCCC--------C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 188 DLRSRLSIIPQDPT-MFEGSVHNNLDPLEE--------Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~-l~~~tv~enl~~~~~--------~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
.+++.++|+||++. ++..|++||+.+... . ..+.+.++++.+++. +.++..+.+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCH
Confidence 77778999999986 467799999965310 0 122345566666553 344556678999
Q ss_pred hHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEE
Q 018040 256 GQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 256 GqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
|||||++|||||+ .+|++|||||||++||+.+++.+.+.+++.. + ++|+|+|||+++.+.. ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 5999999999999999999999999998864 3 7899999999999976 9999999
Q ss_pred eCCEEEEecChhHHhh
Q 018040 324 SYGLIEEFDSPTRLLE 339 (362)
Q Consensus 324 ~~G~i~~~g~~~~l~~ 339 (362)
++|++++.|+++++.+
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999998865
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=352.73 Aligned_cols=201 Identities=25% Similarity=0.271 Sum_probs=171.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999975 3599999999999999999999999999999999999999999999999987542 246899
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+++ .|+.+|+.+.. ... .+++.++++.+++.+.. ...+.+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999998887 59999996421 111 23456667777664433 334567899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-c-CCceEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQH-F-SDCTVITIAHRITSVID-SDMVLLLS--YGLIEEFDSP 334 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~-~-~~~tvi~itH~l~~~~~-~Dri~vl~--~G~i~~~g~~ 334 (362)
+.+|++|||||||++||+.++..+.+.|++. . .++|||++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999886 3 47999999999999887 99999999 5999998754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=332.78 Aligned_cols=171 Identities=39% Similarity=0.675 Sum_probs=158.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997643359999999999999999999999999999999999999999999999999877776677888999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+||++.+|+.|+.||+ ||||||||++||||++.+|+++|
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999888999887 69999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 276 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
|||||++||+.++..+.+.+++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999988766799999999999997899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=348.67 Aligned_cols=222 Identities=21% Similarity=0.322 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe-----CCCCCHHH-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID-----ISSIGLHD- 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-----i~~~~~~~- 188 (362)
.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 58999999999753 58999999999999999999999999999999999999999999999987 65555433
Q ss_pred ---HhcCcEEEcCCCCC--C-cccHHhhcCc----CCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 189 ---LRSRLSIIPQDPTM--F-EGSVHNNLDP----LEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 189 ---~r~~i~~v~Q~~~l--~-~~tv~enl~~----~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
+++.++|++|++.. + ..|+.+|+.. ... ...+.+.++++.+++.+ +..+..+.+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 24579999999852 2 3477777632 111 11234455555555531 23455667899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
||||||++|||||+.+|++|||||||++||+.+++.+.+.+++.. .+.|+|++||+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998753 37899999999999987 999999999999999
Q ss_pred cChhHHhhcCCcHHHHH
Q 018040 332 DSPTRLLENKSSSFAQL 348 (362)
Q Consensus 332 g~~~~l~~~~~~~~~~~ 348 (362)
|+++++..++...|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQL 247 (253)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987654455443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=350.66 Aligned_cols=224 Identities=25% Similarity=0.333 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-
Q 018040 115 EVDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL- 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~- 186 (362)
.|+++||+++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 48999999999741 2469999999999999999999999999999999999999999999999999876654
Q ss_pred --HHHhcCcEEEcCCCC--CCc-ccHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 187 --HDLRSRLSIIPQDPT--MFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 187 --~~~r~~i~~v~Q~~~--l~~-~tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
..+++.++|+||++. +++ .|+.+|+.+. .... ...+.++++.+++.. ...+..+.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 245778999999983 443 5899987421 1111 123455666555531 1334556789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 9999999999999999999999999999999999999999998764 27899999999999987 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHH
Q 018040 331 FDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~~~~~ 349 (362)
.|+++++... ...|...+
T Consensus 233 ~g~~~~~~~~-~~~~~~~~ 250 (268)
T PRK10419 233 TQPVGDKLTF-SSPAGRVL 250 (268)
T ss_pred eCChhhccCC-CCHHHHHH
Confidence 9999998754 44444433
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=330.90 Aligned_cols=172 Identities=32% Similarity=0.488 Sum_probs=157.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--HHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r~~i 193 (362)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 1 i~~~~l~~~~~~~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECCe--EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987665 45667889
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
+|++|++.+|.. |+++|+.+. ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999988864 999998642 69999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
++||||||++||+.++..+.+.+++..+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988653 6899999999999986 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=342.80 Aligned_cols=202 Identities=22% Similarity=0.317 Sum_probs=171.2
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 190 (362)
++++|+++.|+++. ..+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997531 4699999999999999999999999999999999999999999999999998765533 356
Q ss_pred cCcEEEcCCCCCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 191 SRLSIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+.++|+||++.+|. .|+.+|+.+.. ... .+++.++++.+++.+..+. .+.+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----------YPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHH
Confidence 78999999999887 59999996421 112 2245566777766544443 3456899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
+|||||+++|+++||||||++||+.+++.+.+.|++.. .++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998764 37999999999986655999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=329.69 Aligned_cols=170 Identities=28% Similarity=0.510 Sum_probs=155.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+||++.+|.. |+.+|+. |||||+||++|||||+.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988875 9999873 7999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
||||||++||+.+++.+.+.|++.. ++.|+|++||+.+.+.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999998864 46899999999999986 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=340.45 Aligned_cols=197 Identities=23% Similarity=0.321 Sum_probs=166.5
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHhcCcEE
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHDLRSRLSI 195 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~ 195 (362)
||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999864 24 99999999 99999999999999999999999999999999999987532 22345778999
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC-C----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE-Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+||++.+|+ .|+++|+.+... . .++++.++++.+++.+ ..+..+.+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHHHHHHHhc
Confidence 999999886 499999864321 1 1234556666666543 3344567789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+|+++||||||++||+.+++.+.+.+++.. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998864 3 7899999999999976 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=386.85 Aligned_cols=225 Identities=24% Similarity=0.346 Sum_probs=187.5
Q ss_pred cEEEEEEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 018040 115 EVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185 (362)
Q Consensus 115 ~i~~~~l~~~y~~~---------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 185 (362)
.++++|+++.|+.. ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 135899999999999999999999999999999999999999999999999987665
Q ss_pred HH---HHhcCcEEEcCCC--CCCc-ccHHhhcCcC---CCC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCC
Q 018040 186 LH---DLRSRLSIIPQDP--TMFE-GSVHNNLDPL---EEY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 186 ~~---~~r~~i~~v~Q~~--~l~~-~tv~enl~~~---~~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
.. .+|++|+||||++ .+++ .|+.+|+.+. ... . .+++.++++.+++.. ......+.
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCCcc
Confidence 33 3567899999998 3665 4999998531 111 1 234566777777742 12233456
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++.. .+.|||+||||++.+.. ||||++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 689999999999999999999999999999999999999999998864 37899999999999987 999999999999
Q ss_pred EEecChhHHhhcCCcHHHHHH
Q 018040 329 EEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 329 ~~~g~~~~l~~~~~~~~~~~~ 349 (362)
++.|++++++.++...|.+.+
T Consensus 543 v~~g~~~~i~~~p~~~~~~~l 563 (623)
T PRK10261 543 VEIGPRRAVFENPQHPYTRKL 563 (623)
T ss_pred EEecCHHHHhcCCCCHHHHHH
Confidence 999999999877666665533
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=344.77 Aligned_cols=208 Identities=28% Similarity=0.413 Sum_probs=177.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 58999999999753 599999999999999999999999999999999999999999999987 23699
Q ss_pred EEcCCCCCCc---ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 195 IIPQDPTMFE---GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 195 ~v~Q~~~l~~---~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
|+||++.++. .|+.+|+.......++++.++++.+++.+..+. .+.+||||||||++|||||+.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999987764 378888754333445677888888887655433 34568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
+++||||||++||+.++..+.+.|++.. + ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+. ..+.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 9999999999999999999999998764 3 7899999999999877 999999965 79999999998653 345554
Q ss_pred H
Q 018040 349 V 349 (362)
Q Consensus 349 ~ 349 (362)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-46 Score=348.84 Aligned_cols=209 Identities=23% Similarity=0.303 Sum_probs=173.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 59999999999643 359999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcCCCCC---CcccHHhhcCcCC-----------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 195 IIPQDPTM---FEGSVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 195 ~v~Q~~~l---~~~tv~enl~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
|+||++.+ +..++++|+.+.. ....+.+.++++.+++.+.. .....+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-----------HRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHH
Confidence 99999865 3447888875310 01123455667777765433 33456799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998864 47899999999999877 9999777 89999999999876
Q ss_pred h
Q 018040 339 E 339 (362)
Q Consensus 339 ~ 339 (362)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=376.82 Aligned_cols=212 Identities=22% Similarity=0.359 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh-cCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~i 193 (362)
.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.+
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSGV--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 59999999999753 599999999999999999999999999999999999999999999999998776655544 469
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCC---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEY---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||++.+++. |+.+|+.+.... ..+++.++++.+++.+. ......+|||||||||+|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999988865 999999764221 13456667777776433 233456689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998764 47899999999999987 99999999999999999988754
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=335.36 Aligned_cols=190 Identities=22% Similarity=0.264 Sum_probs=161.1
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 189 (362)
.+.++|++|.|+.. ..++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999753 4579999999999999999999999999999999999999 89999999999987653 346
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
++.++|+||++.+|+. |+++|+.+.... . ..+....||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 7789999999988864 999998643110 0 22345678999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEe-cChhhhhh-cCeEEEEeCCEEEEec
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIA-HRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
++|+++||||||++||+.+++.+.+.+++..+ +.|+|+++ |+.+.+.. ||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998643 46666655 55677766 9999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=369.77 Aligned_cols=229 Identities=26% Similarity=0.371 Sum_probs=193.8
Q ss_pred cEEEEEEEEEeCCCCC--ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC----ccEEEECCEeCCCCCHHH
Q 018040 115 EVDIHGLQVRYAPHLP--LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT----AGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~--~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~----~G~I~i~g~~i~~~~~~~ 188 (362)
.++++|+++.|..... .+++||||+|.+||++||||+|||||||+.++|+|++++. +|+|.++|.++..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5999999999975432 4899999999999999999999999999999999999987 799999999998887654
Q ss_pred H---h-cCcEEEcCCCC-CCc--ccHHhhcC----cCCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 189 L---R-SRLSIIPQDPT-MFE--GSVHNNLD----PLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 189 ~---r-~~i~~v~Q~~~-l~~--~tv~enl~----~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+ | ++|+||||+|. .++ .|+.+-+. .... ...++..+.++.+++.+.... ...+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4 3 46999999984 333 36655542 1111 234556778888988764433 3456778
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||+.||+||+.+|++||+||||++||+.++.+|+++|+++. .|.++|+||||+..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 57999999999999998 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHHHHH
Q 018040 331 FDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
.|+++++++++...|.+.+.+.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh
Confidence 9999999999888887776443
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=323.78 Aligned_cols=217 Identities=28% Similarity=0.402 Sum_probs=187.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----------
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI---------- 184 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~---------- 184 (362)
.++++|+.++|+.. .+|++||++.++|+.+.|+|.|||||||+|+||.=+..|+.|+|.++|+.|.-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58999999999876 499999999999999999999999999999999999999999999999987421
Q ss_pred C---HHHHhcCcEEEcCCCCCCc-ccHHhhcCcC-----C---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 185 G---LHDLRSRLSIIPQDPTMFE-GSVHNNLDPL-----E---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 185 ~---~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~-----~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
+ .+.+|.+.++|||+..|++ .|+.||+--. . ....++.+..|.++|+.+..+.. +..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----------P~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY-----------PAH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC-----------ccc
Confidence 2 2346788999999999985 5999998421 1 11234456677888887665544 455
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||+||++|||||+.+|+++++|||||+|||+-.-.+++.++++. +|+|.++|||.+.++.+ +.+|++|++|+|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 79999999999999999999999999999999999999999999875 68999999999999999 99999999999999
Q ss_pred ecChhHHhhcCCcH
Q 018040 331 FDSPTRLLENKSSS 344 (362)
Q Consensus 331 ~g~~~~l~~~~~~~ 344 (362)
.|+|++++.+|.+.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999987653
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=326.26 Aligned_cols=213 Identities=26% Similarity=0.374 Sum_probs=185.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+.+|++++..++ .+|+++||++++||+++|+||||||||||||.|+|.+.|++|++.++|.++..++..++.++-+
T Consensus 1 mi~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 37889999998765 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHhhcCcCC-------CC-CHHH-HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 195 IIPQDPTM-FEGSVHNNLDPLE-------EY-ADEE-IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 195 ~v~Q~~~l-~~~tv~enl~~~~-------~~-~~~~-~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++||+..+ |+.||+|-+.++. +. .+++ ..+++.++++..+..+ ....|||||||||.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHH
Confidence 99999876 7889999886532 11 1222 5677888877655443 3346899999999999
Q ss_pred HHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 265 RVLLK------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 265 ral~~------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|.|++ ++++|+||||||+||...+..+++..+++. ++..|+.|-||++.... ||||++|++||+++.|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99987 345999999999999999999999999875 57999999999999876 99999999999999999999
Q ss_pred Hhhc
Q 018040 337 LLEN 340 (362)
Q Consensus 337 l~~~ 340 (362)
++..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 9875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-46 Score=339.74 Aligned_cols=203 Identities=26% Similarity=0.307 Sum_probs=169.2
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHHh
Q 018040 116 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~r 190 (362)
+.++|++++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6789999999765 2579999999999999999999999999999999999999 99999999999874 24567
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcCCC-----C-CHH----HHHH-HHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPLEE-----Y-ADE----EIWE-ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~~~-----~-~~~----~~~~-~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
+.++|+||++.+|+. |++||+.+... . ... ...+ .++.++ +.....+...+|||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----------LTRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhc-----------chhhhcccccCcCHHHH
Confidence 889999999999876 99999964211 0 111 1111 233333 33334556678999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecCh-hhhhh-cCeEEEEeCCEEEEec
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRI-TSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l-~~~~~-~Dri~vl~~G~i~~~g 332 (362)
||++|||||+++|+++||||||++||+.++..+.+.+++.. ++.|+|++||++ +.+.. ||++++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998764 478999999998 46666 9999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-46 Score=377.57 Aligned_cols=212 Identities=22% Similarity=0.317 Sum_probs=180.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 58999999999753 5999999999999999999999999999999999999999999999999997766544 34679
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC-------CC---C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE-------EY---A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~-------~~---~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
+|+||++.+++. |+++|+.+.. .. . .+++.++++.+++.+. .+....+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHH
Confidence 999999988865 9999986421 10 1 1334556666666432 3344567899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||+|||||+.+|++|||||||++||+.++..+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998864 47899999999999987 99999999999999999887
Q ss_pred Hhh
Q 018040 337 LLE 339 (362)
Q Consensus 337 l~~ 339 (362)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 643
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=331.99 Aligned_cols=185 Identities=26% Similarity=0.340 Sum_probs=161.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-hcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 192 (362)
++++|++++|++. ++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGGK--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCCE--EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 4689999999753 599999999999999999999999999999999999 58999999999999987765544 456
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
++|+||++.++++ ++++++ .. ...+||||||||++||||++.+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999988875 555554 00 11358999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhh--hcCeEEEEeCCEEEEecChhHHh
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI--DSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~--~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999998864 4789999999999988 59999999999999999 44453
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=376.63 Aligned_cols=211 Identities=22% Similarity=0.313 Sum_probs=180.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHH-Hhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHD-LRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~r~ 191 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .++
T Consensus 5 ~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGGV--KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCCe--EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 59999999999753 599999999999999999999999999999999999996 8999999999997666543 457
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCCC------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLEE------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~~------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
.++|+||++.+++. |++||+.+... .. .+++.++++.+++.+. .+....+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHHHH
Confidence 79999999988864 99999975321 11 1345566666665432 334456789999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++|||||+.+|++|||||||++||+.++..+.+.|.+.. +++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998864 57899999999999987 9999999999999999988764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=332.67 Aligned_cols=182 Identities=26% Similarity=0.359 Sum_probs=159.9
Q ss_pred cEEEEEEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHH
Q 018040 115 EVDIHGLQVRYAPH----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~----~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~ 188 (362)
.++++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 246999999999999999999999999999999999999 9999999999998864 25
Q ss_pred HhcCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 189 LRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+++.++|+||++.+|.. |+++|+.+.. ... +||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KLR---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hhc---------------------cCCHHHHHHHHHHHHH
Confidence 67789999999988864 9999884210 000 5899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChh-hhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRIT-SVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++ .+.. ||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 4799999999996 5665 9999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=376.04 Aligned_cols=211 Identities=22% Similarity=0.299 Sum_probs=179.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPGV--KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCCe--EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 48999999999753 5999999999999999999999999999999999999999999999999986554433 35679
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC-------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~-------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+|+||++.+++. |++||+.+... .. .+++.++++.+++.+. ......+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHHH
Confidence 999999988864 99999975311 11 1234556666666432 2334556899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+|||||+.+|++|||||||++||+.++..+.+.+++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998764 47899999999999987 9999999999999999887763
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=341.50 Aligned_cols=211 Identities=22% Similarity=0.253 Sum_probs=175.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHHhc-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDLRS- 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~r~- 191 (362)
.++++|++++|++. .+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 59999999999753 599999999999999999999999999999999998 6899999999999988776555444
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCCC----------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCC-CCCh
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLEE----------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE-NWSM 255 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~~----------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~-~LSg 255 (362)
.++|++|++.+++. |+.+|+.+... .. .+++.++++.+++.+ +.++.... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999988875 78888753210 01 123445666666542 12233333 4899
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEec
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g 332 (362)
|||||++|||||+++|+++||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998864 47999999999999875 8999999999999999
Q ss_pred ChhHH
Q 018040 333 SPTRL 337 (362)
Q Consensus 333 ~~~~l 337 (362)
+++..
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 98743
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=327.46 Aligned_cols=177 Identities=32% Similarity=0.473 Sum_probs=157.7
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3599999999999999999999999999999999999999999999999999877777777889999
Q ss_pred cCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEE
Q 018040 197 PQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276 (362)
Q Consensus 197 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illL 276 (362)
|| +++.+++.+... ..+.+||||||||++||||++.+|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 566666654332 34567899999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 277 DEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 277 DEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
||||++||+.+.+.+.+.+.+..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999988653 7899999999999876 9999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=334.67 Aligned_cols=193 Identities=26% Similarity=0.352 Sum_probs=162.3
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHHhcCc
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDLRSRL 193 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~r~~i 193 (362)
++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGDK--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECCE--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 46899999753 59999999999999999999999999999999999999999999999999754432 2356789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+|++|++.+|+ .|++||+.+.. .. ..+++.++++.+++.+. .+....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHHH
Confidence 99999999887 59999996521 11 13445667777766433 33345678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
||+++|++|||||||++||+.+++.+.+.+++.. ++.|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 478999999999977669999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=327.70 Aligned_cols=172 Identities=27% Similarity=0.446 Sum_probs=154.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i 193 (362)
.++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999887653 3457789
Q ss_pred EEEcCCC---CCCc-ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDP---TMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~---~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||++ .+++ .|++||+.+... ||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3454 599999854210 69999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998864 47899999999999988 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=330.17 Aligned_cols=181 Identities=22% Similarity=0.289 Sum_probs=158.3
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHHh
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~r 190 (362)
.++++|++++|++. .+++|+++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999752 246999999999999999999999999999999999986 489999999999874 4567
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
++++|++|++.+|+. |+++|+.+.. .++ +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 789999999988875 9999985310 000 589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhh-cCeEEEEeC-CEEEEec
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VID-SDMVLLLSY-GLIEEFD 332 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~-~Dri~vl~~-G~i~~~g 332 (362)
+|+++||||||++||+.++..+.+.+++.. +++|+|++||+++. +.. ||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998864 47999999999984 554 999999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=340.82 Aligned_cols=205 Identities=22% Similarity=0.299 Sum_probs=173.5
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|+++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 46777774 179999999999999999999999999999999999865 99999999999877777777789999
Q ss_pred cCCCCCC-cccHHhhcCcCCC--CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 197 PQDPTMF-EGSVHNNLDPLEE--YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 197 ~Q~~~l~-~~tv~enl~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
||++.++ ..|+++|+.+... .. .+++.++++.+++.+ .....+..||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-----------KLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9998655 5699999975421 11 234556666666543 3344566789999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 270 -------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 270 -------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998864 47899999999998877 99999999999999999988864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=337.15 Aligned_cols=206 Identities=24% Similarity=0.298 Sum_probs=169.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEeCCCCCHHHHhcCcEEEcCCCC-CC-c-
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT-MF-E- 204 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~-~- 204 (362)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 47899999999999999999999999999999999999 899999999988643 222357999999985 34 3
Q ss_pred ccHHhhcCcC----CCC---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEe
Q 018040 205 GSVHNNLDPL----EEY---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277 (362)
Q Consensus 205 ~tv~enl~~~----~~~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLD 277 (362)
.|+.+|+.+. ... ..+++.++++.+++.+. ++..+..+.+||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4888886421 111 12346677777776521 13345566789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHHH
Q 018040 278 EATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347 (362)
Q Consensus 278 EPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 347 (362)
|||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++...+...+.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 9999999999999999998864 37899999999999986 9999999999999999999998765444443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=338.28 Aligned_cols=190 Identities=22% Similarity=0.319 Sum_probs=157.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc-CCCCCCc-ccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP-QDPTMFE-GSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~~-~tv~ 208 (362)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.++. .|++
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcHH
Confidence 599999999999999999999999999999999999999999999999986542 235677899998 5566664 5999
Q ss_pred hhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 209 NNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 209 enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
+|+.+.. .... +.+.++++.+++.+. ......+||||||||++|||||+.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-----------LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 9985421 1222 233445555555432 233455689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 282 SVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+||+.+++.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999998864 36899999999999877 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=370.78 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=180.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 48999999999753 4999999999999999999999999999999999999999999999998876666556677899
Q ss_pred EEcCCCCC--C-------cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPTM--F-------EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~l--~-------~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++.+ + ..|+++|+.... ...+++.++++.+++.+.. +....+||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHHHHH
Confidence 99998753 1 347888875421 1245567778877765433 3344568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998864 47899999999999988 999999999999999999887653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=373.99 Aligned_cols=220 Identities=25% Similarity=0.392 Sum_probs=182.4
Q ss_pred cEEEEEEEEEeCC---------CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 018040 115 EVDIHGLQVRYAP---------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185 (362)
Q Consensus 115 ~i~~~~l~~~y~~---------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 185 (362)
.++++|++++|+. +..++|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 5999999999962 12359999999999999999999999999999999999985 8999999999987655
Q ss_pred HHH---HhcCcEEEcCCC--CCCc-ccHHhhcCcCC-----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 186 LHD---LRSRLSIIPQDP--TMFE-GSVHNNLDPLE-----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 186 ~~~---~r~~i~~v~Q~~--~l~~-~tv~enl~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
... ++++++|+||++ .+++ .|+.+|+.+.. ... .+++.++++.+++.+ ......+
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 432 467899999997 3665 49999986421 011 234556677776642 1223445
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|||+|||+++.+.. ||||++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 6789999999999999999999999999999999999999999998864 37899999999999987 99999999999
Q ss_pred EEEecChhHHhhcCCcHH
Q 018040 328 IEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 328 i~~~g~~~~l~~~~~~~~ 345 (362)
+++.|+++++++.+...|
T Consensus 504 i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 504 VVEQGDCERVFAAPQQEY 521 (529)
T ss_pred EEEEcCHHHHhcCCCChH
Confidence 999999999987654444
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=319.08 Aligned_cols=164 Identities=27% Similarity=0.350 Sum_probs=148.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999643 35999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
++|++.+++.|++||+.+. .+.+||||||||++||||++++|+++|
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998642 235689999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 276 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
|||||++||+.+++.+.+.+++. ++|+|++||+++....||++++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999876 589999999998776699999999863
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=316.23 Aligned_cols=159 Identities=29% Similarity=0.494 Sum_probs=147.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i~ 194 (362)
++++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 599999999999999999999999999999999999999999999999998876653 4567899
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|+|| ||||||||++||||++++|+++
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 6999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
||||||++||+.+++.+.+.+++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998864 47899999999998877 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=369.78 Aligned_cols=220 Identities=23% Similarity=0.372 Sum_probs=181.6
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 187 (362)
.++++|++++|++. ..++|+++||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 59999999999642 23699999999999999999999999999999999999987 799999999998766543
Q ss_pred H---Hh-cCcEEEcCCCC--CCc-ccHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 188 D---LR-SRLSIIPQDPT--MFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 188 ~---~r-~~i~~v~Q~~~--l~~-~tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
. +| +++||+||++. +++ .|+.+|+.+. .... .+++.++++.+++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 2 33 57999999985 444 4888887421 1111 24566778888775321 122345567
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999999998864 37899999999999887 9999999999999
Q ss_pred EecChhHHhhcCC
Q 018040 330 EFDSPTRLLENKS 342 (362)
Q Consensus 330 ~~g~~~~l~~~~~ 342 (362)
+.|++++++..+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999876543
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-45 Score=327.08 Aligned_cols=194 Identities=25% Similarity=0.327 Sum_probs=166.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4789999999753 5899999999999999999999999999999999999999999999999876433 456788999
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
+||++.++. .|+++|+.+... ..++++.++++.+++.+.. .....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-----------DRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998774 699999976432 3456677888888875432 233456899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEE
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
+||||||++||+.+++.+.+.+++.. +++|+|++||+...+.. |++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47899999999877766 9999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=311.24 Aligned_cols=206 Identities=24% Similarity=0.301 Sum_probs=175.1
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 189 (362)
-|+++++++..+.. .-.+|++|+|.|++||.++||||||||||||+-+++|+..|++|+|++.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888877643 235899999999999999999999999999999999999999999999999999887653 4
Q ss_pred h-cCcEEEcCCCCCCc-ccHHhhcCcC---CC--C--CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 R-SRLSIIPQDPTMFE-GSVHNNLDPL---EE--Y--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 r-~~i~~v~Q~~~l~~-~tv~enl~~~---~~--~--~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
| +++|||||...|.+ .|..||+... .. . ......+.++.+|+.+.+.+ .+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-----------yP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-----------YPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-----------CccccCchHHHH
Confidence 4 57999999998876 4999998632 11 1 22345677888877655444 455679999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEF 331 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~ 331 (362)
|+||||++-.|++|+.||||.+||..|.+.|.+++-.+. .|.|.|+||||...+.+|||++-|.+|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999987653 57999999999999999999999999999753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=379.17 Aligned_cols=224 Identities=23% Similarity=0.322 Sum_probs=183.3
Q ss_pred ccEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC---------
Q 018040 114 GEVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--------- 182 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--------- 182 (362)
..|+++|++++|+.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 369999999999632 235999999999999999999999999999999999999999999999997552
Q ss_pred -CCCHH---HHh-cCcEEEcCCC--CCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhh
Q 018040 183 -SIGLH---DLR-SRLSIIPQDP--TMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRV 246 (362)
Q Consensus 183 -~~~~~---~~r-~~i~~v~Q~~--~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~ 246 (362)
..+.. .+| ++||||+|+| .+++ .|+.+|+.+.. ... .+++.++++.+++.+. +..+
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 12222 233 4799999998 5665 49999986421 112 2355667777776421 1233
Q ss_pred ccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEE
Q 018040 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
.+.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.++++. + ++|||+|||+++.+.. ||||++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 45567799999999999999999999999999999999999999999998864 3 7899999999999987 9999999
Q ss_pred eCCEEEEecChhHHhhcCCcHH
Q 018040 324 SYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 324 ~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
++|++++.|++++++..+...|
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred eCCeecccCCHHHhhcCCCChh
Confidence 9999999999999876544344
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=334.45 Aligned_cols=210 Identities=22% Similarity=0.260 Sum_probs=167.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHHh-cC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDLR-SR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~r-~~ 192 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ +.
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 7899999999753 5999999999999999999999999999999999995 69999999999998776655544 56
Q ss_pred cEEEcCCCCCCcc-cHHhhcCc-------CCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCC-CCCChh
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDP-------LEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENG-ENWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~-------~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g-~~LSgG 256 (362)
++|++|++.+++. +..+++.. ... .. .+.+.+.++.+++.+ ....... .+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE----------DLLTRSVNVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh----------hhcccCCCCCCCHH
Confidence 9999999977654 44433211 100 01 112233344444321 1112223 269999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g~ 333 (362)
||||++||||++++|++|||||||++||+.+++.+.+.++++. .++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 9999999999999999999999999999999999999998765 46899999999999886 79999999999999999
Q ss_pred hhHH
Q 018040 334 PTRL 337 (362)
Q Consensus 334 ~~~l 337 (362)
++.+
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=327.79 Aligned_cols=194 Identities=25% Similarity=0.349 Sum_probs=166.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 7899999999753 5999999999999999999999999999999999999999999999999986543 346778999
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
++|++.+++ .|+.||+.+... ...+++.++++.+++.+..+ ....+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 599999964321 23456677888888754432 33456899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEE
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998764 47899999999999987 5788776
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=367.79 Aligned_cols=207 Identities=19% Similarity=0.290 Sum_probs=175.0
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCcEEE
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRLSII 196 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v 196 (362)
++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++.++|+
T Consensus 1 ~~nl~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGV--KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCCE--EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 36899999753 599999999999999999999999999999999999999999999999998755433 456789999
Q ss_pred cCCCCCCc-ccHHhhcCcCC----C--CCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 197 PQDPTMFE-GSVHNNLDPLE----E--YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 197 ~Q~~~l~~-~tv~enl~~~~----~--~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||++.++. .|+++|+.+.. . ... +++.++++.+++.+ .....+.+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 99998775 49999987531 1 111 23445555555432 334456679999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999998864 57899999999999987 999999999999999998776
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=366.85 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=176.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i 193 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 58999999999753 59999999999999999999999999999999999999999999999999865443 3457789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC-----C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE-----E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~-----~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
+|+||++.+++. |+.+|+.+.. . .. .+++.++++.+++.+. ....+.+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHHH
Confidence 999999988875 9999997531 1 11 2345566776665422 23445679999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998764 47899999999999987 999999999999876653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=333.59 Aligned_cols=189 Identities=25% Similarity=0.384 Sum_probs=160.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHhhc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNL 211 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl 211 (362)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|+ .|+.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 578999999999999999999999999999999999999999999999865432 2489999999887 5999998
Q ss_pred CcC-----CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 212 DPL-----EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 212 ~~~-----~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
.+. ....+ +++.++++.+++.+. ....+.+||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEA-----------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHH-----------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 12222 234556666666433 3334567899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 283 VDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||+.+++.+.+.|.+.. .++|||++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999998754 37899999999999877 999999999999999987665
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=366.92 Aligned_cols=210 Identities=24% Similarity=0.335 Sum_probs=176.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHH-HhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHD-LRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~r~~ 192 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++.
T Consensus 2 l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGGV--KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCCe--EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 7899999999753 599999999999999999999999999999999999987 7999999999987766544 3567
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCC-------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~-------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++|+||++.+++. |+.+|+.+... .. .+++.++++.+++.+.. ......+||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHHH
Confidence 9999999988764 99999865311 11 12345566666654321 122345689999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+++..|+++++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999998764 47899999999999987 999999999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=330.58 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=174.0
Q ss_pred cEEEEEEEEEeCCCC-------CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPHL-------PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~-------~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 187 (362)
.++++|+++.|+-.. ..+++||||+|++||+++|||+||||||||-++|+|+++|++|+|+++|+++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 488999999996432 25899999999999999999999999999999999999999999999999876543
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
.....+++.+.++.+|+.+. ...+.+.+||||||||++|||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHHH
Confidence 12234668889999987642 23344566899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSS 344 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~ 344 (362)
+.+|+++++|||+|+||...+.++.+++.++. .+.|.++||||++.+.+ ||||+||..|+|+|.|+.++++.++...
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence 99999999999999999999999999998764 47899999999999999 9999999999999999999999998888
Q ss_pred HHHHHHHH
Q 018040 345 FAQLVAEY 352 (362)
Q Consensus 345 ~~~~~~~~ 352 (362)
|.+.+-+.
T Consensus 205 YTk~Ll~a 212 (268)
T COG4608 205 YTKALLSA 212 (268)
T ss_pred HHHHHHHh
Confidence 98776544
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=368.23 Aligned_cols=220 Identities=25% Similarity=0.403 Sum_probs=178.3
Q ss_pred ccEEEEEEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC-CEe---CCCCC-
Q 018040 114 GEVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID-GID---ISSIG- 185 (362)
Q Consensus 114 ~~i~~~~l~~~y~~---~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~-g~~---i~~~~- 185 (362)
..++++|++++|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 35999999999953 22359999999999999999999999999999999999999999999996 643 33222
Q ss_pred --HHHHhcCcEEEcCCCCCCcc-cHHhhcCcCC--CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 186 --LHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE--EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 186 --~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
...++++++|+||++.+++. |+.+|+.+.. .. ..+++.++++.+++.+.- .+...+..+.+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHH
Confidence 12346679999999988864 9999996311 11 123455677777764210 011234455678999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||||+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998764 37899999999999987 99999999999999999
Q ss_pred hhHHhh
Q 018040 334 PTRLLE 339 (362)
Q Consensus 334 ~~~l~~ 339 (362)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=325.59 Aligned_cols=195 Identities=23% Similarity=0.250 Sum_probs=165.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 59999999999753 599999999999999999999999999999999999999999999999988642 3455799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|++|++.+++. |+.+|+.+.. ...++...++++.+++.+. .+....+||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999988875 9999985421 1123344566676665432 233456799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998753 57899999999999987 999999874
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=322.85 Aligned_cols=193 Identities=20% Similarity=0.240 Sum_probs=163.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 7899999999753 59999999999999999999999999999999999999999999999998864 33456788999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
+||++.+++ .|+++|+.+.. ......+.++++.+++.+..+ ....+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-----------YPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998875 69999987531 112345666777776644322 2335689999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEE
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+|||||||++||+.+++.+.+.|++.. +++|+|++||+.+.+..||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999998853 57899999999999988987543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=336.44 Aligned_cols=226 Identities=26% Similarity=0.415 Sum_probs=191.8
Q ss_pred ccEEEEEEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC
Q 018040 114 GEVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 184 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~---------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~ 184 (362)
.-++.+++.+.|+-+ ...++++|||++++||.+||||+||||||||-.+|++++++. |+|.++|+++...
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 459999999988532 124799999999999999999999999999999999999876 9999999999988
Q ss_pred CHHH---HhcCcEEEcCCCC--CCc-ccHHhhcCc----CC-C----CCHHHHHHHHHHcCCChHHHhccccchhhhccC
Q 018040 185 GLHD---LRSRLSIIPQDPT--MFE-GSVHNNLDP----LE-E----YADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249 (362)
Q Consensus 185 ~~~~---~r~~i~~v~Q~~~--l~~-~tv~enl~~----~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~ 249 (362)
+.++ +|+++-+|||||+ |-+ .||.+-|.- .. . ..++++.++++.+|++... .++.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----------r~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----------RNRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----------hhcC
Confidence 7654 6789999999996 333 477665531 11 1 1246678899999987532 2445
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 250 g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
+.++|||||||+|||||++.+|++++||||||+||...+.++.++++++. .+-+-++||||+..+.. ||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 66789999999999999999999999999999999999999999998753 47899999999999998 9999999999
Q ss_pred EEEEecChhHHhhcCCcHHHHHHH
Q 018040 327 LIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 327 ~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
+|+|.|+.++++++|...|.+-+-
T Consensus 504 kiVE~G~~~~if~~P~~~YT~~L~ 527 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYTRALL 527 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHHHHHH
Confidence 999999999999999888876543
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=317.23 Aligned_cols=220 Identities=25% Similarity=0.351 Sum_probs=192.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++||+++|+.+ .+++++|++|++|.+++|+|||||||||||.++++|+++++|+|+++|.++.+.+.+++.++++
T Consensus 1 MI~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 1 MITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred CeeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 37899999999865 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCc-ccHHhhcCcCC------C---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLE------E---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~------~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++-|+..+-. .||++-+.|++ + .+...+.++++-++|.+.-++.. .+||||||||..||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----------d~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----------DELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----------Hhcccchhhhhhhh
Confidence 9999987654 59999887643 1 12345678888888776555432 34799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
..++++.+.++||||.++||......+++.++++. -++||++|-||++++.. +|+|+-|++|+++..|+|+|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~- 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP- 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH-
Confidence 99999999999999999999999999999998864 37999999999999987 999999999999999999999875
Q ss_pred CcHHHHHH
Q 018040 342 SSSFAQLV 349 (362)
Q Consensus 342 ~~~~~~~~ 349 (362)
+...+++
T Consensus 227 -~~L~eiy 233 (252)
T COG4604 227 -EILSEIY 233 (252)
T ss_pred -HHHHHHh
Confidence 3455544
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=306.74 Aligned_cols=190 Identities=27% Similarity=0.396 Sum_probs=170.2
Q ss_pred CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHH
Q 018040 129 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 208 (362)
Q Consensus 129 ~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 208 (362)
..++|+++||++.+||+++|.||||||||||+|+++-+.+|++|.+++.|++++.++++.+|++|+|+.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcC-----CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 209 NNLDPL-----EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 209 enl~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
+|+-|. .+.+.....+.++++++.+ +.+..+..+||||||||++|+|-|.--|+||+||||||+|
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999753 2345556667788887754 3445566779999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhc--CCceEEEEecChhhhh-hcCeEEEEeCCEE
Q 018040 284 DTATDNLIQHTLGQHF--SDCTVITIAHRITSVI-DSDMVLLLSYGLI 328 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~Dri~vl~~G~i 328 (362)
|+.+.+.|.++|..+. ++..+++|||+.+... .+|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999998765 4689999999999855 5999999999986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=365.50 Aligned_cols=213 Identities=22% Similarity=0.305 Sum_probs=176.2
Q ss_pred cEEEEEEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEeCCCCCH-HHHhc
Q 018040 115 EVDIHGLQVRYAP-HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDGIDISSIGL-HDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~-~~~r~ 191 (362)
.++++|++++|+. +..++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+. ..+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999952 12359999999999999999999999999999999999998 599999999999865443 34567
Q ss_pred CcEEEcCCC---CCCc-ccHHhhcCcCC--C------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 192 RLSIIPQDP---TMFE-GSVHNNLDPLE--E------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 192 ~i~~v~Q~~---~l~~-~tv~enl~~~~--~------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
.++|+||++ .+++ .|+.+|+.+.. . .. .+++.++++.+++.. ...+....+|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT----------ASPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC----------CCcccccccCCH
Confidence 799999996 3554 59999996421 1 11 123455666665531 123445567999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++.. +++|||++||+++.+.. |||+++|++|+++..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 57899999999999987 99999999999999998
Q ss_pred hhHH
Q 018040 334 PTRL 337 (362)
Q Consensus 334 ~~~l 337 (362)
++++
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 8776
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=365.86 Aligned_cols=212 Identities=27% Similarity=0.431 Sum_probs=173.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEEC----------------
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAID---------------- 177 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~---------------- 177 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECCe--EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 4789999999653 5999999999999999999999999999999999997 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhcCcEEEcCC-CCCCc-ccHHhhcCcC---CCCC----HHHHHHHHHHcCC
Q 018040 178 -------GIDIS-------SIG---LHDLRSRLSIIPQD-PTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQL 231 (362)
Q Consensus 178 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~tv~enl~~~---~~~~----~~~~~~~l~~~~l 231 (362)
|.++. ..+ ...+|+.++|+||+ +.+|+ .|+++|+.+. .... .+++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 12356789999997 56776 4999998642 1111 2345667777776
Q ss_pred ChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEec
Q 018040 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAH 309 (362)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH 309 (362)
.+.. .+...+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||
T Consensus 159 ~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 5433 33456689999999999999999999999999999999999999999998863 3789999999
Q ss_pred Chhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 310 RITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 310 ~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+++.+.. ||||++|++|+++..|+++++...
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999987 999999999999999999887653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=304.21 Aligned_cols=212 Identities=24% Similarity=0.346 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC--CCCC----HHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI--SSIG----LHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i--~~~~----~~~ 188 (362)
+|+++++++.|+.. .+|.||+|+.+.||.+.++||||+|||||++.|.-+.-|.+|+..|-|... +..+ ..+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 48899999999876 489999999999999999999999999999999999999999999977643 3322 346
Q ss_pred HhcCcEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|+++|+|||...+.+- ||.||+--. ...+ ..+..+.+++..+.++.++.| ..|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 89999999999999875 999998421 1122 334556677777776666655 456999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||+|||||+++|++|++||||++|||+-...+.++++++. .|.|-++|||..+.++. |.||+.|++|+|+|.|+..-.
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 9999999999999999999999999999999999999876 47999999999999998 999999999999999998765
Q ss_pred hh
Q 018040 338 LE 339 (362)
Q Consensus 338 ~~ 339 (362)
-+
T Consensus 229 t~ 230 (242)
T COG4161 229 TE 230 (242)
T ss_pred cC
Confidence 43
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=321.04 Aligned_cols=194 Identities=26% Similarity=0.316 Sum_probs=165.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . .+++.++
T Consensus 2 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 37899999999753 59999999999999999999999999999999999999999999999998642 1 2677899
Q ss_pred EEcCCCCCC-cccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 195 IIPQDPTMF-EGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 195 ~v~Q~~~l~-~~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|++|++.++ ..|+++|+.+.. ...++++.++++.+++.+..+ ....+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 469999986422 223455777888888754322 23356899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
|+++||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 357999999999999988 99988854
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-44 Score=363.42 Aligned_cols=208 Identities=19% Similarity=0.300 Sum_probs=172.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i 193 (362)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++++
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999999763 28999999999999999999999999999999999999999999999998865443 3456789
Q ss_pred EEEcCCC---CCCc-ccHHhhcCcCCC------------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 194 SIIPQDP---TMFE-GSVHNNLDPLEE------------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 194 ~~v~Q~~---~l~~-~tv~enl~~~~~------------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+|+||++ .+++ .|+++|+.+... .. .+++.++++.+++.. ...+..+.+|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 410 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC----------HSVNQNITEL 410 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC----------CCccCccccC
Confidence 9999984 5665 499999864311 01 122445566655530 1234455678
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.
T Consensus 411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 57899999999999887 999999999999988
Q ss_pred cChhH
Q 018040 332 DSPTR 336 (362)
Q Consensus 332 g~~~~ 336 (362)
++..+
T Consensus 491 ~~~~~ 495 (510)
T PRK09700 491 LTNRD 495 (510)
T ss_pred ecCcc
Confidence 87633
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=397.76 Aligned_cols=215 Identities=25% Similarity=0.328 Sum_probs=187.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|+++.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|+.+|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996433469999999999999999999999999999999999999999999999999864 4556788899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+++. |++||+.+.. ... ++++.+.++.+++.+.. +....+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 99999998865 9999997531 111 23456677777765433 34456689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|+.+|+++||||||+|||+.+++.+.+.|++..+++|||++||+++.+.. ||||++|++|+++..|+++++.++.
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999988778999999999999987 9999999999999999999987653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=319.42 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=160.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987654 345678999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
++|++.+++ .|+.+|+.+.. ......+.++++.+++.+..+ ....+||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998876 59999986421 112335677788887765432 334568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhhcCeEEE
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+++||||||++||+.+++.+.+.+.+. .++.|+|++||+...+. |++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 999999999999999999999999875 45789999999984432 466654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=323.07 Aligned_cols=198 Identities=22% Similarity=0.316 Sum_probs=161.9
Q ss_pred EEEEEEEEEeCCC-----CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--CE--eCCCCCH
Q 018040 116 VDIHGLQVRYAPH-----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID--GI--DISSIGL 186 (362)
Q Consensus 116 i~~~~l~~~y~~~-----~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~--g~--~i~~~~~ 186 (362)
++++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 2369999999999999999999999999999999999999999999998 42 5544443
Q ss_pred HH---H-hcCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 187 HD---L-RSRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 187 ~~---~-r~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
.. + ++.++|+||++.+++. |+++|+.+. .... .+++.++++.+++.+.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 32 2 4579999999988864 999998541 1111 23445666766664322 123466799
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEE
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
||||||++|||||+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. |||++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 47899999999999876 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=347.98 Aligned_cols=207 Identities=25% Similarity=0.357 Sum_probs=177.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
-++++|++++|++- ++|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|.+||++....++.+- ..-|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 58999999999875 59999999999999999999999999999999999999999999999999987776654 4569
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC-------CCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE-------YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~-------~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+.|+|+..|++. ||.||+.+... .+. ++..++++.+++.. ..++. ..+||.||||.|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~-------~~~~~----v~~LsiaqrQ~V 154 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI-------DPDTL----VGDLSIAQRQMV 154 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC-------Chhhh----hhhCCHHHHHHH
Confidence 999999999975 99999964332 122 33344555555531 13333 456999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
+||||+..+++++|||||||+|+....+.+++.+++++ +|.++|+|||+++++.. ||||.||+||+.+...+.
T Consensus 155 eIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 155 EIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999875 68999999999999998 999999999999988773
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=327.25 Aligned_cols=203 Identities=20% Similarity=0.274 Sum_probs=167.0
Q ss_pred cEEEEEEEEEeCC------------------CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 018040 115 EVDIHGLQVRYAP------------------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176 (362)
Q Consensus 115 ~i~~~~l~~~y~~------------------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 176 (362)
.++++||++.|.. ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4778888777643 1235899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHhhcCcC---CCCCHHHH----HHHHHHcCCChHHHhccccchhhhcc
Q 018040 177 DGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPL---EEYADEEI----WEALDKCQLGNEVRKNEGKLESRVTE 248 (362)
Q Consensus 177 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~---~~~~~~~~----~~~l~~~~l~~~~~~~~~~l~~~~~~ 248 (362)
+|. +++++|++.+++ .|+.+|+.+. .....++. ..+++.+++. ..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcC
Confidence 984 356777776664 4999998542 12222222 2344444443 33445
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
.+.+|||||+||++||||++.+|++|||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 567899999999999999999999999999999999999999999998764 57899999999999887 9999999999
Q ss_pred EEEEecChhHHhhcC
Q 018040 327 LIEEFDSPTRLLENK 341 (362)
Q Consensus 327 ~i~~~g~~~~l~~~~ 341 (362)
++++.|+++++....
T Consensus 220 ~i~~~g~~~~~~~~~ 234 (264)
T PRK13546 220 KLKDYGELDDVLPKY 234 (264)
T ss_pred EEEEeCCHHHHHHHh
Confidence 999999999988763
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=394.06 Aligned_cols=216 Identities=16% Similarity=0.201 Sum_probs=185.3
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
...|+++|++++|+++...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.. ...+.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997633469999999999999999999999999999999999999999999999999864 34556788
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|||+||++.+++ .|++||+.+.. ... ++.+.++++.+++.+..+ +...+||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 999999998886 49999996421 122 223445677777654433 34456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|+++||||||+|||+.+++.+.+.|++.. +|+|||++||++++++. ||||++|++|+++..|+++++.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999998863 57999999999999988 999999999999999999999664
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=358.81 Aligned_cols=212 Identities=21% Similarity=0.277 Sum_probs=174.0
Q ss_pred cEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCCCCH-HHHhc
Q 018040 115 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISSIGL-HDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~~~~-~~~r~ 191 (362)
.++++|++++|+++ ...+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999421 23589999999999999999999999999999999999995 89999999999865433 45677
Q ss_pred CcEEEcCCC---CCCc-ccHHhhcCcCC-----C---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 192 RLSIIPQDP---TMFE-GSVHNNLDPLE-----E---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 192 ~i~~v~Q~~---~l~~-~tv~enl~~~~-----~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
+++|+||++ .+++ .|+++|+.+.. . .. .+++.++++.+++.+ .........|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT----------ASPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC----------CCccCccccCCH
Confidence 899999996 4665 59999986521 0 11 123455666665521 123344567999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||||++|||||+.+|++|||||||++||+.+++.+.+.+++.. ++.|||++|||++.+.. |||+++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998764 57899999999999987 99999999999998776
Q ss_pred hhH
Q 018040 334 PTR 336 (362)
Q Consensus 334 ~~~ 336 (362)
.++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=307.47 Aligned_cols=204 Identities=24% Similarity=0.288 Sum_probs=174.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.+.+++++.+|++....+|+|+|++|.+||.+.++||||||||||+++++|+.+|..|+|.+||+.|..... .-|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 467889999998876669999999999999999999999999999999999999999999999999976543 359
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+|||++.|++. ++.+|+.|.- ... .+...+.+..+|+.+.-+ +...+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHHH
Confidence 99999999986 9999998742 122 233456677777765433 3345689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecCh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSP 334 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~ 334 (362)
|+-+|++|+||||+++||.-+++.+++.+.+.. .++.+++|||+++++.. ++|++||+- |+|++.-++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999998754 47999999999999887 999999995 699886554
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=322.04 Aligned_cols=186 Identities=24% Similarity=0.359 Sum_probs=157.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC---CcccHHhhcCcC
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM---FEGSVHNNLDPL 214 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---~~~tv~enl~~~ 214 (362)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.+ ++.|+.+|+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 346789999999876 346899998542
Q ss_pred C---------C--CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 215 E---------E--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 215 ~---------~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
. . ...+++.++++.+++.+.. .....+||||||||++|||||+++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 0 1123466677777765433 3344568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 284 DTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+.+++.+.+.+++.. +++|+|++||+++.+.. ||+++++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998864 47899999999999887 9999999 8999999999998654
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=315.08 Aligned_cols=173 Identities=27% Similarity=0.394 Sum_probs=144.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcCcEEEcCCC--CCCccc
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRLSIIPQDP--TMFEGS 206 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~--~l~~~t 206 (362)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|+||++ .+|..|
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 59999999999999999999999999999999999999999999999998852 22335677899999998 467779
Q ss_pred HHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 207 VHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 207 v~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
+++|+.+.. ... .+++.++++.+++.+.. ...+.+||||||||++|||||+++|+++|||||
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR-----------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999996521 122 23455667777665433 334567899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhh
Q 018040 280 TASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 314 (362)
|++||+.+++.+.+.|++.. +++|||++||+++.+
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 99999999999999998864 478999999998753
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=317.89 Aligned_cols=209 Identities=20% Similarity=0.400 Sum_probs=181.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.+++++|+++|++. .|++|+||++++|++.|++|||||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 48999999999875 59999999999999999999999999999999999999999999999998753 4567899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+|.+-.|++. ||.|.+.++. .... .++..++++.++.. ....+..+||.|++|++.+-.|
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~-----------~~~~kIk~LSKGnqQKIQfisa 144 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG-----------KKTKKIKELSKGNQQKIQFISA 144 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccc-----------cccchHHHhhhhhhHHHHHHHH
Confidence 99999999965 9999987643 2333 33445566655432 2234456689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
++++|+++|||||+|||||.+.+.+.+.+.+.+ +|.|||++||+|+.++. ||+++.|++|+.|-.|+.+++...
T Consensus 145 viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999999998865 68999999999999998 999999999999999999998763
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=319.73 Aligned_cols=192 Identities=24% Similarity=0.305 Sum_probs=156.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
+.+++++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 23 l~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~----- 90 (224)
T cd03220 23 LGILGRKGEVGEF--WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G----- 90 (224)
T ss_pred hhhhhhhhhcCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c-----
Confidence 7789999999764 699999999999999999999999999999999999999999999999876311 1
Q ss_pred EcCCCCC-CcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTM-FEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l-~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+...+ ...|+++|+.+.. .... +++.++++.+++.+. ......+||||||||++||||+
T Consensus 91 --~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral 157 (224)
T cd03220 91 --LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-----------IDLPVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred --ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 11122 2459999986421 1111 234455555555433 2334467899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+++|+++||||||++||+.+++.+.+.+.+.. +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998764 46899999999999886 9999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=355.38 Aligned_cols=206 Identities=21% Similarity=0.337 Sum_probs=172.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 193 (362)
.++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 588999984 279999999999999999999999999999999999999999999999998765543 356789
Q ss_pred EEEcCCC---CCCc-ccHHhhcCcCC-----C----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 194 SIIPQDP---TMFE-GSVHNNLDPLE-----E----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 194 ~~v~Q~~---~l~~-~tv~enl~~~~-----~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
+|+||++ .++. .|+.+|+.+.. . .. .+++.++++.+++. +...++.+.+||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG 399 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQAIGLLSGG 399 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCchhhCCHH
Confidence 9999997 3554 59999986421 0 11 12345566666552 11234456679999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|+++..|++
T Consensus 400 ekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~ 479 (501)
T PRK10762 400 NQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTR 479 (501)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999998864 57899999999999987 999999999999999988
Q ss_pred hHH
Q 018040 335 TRL 337 (362)
Q Consensus 335 ~~l 337 (362)
+++
T Consensus 480 ~~~ 482 (501)
T PRK10762 480 EQA 482 (501)
T ss_pred ccC
Confidence 775
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=319.95 Aligned_cols=196 Identities=22% Similarity=0.315 Sum_probs=173.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHhcCcEEEcCCCCCCcc-cHHh
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHDLRSRLSIIPQDPTMFEG-SVHN 209 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~v~Q~~~l~~~-tv~e 209 (362)
+++|+.+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||.-+.+. ....-+++|||||||..||+. ||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 58899988789999999999999999999999999999999999877543 223347889999999999975 9999
Q ss_pred hcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 018040 210 NLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 210 nl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~ 288 (362)
|+.+..... ..+..++....|+.+.+++.|.. |||||||||||+|||+..|++|+||||.|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~-----------LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT-----------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCc-----------cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999876544 55777888888887777766654 699999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 289 NLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 289 ~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
++++-.+..+.+ +.-|+.|||.++++.+ ||+|++|++||+.++|..+++++++
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999988754 4789999999999998 9999999999999999999998764
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=360.27 Aligned_cols=213 Identities=25% Similarity=0.346 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH---
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL--- 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~--- 189 (362)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+..++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999642 2359999999999999999999999999999999999999999999999999988776543
Q ss_pred -hcCcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 -RSRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 -r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++.++|+||++.+|+. |+.||+.+.. ... +++..+.++.+++.+ .++..+.+||+||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-----------~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-----------RVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhcCCcccCCHHHHHH
Confidence 5689999999999864 9999996421 111 223455566665543 3444556789999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++|||||+++|+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+..|||+++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998864 579999999999988779999999999999999998875
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=362.22 Aligned_cols=198 Identities=24% Similarity=0.287 Sum_probs=168.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-cc
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GS 206 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~t 206 (362)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. ...+++++||+|++.+++ .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 35999999999999999999999999999999999999885 899999999874 234567999999999986 49
Q ss_pred HHhhcCcCC------CCCH----HHHHHHHHHcCCChHHHhccccchhhhcc-CCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 207 VHNNLDPLE------EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTE-NGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 207 v~enl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
++||+.+.. ..++ +++.+.++.+++.+. .++.+++ ....||||||||++|||||+.+|++|+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 999996521 1222 234566777776432 3555543 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 276 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|||||+|||+.++..+.+.|++.. +++|||+++|+++. +.. +|+|++|++|+++..|+++++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 999999999999999999998865 58999999999984 555 9999999999999999998875
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=353.71 Aligned_cols=199 Identities=24% Similarity=0.325 Sum_probs=165.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++|
T Consensus 2 l~i~~ls~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGAK--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCCc--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 7899999999753 5999999999999999999999999999999999999999999999872 35999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC---------------------------------------CCHHHHHHHHHHcCCChHH
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE---------------------------------------YADEEIWEALDKCQLGNEV 235 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~---------------------------------------~~~~~~~~~l~~~~l~~~~ 235 (362)
+||++.++.. |+++|+.+... ....++.++++.+++.+..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9999988764 99999854210 0012233444444443211
Q ss_pred HhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 236 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 236 ~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
......+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+|||+++.+.
T Consensus 149 ----------~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 149 ----------HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLN 216 (530)
T ss_pred ----------hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHH
Confidence 1234567999999999999999999999999999999999999999999974 4789999999999998
Q ss_pred h-cCeEEEEeCCEE-EEecChhHHhh
Q 018040 316 D-SDMVLLLSYGLI-EEFDSPTRLLE 339 (362)
Q Consensus 316 ~-~Dri~vl~~G~i-~~~g~~~~l~~ 339 (362)
. ||+|++|++|++ +..|++++.++
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 7 999999999999 47899887764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=353.26 Aligned_cols=208 Identities=21% Similarity=0.300 Sum_probs=172.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i 193 (362)
.++++|++++ .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. ...++.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4889999742 38999999999999999999999999999999999999999999999998865433 3456789
Q ss_pred EEEcCCCC---CCc-ccHHhhcCcCCC---------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 194 SIIPQDPT---MFE-GSVHNNLDPLEE---------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 194 ~~v~Q~~~---l~~-~tv~enl~~~~~---------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
+|+||++. +|+ .|+.+|+.+... .. .+++.++++.+++. .........+||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG 400 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK----------TPSREQLIMNLSGG 400 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc----------cCCccCccccCCHH
Confidence 99999973 564 699999864211 01 12344556655542 11234456679999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
|||||+|||||+.+|++|||||||++||+.+++.+.+.|+++. .+.|||++|||++.+.. |||+++|++|++++.|++
T Consensus 401 q~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~ 480 (501)
T PRK11288 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480 (501)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999998764 47899999999999987 999999999999999988
Q ss_pred hHHh
Q 018040 335 TRLL 338 (362)
Q Consensus 335 ~~l~ 338 (362)
++..
T Consensus 481 ~~~~ 484 (501)
T PRK11288 481 EQAT 484 (501)
T ss_pred ccCC
Confidence 7653
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=342.90 Aligned_cols=202 Identities=21% Similarity=0.288 Sum_probs=167.7
Q ss_pred cEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.++++|++++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 699999999997642 3599999999999999999999999999999999999999999999999752
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CCCHH----HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EYADE----EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
++.+.+.+++ .|+++|+.+.. ....+ .+.++++.+++.+.. ...+.+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~l-----------d~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-----------YQPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCCcccCCHHHHHHHHHHH
Confidence 1222333443 49999986421 22222 234566666665443 3345678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.++..+.+.|.+.. +++|||++||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999998764 47899999999999987 999999999999999999998765
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=310.11 Aligned_cols=188 Identities=24% Similarity=0.374 Sum_probs=156.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. .++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 2 l~~~~l~~~~~~~--~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQK--NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECCc--EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 7899999999652 344 599999999999999999999999999999999999999999999875432 346999
Q ss_pred EcCCCCC-CcccHHhhcCcCCC--CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 196 IPQDPTM-FEGSVHNNLDPLEE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 196 v~Q~~~l-~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++|++.+ +..|+++|+.+... ...+++.++++.+++.+. ..+.+.+||||||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 45799999965321 124456666777766433 334566799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhhcCeEE
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~Dri~ 321 (362)
++||||||++||+.+++.+.+.+++. .+++|+|++||+++.+..||-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999754 45799999999999999988763
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=352.10 Aligned_cols=202 Identities=17% Similarity=0.289 Sum_probs=172.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 369999999999753 5999999999999999999999999999999999999999999999872 469
Q ss_pred EEEcCCCC--CCc-ccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 SIIPQDPT--MFE-GSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~~v~Q~~~--l~~-~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
||+||++. +++ .|+++|+.... ...++++.++++.+++.. ......+.+||||||||++||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQ----------DDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCCh----------hHhcCcccccCHHHHHHHHHHHHHh
Confidence 99999974 443 59999986432 223456677788877631 1233455678999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHhhc
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLLEN 340 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l~~~ 340 (362)
.+|++|||||||++||+.+.+.+.+.+++. +.|||+|||+++.+.. ||||++|++|+++ ..|++.++++.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999876 3599999999999987 9999999999998 78888887654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=327.05 Aligned_cols=231 Identities=22% Similarity=0.311 Sum_probs=194.9
Q ss_pred cEEEEEEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~--~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 187 (362)
-++++|+++.|. +....++++|||+|++||.+||||+||||||-..+.++|+++- .+|+|.++|.++-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 489999999885 3334689999999999999999999999999999999999974 379999999999888877
Q ss_pred HHhc----CcEEEcCCCCC--Ccc-cHHh----hcCcCC----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 188 DLRS----RLSIIPQDPTM--FEG-SVHN----NLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 188 ~~r~----~i~~v~Q~~~l--~~~-tv~e----nl~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
++|+ +|++|||+|.. -+- |+.. -+.... ....+++.+.|+.+|+.+.- ..+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--------~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--------KRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh--------hhhhhCCcc
Confidence 7653 69999999953 232 5443 333322 23456778889999986532 234556778
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
|||||||||.||.||+.+|++||.||||.+||...+.+|.++|+++. .|..+++||||+..+.. ||||.||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999999864 47899999999999998 9999999999999
Q ss_pred EecChhHHhhcCCcHHHHHHHHHh
Q 018040 330 EFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 330 ~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|.|+.++++..+...|.+.+....
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~ae 261 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAE 261 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcC
Confidence 999999999999889988776544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=335.15 Aligned_cols=206 Identities=22% Similarity=0.349 Sum_probs=177.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 193 (362)
.+++++++++|++- .++++|||+|++||+.||+|+||||||||+++|.|+|+|++|+|++||+++.-.++. ..|..|
T Consensus 4 ~l~~~~itK~f~~~--~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPGV--VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCCE--EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 48999999999843 589999999999999999999999999999999999999999999999998766655 467789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+|+|++.|++. ||.||+....+ .+ .+++.+..++.|+. -...+....||-||||||.
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~-----------vdp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP-----------VDPDAKVADLSVGEQQRVE 150 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCC-----------CCccceeecCCcchhHHHH
Confidence 999999999976 99999965432 12 23444555555543 2334445669999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|-+||+++|++||||||||-|-|...+.+++.++++. +|+|||+|||+++++.. |||+-||..||++..-.
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999865 68999999999999998 99999999999876554
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=332.13 Aligned_cols=185 Identities=26% Similarity=0.400 Sum_probs=157.3
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhcCcCC---CCC----H
Q 018040 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----D 219 (362)
Q Consensus 148 ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~ 219 (362)
|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++|+||++.+|+. |+++|+.+.. ... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876553 36789999999999875 9999997531 112 2
Q ss_pred HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~ 299 (362)
+++.++++.+++.+..+ ..+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 34566777777654433 3456689999999999999999999999999999999999999999998764
Q ss_pred --CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 300 --SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 300 --~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
.++|+|+|||+++.+.. ||||++|++|++++.|+++++++.+...+
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 37899999999999887 99999999999999999999988754444
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=352.77 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=172.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 599999983 1699999999999999999999999999999999999999999999999987665543 45679
Q ss_pred EEEcCCC---CCCc-ccHHhhcCcC-----CC--CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 194 SIIPQDP---TMFE-GSVHNNLDPL-----EE--YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 194 ~~v~Q~~---~l~~-~tv~enl~~~-----~~--~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|+||++ .+|+ .|+.+|+... .. .. .+.+.++++.+++.. ...+....+|||||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTLSGGNQQ 410 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccCCcHHHH
Confidence 9999985 3665 4899997421 00 01 123445566655430 2334556679999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++. ++.|||+|||+++.+.. |||+++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998764 47899999999999987 999999999999999998876
Q ss_pred hh
Q 018040 338 LE 339 (362)
Q Consensus 338 ~~ 339 (362)
..
T Consensus 491 ~~ 492 (510)
T PRK15439 491 NV 492 (510)
T ss_pred CH
Confidence 53
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=351.05 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=165.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +.++|
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 69999999999722 3599999999999999999999999999999999999999999999975 13699
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-C----------------CH----------HHHHHHHHHcCCCh---HHHhcc--cc
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-Y----------------AD----------EEIWEALDKCQLGN---EVRKNE--GK 241 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-~----------------~~----------~~~~~~l~~~~l~~---~~~~~~--~~ 241 (362)
|+||++.+++. |+.+|+.+... . .. .++.+.++.++.++ .+.... -+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 99999998865 99999864210 0 00 00111111111111 011000 11
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
++ .......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|++.. .|||+|||+++.+.. ||+|
T Consensus 154 l~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 154 CP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred CC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeE
Confidence 21 1345667899999999999999999999999999999999999999999998763 599999999999988 9999
Q ss_pred EEEeCCEEE-EecChhHHhh
Q 018040 321 LLLSYGLIE-EFDSPTRLLE 339 (362)
Q Consensus 321 ~vl~~G~i~-~~g~~~~l~~ 339 (362)
++|++|+++ ..|++++..+
T Consensus 231 ~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEEeCCEEEEecCCHHHHHH
Confidence 999999986 6788887654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=351.88 Aligned_cols=210 Identities=23% Similarity=0.296 Sum_probs=169.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..||
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999732 3599999999999999999999999999999999999999999999875 23699
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC------------------C-C--------HHHHHHHHHHcCCChHHH---hcc--cc
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE------------------Y-A--------DEEIWEALDKCQLGNEVR---KNE--GK 241 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~------------------~-~--------~~~~~~~l~~~~l~~~~~---~~~--~~ 241 (362)
|+||++.+++. |++||+.+... . . ..++.++++.++.++... ... .+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99999988864 99999864210 0 0 112344455555432111 110 12
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
++ ..+....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||+|
T Consensus 152 l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 152 CP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred CC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeE
Confidence 22 135567889999999999999999999999999999999999999999999876 3599999999999988 9999
Q ss_pred EEEeCCEEE-EecChhHHhh
Q 018040 321 LLLSYGLIE-EFDSPTRLLE 339 (362)
Q Consensus 321 ~vl~~G~i~-~~g~~~~l~~ 339 (362)
++|++|+++ ..|+++++.+
T Consensus 229 ~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 999999976 6788887654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=379.90 Aligned_cols=210 Identities=20% Similarity=0.267 Sum_probs=179.1
Q ss_pred cEEEEEEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~--~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 189 (362)
.++++||+++|+ ++.+.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 489999999995 223469999999999999999999999999999999999997 78899999999874 246
Q ss_pred hcCcEEEcCCCCCC-cccHHhhcCcCC------CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 190 RSRLSIIPQDPTMF-EGSVHNNLDPLE------EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 190 r~~i~~v~Q~~~l~-~~tv~enl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
|+.+|||+|++.++ ..||+||+.+.. ..++ +.+.++++.+++.+. .++.+++.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHh
Confidence 78899999997655 469999997521 1222 345677888877543 56777777779999999
Q ss_pred HHHHHHHHhcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhh--hhcCeEEEEeCC-EEEEecC
Q 018040 259 QLVCLARVLLKKSK-VLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSV--IDSDMVLLLSYG-LIEEFDS 333 (362)
Q Consensus 259 QRv~iAral~~~p~-illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~--~~~Dri~vl~~G-~i~~~g~ 333 (362)
||++|||||+.+|+ +|+|||||||||+.++..+.+.|++. .+|+|||+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999986 4679999999999874 349999999997 9999998
Q ss_pred hh
Q 018040 334 PT 335 (362)
Q Consensus 334 ~~ 335 (362)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=289.68 Aligned_cols=143 Identities=27% Similarity=0.468 Sum_probs=134.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|. +.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999984 36999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+|| ||+||+||++|||||+++|+++|
T Consensus 68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 69999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 276 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
|||||++||+.++..+.+.+++. ++|+|++||+++.+.. ||++++|++||
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999876 4799999999999977 99999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=343.20 Aligned_cols=209 Identities=20% Similarity=0.338 Sum_probs=169.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 192 (362)
..|+++|++++| +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 249 ~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 249 VILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred cEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 359999999974 2489999999999999999999999999999999999999999999999998766544 34677
Q ss_pred cEEEcCCCC---CCc-ccHHhh-----cCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 193 LSIIPQDPT---MFE-GSVHNN-----LDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 193 i~~v~Q~~~---l~~-~tv~en-----l~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
++|+||++. +|+ .|+.+| +.... . .. .+++.+.++.+++.+ ...+..+.+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 394 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT----------PGHRTQIGSLSG 394 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC----------CCcccccccCCc
Confidence 999999853 555 366665 32110 0 11 122344455544421 123555678999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||||++||||++.+|+||||||||+|||+.+++.+.+.++++. ++.|||++||+++.+.. |||+++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998754 57999999999999987 99999999999998876
Q ss_pred hhH
Q 018040 334 PTR 336 (362)
Q Consensus 334 ~~~ 336 (362)
.++
T Consensus 475 ~~~ 477 (491)
T PRK10982 475 TKT 477 (491)
T ss_pred ccc
Confidence 643
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=313.98 Aligned_cols=192 Identities=22% Similarity=0.278 Sum_probs=154.4
Q ss_pred EEeCCCCCceeeeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 123 VRYAPHLPLVLRGLTCTFL-----GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~-----~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
|+|++.. ..+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+|
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 3565443 36777888876 79999999999999999999999999999999999984 589999
Q ss_pred CCCCC-CcccHHhhcCcCCC-C--CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 198 QDPTM-FEGSVHNNLDPLEE-Y--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 198 Q~~~l-~~~tv~enl~~~~~-~--~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|++.. +..|+++|+..... . ......++++.+++.+ .....+.+||||||||++|||||+.+|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ-----------ILDREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99875 56799999854211 1 1223445666665543 33445567899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE--EecChhHHh
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE--EFDSPTRLL 338 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~--~~g~~~~l~ 338 (362)
+||||||++||+.++..+.+.|++.. .++|||+|||+++.+.. ||+|++|+++..+ ..++|.++.
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999999999999999998864 37899999999999987 9999999775433 456666654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=344.42 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=166.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCC-CCHHHHhc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISS-IGLHDLRS 191 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~-~~~~~~r~ 191 (362)
..++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|.++.. ......++
T Consensus 259 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 259 PRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred ceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 359999999999753 599999999999999999999999999999999999876 69999999987632 22334567
Q ss_pred CcEEEcCCCCCCc---ccHHhhcCcC--C------CCC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 192 RLSIIPQDPTMFE---GSVHNNLDPL--E------EYA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 192 ~i~~v~Q~~~l~~---~tv~enl~~~--~------~~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
+++|++|++.++. .++.+++.+. . ... .+++.++++.+++.+. ....++.+|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHH
Confidence 8999999986542 3666665321 0 111 2345667777766431 2233456689999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CC-ceEEEEecChhhhhh--cCeEEEEeCCEEEEec
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SD-CTVITIAHRITSVID--SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g 332 (362)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. ++ .|||++||+++.+.. ||++++|++|++++.-
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999999999998864 34 479999999999974 8999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=348.81 Aligned_cols=200 Identities=21% Similarity=0.305 Sum_probs=171.5
Q ss_pred CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc
Q 018040 129 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205 (362)
Q Consensus 129 ~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 205 (362)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+++.+|||+|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 356999999999999999999999999999999999999885 799999999874 34678889999999998865
Q ss_pred -cHHhhcCcCC------CCC----HHHHHHHHHHcCCChHHHhccccchhhhccC--CCCCChhHHHHHHHHHHhcCCCC
Q 018040 206 -SVHNNLDPLE------EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTEN--GENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 206 -tv~enl~~~~------~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~--g~~LSgGqrQRv~iAral~~~p~ 272 (362)
||+||+.+.. ..+ .+++.+.++.+++.+ ..++.+++. +..||||||||++|||||+.+|+
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-------CANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-------cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 9999996421 112 234566777776643 357788873 47899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChh-hhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRIT-SVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+++|||||+|||+.+...+.+.+++.. +++|+|+++|+++ .+.. +|++++|++|+++..|+++++.
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999999999999999865 4799999999996 5554 9999999999999999998874
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=302.85 Aligned_cols=183 Identities=20% Similarity=0.224 Sum_probs=148.5
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-ECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHh
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHN 209 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~e 209 (362)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.+++.+|+. |+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777532 12345667765 9999
Q ss_pred hcCcCC---CCCHHHHHHHH-HHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 210 NLDPLE---EYADEEIWEAL-DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 210 nl~~~~---~~~~~~~~~~l-~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
|+.+.. ....++..+.+ +..++ +...+.....||+|||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQL-----------EQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCh-----------hHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 996531 22333332222 22222 2223344566899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 286 ATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 286 ~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
.+++.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++.++.++..
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 9999999988654456799999999999976 9999999999999999988874
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=314.87 Aligned_cols=205 Identities=21% Similarity=0.288 Sum_probs=160.7
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEeCCCCCHH
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-----------IDGIDISSIGLH 187 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~ 187 (362)
.+|+++|+++. .+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++......
T Consensus 4 ~~~~~~y~~~~-~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNS-FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcc-hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 46889997542 5899999 4999999999999999999999999999999999996 788887654322
Q ss_pred HHhc--CcEEEcCCCCCCcccHHhhcCcC-CC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 188 DLRS--RLSIIPQDPTMFEGSVHNNLDPL-EE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 188 ~~r~--~i~~v~Q~~~l~~~tv~enl~~~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
..+. .++|++|++.+++.++.+|+... .. ...+...++++.+++.+. ....+.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 2222 47899998877665544444321 11 123456677777766433 334556789999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE---ecChhHH
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE---FDSPTRL 337 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~---~g~~~~l 337 (362)
|||++.+|+++||||||++||+.+++.+.+.+++.. +++|||++||+++.+.. ||+|++|+ |++.+ .|.|...
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~~~~~~~~~ 228 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYGVVTLPKSV 228 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcceeeecCccH
Confidence 999999999999999999999999999999998865 47999999999999987 99999995 55654 3445443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=287.46 Aligned_cols=228 Identities=25% Similarity=0.345 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCC-------CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH
Q 018040 116 VDIHGLQVRYAP-------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~-------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~ 188 (362)
++++|+++.|.. ....+++.|||++++|+.+||+|.||||||||.|+|+|+++|++|+|++||+++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 677788776632 2234789999999999999999999999999999999999999999999999986555545
Q ss_pred HhcCcEEEcCCCCC-Cc-----ccHHh-----hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 189 LRSRLSIIPQDPTM-FE-----GSVHN-----NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l-~~-----~tv~e-----nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
..++|-++||||.- |+ |++.| |-.+......+++.+.++.+|+-.. ..+-++..||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd----------han~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD----------HANYYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcc----------ccccchhhcCchh
Confidence 55779999999953 22 12211 1111112234667788888887432 2233456689999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
|||||+||||+.+|+|+|.||+.++||...+.++.+++.++ +.|..-|.|+.++..++. +|.|+||++|+++|.|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999999999999999999988764 357899999999999999 999999999999999999
Q ss_pred hHHhhcCCcHH-HHHHHHHh
Q 018040 335 TRLLENKSSSF-AQLVAEYT 353 (362)
Q Consensus 335 ~~l~~~~~~~~-~~~~~~~~ 353 (362)
.+++..|.... .++++...
T Consensus 235 ~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 235 ADVLASPLHELTKRLIESHF 254 (267)
T ss_pred hhhhcCCccHHHHHHHHHHh
Confidence 99999876554 44444433
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=289.75 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=189.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC-EeCCCCCHHHH-hcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG-IDISSIGLHDL-RSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g-~~i~~~~~~~~-r~~ 192 (362)
.++++|++++|++- .+|+++||++.+||.-+|+|||||||||++.+|.|-.+|+.|+|+++| .+++.++...+ |..
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 58999999999876 499999999999999999999999999999999999999999999999 89999987766 456
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcC------------CC---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPL------------EE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~------------~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
||-=||.|..|.. ||+||+... .+ ....++.+.|...+|.+..+... ..||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----------~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----------ALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----------hhhccc
Confidence 9999999999976 999998531 11 12346788888888876655433 347999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
|||++.|+..++++|++|+||||++|+-.+.....-++++.+..+++|++|.||+.++.. ||+|-||+.|.|...|+.+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999988888889999998888999999999999998 9999999999999999999
Q ss_pred HHhhcC
Q 018040 336 RLLENK 341 (362)
Q Consensus 336 ~l~~~~ 341 (362)
++-+++
T Consensus 232 ~v~~dp 237 (249)
T COG4674 232 EVQNDP 237 (249)
T ss_pred HhhcCc
Confidence 997664
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=337.73 Aligned_cols=201 Identities=20% Similarity=0.258 Sum_probs=165.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 321 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 321 KVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred eEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 469999999999753 599999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEcCCCC-CCc-ccHHhhcCcCCC---CC--HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 194 SIIPQDPT-MFE-GSVHNNLDPLEE---YA--DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 194 ~~v~Q~~~-l~~-~tv~enl~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||+||++. +++ .|+.+|+.+... .. ..+..++++.+++... .....+.+|||||||||+||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999973 554 499999865321 11 2234456666665321 2234456789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeC-CEEE-EecChhHHhh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-GLIE-EFDSPTRLLE 339 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~-G~i~-~~g~~~~l~~ 339 (362)
|+.+|++|||||||++||+.+.+.+.+.|++.. .|||+|||+++.+.. ||+|++|++ |+++ ..|+.++..+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999998873 489999999999987 999999997 5876 4577766543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=336.90 Aligned_cols=202 Identities=20% Similarity=0.248 Sum_probs=167.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 469999999999753 599999999999999999999999999999999999999999999954 2 159
Q ss_pred EEEcCCC-CCCc-ccHHhhcCcCCC-----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 194 SIIPQDP-TMFE-GSVHNNLDPLEE-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 194 ~~v~Q~~-~l~~-~tv~enl~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||+||++ .+++ .|+++|+.+... ....+...+++.+++... ..+..+.+||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5655 499999865321 112334456666665321 1234456789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeC-CEEE-EecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-GLIE-EFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~-G~i~-~~g~~~~l~~~ 340 (362)
++.+|++|||||||++||+.+...+.+.|.+.. .|||+|||+++.+.. ||+|++|++ |++. ..|++++.++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999998763 489999999999987 999999996 7876 47887776654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=338.65 Aligned_cols=200 Identities=21% Similarity=0.334 Sum_probs=166.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 369999999999753 5999999999999999999999999999999999999999999999741 259
Q ss_pred EEEcCCC--CCCc-ccHHhhcCc-CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDP--TMFE-GSVHNNLDP-LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~--~l~~-~tv~enl~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
||++|++ .+.. .|+.+++.. .......++.+++..+++... ........|||||||||+|||||+.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3333 377777632 112234556677777776421 1233445689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLL 338 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l~ 338 (362)
+|++|||||||++||+.+...+.+.|.+. . .|||+||||++.+.. ||||++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999887 3 499999999999987 9999999999997 678888763
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=282.05 Aligned_cols=154 Identities=38% Similarity=0.547 Sum_probs=142.9
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
++++++.|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.......+++.++|+|
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999754 5999999999999999999999999999999999999999999999999887665666778899999
Q ss_pred CCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEe
Q 018040 198 QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277 (362)
Q Consensus 198 Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLD 277 (362)
| ||+||+||++||||++.+|++++||
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9 7999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 278 EATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 278 EPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
|||++||+.++..+.+.+.+..+ ++|++++||+++.+.. ||++++|++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999987643 5899999999999998 79999999975
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=290.23 Aligned_cols=154 Identities=23% Similarity=0.246 Sum_probs=135.8
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcC
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQ 198 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 198 (362)
.|++++|++. .+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~~--~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVF--FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECCE--EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 5789999764 588884 9999999999999999999999999999999999999999853 788988
Q ss_pred CCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeC
Q 018040 199 DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278 (362)
Q Consensus 199 ~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDE 278 (362)
++. ||||||||++||||++.+|++++|||
T Consensus 69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 652 69999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhc-CC-ceEEEEecChhhhhh-cCeEEEEeCCEEEE--ecChhHHh
Q 018040 279 ATASVDTATDNLIQHTLGQHF-SD-CTVITIAHRITSVID-SDMVLLLSYGLIEE--FDSPTRLL 338 (362)
Q Consensus 279 Pts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~l~~~~~-~Dri~vl~~G~i~~--~g~~~~l~ 338 (362)
||++||+.+++.+.+.+.+.. ++ .|+|++||+++.+.. ||++++|+++-.+. .|.|....
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999998764 44 899999999999987 99999999886552 26655443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=338.45 Aligned_cols=199 Identities=18% Similarity=0.250 Sum_probs=163.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 3589999999999999999999999999999999999999999999865 2369
Q ss_pred EEEcCCCCCCcccHHhhcC--c---CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 SIIPQDPTMFEGSVHNNLD--P---LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~--~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
||++|++. ...++.+|.. + .....++++.++++.+++... .....+.+||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2223333321 1 122345677788888887532 123345678999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHH
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRL 337 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l 337 (362)
.+|++|||||||++||+.+...+.+.+.+. + .|||+|||+++.+.. |||+++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999888765 3 499999999999987 9999999999998 56766553
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=335.53 Aligned_cols=192 Identities=21% Similarity=0.280 Sum_probs=162.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. .|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ + ++
T Consensus 339 ~~l~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 339 TLVEYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred eEEEEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 359999999999652 5999999999999999999999999999999999999999999985 1 59
Q ss_pred EEEcCCCCCC-cccHHhhcCcCC-CC-CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPLE-EY-ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~~-~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
+|+||++.++ ..|+++|+.+.. .. ......++++.+++.+.. .....+|||||||||+|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-----------DKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998765 469999986531 11 123445677777765433 344566899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|++|||||||++||+.++..+.+.|++.. .++|+|+||||++.+.. ||||++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999864 37899999999999987 999999965 7777666
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=336.01 Aligned_cols=198 Identities=22% Similarity=0.249 Sum_probs=156.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 7899999999754 59999999999999999999999999999999999999999999998742 3778
Q ss_pred EcCCCCCCcccHHhhcCcC----------------------------------CCCCHHHHHHHHHHcCCChHHHhcccc
Q 018040 196 IPQDPTMFEGSVHNNLDPL----------------------------------EEYADEEIWEALDKCQLGNEVRKNEGK 241 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 241 (362)
++|++..+..++.+++... ......++.++++.+|+.+
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-------- 140 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-------- 140 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc--------
Confidence 8876433333433322100 0001122333444444321
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
........+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.+. +.|||+||||.+.+.. ||+|
T Consensus 141 --~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 141 --EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred --hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEE
Confidence 2234456679999999999999999999999999999999999999999999875 4699999999999987 9999
Q ss_pred EEEeCCEEEE-ecChhHHh
Q 018040 321 LLLSYGLIEE-FDSPTRLL 338 (362)
Q Consensus 321 ~vl~~G~i~~-~g~~~~l~ 338 (362)
++|++|+++. .|++....
T Consensus 217 ~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEeCCEEEEecCCHHHHH
Confidence 9999999974 67776554
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=336.63 Aligned_cols=198 Identities=21% Similarity=0.316 Sum_probs=164.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +||
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 59999999999753 5999999999999999999999999999999999999999999998 5332 599
Q ss_pred EEcCCC-CCCc-ccHHhhcCcCCC-C--C--HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 195 IIPQDP-TMFE-GSVHNNLDPLEE-Y--A--DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 195 ~v~Q~~-~l~~-~tv~enl~~~~~-~--~--~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
|++|++ .+++ .|+.+|+..... . . ..++.+.+..+++... .......+|||||||||+|||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHH
Confidence 999986 4555 499999864211 1 1 3345566666665321 22334556899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe-CCEEEE-ecChhHH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS-YGLIEE-FDSPTRL 337 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~-~G~i~~-~g~~~~l 337 (362)
+.+|++|||||||++||+.+...+.+.+++. +.|||+||||.+.+.. ||+|++|+ +|+++. .|+..+.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999999876 4599999999999987 99999998 899877 4666554
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=290.12 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=172.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 192 (362)
.-|+++||+++|+++ ++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+.....+. .++|++
T Consensus 30 ~li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 459999999999875 69999999999999999999999999999999999999999999999999887776 889999
Q ss_pred cEEEcCCCC-CC--cccHHhhcC--------cCC-CCCHHH---HHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 193 LSIIPQDPT-MF--EGSVHNNLD--------PLE-EYADEE---IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 193 i~~v~Q~~~-l~--~~tv~enl~--------~~~-~~~~~~---~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
||+|+-.-. -| ..+++|-+. .+. ..++++ ....++.+++.+. .++.-.+||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-----------a~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-----------ADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-----------ccCchhhcCHhH
Confidence 999986432 12 336666552 112 344433 3445666665543 333445689999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc---CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF---SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||+.|||||+++|++||||||++|||...++.+.+.+.+.. .+.++|+|||+.+++.. .++++.+++|+++..|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999999998864 25799999999999988 69999999999998774
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=286.07 Aligned_cols=215 Identities=24% Similarity=0.326 Sum_probs=173.2
Q ss_pred EEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 117 DIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 117 ~~~~l~~~y~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.+.|..+.|... .+++|+++|++|++|+++.|+|.||||||||+++|+|-+.|++|+|.|||+++..++..+....+
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 345555555332 34699999999999999999999999999999999999999999999999999999988877889
Q ss_pred EEEcCCCC--CC-cccHHhhcCcCCC------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPT--MF-EGSVHNNLDPLEE------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~--l~-~~tv~enl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+-|||+|. .+ +.|+.||+..... .......+..+ ...+.+..++.|++..++.+..-|||||||-++++
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~--~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHH--HHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 99999995 34 4599999954211 11100111100 11233445666788888888888999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
.|.++.|+||+|||-|++|||.+.+.+++.-.+.- .+-|.+||||+++.+-. -+|.++|++|+|+-+-+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999999999887743 35799999999998776 79999999999997644
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=278.58 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=129.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|..- .. .+++++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-KF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-cc----ccccEEEEhH-----------
Confidence 46899999999999999999999999999999986 3689999987521 11 2345888877
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC--CCEEEEeCCCCCCCHHH
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASVDTAT 287 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~--p~illLDEPts~LD~~~ 287 (362)
.++++.+++... .+++++.+||||||||++||||++.+ |+++||||||++||+.+
T Consensus 68 -------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 245666665321 24456678999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 288 DNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 288 ~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
.+.+.+.+++.. .++|||++||+++.+..||++++|++|+
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 999999998764 5799999999999887799999997643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=326.72 Aligned_cols=197 Identities=24% Similarity=0.250 Sum_probs=154.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~~--~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSDA--PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCCc--eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 48999999999753 59999999999999999999999999999999999999999999998731 256
Q ss_pred EEcCCCCCC-cccHHhhcCcCC-----------------------------------------CCCHHHHHHHHHHcCCC
Q 018040 195 IIPQDPTMF-EGSVHNNLDPLE-----------------------------------------EYADEEIWEALDKCQLG 232 (362)
Q Consensus 195 ~v~Q~~~l~-~~tv~enl~~~~-----------------------------------------~~~~~~~~~~l~~~~l~ 232 (362)
+++|.+... .+++.+++.... .....++.++++.+++.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 677654321 134444321000 00011222333333321
Q ss_pred hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh
Q 018040 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312 (362)
Q Consensus 233 ~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 312 (362)
......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|++.. .|||+||||..
T Consensus 150 -------------~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~ 214 (635)
T PRK11147 150 -------------PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRS 214 (635)
T ss_pred -------------CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHH
Confidence 244567899999999999999999999999999999999999999999998763 59999999999
Q ss_pred hhhh-cCeEEEEeCCEEEE-ecChhHHhh
Q 018040 313 SVID-SDMVLLLSYGLIEE-FDSPTRLLE 339 (362)
Q Consensus 313 ~~~~-~Dri~vl~~G~i~~-~g~~~~l~~ 339 (362)
.+.. ||+|++|++|+++. .|++.+.+.
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9987 99999999999985 588776554
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=349.39 Aligned_cols=211 Identities=20% Similarity=0.244 Sum_probs=174.4
Q ss_pred cEEEEEEEEEeCC-----------CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeC
Q 018040 115 EVDIHGLQVRYAP-----------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDI 181 (362)
Q Consensus 115 ~i~~~~l~~~y~~-----------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i 181 (362)
.+.++||++..+. +...+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998742 123599999999999999999999999999999999999874 689999999875
Q ss_pred CCCCHHHHhcCcEEEcCCCCCCc-ccHHhhcCcC------CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 182 SSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 182 ~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~------~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
. ...+++.+|||+|++.+++ .||+||+.+. ...+. +.+.++++.+++.+.. ++.++..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCC
Confidence 3 2346678999999988776 4999999642 11222 2356788888876532 34444332
Q ss_pred -CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhh-cCeEEEEeC-
Q 018040 251 -ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VID-SDMVLLLSY- 325 (362)
Q Consensus 251 -~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~-~Dri~vl~~- 325 (362)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++.. +|+|||+++|+++. +.. ||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999998864 57999999999984 444 999999996
Q ss_pred CEEEEecChh
Q 018040 326 GLIEEFDSPT 335 (362)
Q Consensus 326 G~i~~~g~~~ 335 (362)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=276.17 Aligned_cols=214 Identities=27% Similarity=0.321 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHH-hc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDL-RS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-r~ 191 (362)
.++++|++++-.++ +.+|++||++|++||+.+|.||||||||||.++|+|.- ++++|+|.++|+||.++++++. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 58999999999764 35999999999999999999999999999999999985 7899999999999999998875 45
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC----------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
-|...+|.|.=+++ ++.+.+.... .....++.+.++.+++.+.. ++..+++ .+|||||.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN~---GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVNE---GFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccCC---CcCcchHHH
Confidence 69999999998888 7777664210 11245667788888887632 2222332 579999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g~~~~l 337 (362)
..|+.+++.+|++.|||||-||||..+-+.+.+.+..+. ++.++++|||.-..+.+ .|+|.||-+|+|+..|.+ ++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999998865 57999999999888887 599999999999999999 66
Q ss_pred hh
Q 018040 338 LE 339 (362)
Q Consensus 338 ~~ 339 (362)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 54
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=305.69 Aligned_cols=263 Identities=23% Similarity=0.279 Sum_probs=210.9
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCCCccccCCCCCCCCCcccEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPN------EPPLVIEASRPNCSWPSQGEVD 117 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~ 117 (362)
..|.++-+-++.+......+...+.+++..+..+.+..+.+.|+.+|.+.-+ +.+.... ............|+
T Consensus 316 f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 394 (604)
T COG4178 316 FSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGIT 394 (604)
T ss_pred hcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeE
Confidence 4567766655555555555566677788889999999999999999974221 1110000 00000001145799
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
++|++..-+++. +.+++.+|++++||.+-|.||||||||||+|+|+|++|.-+|+|.+-. -..+-|+|
T Consensus 395 ~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflp 462 (604)
T COG4178 395 LENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLP 462 (604)
T ss_pred EeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEec
Confidence 999999998765 689999999999999999999999999999999999999999987641 12579999
Q ss_pred CCCCCCcccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 198 QDPTMFEGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 198 Q~~~l~~~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|.|++..+|.||-+++.. ..+++++.++|.+|+|.+..+++... ......||+|||||+++||.|+++|+++
T Consensus 463 Q~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v 537 (604)
T COG4178 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWV 537 (604)
T ss_pred CCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence 999999999999998643 36799999999999999988875433 2356679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
+|||+||+||+.++..+.+.+++...+.|||.|+|+.......++.+-+.
T Consensus 538 ~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred EEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999889999999999998877766655544
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=268.13 Aligned_cols=225 Identities=22% Similarity=0.371 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE-----eCCCCCHHH-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI-----DISSIGLHD- 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~-----~i~~~~~~~- 188 (362)
-+++.++|+.|++. ...++|||++.|||..+|||+||||||||+++|++-+.|++|+|.+.-. ++-.++..+
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 58899999999875 3689999999999999999999999999999999999999999998542 232333222
Q ss_pred ---HhcCcEEEcCCCC--CC-cccHHhhcC----c-CCCC---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 189 ---LRSRLSIIPQDPT--MF-EGSVHNNLD----P-LEEY---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 189 ---~r~~i~~v~Q~~~--l~-~~tv~enl~----~-~~~~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
+|...|||-|+|. +- .-|.-.|+. - ..++ ...+..++++++.+. .+.+.+.+..+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~----------~~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID----------LDRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC----------cccccCcccccc
Confidence 3556999999984 11 112233442 1 1111 133445566666553 234556677899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
|||+||+.|||-|+..|++++|||||.|||...+.++.++++.+.. +-.+++||||+..+.. +||.+||++|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999987643 6799999999999988 999999999999999
Q ss_pred cChhHHhhcCCcHHHHHHHH
Q 018040 332 DSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 332 g~~~~l~~~~~~~~~~~~~~ 351 (362)
|-.+.++..+...|.+++-.
T Consensus 234 GLTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred ccccccccCCCCchHHHHHH
Confidence 99999999998899988753
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=278.57 Aligned_cols=189 Identities=23% Similarity=0.331 Sum_probs=154.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
.++|+||||++++||.+||||+||||||||+++|+|.++|++|+|.++|.--.-+. -..|+-| +.|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~-----lg~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIE-----LGAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhh-----cccCCCc------ccchHH
Confidence 46899999999999999999999999999999999999999999999995321111 0122222 348999
Q ss_pred hcCcCC-------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 210 NLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 210 nl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
|+.+.. ...++.+.+..+-++|.++++. +..++|.||+-|+++|-|...+|+|||+||..+.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-----------PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-----------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-----------chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 986421 2234455556666666655554 3455699999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 283 VDTATDNLIQHTLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
-|+.-.+.=.+.+.+. .+++|+|+|||+++.++. |||+++|++|+++..|+++++...
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999888878888776 567999999999999998 999999999999999999999764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=327.48 Aligned_cols=192 Identities=22% Similarity=0.276 Sum_probs=156.5
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEeCCCCCHH-
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-----------IDGIDISSIGLH- 187 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~- 187 (362)
+++++|+++ ..+|++++ ++++||++||+||||||||||+++|+|+++|++|+|. ++|.++..+...
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 378999754 25899999 8999999999999999999999999999999999997 899887543211
Q ss_pred -HHhcCcEEEc----CCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 188 -DLRSRLSIIP----QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 188 -~~r~~i~~v~----Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
..+.++++.+ |.|.+|.+|+++|+.... ..+++.++++.+++.+.. ++...+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENIL-----------DRDISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 1112345444 455667779999986421 234567778877765432 3344568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
|||||+++|++|||||||++||+.++..+.+.|+++.+++|||+|||+++.+.. ||+|++|+++
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999886558999999999999988 9999999873
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=348.10 Aligned_cols=200 Identities=24% Similarity=0.248 Sum_probs=166.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV----EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 205 (362)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|.+|+|.+||+++.+.. ..+|+.++|++|+..+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999875432 2356679999999888864
Q ss_pred -cHHhhcCcCC----------CCCHHH-----HHHHHHHcCCChHHHhccccchhhhc-cCCCCCChhHHHHHHHHHHhc
Q 018040 206 -SVHNNLDPLE----------EYADEE-----IWEALDKCQLGNEVRKNEGKLESRVT-ENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 206 -tv~enl~~~~----------~~~~~~-----~~~~l~~~~l~~~~~~~~~~l~~~~~-~~g~~LSgGqrQRv~iAral~ 268 (362)
||+||+.+.. ....++ .+.+++.+++.+. .++.+| +....|||||||||+|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-------RNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-------cCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999996521 122221 2345677776543 345554 346789999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecCh-hhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRI-TSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
.+|++++|||||+|||+.+...+.+.|++.. .++|+|+++|++ +.+.. +|+|++|++|+++..|+++++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 9999999999999999999999999999864 378999999997 56665 999999999999999999887
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=281.75 Aligned_cols=198 Identities=25% Similarity=0.339 Sum_probs=155.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc-CCCCCC-cccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP-QDPTMF-EGSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv~ 208 (362)
++++||||+|++|++++++|+|||||||++|+|.|++.|++|.|.++|.+... ..+++-+++++|+ |...+. ...+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999987654 2334445566665 322222 11122
Q ss_pred hhcCc---CCCCCHHHHHH----HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 209 NNLDP---LEEYADEEIWE----ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 209 enl~~---~~~~~~~~~~~----~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
+-+.. ..+..+.+..+ ..+..+ ++..+..+...||-|||.|+.||.||+++|++|+|||||-
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLd-----------l~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILD-----------LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhc-----------chhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 22211 11233333333 223333 4445556667789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 282 SVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||..++..+.+.+++.. .++||++.||+++.+.. ||||+.|+.|+++..|+.+++.+.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 999999999999998754 57999999999999988 999999999999999999988654
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=255.80 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=162.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.+.++||+.+.++. ..|.++||+|.+||++.|.||||||||||+.-+.|.+.++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 47789999888765 6899999999999999999999999999999999999874 79999999999877643 57
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|++|||+++|+. +|.+|+.+.- +..+.....++++.++.....+.|. +||||||-||++-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----------tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA-----------TLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh-----------hcCcchHHHHHHH
Confidence 89999999999975 9999997632 1223445667888887776665554 4699999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhhcCeEEEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
|+|+..|+.++||||+|.||..-+..+.+..-.. ..+..+|+||||...+..-.||+-|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999888888877543 2478899999999988855566544
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=343.43 Aligned_cols=199 Identities=24% Similarity=0.262 Sum_probs=163.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-c
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-G 205 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 205 (362)
..+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999886543 2678999999988776 5
Q ss_pred cHHhhcCcCCC-------------CCHH----------H------------------HHHHHHHcCCChHHHhccccchh
Q 018040 206 SVHNNLDPLEE-------------YADE----------E------------------IWEALDKCQLGNEVRKNEGKLES 244 (362)
Q Consensus 206 tv~enl~~~~~-------------~~~~----------~------------------~~~~l~~~~l~~~~~~~~~~l~~ 244 (362)
||+||+.+... ...+ + ...+++.+|+.+ ..+|
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~-------~~~t 327 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDI-------CKDT 327 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc-------ccCc
Confidence 99999965210 0010 0 122344444432 2345
Q ss_pred hhc-cCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecCh-hhhhh-cCe
Q 018040 245 RVT-ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRI-TSVID-SDM 319 (362)
Q Consensus 245 ~~~-~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~~~-~Dr 319 (362)
.++ +....|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++.. .++|+|+++|++ +.+.. +|+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 553 3457899999999999999999999999999999999999999999999864 478999999997 35555 999
Q ss_pred EEEEeCCEEEEecChhHHh
Q 018040 320 VLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 320 i~vl~~G~i~~~g~~~~l~ 338 (362)
|++|++|+++..|+++++.
T Consensus 408 vilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EEEeeCceEEEeCCHHHHH
Confidence 9999999999999998875
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=304.56 Aligned_cols=209 Identities=24% Similarity=0.303 Sum_probs=161.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. ++++++||++.+|+++||||+|||||||||++|+|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g~~--~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCCc--eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 58999999999654 6999999999999999999999999999999999999999999998652 2599
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCCCC---H------------------HHHHHHHHHcCC---ChHHHhccccc--hhhhc
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEEYA---D------------------EEIWEALDKCQL---GNEVRKNEGKL--ESRVT 247 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~~~---~------------------~~~~~~l~~~~l---~~~~~~~~~~l--~~~~~ 247 (362)
|++|++.+.+. |+.+.+......- . .++.......+- ...+.....++ ... .
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 99999998865 8888764321100 0 001111111111 11111111222 111 4
Q ss_pred cCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
....+||||||.||+|||||+.+|++|||||||++||..+...+.+.|... ++ |+|+||||-.++.. |++|+-++.|
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCC
Confidence 456789999999999999999999999999999999999999999999865 45 99999999999999 9999999999
Q ss_pred EEEE-ecChhHHhh
Q 018040 327 LIEE-FDSPTRLLE 339 (362)
Q Consensus 327 ~i~~-~g~~~~l~~ 339 (362)
++.. .|..+...+
T Consensus 227 ~l~~y~Gny~~~~~ 240 (530)
T COG0488 227 KLTPYKGNYSSYLE 240 (530)
T ss_pred ceeEecCCHHHHHH
Confidence 8765 466655443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=316.47 Aligned_cols=221 Identities=16% Similarity=0.154 Sum_probs=159.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEECCEeCCCC--CH--
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV---EPTAGLIAIDGIDISSI--GL-- 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I~i~g~~i~~~--~~-- 186 (362)
..|+++|++++|++. ++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++.+... +.
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 359999999999754 5999999999999999999999999999999999864 57899998655543211 11
Q ss_pred ----------HHHhcCcEEEcCCCCCCcccHHhhcCcC--CCCC----HHHHHHHHHHcCCCh------HHHhcc--ccc
Q 018040 187 ----------HDLRSRLSIIPQDPTMFEGSVHNNLDPL--EEYA----DEEIWEALDKCQLGN------EVRKNE--GKL 242 (362)
Q Consensus 187 ----------~~~r~~i~~v~Q~~~l~~~tv~enl~~~--~~~~----~~~~~~~l~~~~l~~------~~~~~~--~~l 242 (362)
..+++.+++++|++.+...+..+|.... .... .+++.++++.+++.+ .+.... -++
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 0123457888987754332333332110 0011 123333333333211 111111 112
Q ss_pred h-hhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 243 E-SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 243 ~-~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
+ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEE
Confidence 1 2234456779999999999999999999999999999999999999999999876 6799999999999988 9999
Q ss_pred EEEeCCEEE-EecChhHHh
Q 018040 321 LLLSYGLIE-EFDSPTRLL 338 (362)
Q Consensus 321 ~vl~~G~i~-~~g~~~~l~ 338 (362)
++|++|++. ..|++++..
T Consensus 412 ~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred EEEECCEEEEeCCCHHHHH
Confidence 999999996 567766543
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=277.27 Aligned_cols=258 Identities=24% Similarity=0.310 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeE
Q 018040 59 FGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTC 138 (362)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl 138 (362)
..+.+..++.+++..+..+-.+.++.+|+.++...++..... . +...|.-..++++||.|.|.+.. .-+..||+
T Consensus 271 vlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~--~---~q~~p~~~~lelrnvrfay~~~~-FhvgPiNl 344 (546)
T COG4615 271 VLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP--R---PQAFPDWKTLELRNVRFAYQDNA-FHVGPINL 344 (546)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCC--C---CCcCCcccceeeeeeeeccCccc-ceecceee
Confidence 344556667777778888899999999999986533221111 1 11112234699999999998753 45889999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 218 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 218 (362)
+|++||++-|+|.|||||||++++|.|+++|++|+|++||++++.-+++++|+-++-||-|.++|+.++- +-...+
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as 420 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKAS 420 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999986542 112256
Q ss_pred HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-
Q 018040 219 DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ- 297 (362)
Q Consensus 219 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~- 297 (362)
.+.+...+++..+.+...-..+.+ ....||-|||+|+|+--|++-+.||+++||=-+.-||.-++.+.+.+..
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~f------s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~ 494 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRF------SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPL 494 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcc------cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHH
Confidence 677777887776655433222222 1246899999999999999999999999999999999999999887754
Q ss_pred h-cCCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 298 H-FSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 298 ~-~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
+ ..||||+.||||-.....|||++.|++|+++|.-
T Consensus 495 LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 495 LKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 2 3589999999999999999999999999998854
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=305.89 Aligned_cols=215 Identities=26% Similarity=0.325 Sum_probs=181.4
Q ss_pred ccEEEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCEeCCCCCHH
Q 018040 114 GEVDIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p---~~G~I~i~g~~i~~~~~~ 187 (362)
..+.++|+++.-.++ .+.+|++||.+++|||+.||+||||||||||+++|+|-.+. .+|+|++||+.. +.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chh
Confidence 358899999888665 36799999999999999999999999999999999999975 789999999543 456
Q ss_pred HHhcCcEEEcCCCCCCcc-cHHhhcCcC------CCC----CHHHHHHHHHHcCCChHHHhccccchhhhcc-CCCCCCh
Q 018040 188 DLRSRLSIIPQDPTMFEG-SVHNNLDPL------EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTE-NGENWSM 255 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~-tv~enl~~~------~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~g~~LSg 255 (362)
.+++..|||.||..+++. ||+|++.+. ... .+++++++++..++.+-. |+.+|. ....+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~-------~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCA-------DTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhc-------cceecCCCCCcccc
Confidence 788899999999998875 999998542 211 245677888888886433 344432 2357999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhh-cCeEEEEeCCEEEEec
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~-~Dri~vl~~G~i~~~g 332 (362)
|||+||+||.-|++||+||+|||||||||..+...+.+.|++.. +|+|||++=|+++. +-. .|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999865 58999999999964 444 9999999999999999
Q ss_pred ChhHHh
Q 018040 333 SPTRLL 338 (362)
Q Consensus 333 ~~~~l~ 338 (362)
+++++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 998764
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=252.35 Aligned_cols=136 Identities=41% Similarity=0.662 Sum_probs=122.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNL 211 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl 211 (362)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.+++. |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999887777889999999999988876 79999
Q ss_pred CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
..+++++++++.+++.+ ..+..++.++..||+|||||++|||||+++|+++|||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34567788888887654 24556666778899999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=286.71 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=169.7
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
...++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.- . -+
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~----------v~ 386 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T----------VK 386 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c----------eE
Confidence 3469999999999765 4699999999999999999999999999999999999999999998743 1 25
Q ss_pred cEEEcCCC-CCCc-ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 193 LSIIPQDP-TMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 193 i~~v~Q~~-~l~~-~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+||.+|+. .+++ .|+.+++.... ......+...|.++++...-. ......||||||-|+.+|+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhcc
Confidence 99999987 3343 38988886433 233678888999998764322 23345689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEe-cChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEF-DSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~-g~~~~l~~ 339 (362)
+|.+|||||||++||.++...+.+.|... .-|||+||||-.++.. |++|+.+++ ++... |.+++..+
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999999999999999999876 3599999999999999 999999998 77665 66665543
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=254.09 Aligned_cols=187 Identities=23% Similarity=0.338 Sum_probs=157.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++.+|++...+.. .++.++||++.+||.+-|.|||||||||||++|+|+.+|++|+|+++|.++.... +..++.+-|
T Consensus 3 L~a~~L~~~R~e~--~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERGER--TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhccCcc--eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 4567777766543 6899999999999999999999999999999999999999999999999886543 345677888
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
+-..+.+-. .|+.||+.|+.. .....+++++..++|....+. ...+||.|||+||||||-.+..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dl-----------p~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-----------PVGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccccc-----------chhhcchhHHHHHHHHHHHcCC
Confidence 888887765 499999987543 456789999999998754332 2345899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
++++||||||++||.+....+-..+.... +|-.||..||....+..
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999999998764 67899999998766543
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=313.98 Aligned_cols=215 Identities=21% Similarity=0.325 Sum_probs=187.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhcC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~ 192 (362)
..+.++++++.|+.... +++++|+.|++||+.|+.|+|||||||++++|.|..+|++|+++++|.++.... ..+.++.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999987654 899999999999999999999999999999999999999999999999986543 3457899
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+||+||+..+++. |.||.+.+.. ... .+.++..++.+++.+..+.. ...+|||+|+|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHHH
Confidence 9999999988865 9999986532 111 34467778888877655443 345799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
.|++-+|++++|||||+|+||.+++.+++.+.+..+ ++.+|++||.+++++. |||+.+|.+|++...|+++++.++
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999998765 4599999999999998 999999999999999999999754
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=259.78 Aligned_cols=188 Identities=20% Similarity=0.192 Sum_probs=127.0
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCccEEEEC-C------EeC---CCCCHHHHhc-CcEEEc
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLI-QTLFRIVEPTAGLIAID-G------IDI---SSIGLHDLRS-RLSIIP 197 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl-~~l~gl~~p~~G~I~i~-g------~~i---~~~~~~~~r~-~i~~v~ 197 (362)
..+|+++||+|++||+++|+|+||||||||+ ..+. .+|++.+. + ..+ ........+. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 3589999999999999999999999999996 4332 13433221 0 000 0000111121 244555
Q ss_pred CCCCCC--cc-cHH---hhcCcC----CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 198 QDPTMF--EG-SVH---NNLDPL----EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 198 Q~~~l~--~~-tv~---enl~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
|++... +. ++. +...+. ......+..+.++.+++.+ ...+..+.+||||||||++|||||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGY----------LTLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCc----------ccccCccCcCCHHHHHHHHHHHHH
Confidence 544321 11 221 111110 1111111233444444421 124566778999999999999999
Q ss_pred cCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCEEEEec
Q 018040 268 LKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFD 332 (362)
Q Consensus 268 ~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~i~~~g 332 (362)
+.+| +++||||||++||+.+...+.+.+++.. ++.|+|+|||+++.+..||||++| ++|+|+++|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9998 5999999999999999999999998754 578999999999988779999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=266.13 Aligned_cols=301 Identities=20% Similarity=0.230 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 15 AAAMQWLCFHIDMLSSIIFVFSLFFI-----ISVPEGVVDPAIAGLAVTF----GLNLNMLQASLISKLCNLENRIISVE 85 (362)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~ 85 (362)
.....|+.+..+.+-.+..++..+++ .....+.++|+.....+.. ...+...+..+......+.....-..
T Consensus 306 ~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~ 385 (659)
T KOG0060|consen 306 MSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTH 385 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHH
Confidence 34456777766666533222111110 0113345667665544432 22333344445555556666667788
Q ss_pred HHHHHhcCCCCC-----------------CCcc-ccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEE
Q 018040 86 RILQYMCIPNEP-----------------PLVI-EASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTG 147 (362)
Q Consensus 86 Rl~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ 147 (362)
|+.++++.-.+. .+.. ........+|.+..|++++|++.-|.+...+++|+||+|+.|+-+.
T Consensus 386 Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LL 465 (659)
T KOG0060|consen 386 RIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLL 465 (659)
T ss_pred HHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEE
Confidence 888887421110 0000 0011123456677899999999998765567788999999999999
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcC--------CCCCH
Q 018040 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL--------EEYAD 219 (362)
Q Consensus 148 ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~--------~~~~~ 219 (362)
|.||||||||+|++++.|+++..+|++.--...- -+.+-|+||.|++-.||+|+.+-+. ...++
T Consensus 466 ItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d 537 (659)
T KOG0060|consen 466 ITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASD 537 (659)
T ss_pred EECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEecCCCCccccchhheeeccCccccccccCCCH
Confidence 9999999999999999999999999997543211 0358999999999899999988543 23568
Q ss_pred HHHHHHHHHcCCChHHHhccccchh-hhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLES-RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
+++.+.|+.+++.+.+++. +|+|+ ...++...||+||+||+|.||.++++|++-||||.||++|.+.+..+.+.+++.
T Consensus 538 ~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 538 EDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 8999999999998877664 56664 456788899999999999999999999999999999999999999999999765
Q ss_pred cCCceEEEEecChhhhhhcCeEEEEeCC
Q 018040 299 FSDCTVITIAHRITSVIDSDMVLLLSYG 326 (362)
Q Consensus 299 ~~~~tvi~itH~l~~~~~~Dri~vl~~G 326 (362)
|.|.|.|+||-+..+.-|.++-|+.+
T Consensus 617 --giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 617 --GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred --CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 78999999999999999999999864
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=252.00 Aligned_cols=164 Identities=21% Similarity=0.255 Sum_probs=131.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---------cEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---------GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---------G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.++|.++... ..+++++++||++..+.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCce
Confidence 6789999999 999999999999999999999987653 4677777765432 23567999999997761
Q ss_pred ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCC
Q 018040 205 GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEAT 280 (362)
Q Consensus 205 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~----~~p~illLDEPt 280 (362)
. ....+++.++++. .+ .....+.+||||||||++|||+++ .+|++++|||||
T Consensus 90 ~----------~~~~~~~~~~l~~---~~-----------~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 S----------IISQGDVSEIIEA---PG-----------KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred e----------EEehhhHHHHHhC---CC-----------ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 1 0013345555544 11 123345679999999999999986 567999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++||+.....+.+.+++..++.|||++||+++.+..||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999987667899999999998877999999874
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=238.16 Aligned_cols=201 Identities=23% Similarity=0.303 Sum_probs=154.8
Q ss_pred cEEEEEEEEEeCCC-----CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--CE--eCCCCC
Q 018040 115 EVDIHGLQVRYAPH-----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID--GI--DISSIG 185 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-----~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~--g~--~i~~~~ 185 (362)
.+.++|++++|.-+ .-++++++||+++.||++++-||||||||||+++|-+-|.|++|+|.+. |. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 47888888887321 2368999999999999999999999999999999999999999999983 32 333333
Q ss_pred HHH---H-hcCcEEEcCCCCCCcc-cH----HhhcCc-C--CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 186 LHD---L-RSRLSIIPQDPTMFEG-SV----HNNLDP-L--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 186 ~~~---~-r~~i~~v~Q~~~l~~~-tv----~enl~~-~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+++ . |+.||||+|--...+- +. .|-+.- . .+....+....+.+.++.+.+-.+ .+..+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCccc
Confidence 332 3 4569999996544432 22 222211 1 111234455667777776655443 35668
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
||||+|||.|||.++.+-+||+|||||++||..+++.+.++|.+.+ +|..+|=|-||-+.-+. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999998865 68999999999887777 999988753
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-32 Score=253.31 Aligned_cols=193 Identities=23% Similarity=0.313 Sum_probs=139.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-----c-CC----CCCcc-----------EEEECCEeCCCCCHH---
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-----R-IV----EPTAG-----------LIAIDGIDISSIGLH--- 187 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-----g-l~----~p~~G-----------~I~i~g~~i~~~~~~--- 187 (362)
.|+|+|++|+.|+.++|.|+||||||||++.++ + +. .|..+ -|.+|..+|..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998663 1 11 12211 356666666432211
Q ss_pred -------HHhc----------------CcEEEcCCCCC-CcccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccc
Q 018040 188 -------DLRS----------------RLSIIPQDPTM-FEGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKL 242 (362)
Q Consensus 188 -------~~r~----------------~i~~v~Q~~~l-~~~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l 242 (362)
.+|+ .+.|..++... ...|+.|++.++.... ..+..++++.+++...
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l-------- 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI-------- 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh--------
Confidence 0111 12233333322 2346667665543221 2334455555555321
Q ss_pred hhhhccCCCCCChhHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcC
Q 018040 243 ESRVTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSD 318 (362)
Q Consensus 243 ~~~~~~~g~~LSgGqrQRv~iAral~~~---p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~D 318 (362)
.+++...+|||||+||++|||+|+++ |+++||||||++||+.....+.+.+++.. ++.|+|+|||+++.+..||
T Consensus 162 --~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD 239 (261)
T cd03271 162 --KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCAD 239 (261)
T ss_pred --hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 34666778999999999999999996 79999999999999999999999998765 4789999999999998899
Q ss_pred eEEEE------eCCEEEEecCh
Q 018040 319 MVLLL------SYGLIEEFDSP 334 (362)
Q Consensus 319 ri~vl------~~G~i~~~g~~ 334 (362)
++++| ++|+|++.|+|
T Consensus 240 ~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEEecCCcCCCCCEEEEeCCC
Confidence 99999 89999999975
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=248.67 Aligned_cols=191 Identities=19% Similarity=0.257 Sum_probs=131.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC----------------CCCCcc-------
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI----------------VEPTAG------- 172 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl----------------~~p~~G------- 172 (362)
|+++|. ++|++. .++.+++ |++++|+||||||||||+++|.++ +.+.+|
T Consensus 4 i~~~nf-ksy~~~--~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGF-KSYKDQ--TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCc-cCcccC--cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 556654 346543 3777776 899999999999999999999844 444444
Q ss_pred -EEEECCEeCCC-C--CHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHH--hcc-------
Q 018040 173 -LIAIDGIDISS-I--GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVR--KNE------- 239 (362)
Q Consensus 173 -~I~i~g~~i~~-~--~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~--~~~------- 239 (362)
+|.+++.+-.. . ....+++.++++||++.++.. ..+.+++...+..+++...-. ..+
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l 145 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL 145 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh
Confidence 44444422100 0 111234556666666554431 223455666666666543100 000
Q ss_pred ccchhhhccCCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 240 GKLESRVTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 240 ~~l~~~~~~~g~~LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
..+....++.+.+||||||||++||||++ .+|+++||||||++||+.+.+.+.+.+++..+++|+|++||+.+...
T Consensus 146 ~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~ 225 (243)
T cd03272 146 TNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLE 225 (243)
T ss_pred hhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 11223345678899999999999999996 36899999999999999999999999988766788898899877665
Q ss_pred hcCeEEEEe
Q 018040 316 DSDMVLLLS 324 (362)
Q Consensus 316 ~~Dri~vl~ 324 (362)
.||++++|+
T Consensus 226 ~~d~i~~l~ 234 (243)
T cd03272 226 VADKFYGVK 234 (243)
T ss_pred hCCEEEEEE
Confidence 699999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=241.81 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=137.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEe-CCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFL-GGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~-~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|.+ ++.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58888887 66543 46677654 589999999999999999999995 555555555433 11111222234556
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC---
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK--- 269 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~--- 269 (362)
|++++|++.... + +.... ..+.+...+... + ...++++.+...+.+||+||+||++||||++.
T Consensus 78 v~~~f~~~~~~~-~---~~r~~-gl~~~~~~~~~~---l------~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~ 143 (213)
T cd03279 78 VSFTFQLGGKKY-R---VERSR-GLDYDQFTRIVL---L------PQGEFDRFLARPVSTLSGGETFLASLSLALALSEV 143 (213)
T ss_pred EEEEEEECCeEE-E---EEEec-CCCHHHHHHhhh---h------hhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHH
Confidence 999999873211 1 11111 223333322210 0 01124566677788899999999999999985
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 270 -------KSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 270 -------~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+|+++||||||++||+.+...+.+.+.+..+ +.|+|+|||+++.+.. ||++++|++|-+
T Consensus 144 ~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 144 LQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 5789999999999999999999999988754 7899999999999887 899999999853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-32 Score=231.11 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=169.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++||+..- -|-.+|.++..||++-+|||||||||||+..++|+.+ .+|+|.++|.++..++..++.++-+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHH
Confidence 5667776533 3667899999999999999999999999999999975 68999999999999999999899999
Q ss_pred EcCCCC-CCcccHHhhcCcCCCC--CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC---
Q 018040 196 IPQDPT-MFEGSVHNNLDPLEEY--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK--- 269 (362)
Q Consensus 196 v~Q~~~-l~~~tv~enl~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~--- 269 (362)
+.|+.. .|...|..++....+. ....+.++....++ +..+++...+|||||+|||-+|-..++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 998753 5666788888654432 12334445555544 444555667799999999999999886
Q ss_pred --C--CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 270 --K--SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 270 --~--p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
| .++||+|||.++||...+..+...+.+.. .|.+|||.+||++. +..||+++.++.|++...|..+|++..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 2 47999999999999999988888887764 68999999999975 555999999999999999999999864
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=255.50 Aligned_cols=206 Identities=21% Similarity=0.313 Sum_probs=165.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 193 (362)
.++++|++..- .++|+||++++||++||.|--|||+|-|+++|+|..++.+|+|.+||+++.-.++. ..+..|
T Consensus 263 ~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 46777776421 47999999999999999999999999999999999999999999999998776655 567789
Q ss_pred EEEcCCC---CCC-cccHHhhcCcC--CC------CCHHH----HHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 194 SIIPQDP---TMF-EGSVHNNLDPL--EE------YADEE----IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 194 ~~v~Q~~---~l~-~~tv~enl~~~--~~------~~~~~----~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
+|||.|- .++ ..+|++|+... .. .+..+ ..+..+.+++. . ........+||||-
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik------~----~s~~~~v~~LSGGN 406 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK------T----PSPEQPIGTLSGGN 406 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcc------c----CCccchhhcCCchh
Confidence 9999975 355 45999999642 11 11111 12222222221 1 11224456799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
+|||.|||.|+.+|++|||||||.|+|..++..|.+.++++. +|++||+||-++.++.. ||||+||++|+++..-+.+
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999999875 68999999999999887 9999999999999865554
Q ss_pred H
Q 018040 336 R 336 (362)
Q Consensus 336 ~ 336 (362)
+
T Consensus 487 ~ 487 (500)
T COG1129 487 E 487 (500)
T ss_pred c
Confidence 4
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-30 Score=237.40 Aligned_cols=181 Identities=19% Similarity=0.260 Sum_probs=136.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCE-eCCCCC-H-HHHhcCcEEEcCCCC---------CC-cccHH
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGI-DISSIG-L-HDLRSRLSIIPQDPT---------MF-EGSVH 208 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~-~i~~~~-~-~~~r~~i~~v~Q~~~---------l~-~~tv~ 208 (362)
..+++||||||||||||+++|++++.+. .|+++..|. ++-... . ...+.++++++|++. +. ..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 468888776 432111 1 112347999999862 22 23777
Q ss_pred hhcCcC---------CCCCHHHHHHHHHHcCCCh----------HHHhccccchhhhccCCCCCChhHHHHHHHHHHhc-
Q 018040 209 NNLDPL---------EEYADEEIWEALDKCQLGN----------EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL- 268 (362)
Q Consensus 209 enl~~~---------~~~~~~~~~~~l~~~~l~~----------~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~- 268 (362)
+|+... .....+++.++++.+++.. .+..... ........+.+||+|||||++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN-MGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH-hHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 776421 1123567788899888751 1111111 123455677889999999999999997
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 269 ---KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 269 ---~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
.+|+++||||||++||+.+.+.+.+.+++..++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998777889999999977777799998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=229.83 Aligned_cols=164 Identities=22% Similarity=0.245 Sum_probs=126.1
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHH----cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC-----CCCc-c
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLF----RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-----TMFE-G 205 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~l~~-~ 205 (362)
.++++.+| +++|+||||||||||+++|. |..+|.+|.+..+...+.. ...+..+++++|++ .+.. .
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34567777 99999999999999999994 9989888877622222221 12356799999998 2222 2
Q ss_pred cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH------HHHHHHhcCCCCEEEEeCC
Q 018040 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL------VCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 206 tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR------v~iAral~~~p~illLDEP 279 (362)
|+.+|+.+.. .+++.+. +.+.+.+||+||+|| ++||||++.+|++++||||
T Consensus 92 ~~~~~~~~~~---~~~~~~~--------------------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFCH---QGESNWP--------------------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeeec---hHHHHHH--------------------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 7778875431 2222222 144556789999996 7899999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCC
Q 018040 280 TASVDTATDN-LIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYG 326 (362)
Q Consensus 280 ts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G 326 (362)
|++||+.+.. .+.+.+.+..+ +.|+|++||+++.+..||++++|++.
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 9999999999 99999988654 68999999999988779999999753
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-30 Score=232.81 Aligned_cols=184 Identities=21% Similarity=0.266 Sum_probs=131.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh-cCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~i 193 (362)
.|+++|.- +|++. .+++++++ ++++|+|||||||||++++|. +++|.+. ...| +++
T Consensus 5 ~l~l~nfk-~~~~~--~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAGE--QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCCC--eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence 47777775 77643 48898887 899999999999999999997 3345332 1223 569
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCCh----------HHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGN----------EVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++++|+..+++. |+++++.++...... ..++..+... .+.. ..++..........||+|||||++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~-~~~L~~~~~~~~~~lS~G~~~r~~ 137 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQ-IAQMPKKSWKNISNLSGGEKTLSS 137 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEE-eeccccccccchhhcCHHHHHHHH
Confidence 999999877654 777776544322110 0111111100 0000 011222234445679999999999
Q ss_pred HHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 263 LARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 263 iAral~~----~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
||||++. +|++++|||||++||+.+...+.+.+++..++.|+|++||+.+....||||++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999963 58999999999999999999999999988777899999999766666999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=218.11 Aligned_cols=229 Identities=22% Similarity=0.329 Sum_probs=183.8
Q ss_pred EEEEEEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEeCCCCCHHHH
Q 018040 116 VDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 116 i~~~~l~~~y~--~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~ 189 (362)
+.++|++..+. .+...+++++|+++..||+-|+||+||||||-+.|+|.|..+- +..+..+++.++-.+++++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 55667666553 2333489999999999999999999999999999999999763 45667788888888888876
Q ss_pred hc----CcEEEcCCCCCC--c-ccH----HhhcCcC-------CC--CCHHHHHHHHHHcCCChHHHhccccchhhhccC
Q 018040 190 RS----RLSIIPQDPTMF--E-GSV----HNNLDPL-------EE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249 (362)
Q Consensus 190 r~----~i~~v~Q~~~l~--~-~tv----~enl~~~-------~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~ 249 (362)
|+ .|+++||+|.-- + .++ -+||-.. .. ..+.+..+.+.++|+.+..+ .+...
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--------IM~SY 155 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------IMRSY 155 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--------HHHhC
Confidence 64 588999999532 2 133 3455221 11 12455667888899876433 23344
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 250 g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
+.+|--||-|+|.||.|++.+|++||.||||+++|+.++.+++.++.... ++.||++++||+..+.. ||+|-||.-|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 56689999999999999999999999999999999999999999998764 46899999999999987 9999999999
Q ss_pred EEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 327 LIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 327 ~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
+-+|.++.+++++.+...|.+.+...
T Consensus 236 Q~~ESa~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 236 QTVESAPSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred ccccccchhHHhcCCCCchHHHHHHh
Confidence 99999999999999888888766543
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=248.58 Aligned_cols=193 Identities=21% Similarity=0.328 Sum_probs=159.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.+.++|++|+|+++. .++++++|-|..++++++|||||+|||||||++.|.+.|..|.|.-.-. .++
T Consensus 388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 3599999999998764 6899999999999999999999999999999999999999999864322 234
Q ss_pred EEEcCCCC---CCcccHHhhcCc-CC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 SIIPQDPT---MFEGSVHNNLDP-LE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~~v~Q~~~---l~~~tv~enl~~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
++.-|+.. -++.+..+++.. +. ....+++...+.++|+....+..| ..+||+|||.||++||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHh
Confidence 55555432 234566777643 22 245677888999999975544333 2468999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
++|.||+|||||++||.++...+.+.|.++ ..+||+||||...+.. +++|++.++|.+..
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 999999999999999999999999999876 3489999999999998 99999999998765
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=260.24 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=94.0
Q ss_pred hhccCCCCCChhHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeE
Q 018040 245 RVTENGENWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 245 ~~~~~g~~LSgGqrQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri 320 (362)
.+++...+||||||||+.|||+|+++| +++||||||++||+.....+.+.|+++. ++.|||+|||+++.+..||+|
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 367788899999999999999999999 9999999999999999999999998864 579999999999999889999
Q ss_pred EEE------eCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 321 LLL------SYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 321 ~vl------~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
++| ++|+|++.|+++++...+.+.-.+++.
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~ 938 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLK 938 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHH
Confidence 999 799999999999998776543334443
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=263.62 Aligned_cols=100 Identities=30% Similarity=0.272 Sum_probs=89.1
Q ss_pred cchhh-hccCCCCCChhHHHHHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhh
Q 018040 241 KLESR-VTENGENWSMGQRQLVCLARVLL---KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI 315 (362)
Q Consensus 241 ~l~~~-~~~~g~~LSgGqrQRv~iAral~---~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~ 315 (362)
++... +++...+|||||+||++|||||+ ++|+++||||||++||+.+.+.+.+.|+++. ++.|||+|||+++.+.
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~ 876 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVK 876 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34443 56777889999999999999998 6999999999999999999999999998864 5789999999999996
Q ss_pred hcCeEEEEe------CCEEEEecChhHHhhc
Q 018040 316 DSDMVLLLS------YGLIEEFDSPTRLLEN 340 (362)
Q Consensus 316 ~~Dri~vl~------~G~i~~~g~~~~l~~~ 340 (362)
.||+|++|. +|++++.|+++++...
T Consensus 877 ~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~ 907 (1809)
T PRK00635 877 VADYVLELGPEGGNLGGYLLASCSPEELIHL 907 (1809)
T ss_pred hCCEEEEEccCCCCCCCEEEEeCCHHHHHhc
Confidence 699999996 7899999999999764
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-28 Score=223.46 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=135.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe-C-CC-----CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID-I-SS-----IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-i-~~-----~~~~ 187 (362)
.++++|. ..|.+. .++...++ +++|+||||||||||+.+|.+++.+..|++..++.+ + .. .+..
T Consensus 3 ~i~l~nf-~~~~~~-------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGR-------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCC-------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 3677775 455321 12233344 999999999999999999999998877887654321 1 00 0111
Q ss_pred HHhcCcEEEcCCCC--CCcccHHhhcC---c-CCCCCHHHHHHHHHHcCCChHHHhc--ccc-chhhh--------ccCC
Q 018040 188 DLRSRLSIIPQDPT--MFEGSVHNNLD---P-LEEYADEEIWEALDKCQLGNEVRKN--EGK-LESRV--------TENG 250 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~--l~~~tv~enl~---~-~~~~~~~~~~~~l~~~~l~~~~~~~--~~~-l~~~~--------~~~g 250 (362)
...-.+.|..|++. .+..++++... . ....+.+++.+.++.+++..+.... +.| .+... ....
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 11223444445432 22223333221 1 1234566778888998885332111 111 11111 2234
Q ss_pred CCCChhHHHHHHHHHHhcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhhcCeEEEEeC
Q 018040 251 ENWSMGQRQLVCLARVLLKK----SKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~----p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
.+||+|||||++||||++.+ |+++||||||++||+.....+.+.+.+..+ +.|+|+|||+.+.+..||++++|..
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 78999999999999999864 899999999999999999999999988754 7899999999888877999999874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=229.82 Aligned_cols=214 Identities=20% Similarity=0.339 Sum_probs=173.1
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC-CCCCHHHHh
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI-SSIGLHDLR 190 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i-~~~~~~~~r 190 (362)
...-++++|++..-... ...+++|||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...+..++|
T Consensus 254 g~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 34569999999876543 3589999999999999999999999999999999999999999999999997 666777765
Q ss_pred c-CcEEEcCCCC----CCcccHHhhcCcCCC----------CCHHHHHH----HHHHcCCChHHHhccccchhhhccCCC
Q 018040 191 S-RLSIIPQDPT----MFEGSVHNNLDPLEE----------YADEEIWE----ALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 191 ~-~i~~v~Q~~~----l~~~tv~enl~~~~~----------~~~~~~~~----~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
+ .++|||.|.. ....|+.||+.+... .....+.+ .++++... +.+ ...+..
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr------~~~----~~~~a~ 402 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR------APS----PDAPAR 402 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc------CCC----CCcchh
Confidence 4 5999999873 345699999853211 11222222 22222211 111 123456
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+||||.+||+-+||-|.++|++||..+||-|||..+.+.|.+.|.+.. +|+.|++||-+++++.. ||||.||.+|+++
T Consensus 403 ~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 403 SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 799999999999999999999999999999999999999999988754 68999999999999988 9999999999999
Q ss_pred EecChhH
Q 018040 330 EFDSPTR 336 (362)
Q Consensus 330 ~~g~~~~ 336 (362)
...++++
T Consensus 483 ~~~~~~~ 489 (501)
T COG3845 483 GIVPPEE 489 (501)
T ss_pred ccccccc
Confidence 8887766
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-27 Score=229.07 Aligned_cols=225 Identities=20% Similarity=0.256 Sum_probs=148.3
Q ss_pred CCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE--CCEeCCCCCHHH
Q 018040 111 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI--DGIDISSIGLHD 188 (362)
Q Consensus 111 ~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i--~g~~i~~~~~~~ 188 (362)
|....+.++|+++.|.+. +.++|++|++.+|+++||+|+|||||||+|++|.|-..|..-++-+ -...+..-....
T Consensus 71 ~~s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred cccccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 334569999999999765 5899999999999999999999999999999999998886544432 111111000000
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcC-CCCCH---HHHHHHHHHcCCChHHHh---cc---ccchhhhccCCCCCChhHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPL-EEYAD---EEIWEALDKCQLGNEVRK---NE---GKLESRVTENGENWSMGQR 258 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~-~~~~~---~~~~~~l~~~~l~~~~~~---~~---~~l~~~~~~~g~~LSgGqr 258 (362)
+..-+-...++..-.. --.|++.-. .+... ..+++.+...+.+.+-.+ .. .-+.........+||||||
T Consensus 149 v~~v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHHhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 0000000000000000 000111110 01011 122222333332221111 00 1134445566778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCE-EEEecChhH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL-IEEFDSPTR 336 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~-i~~~g~~~~ 336 (362)
.|++|||||+.+|++|+|||||++||+++...+.+.|.+.... ++++++|.-+++.. |..|+.|++++ +...|+.+.
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 9999999999999999999999999999999999999876433 89999999999998 99999999999 566777776
Q ss_pred Hhh
Q 018040 337 LLE 339 (362)
Q Consensus 337 l~~ 339 (362)
...
T Consensus 307 y~~ 309 (614)
T KOG0927|consen 307 YVK 309 (614)
T ss_pred Hhh
Confidence 543
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-28 Score=255.76 Aligned_cols=199 Identities=23% Similarity=0.280 Sum_probs=166.1
Q ss_pred CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC-c
Q 018040 128 HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-E 204 (362)
Q Consensus 128 ~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 204 (362)
+.+.+|+||+=-++||-.+||+|+|||||||||++|+|=.. ..+|+|+++|.+..+ +..+|.+|||-|+.... .
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999998753 247999999998643 56889999999987544 4
Q ss_pred ccHHhhcCcC------CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC-CE
Q 018040 205 GSVHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS-KV 273 (362)
Q Consensus 205 ~tv~enl~~~------~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p-~i 273 (362)
.||||-|.+. .+.+. +-++++++.+++.+.. |..+|..|..||..||+|+.||=-|+.+| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 5999988642 22232 3467788888876543 45677888999999999999999999999 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh--hhhcCeEEEEeC-CEEEEecChhH
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS--VIDSDMVLLLSY-GLIEEFDSPTR 336 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~Dri~vl~~-G~i~~~g~~~~ 336 (362)
|+|||||||||.++...+++.+++.. .|+||++.-|+++. .+..|+++.|+. |+.+..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999865 68999999999974 345999999986 59999998654
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-27 Score=209.68 Aligned_cols=172 Identities=19% Similarity=0.202 Sum_probs=119.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC-CHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI-GLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|..+.++ ....-...|.+.+|+..++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46778888887 8899999999999999999754432211 01112211000 00011245778888776554 2
Q ss_pred CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHH
Q 018040 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL----LKKSKVLVLDEATASVDTAT 287 (362)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral----~~~p~illLDEPts~LD~~~ 287 (362)
.........+.++++. .....+...+||+|||||++||+|+ +.+|+++||||||++||+.+
T Consensus 84 -~~~~~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 -PLCVLSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred -cCCHHHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 1111112333333332 1223456678999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHhhc-C---CceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 288 DNLIQHTLGQHF-S---DCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 288 ~~~i~~~l~~~~-~---~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
...+.+.|.+.. + ++|||++||+++.+..+|+|.+|..++
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999988753 2 358999999999999999999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=224.53 Aligned_cols=195 Identities=22% Similarity=0.294 Sum_probs=164.1
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+-+++.+|+|.|+++..+.+.+++++++.-++++++|+||+||||+++++.+-..|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 446999999999988765689999999999999999999999999999999999999999987765 568
Q ss_pred cEEEcCCCCCC-cccH--HhhcC-cCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 193 LSIIPQDPTMF-EGSV--HNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 193 i~~v~Q~~~l~-~~tv--~enl~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
|+|-+|...=+ +..+ .+-.. ......++++++.+..+|+...+...+ ...||||||-||++|.+..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 99999976322 2222 12111 122337899999999999876655432 2458999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
.+|.+|+|||||+.||.++-..+-+.|+.. +..||+|||+.+++.. |+.+++.++|++..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999876 3489999999999998 99999999999976
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=239.08 Aligned_cols=97 Identities=23% Similarity=0.301 Sum_probs=87.7
Q ss_pred cchh-hhccCCCCCChhHHHHHHHHHHhcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhh
Q 018040 241 KLES-RVTENGENWSMGQRQLVCLARVLLK---KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI 315 (362)
Q Consensus 241 ~l~~-~~~~~g~~LSgGqrQRv~iAral~~---~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~ 315 (362)
+++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.....+.+.|+++. ++.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3443 4678889999999999999999997 599999999999999999999999998864 5799999999999998
Q ss_pred hcCeEEEE------eCCEEEEecChhHH
Q 018040 316 DSDMVLLL------SYGLIEEFDSPTRL 337 (362)
Q Consensus 316 ~~Dri~vl------~~G~i~~~g~~~~l 337 (362)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999876
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-26 Score=224.04 Aligned_cols=198 Identities=21% Similarity=0.294 Sum_probs=143.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|...+++..|+++ .+|++-++++..|-++|+|||||+||||||++|+. |.|.....+ +++|..-
T Consensus 79 ~Di~~~~fdLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~~ 144 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGDD 144 (582)
T ss_pred cceeeeeeeeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheeccc
Confidence 469999999999865 58999999999999999999999999999999998 444332211 1111111
Q ss_pred EEEcCCCCCCcccHHhhcCcC-----CCCCHHHHHH-HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 194 SIIPQDPTMFEGSVHNNLDPL-----EEYADEEIWE-ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~-----~~~~~~~~~~-~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
...-|+ .+-..+-+..+... .....+++.. +|.-+|..+.....|- .+||||-|-|++|||||
T Consensus 145 t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 145 TEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARAL 213 (582)
T ss_pred hHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHH
Confidence 111111 11122222222110 1112344444 7777777766555443 46899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHh
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLL 338 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l~ 338 (362)
..+||||||||||+.||..+...+.+.|..+. .|+|+||||-+++.. |.-||.+++-|+- ..|+.++..
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 99999999999999999999999999998764 799999999999998 9999999886653 346655544
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=216.05 Aligned_cols=182 Identities=23% Similarity=0.347 Sum_probs=135.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++..++++.|++- .|.-=.=+|..||+++++||||-||||++++|+|.++|++|+ ..+ -+++|
T Consensus 343 v~y~~~~k~~g~F---~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 343 VEYPDLKKTYGDF---KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred eecchheeecCce---EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 4444555555421 233333345668999999999999999999999999999998 222 25889
Q ss_pred EcCCCC-CCcccHHhhcCcCCC--CCHHHH-HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 196 IPQDPT-MFEGSVHNNLDPLEE--YADEEI-WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 196 v~Q~~~-l~~~tv~enl~~~~~--~~~~~~-~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
=||-.. -|++||++-+.-... +....+ .+.++-+ .++..+.++..+|||||.|||+||.||.+++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl-----------~l~~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL-----------NLEDLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc-----------chHHHHhcccccCCchhHHHHHHHHHhcccc
Confidence 999543 367899887642111 111111 1223333 3444555566678999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
++++||||++.||.+.+-.+.+.|++.. .++|.++|-||+-.+.. +||++|.+.
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999999999998753 46899999999999998 999999973
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-26 Score=216.91 Aligned_cols=193 Identities=22% Similarity=0.295 Sum_probs=154.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.+-+.+|+|.|++.. +.++.++|-|.--.++|||||||.||||||++|.|-+.|..|+.+-+- |-+|
T Consensus 585 PvLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred CeeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4588999999998764 689999999999999999999999999999999999999999876432 3469
Q ss_pred EEEcCCCC--CC-cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 194 SIIPQDPT--MF-EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 194 ~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|+.-|+.. |- ..|..|.+.-.-....++.+..|-.+||....... ....||||||-||++|-.-+..
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCC
Confidence 99999763 22 33777776533344566777788877775432211 2346899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhc-CeEEEEeCCEEEE
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS-DMVLLLSYGLIEE 330 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~-Dri~vl~~G~i~~ 330 (362)
|++|||||||++||.++...+.+.|.+.. ..||+||||-..+... -..+|+++-.|-+
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCChhh
Confidence 99999999999999999999999998763 4899999999888773 3567777655533
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=211.17 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=160.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|.++|+-.--|... .++..++|.|++|--+.|.||||||||+|.++|.|++|...|...+-- +.++
T Consensus 480 ~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~m 547 (728)
T KOG0064|consen 480 NGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNI 547 (728)
T ss_pred cceEEecCceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------Ccce
Confidence 3588999988777654 578999999999999999999999999999999999999888775421 3469
Q ss_pred EEEcCCCCCCcccHHhhcCcC--------CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEGSVHNNLDPL--------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~--------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
-|+||.|++--+|.||.+-+. +.+.+.++...|..+.|+..+++ ..|.| .+.++-.-||||||||+++||
T Consensus 548 FYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~d-a~~dWkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 548 FYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWD-AVRDWKDVLSGGEKQRMGMAR 625 (728)
T ss_pred EeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChh-hhccHHhhccchHHHHHHHHH
Confidence 999999998878999987542 24678889999999988765544 44454 334455679999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
.++++|+.-+|||.||++-++.+..+.+..+.. |.+.|-||||++....-..++-.
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999999999999999988764 78999999999988765555544
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-24 Score=185.57 Aligned_cols=209 Identities=20% Similarity=0.205 Sum_probs=151.1
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
...|++.++.|+|+... |++-|+|++++.|.+..+||.||||||||||+|+|-.-.-.|.|.+.|.+--.-..-.-...
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 45799999999998765 69999999999999999999999999999999999877777999999986532110000112
Q ss_pred cEEEcCC-----------CCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 193 LSIIPQD-----------PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 193 i~~v~Q~-----------~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
..|+--+ |.--+.++.+-|.-....+.++-++.++. ||-.+.=+-..+|-|||+||
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDI-------------LDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhh-------------eeccceEEEeeccccchhhh
Confidence 3333221 11111133222211111111222222222 22222223455899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
.||..|++.-++|+|||-|-.||...+..+.+.+++. .+++||+..||-.+-++. +.+++.|.+|+++..-+.+
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999999999999875 358999999999998887 9999999999998844433
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=188.57 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=107.1
Q ss_pred eeeeeeEEEeCCc-EEEEEcCCCccHHHHHHHHH--------cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 132 VLRGLTCTFLGGM-KTGIVGRTGSGKSTLIQTLF--------RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 132 vL~~isl~i~~Ge-~~~ivG~nGsGKSTLl~~l~--------gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
.+-++||++.+|+ +++|+||||||||||+++|. |++-|....+ .++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe
Confidence 3557999999996 79999999999999999998 5554432111 23343333211
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
+. . +..+.++...+|+||||++.|++++ .+|+++++|||+++
T Consensus 79 lg--------------------------~-----------~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 IG--------------------------D-----------EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred cC--------------------------c-----------hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 00 0 0011112235699999999999885 89999999999999
Q ss_pred CCHHHHHHHH-HHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 283 VDTATDNLIQ-HTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 283 LD~~~~~~i~-~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
+|+.....+. ..++... .+.|+|++||+.+....||++++|++|++...+
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999988875 4565543 478999999996655569999999999998663
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-23 Score=181.69 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhhcCeEEEEeC
Q 018040 253 WSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 253 LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
||+|||||++|||+++ .+|+++++|||+++||+.....+.+.+.+..+ ++|+|++||+++.+..+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 8999999999999995 69999999999999999999999999987643 5899999999998888999999986
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=194.26 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=69.3
Q ss_pred CCChhHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 252 NWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~----~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
.|||||+||+++|++++. +|+++||||||++||+.+...+.+.+.+..++.|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998777889999999999776699999999874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=183.62 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=108.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hc-----CcEEEcCCCCCCcccH
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RS-----RLSIIPQDPTMFEGSV 207 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~-----~i~~v~Q~~~l~~~tv 207 (362)
+++.+++.+| +.+|+||||||||||+.+|.-.+-...... ... ....++ +. .|-..++...- .-.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~~~--~~~ 85 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGNPG--NIQ 85 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeCCC--ccc
Confidence 4556666554 779999999999999999876553221100 000 011111 10 11111211100 002
Q ss_pred HhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH----hcCCCCEEEEeCCCCCC
Q 018040 208 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV----LLKKSKVLVLDEATASV 283 (362)
Q Consensus 208 ~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra----l~~~p~illLDEPts~L 283 (362)
.+|+... ...+...++.... -.+.+..++.+.+ ....++.+||+|||||+.+|++ ++.+|+++|+||||++|
T Consensus 86 ~~n~~~~--~~q~~~~~~~~~~-~~e~l~~~~~~~~-~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~L 161 (213)
T cd03277 86 VDNLCQF--LPQDRVGEFAKLS-PIELLVKFREGEQ-LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGM 161 (213)
T ss_pred cCCceEE--EchHHHHHHHhCC-hHhHheeeecCCC-ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccC
Confidence 2333321 1222333332221 1122233332222 2345677899999999887755 45899999999999999
Q ss_pred CHHHHHHHHHHHHhhc-C-C-ceEEEEecChhhhhh-cC--eEEEEeCCE
Q 018040 284 DTATDNLIQHTLGQHF-S-D-CTVITIAHRITSVID-SD--MVLLLSYGL 327 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~-~-~-~tvi~itH~l~~~~~-~D--ri~vl~~G~ 327 (362)
|+.+...+.+.+.+.. + + .|+|++||++..... || +|++|++|+
T Consensus 162 D~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 162 DPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999998764 3 4 479999999876654 65 889999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-22 Score=210.06 Aligned_cols=199 Identities=23% Similarity=0.253 Sum_probs=164.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-c
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-G 205 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 205 (362)
..+|+|+|.-++||+.+.++||.|||||||+++++|-.+- ..|+|.+||.+.++... ++.++|++|+...++ .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3589999999999999999999999999999999998764 35799999999876654 677999999887775 5
Q ss_pred cHHhhcCcCC----------CCCHHH-----HHHHHHHcCCChHHHhccccchhhhccC-CCCCChhHHHHHHHHHHhcC
Q 018040 206 SVHNNLDPLE----------EYADEE-----IWEALDKCQLGNEVRKNEGKLESRVTEN-GENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 206 tv~enl~~~~----------~~~~~~-----~~~~l~~~~l~~~~~~~~~~l~~~~~~~-g~~LSgGqrQRv~iAral~~ 269 (362)
||+|-+++.. +.++.+ .+.+++..||+. ..||.+|.. ....|||||.||.+|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~-------~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH-------CADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh-------hccceecccccccccCcccceeeeeeeeec
Confidence 9999987521 122222 224566666653 467777654 45789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhh--hhhcCeEEEEeCCEEEEecChhHHh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITS--VIDSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~--~~~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+|+++.+||+|.|||..|.-++.+.+++.. -+.|.++.-|..+. ....|.|++|.+|+++.+|+.++++
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999999999999864 36788888887643 3449999999999999999998875
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=169.07 Aligned_cols=136 Identities=22% Similarity=0.281 Sum_probs=100.3
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE-EEcCCCCCCcccHHhhcCcC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS-IIPQDPTMFEGSVHNNLDPL 214 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~enl~~~ 214 (362)
.++.+.++.++.|+|||||||||+++++....-..+|.+.... +. +.+ ++++....|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3445556679999999999999999998776655555544310 00 011 111111100
Q ss_pred CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHH
Q 018040 215 EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNL 290 (362)
Q Consensus 215 ~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~----~p~illLDEPts~LD~~~~~~ 290 (362)
+ -+. .+||+||+||++|||+|.. +|+++|+|||++++|+.....
T Consensus 72 ----------------i-----------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 ----------------I-----------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ----------------e-----------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 000 1179999999999999986 789999999999999999999
Q ss_pred HHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeC
Q 018040 291 IQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 291 i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
+.+.+.+.. +++++|++||+.+....+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999887753 36899999999999988999999974
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-22 Score=190.04 Aligned_cols=185 Identities=25% Similarity=0.315 Sum_probs=127.7
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hc-------
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RS------- 191 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~------- 191 (362)
++..+|+.+. ..|..+- ..++|+++||+||||-||||.+++|+|.+.|.=|+- ++.+ +.++. ++
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp----~wdeVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP----SWDEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC----CHHHHHHHhhhhHHH
Confidence 3566787553 2333332 356899999999999999999999999999987754 2211 11111 11
Q ss_pred -----------CcEEEcC----CCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 192 -----------RLSIIPQ----DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 192 -----------~i~~v~Q----~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
++..=|| -|-.+.++|.|-+.-..+ .....++.++++ |+..+++...+||||
T Consensus 151 ~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--~g~~devve~l~-----------L~nvl~r~v~~LSGG 217 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--RGKFDEVVERLG-----------LENVLDRDVSELSGG 217 (591)
T ss_pred HHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh--cCcHHHHHHHhc-----------chhhhhhhhhhcCch
Confidence 1111122 122233444443321100 011223333333 445556666779999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
|-||+|||.|++++++++++|||||-||...+-...+.++++.+ +++||+|.|||..+.. +|-|.++..
T Consensus 218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 218 ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999999999999999999999999999998876 6999999999999998 999988873
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=210.11 Aligned_cols=211 Identities=19% Similarity=0.211 Sum_probs=142.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------cCCCCCccEEEECCEeCCCCCH----------HHHhc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF----------RIVEPTAGLIAIDGIDISSIGL----------HDLRS 191 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----------gl~~p~~G~I~i~g~~i~~~~~----------~~~r~ 191 (362)
=|+|++.+|+-|..++|.|-||||||||++-.+ |. +.-+--|.+|-.+|..-+. +.+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 489999999999999999999999999997554 22 2223457788777754321 12333
Q ss_pred CcEEEcC------CCCCCcccH--------------HhhcCcC------------CCCCH-----------------HHH
Q 018040 192 RLSIIPQ------DPTMFEGSV--------------HNNLDPL------------EEYAD-----------------EEI 222 (362)
Q Consensus 192 ~i~~v~Q------~~~l~~~tv--------------~enl~~~------------~~~~~-----------------~~~ 222 (362)
-.+-.|+ .+..|+..+ .-++.|. .++.. -.+
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 3332222 111221110 0001110 01111 112
Q ss_pred HHHHHHcCCChHHHhc-----cccch-hhhccCCCCCChhHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHH
Q 018040 223 WEALDKCQLGNEVRKN-----EGKLE-SRVTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQH 293 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~-----~~~l~-~~~~~~g~~LSgGqrQRv~iAral~~~---p~illLDEPts~LD~~~~~~i~~ 293 (362)
.++++.+.-.+.+.+. .-||. -.+|+...+|||||.||+-||.-|.++ +.++||||||.||++...+.+.+
T Consensus 1664 ~ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1664 EEVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 2333333211111111 01222 246888999999999999999999876 78999999999999999999999
Q ss_pred HHHhhc-CCceEEEEecChhhhhhcCeEEEEe------CCEEEEecChhHHhhcCCc
Q 018040 294 TLGQHF-SDCTVITIAHRITSVIDSDMVLLLS------YGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 294 ~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~------~G~i~~~g~~~~l~~~~~~ 343 (362)
.++++. .|.|||+|.|+++.++.||.|+-|- .|+|++.|+|+++.+.+.+
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S 1800 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDS 1800 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCC
Confidence 998864 6899999999999999999999986 4799999999999887644
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=179.53 Aligned_cols=179 Identities=25% Similarity=0.389 Sum_probs=139.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCccEEEECCEeCCCCCHHHHhcCcEEEcCC--
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--------VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD-- 199 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~-- 199 (362)
..+|+|+||+|++|++++|+|+|||||||++++|+|. |+|++|.|.+--..+ -+.+|-+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCcccc
Confidence 3589999999999999999999999999999999986 578999997643222 2345543
Q ss_pred CCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 200 PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 200 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
|.+-.-|+.|.+.-. .-+-....++|+.+|+.+.+.. -.....||-|||-|..||+++...|.+++.||-
T Consensus 465 p~f~~~tilehl~s~-tGD~~~AveILnraGlsDAvly---------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 465 PEFGEVTILEHLRSK-TGDLNAAVEILNRAGLSDAVLY---------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred cccCchhHHHHHhhc-cCchhHHHHHHHhhccchhhhh---------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 222223777766321 1122334577888888764421 122356899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh--cCeEEEEeCCEEE
Q 018040 280 TASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID--SDMVLLLSYGLIE 329 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~ 329 (362)
-|.||+.|...+...+.++. .+.|++++||+.+.... -|+++.+.-|++.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999998765 57899999999998875 6999998887654
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=190.51 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=92.9
Q ss_pred hhccCCCCCChhHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeE
Q 018040 245 RVTENGENWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 245 ~~~~~g~~LSgGqrQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri 320 (362)
.+|+....|||||.|||-||.-|.++. -++||||||.||-.+-.+.+++.|.++. +|.|||+|.|+|+.++.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 458999999999999999999999987 9999999999999999999999998864 689999999999999999999
Q ss_pred EEEe------CCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 321 LLLS------YGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 321 ~vl~------~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
+-|- .|+|++.|+|+++.+.+.+.-.+++.
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk 930 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLK 930 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHH
Confidence 9874 67999999999998865433333333
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-21 Score=173.97 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=109.3
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE-EEcCCCCCCcccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS-IIPQDPTMFEGSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~e 209 (362)
.+.+|+++++.+|++++|.||||+||||+++.++-. .+..++| |||.+...++ +.+
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la~~g~~vpa~~~~~~--~~~ 74 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMAQIGCFVPCDSADIP--IVD 74 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHHHhCCCcCcccEEEe--ccc
Confidence 589999999999999999999999999999999821 1223444 6666542211 111
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh--cCCCCEEEEeCC---CCCCC
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL--LKKSKVLVLDEA---TASVD 284 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral--~~~p~illLDEP---ts~LD 284 (362)
+++..+++.+.. ...+|.|++|+..+++++ +.+|+++||||| |+++|
T Consensus 75 --------------~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 75 --------------CILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred --------------eeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 122223332211 134799999999999999 899999999999 99999
Q ss_pred HHHHHHH-HHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 285 TATDNLI-QHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 285 ~~~~~~i-~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
+...... .+.+.+ ..++++|++||..+....||++..+++|++...++
T Consensus 127 ~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9876533 244433 24789999999644444499999999999977654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=175.22 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=63.3
Q ss_pred CCCChhHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-c---
Q 018040 251 ENWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-S--- 317 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~--- 317 (362)
..+|+||+|+++|||+|+ .+|+++||||||++||+.....+.+.+.+.. .+++++|+...+.. |
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~ 258 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRR 258 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccC
Confidence 347999999999999985 7999999999999999999999999997653 46666666665555 5
Q ss_pred CeEEEEeCCEE
Q 018040 318 DMVLLLSYGLI 328 (362)
Q Consensus 318 Dri~vl~~G~i 328 (362)
++++.+++|++
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-20 Score=167.77 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=102.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCc
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 213 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~ 213 (362)
..++++.+|++++|+||||||||||+++|++.. .+..|.... . .+..+++..|....+. ..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~~~~--~~d~i-- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFTRIG--AEDSI-- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEEEec--Ccccc--
Confidence 455667789999999999999999999999432 222332110 0 0122333322211111 01110
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 018040 214 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293 (362)
Q Consensus 214 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~ 293 (362)
.+....+|.+++| +..+.+++.+|+++||||||+++|+.....+..
T Consensus 86 ---------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 0111234666665 666677788999999999999999987776654
Q ss_pred -HHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 018040 294 -TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 294 -~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l 337 (362)
.++... .+.++|++||+.+.+..++++..++.|++...+...++
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 344433 47899999999988888999999999999888765443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-21 Score=182.16 Aligned_cols=201 Identities=20% Similarity=0.300 Sum_probs=132.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEeCCCCCHHH----
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDGIDISSIGLHD---- 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~---- 188 (362)
.|.++|.+.+-.++ ..+.+.|+.|-.|.++++|||||-||||||+-|+. +--|..=.|++..+.+..-+...
T Consensus 264 DIKiEnF~ISA~Gk--~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQGK--LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeecccc--eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 48888888877554 47899999999999999999999999999999873 22233334555444432111000
Q ss_pred H---hcCcEEEcCCCCC----Ccc--cHHhhcC-------c-CCCCCHHHHHHHHHHcCCChHHHhccccchhhhcc-CC
Q 018040 189 L---RSRLSIIPQDPTM----FEG--SVHNNLD-------P-LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE-NG 250 (362)
Q Consensus 189 ~---r~~i~~v~Q~~~l----~~~--tv~enl~-------~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~g 250 (362)
+ .++..++-.+..| -.+ |+.|-+. - +......+.++.|.-+| ++..+.+ ..
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLG-----------FskEMQ~rPt 410 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLG-----------FSKEMQERPT 410 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcC-----------CChhHhcCCc
Confidence 0 0111111111111 001 2222110 0 00111122223333222 3333333 34
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
..+|||.|-||+|||||..+|-+|.|||||++||......+-+.|..+ .+|.++||||-.++.. |..||.|++-++.
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 568999999999999999999999999999999999888888888766 4699999999999998 9999999998874
Q ss_pred E
Q 018040 330 E 330 (362)
Q Consensus 330 ~ 330 (362)
.
T Consensus 489 y 489 (807)
T KOG0066|consen 489 Y 489 (807)
T ss_pred h
Confidence 3
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-20 Score=164.02 Aligned_cols=140 Identities=19% Similarity=0.129 Sum_probs=94.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~e 209 (362)
++++|++++. |++++|+||||||||||+++|+|... +...|.++.. -.+++|...+|. .|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccchh
Confidence 4778877665 79999999999999999999987543 2235554421 135677555664 48999
Q ss_pred hcCcCCCCCHHHH---HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Q 018040 210 NLDPLEEYADEEI---WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286 (362)
Q Consensus 210 nl~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~ 286 (362)
|+.........+. .++++.++ +.+|+++|+||||+++|+.
T Consensus 79 ~l~~~~s~~~~e~~~~~~iL~~~~-------------------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 79 DLRDGISYFYAELRRLKEIVEKAK-------------------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred ccccccChHHHHHHHHHHHHHhcc-------------------------------------CCCCeEEEEecccCCCCHH
Confidence 9865332211111 11221111 1699999999999999999
Q ss_pred HHHHHH-HHHHhh-cCCceEEEEecChhhhhh---cCeEEEE
Q 018040 287 TDNLIQ-HTLGQH-FSDCTVITIAHRITSVID---SDMVLLL 323 (362)
Q Consensus 287 ~~~~i~-~~l~~~-~~~~tvi~itH~l~~~~~---~Dri~vl 323 (362)
....+. ..+... ..+.|+|++||+++.+.. .++|-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 877654 355554 347899999999987764 3455544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-19 Score=165.27 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=126.1
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCEeCCCCCHHHHhcCc--EEEcCCCCCCcccHHhhcCc
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI--AIDGIDISSIGLHDLRSRL--SIIPQDPTMFEGSVHNNLDP 213 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I--~i~g~~i~~~~~~~~r~~i--~~v~Q~~~l~~~tv~enl~~ 213 (362)
+.+.+||+++|+||+|+|||||++.+.+.+....+++ .+-...-...+..++.+.+ .+|-..... +.......
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~---~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE---PPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC---CHHHHHHH
Confidence 5788999999999999999999999999887754332 2221111113444444433 111111110 11111100
Q ss_pred CCCCCHHHHHHHHHHcC-----CChHHHhccccchhhhccCCCCCChhH--------HHHHHHHHHhcCCCCEEEEeCCC
Q 018040 214 LEEYADEEIWEALDKCQ-----LGNEVRKNEGKLESRVTENGENWSMGQ--------RQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~l~~~~~~~g~~LSgGq--------rQRv~iAral~~~p~illLDEPt 280 (362)
... .-+..+. ....| +-+.+.+++..+++..++.|..+|||+ +||+++||++.++++|.+| ||
T Consensus 88 ~~~-~~~~a~~-~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T 163 (249)
T cd01128 88 AEM-VLEKAKR-LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--AT 163 (249)
T ss_pred HHH-HHHHHHH-HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--ee
Confidence 000 0011111 11212 234567788889999999999999999 9999999999999999999 99
Q ss_pred CCCCHHHHHH-HHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 281 ASVDTATDNL-IQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 281 s~LD~~~~~~-i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+.+|+.++.. ++ +.... .+.|.|++||++.....+|.|.||+.|.+ +++++..
T Consensus 164 ~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~ 218 (249)
T cd01128 164 ALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD 218 (249)
T ss_pred heecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC
Confidence 9999765543 33 33333 56899999999999999999999999997 4555543
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=185.28 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=89.9
Q ss_pred cchhh-hccCCCCCChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh
Q 018040 241 KLESR-VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 241 ~l~~~-~~~~g~~LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
+++.. +++...+|||||+|||+|||||..+| +++||||||+|||+.....+.+.|+++. +|.|||+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 34433 57788899999999999999999986 8999999999999999999999998864 57999999999999988
Q ss_pred cCeEEEE------eCCEEEEecChhHHhhc
Q 018040 317 SDMVLLL------SYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 317 ~Dri~vl------~~G~i~~~g~~~~l~~~ 340 (362)
||+|++| ++|+|++.|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-18 Score=159.72 Aligned_cols=142 Identities=18% Similarity=0.275 Sum_probs=103.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHH
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEI 222 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 222 (362)
.-++|+||||||||||+++|+|++.|.+|+|.++|+++...+ ..++...++++||...--..++.+|.. +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k--- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------K--- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------H---
Confidence 578999999999999999999999999999999999997654 456667788999965322224443310 0
Q ss_pred HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCc
Q 018040 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC 302 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~ 302 (362)
..| ...++|+ ++|+++|+|||++ .+.+...++....|.
T Consensus 183 -------------------------------~~~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 183 -------------------------------AEG---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGV 220 (270)
T ss_pred -------------------------------HHH---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCC
Confidence 011 1334444 5999999999974 334445555445689
Q ss_pred eEEEEecChhh--h-----------hh-cCeEEEEeCCEEEEecChhHHh
Q 018040 303 TVITIAHRITS--V-----------ID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 303 tvi~itH~l~~--~-----------~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|+|++||+.+. + .. +||+++|++|+ ..|++++++
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997654 4 13 89999999887 677776654
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-18 Score=185.16 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=90.3
Q ss_pred cchhh-hccCCCCCChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh
Q 018040 241 KLESR-VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 241 ~l~~~-~~~~g~~LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
+++.. +++...+|||||+|||+|||||..+| +++||||||++||+.....+.+.|+++. +|.|||+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 34433 57778899999999999999999997 9999999999999999999999998865 48999999999999888
Q ss_pred cCeEEEE------eCCEEEEecChhHHhhc
Q 018040 317 SDMVLLL------SYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 317 ~Dri~vl------~~G~i~~~g~~~~l~~~ 340 (362)
||+|++| ++|+|+..|+++++...
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998654
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=160.03 Aligned_cols=191 Identities=23% Similarity=0.302 Sum_probs=136.2
Q ss_pred EEeCCCCCceeeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 123 VRYAPHLPLVLRGLTCTFLGG-----MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~G-----e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
+.|++.. ..+.+..+.|+.| |++..+|.||.||||++++++|.++|+.|. ++.. -.++|=|
T Consensus 343 y~Yp~m~-k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~-------lnVSykp 408 (592)
T KOG0063|consen 343 YSYPKMK-KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPV-------LNVSYKP 408 (592)
T ss_pred eccCcce-eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccc-------cceeccc
Confidence 3455443 3678899999988 478999999999999999999999998762 1111 1478888
Q ss_pred CCCC-CCcccHHhhcCc--CCCC-CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 198 QDPT-MFEGSVHNNLDP--LEEY-ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 198 Q~~~-l~~~tv~enl~~--~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|... -+.+|||.-+.- ...+ ...-+.++++-+. .+..+++...+|||||.||++||.+|=+.+++
T Consensus 409 qkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~-----------ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ-----------IENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred cccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh-----------HHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 8754 356788875521 0111 1122223333332 33344455567899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhh-cCeEEEEeCC--EEEEecChhHHh
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYG--LIEEFDSPTRLL 338 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~Dri~vl~~G--~i~~~g~~~~l~ 338 (362)
++.|||.+-||.+.+...-..+++. ..++|-.+|.||+-.... +|||+|.+.- .....-+|..++
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll 547 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLL 547 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHH
Confidence 9999999999999887776667663 357899999999988877 9999998743 233334455554
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=149.83 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=94.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE-EEcCCCCCCcccHH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS-IIPQDPTMFEGSVH 208 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~ 208 (362)
.++.+|+++++++|++++|.||||+||||+++++.++. +..++| +||-.. ...++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 35899999999999999999999999999999998873 111222 222221 112445
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~ 288 (362)
+++... .+..+ .+.++.+.+|+|++|+. .+-+++.+|+++|||||++|+|+...
T Consensus 73 d~I~~~--------------~~~~d-----------~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSR--------------LSNDD-----------SMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEe--------------cCCcc-----------ccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHH
Confidence 555211 11110 11222345799999764 55567899999999999999999765
Q ss_pred HHH-HHHHHhhc-CCceEEEEecChhhhhh
Q 018040 289 NLI-QHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 289 ~~i-~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
..+ ...++.+. .+.++|++||+.+.+..
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 444 33444432 47899999999988776
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-17 Score=150.93 Aligned_cols=154 Identities=15% Similarity=0.070 Sum_probs=98.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~e 209 (362)
.+.+|++++..+ ++++|+|||||||||+++++++..-. |. .|..+ + ..+.+++++.| +|. .++.+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p--~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---P--ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---c--cccceecceee---EeccCCchh
Confidence 588999999887 99999999999999999999875422 11 11111 1 11234565544 222 23333
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh--cCCCCEEEEeCC---CCCCC
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL--LKKSKVLVLDEA---TASVD 284 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral--~~~p~illLDEP---ts~LD 284 (362)
|+... .|.=...+..+++++ +.+|+++||||| |+++|
T Consensus 85 ~ls~g--------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD 126 (216)
T cd03284 85 DLAGG--------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYD 126 (216)
T ss_pred hhccC--------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Confidence 33211 011122233344444 469999999999 88899
Q ss_pred HHHH-HHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 018040 285 TATD-NLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 285 ~~~~-~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l 337 (362)
.... ..+.+.+.+. .++|+|++||+.+....+|++..+++|++...+..+++
T Consensus 127 ~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 127 GLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 7552 3444444332 37899999999866666888877888888776666555
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-17 Score=131.97 Aligned_cols=75 Identities=21% Similarity=0.178 Sum_probs=69.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
++|++++|++++||+++|+||||||||||++++. +|++.++|.++..++.++.++.++++||+ +|.+|+++|
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999888877777788889888 899999999
Q ss_pred cCc
Q 018040 211 LDP 213 (362)
Q Consensus 211 l~~ 213 (362)
|..
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 975
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=149.33 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=66.2
Q ss_pred CCCChhHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh---cC
Q 018040 251 ENWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID---SD 318 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~---~D 318 (362)
..+|.||+|+++||++|+ .+|+++|||||+++||+..+..+.+.+.+. +..++++||+.+.+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 368999999999999985 799999999999999999999999988653 4589999998876654 35
Q ss_pred eEEEEeCCEE
Q 018040 319 MVLLLSYGLI 328 (362)
Q Consensus 319 ri~vl~~G~i 328 (362)
+++.|++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-16 Score=140.84 Aligned_cols=169 Identities=21% Similarity=0.282 Sum_probs=99.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHH-HcCCC-CC-ccEEEECCEeCCCC------CHHHHhcCcEEEcCCCCCC-
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTL-FRIVE-PT-AGLIAIDGIDISSI------GLHDLRSRLSIIPQDPTMF- 203 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l-~gl~~-p~-~G~I~i~g~~i~~~------~~~~~r~~i~~v~Q~~~l~- 203 (362)
+...+.+.+ ..++|+|||||||||++.+| ..+-. +. +.+. .....+ ........+...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~----~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRG----SKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccc----cccccccccccccccccccccccccccccccc
Confidence 345555554 59999999999999999999 34431 11 1110 011000 0011122344444433211
Q ss_pred ---cc--cHHhhcCc---------CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh--
Q 018040 204 ---EG--SVHNNLDP---------LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL-- 267 (362)
Q Consensus 204 ---~~--tv~enl~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral-- 267 (362)
.. .+...+.. .......++.+.+....+... .||||||-+++||--|
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~ 153 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLAL 153 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence 11 11111110 112234555555554443321 6899999999998554
Q ss_pred --cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 268 --LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 268 --~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
+.+++++|||||.++||......+.+.|++..++.-+|++||+......||+.+.+.
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 457899999999999999999999999998887889999999999999999877654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-15 Score=134.31 Aligned_cols=131 Identities=20% Similarity=0.164 Sum_probs=88.9
Q ss_pred eeeeeeEEEeCC--cEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc--c
Q 018040 132 VLRGLTCTFLGG--MKTGIVGRTGSGKSTLIQTLF--RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE--G 205 (362)
Q Consensus 132 vL~~isl~i~~G--e~~~ivG~nGsGKSTLl~~l~--gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~--~ 205 (362)
+-+|+++ .++ .+++|.||||+|||||++.+. +++ +..|...... .-.++|..|...-+. .
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~ 83 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRE 83 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCcc
Confidence 4455554 444 789999999999999999998 333 4566654421 124677777543221 1
Q ss_pred cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 206 tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
++.+++ ..+ .-+-||+++|++++.+|+++|||||++|+|+
T Consensus 84 si~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 84 SVSSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred Chhhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 222221 000 2345999999999999999999999999998
Q ss_pred HHH-HHHHHHHHhhc-C---CceEEEEecChhhhhh
Q 018040 286 ATD-NLIQHTLGQHF-S---DCTVITIAHRITSVID 316 (362)
Q Consensus 286 ~~~-~~i~~~l~~~~-~---~~tvi~itH~l~~~~~ 316 (362)
... ..+...++... . +.++|++||+++.+..
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 754 44445565543 2 2489999999998776
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.6e-16 Score=136.43 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=49.4
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHhhc--CCceEEEEecChhhhhhcCe
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ-HTLGQHF--SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~l~~~~~~Dr 319 (362)
..+|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++... .+.++|++||+.+....+|+
T Consensus 60 s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 4568888874444433 3499999999999999998766654 4455443 37899999999975555764
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=141.66 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=111.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe---CCC-----CCHHHHhcCcEEEcCC--C
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID---ISS-----IGLHDLRSRLSIIPQD--P 200 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~---i~~-----~~~~~~r~~i~~v~Q~--~ 200 (362)
.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+. +.+ ++...+++.+.++.+. |
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~ 225 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP 225 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC
Confidence 489999 9999999999999999999999999999999999999996544 332 2334467778888653 2
Q ss_pred CCCc-------ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH-HHHHHHhcCCCC
Q 018040 201 TMFE-------GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL-VCLARVLLKKSK 272 (362)
Q Consensus 201 ~l~~-------~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR-v~iAral~~~p~ 272 (362)
.+.. .|+.|++ +..|.+ +--+.+.+ | .--|-|| ++++ +.+|+
T Consensus 226 ~~~r~~~~~~a~~iAEyf---------------r~~g~~--Vll~~Dsl-t---------r~A~A~rEisl~---~ge~P 275 (438)
T PRK07721 226 ALMRIKGAYTATAIAEYF---------------RDQGLN--VMLMMDSV-T---------RVAMAQREIGLA---VGEPP 275 (438)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCCc--EEEEEeCh-H---------HHHHHHHHHHHh---cCCCC
Confidence 2110 0222222 111110 00000000 0 0011111 1111 12222
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhc---CCc-----eEEEEecChhhhhhcCeEEEEeCCEEEEecChhH
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHF---SDC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~ 336 (362)
.|+|+|+.....+.+.+.+.. +|. ||++.+||++. ..||++.+|.+|+|+.+++..+
T Consensus 276 ------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 ------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 478999999999999987754 464 99999999985 4599999999999999987654
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-15 Score=164.64 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=99.2
Q ss_pred CCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH------HHHHHHHhcCCCCEEE
Q 018040 202 MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ------LVCLARVLLKKSKVLV 275 (362)
Q Consensus 202 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ------Rv~iAral~~~p~ill 275 (362)
.|+||+.+||.+....+++ ..+++.++...++..++.| ++.++.++ .||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4889999999984344444 5778888888999989888 88887765 89999999 9999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhc------CCceEEEEecChhhhhh------cCeEEEEe
Q 018040 276 LDEATASVDTATDNLIQHTLGQHF------SDCTVITIAHRITSVID------SDMVLLLS 324 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~~~~~------~Dri~vl~ 324 (362)
|||||++||+.+...+.+.|.... .+.|+|+|||+++.+.. ||+.+-+.
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999998888886541 36799999999998764 46666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-15 Score=151.91 Aligned_cols=89 Identities=20% Similarity=0.338 Sum_probs=77.3
Q ss_pred cccchhhhccCC------CCCChhHHHHHHHHHHhc----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHhhcCC
Q 018040 239 EGKLESRVTENG------ENWSMGQRQLVCLARVLL----------KKSKVLVLDEAT-ASVDTATDNLIQHTLGQHFSD 301 (362)
Q Consensus 239 ~~~l~~~~~~~g------~~LSgGqrQRv~iAral~----------~~p~illLDEPt-s~LD~~~~~~i~~~l~~~~~~ 301 (362)
+.++++.+++.| .+||||||||++|||||+ .+|+++|||||| ++||+.+...+.+.|... ++
T Consensus 449 ~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~ 527 (562)
T PHA02562 449 DEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KD 527 (562)
T ss_pred chhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CC
Confidence 445556776666 689999999999999987 599999999998 789999999999999988 78
Q ss_pred ceEEEEecChhhhhhcCeEEEEeC-CEE
Q 018040 302 CTVITIAHRITSVIDSDMVLLLSY-GLI 328 (362)
Q Consensus 302 ~tvi~itH~l~~~~~~Dri~vl~~-G~i 328 (362)
.|||+|||+.+....||++++|++ |+.
T Consensus 528 ~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 528 TNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CeEEEEECchhchhhhhcEEEEEEECCe
Confidence 899999999887777999999986 543
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-14 Score=154.16 Aligned_cols=145 Identities=15% Similarity=0.211 Sum_probs=96.9
Q ss_pred cEEEEEEEEEeCCCCCceee-----eeeEEEeCC-cEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLR-----GLTCTFLGG-MKTGIVGRTGSGKSTLIQTLFRI-VEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~-----~isl~i~~G-e~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~ 187 (362)
.+.++++.. |++. .+|+++.++ ++++|+||||+|||||+++++|. +.+..|.
T Consensus 295 ~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-------------- 353 (771)
T TIGR01069 295 KIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-------------- 353 (771)
T ss_pred CEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------------
Confidence 466766543 2343 378888887 99999999999999999999987 3343331
Q ss_pred HHhcCcEEEcCCCC-CCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 188 DLRSRLSIIPQDPT-MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~-l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+||.... .+ .+.+++. ....++ ..+.++..++|+|++|+..|+++
T Consensus 354 -------~Vpa~~~~~~--~~~d~i~--~~i~~~-----------------------~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 354 -------PIPANEHSEI--PYFEEIF--ADIGDE-----------------------QSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred -------CccCCccccc--cchhhee--eecChH-----------------------hHHhhhhhHHHHHHHHHHHHHHh
Confidence 3333321 00 0111110 000110 00111224579999999999988
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHhhc-CCceEEEEecChhhhh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLI-QHTLGQHF-SDCTVITIAHRITSVI 315 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i-~~~l~~~~-~~~tvi~itH~l~~~~ 315 (362)
+ .+|+++|||||++|+|+.....+ ...+..+. .++++|++||+.+...
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 7 78999999999999999988877 45555543 5789999999987643
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-14 Score=146.11 Aligned_cols=77 Identities=21% Similarity=0.171 Sum_probs=71.2
Q ss_pred CCCChhHHHHHHHHHHhcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCC
Q 018040 251 ENWSMGQRQLVCLARVLLKK----SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYG 326 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~----p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G 326 (362)
..|||||+||++|||+++.. |+++||||||+|||+.+...+.+.|++..+++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 36899999999999999985 69999999999999999999999999877789999999999988789999999986
Q ss_pred E
Q 018040 327 L 327 (362)
Q Consensus 327 ~ 327 (362)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 4
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-13 Score=125.09 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHhhc
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEAT-----ASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPt-----s~LD~~~~~~i~~~l~~~~ 299 (362)
|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999998753
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-14 Score=134.88 Aligned_cols=172 Identities=23% Similarity=0.268 Sum_probs=112.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE----cCCCCCCcccHHhhcCcCC-
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII----PQDPTMFEGSVHNNLDPLE- 215 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v----~Q~~~l~~~tv~enl~~~~- 215 (362)
.+|+..++||.||-||||-++.++|-.+|.-|.-- ++- +|..-++|- .|+. |..-+.+|+.-..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp--------~w~~il~~frgselq~y--ftk~le~~lk~~~k 166 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPP--------DWQEILTYFRGSELQNY--FTKILEDNLKAIIK 166 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCc--------chHHHhhhhhhHHHhhh--hhhhccccccCcCC
Confidence 57999999999999999999999999999877542 111 111122221 1111 1112223332100
Q ss_pred --------CCCHHHHHHHHHHc----CCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 216 --------EYADEEIWEALDKC----QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 216 --------~~~~~~~~~~l~~~----~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
+..+..+...++.. .....+.. ..|+..+.+...+||||+-||.+||.+.+++++++++|||.+-|
T Consensus 167 pQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~--~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 167 PQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQ--LDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHH--HHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 00000011111100 00001111 12334444555679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 284 DTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
|...+..-...++.+. .++=||+|.||++.+.. +|-|-++..
T Consensus 245 DVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred hHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 9998888888888764 57899999999999988 899988874
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=140.51 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 252 NWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~----~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
.|||||+||++||++++. +|+++|||||++|||..+...+.+.+++..++.+||+|||++..+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 479999999999999997 5899999999999999999999999998877799999999999887799999999753
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=128.09 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE
Q 018040 252 NWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
-+|+||++++++|+.|+ .+|++++||||++.||+.....+.+.+.... .++|..| +.-..+|+++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t---~~~~~~~~~~~ 337 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGT---EAPPGAALTLR 337 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcC---CCCCCCceEEE
Confidence 47999999999999998 8999999999999999999999998886432 2333333 23344999999
Q ss_pred EeCCEEEEecC
Q 018040 323 LSYGLIEEFDS 333 (362)
Q Consensus 323 l~~G~i~~~g~ 333 (362)
+++|++.-..+
T Consensus 338 ~~~~~~~~~~~ 348 (349)
T PRK14079 338 IEAGVFTPEAP 348 (349)
T ss_pred EeccEecCCCC
Confidence 99998865443
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=120.03 Aligned_cols=138 Identities=18% Similarity=0.174 Sum_probs=85.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 208 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 208 (362)
..+.+|+++.+.+|++++|.||||+||||+++++++ .+.+..|.....- .. ++++..|=..-+ ...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~----------~~~~~~~i~~~~--~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA----------TLSIFDSVLTRM--GAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce----------EEeccceEEEEe--cCc
Confidence 358999999999999999999999999999999999 6677788765421 11 233332211100 111
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~ 288 (362)
|++.. ++.+ + ..+-+|+.-.-.-+.+|+++|||||.+|.|+...
T Consensus 85 d~~~~---------------------------~~St--------F-~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQH---------------------------GMST--------F-MVELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred ccccc---------------------------ccch--------H-HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 11110 0000 0 1122233222223467999999999888886554
Q ss_pred HHH-HHHHHhhc--CCceEEEEecChhhhhh
Q 018040 289 NLI-QHTLGQHF--SDCTVITIAHRITSVID 316 (362)
Q Consensus 289 ~~i-~~~l~~~~--~~~tvi~itH~l~~~~~ 316 (362)
..+ ...++.+. .+.++|++||+.+....
T Consensus 129 ~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 129 IAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 443 33444332 36899999999887543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=118.56 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=91.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHH-HHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTL-IQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTL-l~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.+.++++...+++. +++|+++.|.|++||||||| ++.+.++.++....+++.... ++.++.+.
T Consensus 7 ~~~~~~ld~~l~gg-----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~~~- 70 (230)
T PRK08533 7 ELSRDELHKRLGGG-----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFIKQ- 70 (230)
T ss_pred EEEEeeeehhhCCC-----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHH-
Confidence 35667777666542 78899999999999999999 689998876544444443211 11111111
Q ss_pred EEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCC--hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC--
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLG--NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK-- 269 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~-- 269 (362)
++..+.. +.... +.+. .+.- ...+|+++.++-.+++.+-.
T Consensus 71 --------------------------------~~~~g~~~~~~~~~--~~l~-~~~~-~~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 71 --------------------------------MMSLGYDINKKLIS--GKLL-YIPV-YPLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred --------------------------------HHHhCCchHHHhhc--CcEE-EEEe-cccccChHHHHHHHHHHHHHHH
Confidence 1111110 00000 0000 0000 01246666555555444433
Q ss_pred --CCCEEEEeCCCCCC----CHHHHHHHHHHHHhhc-CCceEEEEecChhh--------hhh-cCeEEEEe
Q 018040 270 --KSKVLVLDEATASV----DTATDNLIQHTLGQHF-SDCTVITIAHRITS--------VID-SDMVLLLS 324 (362)
Q Consensus 270 --~p~illLDEPts~L----D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--------~~~-~Dri~vl~ 324 (362)
+|+++++||||+.+ |+...+.+.+.++... .++|+++ ||+... +.. ||-|+.|+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 69999999999999 7777778888887664 3665555 565433 233 78888887
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-13 Score=119.06 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDE--ATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDE--Pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
..+||+++-++.+++..+.+|+++++|| |+.++|+...+.+.+++ ..++++|+++|+-.....+|+|..+.+|+|
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 3489999999999999999999999999 55566655555555554 247899999999555556999999999999
Q ss_pred EEe
Q 018040 329 EEF 331 (362)
Q Consensus 329 ~~~ 331 (362)
.+.
T Consensus 154 ~~~ 156 (174)
T PRK13695 154 YEL 156 (174)
T ss_pred EEE
Confidence 876
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=135.92 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=59.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHhh-cCCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH-TLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~-~l~~~-~~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
+.+|+||+|++.|++++ .+|+++|||||++|+|+.....+.. .+... ..++++|++||+.+.... +|+..++ ++.
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~ 466 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE-NAS 466 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEE
Confidence 45699999999999999 8999999999999999988777754 44443 247899999999888776 5555443 344
Q ss_pred E
Q 018040 328 I 328 (362)
Q Consensus 328 i 328 (362)
+
T Consensus 467 ~ 467 (782)
T PRK00409 467 V 467 (782)
T ss_pred E
Confidence 4
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=143.20 Aligned_cols=81 Identities=17% Similarity=0.079 Sum_probs=72.9
Q ss_pred hccCCCCCChhHHHHHHHHHHhcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhh
Q 018040 246 VTENGENWSMGQRQLVCLARVLLK----------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~----------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 314 (362)
......+|||||++|++||+||+. +|++|||||||++||+.+...+.+.|..+. .|++|++|||+++..
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 344568899999999999999985 799999999999999999999999998764 578999999999999
Q ss_pred hh-cCeEEEEeCC
Q 018040 315 ID-SDMVLLLSYG 326 (362)
Q Consensus 315 ~~-~Dri~vl~~G 326 (362)
.. +|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 88 9999999864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=126.12 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=98.8
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 215 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 215 (362)
+++.++.|+.++|+||+|||||||+++|++++++..|.+.++. ..++.... +..+.++.+.. -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~----------~~~-- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKG----------GQG-- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCC----------CCC--
Confidence 4567889999999999999999999999999999989888753 22222111 11122211110 000
Q ss_pred CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 018040 216 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295 (362)
Q Consensus 216 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l 295 (362)
+++....-.++.+|-++|+++++|||.+ ....+.+
T Consensus 202 --------------------------------------~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 202 --------------------------------------LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred --------------------------------------cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 0000112245667888999999999996 2344556
Q ss_pred HhhcCCc-eEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 296 GQHFSDC-TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 296 ~~~~~~~-tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+....|. +++.++|..+.....||+..|..|++...|.+.+.+.
T Consensus 237 ~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 5554554 6799999999666699999999999998898888763
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=109.38 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=61.3
Q ss_pred hccCCCCCChhHHH------HHHHHHHhcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHhhc-CCceEEEEecChhh--
Q 018040 246 VTENGENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVD---TATDNLIQHTLGQHF-SDCTVITIAHRITS-- 313 (362)
Q Consensus 246 ~~~~g~~LSgGqrQ------Rv~iAral~~~p~illLDEPts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-- 313 (362)
....+..+|+|++| +...+.+...+|+++++|||++.+| ......+.+.+.... .+.|+|+++|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 34455678999998 4445555567899999999999999 767777777776643 47899999998764
Q ss_pred -------hhh-cCeEEEEe
Q 018040 314 -------VID-SDMVLLLS 324 (362)
Q Consensus 314 -------~~~-~Dri~vl~ 324 (362)
+.. ||.|+.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 555 99999998
|
A related protein is found in archaea. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=127.82 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=87.1
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEE
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~--p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+.+...+|||||.||+.||.-+-.. -=+++||||+.||-+.--.++.+.|+.++ .|.|+|+|.||.+++..||+|+=
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iID 554 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIID 554 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEe
Confidence 3566789999999999999999876 46889999999999988888889988765 58999999999999999999998
Q ss_pred Ee------CCEEEEecChhHHhhcCCc
Q 018040 323 LS------YGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 323 l~------~G~i~~~g~~~~l~~~~~~ 343 (362)
|- .|+|+..|+|+++++++.+
T Consensus 555 iGPgAG~~GGeIv~~Gtp~~i~~~~~S 581 (935)
T COG0178 555 IGPGAGEHGGEIVAEGTPEELLANPES 581 (935)
T ss_pred eCCCCCcCCCEEEEccCHHHHHhCCcc
Confidence 74 6899999999999998654
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-12 Score=137.00 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCCCCChhHHHHHHH------HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-cC--C-ceEEEEecChhhhhhcC
Q 018040 249 NGENWSMGQRQLVCL------ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH-FS--D-CTVITIAHRITSVIDSD 318 (362)
Q Consensus 249 ~g~~LSgGqrQRv~i------Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~-~~--~-~tvi~itH~l~~~~~~D 318 (362)
.+..|||||+||++| ||+++.+|++++|||||++||+.....+.+.+... .. + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 59999999999999999999999999998888643 22 3 48999999999887799
Q ss_pred eEEEEe
Q 018040 319 MVLLLS 324 (362)
Q Consensus 319 ri~vl~ 324 (362)
+|+.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-12 Score=137.05 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=66.9
Q ss_pred CCCCCChhHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEE
Q 018040 249 NGENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 249 ~g~~LSgGqrQ------Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~ 321 (362)
.+..|||||+| |+||||+++.+|+++||||||++||+.....+.+.+.... .+.|||+|||+.+....||+++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 45679999999 5666678899999999999999999999999999998754 3579999999998766699999
Q ss_pred EEeC
Q 018040 322 LLSY 325 (362)
Q Consensus 322 vl~~ 325 (362)
+|+.
T Consensus 865 ~l~~ 868 (880)
T PRK03918 865 RVSL 868 (880)
T ss_pred EEEe
Confidence 9983
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=121.16 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=116.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.++-+.++..|... ..+++++ +.+.+|++++|+|++|+|||||+++|+|..+|+.|.|.+.|+...
T Consensus 129 ~~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~----------- 195 (432)
T PRK06793 129 HAFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR----------- 195 (432)
T ss_pred CchheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----------
Confidence 346677777777543 3478875 999999999999999999999999999999999988877664321
Q ss_pred EEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc-----
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL----- 268 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~----- 268 (362)
++++.+ ...+...++. .+.+-....+-|.|+|+|++.+.+.+
T Consensus 196 ------------ev~e~~-----------~~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 196 ------------EVKDFI-----------RKELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred ------------cHHHHH-----------HHHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122221 1111111111 01111223456999999999998887
Q ss_pred --CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 269 --KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 269 --~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
.++-++++|+||...|+. +.+-..+.+.. .|.+..+.||....++++-+ .++|.|...++
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 789999999999999996 55555555543 46788888884444444443 46888876554
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-12 Score=113.33 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=52.9
Q ss_pred CCCChhHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhh
Q 018040 251 ENWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSV 314 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~ 314 (362)
..+|.|++|.+.|+.+++..+ .++++|||-++|+|...+.+.+.+....+ +.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999998888776 89999999999999999999999987665 78999999998754
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=109.90 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=82.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~ 208 (362)
++-+|++|+.++|++++|.||||+||||+++.+.+..-.. .|.- + +.+ +.+++++. .+|. ....
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-v--------pa~--~~~i~~~~---~i~~~~~~~ 83 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-V--------PAK--SMRLSLVD---RIFTRIGAR 83 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-c--------Ccc--ccEecccc---EEEEecCcc
Confidence 5889999999999999999999999999999988763221 1210 0 000 00111110 1111 1112
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~ 288 (362)
+++...... +. -|-+++.-.-..+.+|+++|||||++|+|+...
T Consensus 84 d~~~~~~St-----------------------------------F~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKGEST-----------------------------------FM-VELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccCcch-----------------------------------HH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 222111000 00 122333222223468999999999999999887
Q ss_pred HHHHHH-HHhhcC--CceEEEEecChhhhhh
Q 018040 289 NLIQHT-LGQHFS--DCTVITIAHRITSVID 316 (362)
Q Consensus 289 ~~i~~~-l~~~~~--~~tvi~itH~l~~~~~ 316 (362)
..+... ++.+.+ +.++|++||+++.+..
T Consensus 128 ~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 128 YAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 766665 444332 7899999999988765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-12 Score=139.38 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=69.3
Q ss_pred ccCCCCCChhHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE
Q 018040 247 TENGENWSMGQRQLVCLARVL----LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iAral----~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
...+..||||||||++||+++ +.+|+++||||||++||+.+...+.+.|....++.++|+|||++..+..||+++.
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHee
Confidence 346678999999999999998 4778999999999999999999999999887667899999999998877999875
Q ss_pred Ee
Q 018040 323 LS 324 (362)
Q Consensus 323 l~ 324 (362)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 54
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-12 Score=127.35 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=56.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
.+|++||+++++||+++|+|||||||||||+ .|+..|++| +|.++|.++...+..++..- -+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~L-R~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETL-DEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHH-HHHHHhh
Confidence 4899999999999999999999999999999 788888888 79999999987654443211 1888864
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=99.97 Aligned_cols=129 Identities=19% Similarity=0.095 Sum_probs=77.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 224 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 224 (362)
++.|.|++|+||||+++.+++...+..|.+.+.+.+... ... .++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~------------------~~~~~~----------- 48 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EEL------------------TERLIG----------- 48 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHH------------------HHHHhh-----------
Confidence 368999999999999999999887766666553322110 000 000000
Q ss_pred HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC----------CCHHHHHHHHHH
Q 018040 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS----------VDTATDNLIQHT 294 (362)
Q Consensus 225 ~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~----------LD~~~~~~i~~~ 294 (362)
....+.. ... ..........+.++.++++.+++...+|+++++||+++- .|....+.+.++
T Consensus 49 -~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 49 -ESLKGAL-------DNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred -hhhcccc-------ccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 0000000 000 001111112345566678899999999999999999954 444445666666
Q ss_pred HHhhc-CCceEEEEecChhhh
Q 018040 295 LGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 295 l~~~~-~~~tvi~itH~l~~~ 314 (362)
+.... .+.|+|+++|.....
T Consensus 120 ~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHhcCCceEEEEEecCCcc
Confidence 65544 478999999976443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-11 Score=126.56 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhc-CCceEEEEecChhhhh----------hcCeEEEEeCCEEEEecCh
Q 018040 268 LKKSKVLVLDEATASV-DTATDNLIQHTLGQHF-SDCTVITIAHRITSVI----------DSDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 268 ~~~p~illLDEPts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~----------~~Dri~vl~~G~i~~~g~~ 334 (362)
..+|+++++|||+.+| |+...+.+.+.++... .+.+++++||+++.+. .||++++|.+|++.+.+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 6899999999998754 5789999999998774 4999999999998766643
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=101.15 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
.|.||-=.--+.+.+ ++.-|+|||||-|+|.|.-+-.+...|+++. .|.-+||+||.+-.+.. --+|+-++.+-+.+
T Consensus 130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~~ 208 (233)
T COG3910 130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIEE 208 (233)
T ss_pred hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCccc
Confidence 499998777777776 4567999999999999999999999998875 57899999999877776 67889888876543
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.6e-11 Score=129.88 Aligned_cols=78 Identities=23% Similarity=0.167 Sum_probs=68.8
Q ss_pred cCCCCCChhHHHHHHHHHHhcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-c
Q 018040 248 ENGENWSMGQRQLVCLARVLLK--------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-S 317 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral~~--------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~ 317 (362)
....+|||||+|+++||+||+. +|++||+||||++||+.+...+++.|..+. .|+||++|||....... .
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 5678899999999999999995 899999999999999999999999998864 57999999997777666 6
Q ss_pred CeEEEEeC
Q 018040 318 DMVLLLSY 325 (362)
Q Consensus 318 Dri~vl~~ 325 (362)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 77777764
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-11 Score=132.38 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 249 NGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
++..||||||++++||++++ .+||++|||||+++||+.....+.+.|.....+.++|+|||+...+..||+++.+.
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEE
Confidence 34589999999999999998 47899999999999999999999999988776788999999998887799998776
Q ss_pred C
Q 018040 325 Y 325 (362)
Q Consensus 325 ~ 325 (362)
.
T Consensus 1151 ~ 1151 (1164)
T TIGR02169 1151 M 1151 (1164)
T ss_pred E
Confidence 4
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=104.79 Aligned_cols=118 Identities=21% Similarity=0.217 Sum_probs=73.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIW 223 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 223 (362)
.+.|+||+||||||++++|++.+++. .|.|...+.++. .. .....+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~---~~~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FV---HESKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cc---ccCccceeeecc-----------------------
Confidence 68999999999999999999888754 567665443321 10 000111121110
Q ss_pred HHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCce
Q 018040 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCT 303 (362)
Q Consensus 224 ~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~t 303 (362)
++ .....++. +++++|.++|+++++|||. |.++... .++....|.+
T Consensus 56 -----vg-----------------~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~---~l~~a~~G~~ 101 (198)
T cd01131 56 -----VG-----------------LDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRL---ALTAAETGHL 101 (198)
T ss_pred -----cC-----------------CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHH---HHHHHHcCCE
Confidence 00 00000111 4788999999999999996 6654333 3333346889
Q ss_pred EEEEecChhhhhhcCeEEEE
Q 018040 304 VITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 304 vi~itH~l~~~~~~Dri~vl 323 (362)
++.++|..+.....||++.|
T Consensus 102 v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 102 VMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred EEEEecCCcHHHHHhHHHhh
Confidence 99999998766556776554
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-09 Score=86.41 Aligned_cols=117 Identities=34% Similarity=0.332 Sum_probs=80.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHH
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADE 220 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 220 (362)
++..+.|+||+|+||||+++.++..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467899999999999999999999988654 4566655433221111100
Q ss_pred HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-------
Q 018040 221 EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH------- 293 (362)
Q Consensus 221 ~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~------- 293 (362)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 001111222357888888899999988899999999999999887766553
Q ss_pred HHHhhcCCceEEEEecC
Q 018040 294 TLGQHFSDCTVITIAHR 310 (362)
Q Consensus 294 ~l~~~~~~~tvi~itH~ 310 (362)
.......+..+|.++|.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEEeCC
Confidence 22223346788888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-10 Score=124.25 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCCCChhHHH------HHHHHHHhcCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHhhcC-C-ceEEEEecChhhhh
Q 018040 250 GENWSMGQRQ------LVCLARVLLKK-----S-KVLVLDEATASVDTATDNLIQHTLGQHFS-D-CTVITIAHRITSVI 315 (362)
Q Consensus 250 g~~LSgGqrQ------Rv~iAral~~~-----p-~illLDEPts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~~~ 315 (362)
+..||||||| |+++|++++.+ | +++||||||++||+.....+.+.|..... + .+||+|||+...+.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 4579999999 99999999864 2 67999999999999999999998887643 4 48999999999998
Q ss_pred hcCeEEEEeCC
Q 018040 316 DSDMVLLLSYG 326 (362)
Q Consensus 316 ~~Dri~vl~~G 326 (362)
.||++++|...
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 89999999754
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=98.26 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHHHHhh-cCCceEEEEecChhh-------hhh-cC
Q 018040 253 WSMGQRQLVCLARVLLK--KSKVLVLDEATASVD---TATDNLIQHTLGQH-FSDCTVITIAHRITS-------VID-SD 318 (362)
Q Consensus 253 LSgGqrQRv~iAral~~--~p~illLDEPts~LD---~~~~~~i~~~l~~~-~~~~tvi~itH~l~~-------~~~-~D 318 (362)
.|.++++.+..++.++. +|+++++||||+.+| ......+.+.++.. ..+.|+++++|.... +.. +|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 47788999999999997 899999999996544 44334444445443 357899999997654 334 67
Q ss_pred eEEEEeC
Q 018040 319 MVLLLSY 325 (362)
Q Consensus 319 ri~vl~~ 325 (362)
-++.|+.
T Consensus 181 gvI~L~~ 187 (234)
T PRK06067 181 VYLKLRA 187 (234)
T ss_pred EEEEEEe
Confidence 7777773
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-09 Score=107.05 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=69.9
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC---CEeCCCCCHHH-
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID---GIDISSIGLHD- 188 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~---g~~i~~~~~~~- 188 (362)
.+.++.++++..|..+ ..+++.++ .|.+||+++|+|+||||||||+++|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 4568999999999754 35889886 999999999999999999999999999999999999885 45554433222
Q ss_pred ---HhcCcEEEcCCC
Q 018040 189 ---LRSRLSIIPQDP 200 (362)
Q Consensus 189 ---~r~~i~~v~Q~~ 200 (362)
+++.|+||+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 235699999965
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=95.77 Aligned_cols=66 Identities=24% Similarity=0.391 Sum_probs=50.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 208 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 208 (362)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++..++.+++++.+ .++.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999985 77788 578877666666665532 355555566666
Q ss_pred hhc
Q 018040 209 NNL 211 (362)
Q Consensus 209 enl 211 (362)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 663
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-10 Score=117.07 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=93.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHH--HcCCCCCccEEEECCEeCCCCCHHHHh---cCcEEEcCCCCCCcccHHhhcCcC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGLIAIDGIDISSIGLHDLR---SRLSIIPQDPTMFEGSVHNNLDPL 214 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l--~gl~~p~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~l~~~tv~enl~~~ 214 (362)
+++|..+.|.|++|||||||..-. .|..+..+..+++.... ++++++ +.+|+-.++..- .+++...
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~-----~g~l~~~ 88 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVD-----EGKLFIL 88 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhh-----cCceEEE
Confidence 678999999999999999999765 46655455567775532 334443 335655543210 0111111
Q ss_pred CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH--HHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 018040 215 EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA--RVLLKKSKVLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 215 ~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA--ral~~~p~illLDEPts~LD~~~~~~i~ 292 (362)
...........++.+++.+.++..+ ..+|+|++|||.|+ .++...|+.. ...++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~ 147 (484)
T TIGR02655 89 DASPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIF 147 (484)
T ss_pred ecCchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHH
Confidence 0000000111222333333333322 33699999999999 6665655433 45667777
Q ss_pred HHHHhhc-CCceEEEEecChhh--------h-hh-cCeEEEEe
Q 018040 293 HTLGQHF-SDCTVITIAHRITS--------V-ID-SDMVLLLS 324 (362)
Q Consensus 293 ~~l~~~~-~~~tvi~itH~l~~--------~-~~-~Dri~vl~ 324 (362)
+.++.+. .++|+|+++|+.+. + +. ||.|+.|+
T Consensus 148 ~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 148 RLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 7777654 58999999998753 2 44 89999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-09 Score=92.85 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=42.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI 179 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~ 179 (362)
..+-+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 344456678999999999999999999999999999999999999764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-09 Score=102.25 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHHHHhcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 252 NWSMGQRQLVCLARVLLK---------KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~---------~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
.+|.||+++++||.+|+. +|+|+|||||+|+||+..++.+.+.+... +.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999999999999754 679999999987654
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=99.51 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceee-----------eeeEEEeCCcEEEE
Q 018040 80 RIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLR-----------GLTCTFLGGMKTGI 148 (362)
Q Consensus 80 ~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~-----------~isl~i~~Ge~~~i 148 (362)
...+.+|++++++.++... .++ ....+.+.|+||++.|++.. .+|+ |+++.|.+|++++|
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~------~~~--e~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNG------DDP--EKAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred ccccHhHHHHHhCCCccCC------CCc--cccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 3457899999998765321 111 12345799999999998754 6897 99999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCC
Q 018040 149 VGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 149 vG~nGsGKSTLl~~l~gl~~p 169 (362)
+||+|+|||||++.|...+..
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred ECCCCCChhHHHHHHHHhhcc
Confidence 999999999999999998754
|
Members of this family differ in the specificity of RNA binding. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.5e-08 Score=103.45 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=47.5
Q ss_pred HHHHhcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh
Q 018040 263 LARVLLKKSKVLVLDEATASV-DTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 263 iAral~~~p~illLDEPts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
|+|++..+|+++++|||+.+| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 678889999999999999999 6899999999998754 57899999999987754
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-08 Score=97.84 Aligned_cols=174 Identities=20% Similarity=0.179 Sum_probs=99.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HH-----HhcCcEEEcCCCCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HD-----LRSRLSIIPQDPTM 202 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~-----~r~~i~~v~Q~~~l 202 (362)
.+++++ +.+.+||+++|+|+||+|||||+++|+|..+|+.|.+...|..-.++.. +. +++.+.++.+...
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~- 229 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ- 229 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC-
Confidence 489999 9999999999999999999999999999999998877776654332210 00 1111222221110
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC-hhHHHHHHHHHHhcCCCCEEEEeCC--
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS-MGQRQLVCLARVLLKKSKVLVLDEA-- 279 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS-gGqrQRv~iAral~~~p~illLDEP-- 279 (362)
+. -+++..+.-.+-..+.... .|.+-.+- -.+|+ --|-|| .|+ +.+.||
T Consensus 230 ---~p-----------~~r~~~~~~a~t~AE~frd--~G~~Vll~--~DslTr~A~A~R-Eis---------l~~ge~P~ 281 (440)
T TIGR01026 230 ---SP-----------LLRLKGAYVATAIAEYFRD--QGKDVLLL--MDSVTRFAMAQR-EIG---------LAAGEPPA 281 (440)
T ss_pred ---CH-----------HHHHHHHHHHHHHHHHHHH--CCCCEEEE--EeChHHHHHHHH-HHH---------HhcCCCCc
Confidence 00 1111110000111111111 01110000 00011 112222 122 123454
Q ss_pred CCCCCHHHHHHHHHHHHhhc-CCc-------eEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 280 TASVDTATDNLIQHTLGQHF-SDC-------TVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~-~~~-------tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
+.|.|+.....+.+.+.+.. .++ ||++-+||+. .. +|++..+.+|+|+-+....+
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhh
Confidence 56899999888888887654 345 8888999983 33 89999999999998876544
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-09 Score=92.94 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=61.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEI 222 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 222 (362)
+++|+||||||||||.++|.+++ ..|.+.+-+.|--. ......+...+...+ +....+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 64 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERKNNNYD--------------HPDAFDFDLL 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhccCCCC--------------CCCcccHHHH
Confidence 48999999999999999999998 33444443333110 000000000000011 1111222333
Q ss_pred HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
.+.+..+...+ .+..+..++|.|++++..+ .+.+++++|+|+|+...++
T Consensus 65 ~~~l~~l~~~~-----------~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 65 ISHLQDLKNGK-----------SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHCCC-----------CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 33443332211 1222334568888776555 5788999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=96.12 Aligned_cols=114 Identities=23% Similarity=0.187 Sum_probs=71.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 218 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 218 (362)
..++..+.|.||+||||||+++++.+.++ +..|.|..-+.++.-. .....+++.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~e------------------ 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQRE------------------ 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEccc------------------
Confidence 35789999999999999999999999776 3467776544332100 000011111100
Q ss_pred HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 219 DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 219 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
.+ .... + ---++++||-++|+++++||+. |+++.....+ ..
T Consensus 177 ----------vg-----------------~~~~--~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa 217 (343)
T TIGR01420 177 ----------VG-----------------LDTL--S----FANALRAALREDPDVILIGEMR---DLETVELALT---AA 217 (343)
T ss_pred ----------cC-----------------CCCc--C----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HH
Confidence 00 0000 0 1224677888999999999997 8877665444 33
Q ss_pred cCCceEEEEecChhhh
Q 018040 299 FSDCTVITIAHRITSV 314 (362)
Q Consensus 299 ~~~~tvi~itH~l~~~ 314 (362)
..|.+++.+.|-.+..
T Consensus 218 ~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 218 ETGHLVFGTLHTNSAA 233 (343)
T ss_pred HcCCcEEEEEcCCCHH
Confidence 4588899999985544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.9e-09 Score=102.40 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=60.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---EECCEeCCCCCHHHH------hcCcEEEcCCCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI---AIDGIDISSIGLHDL------RSRLSIIPQDPT 201 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---~i~g~~i~~~~~~~~------r~~i~~v~Q~~~ 201 (362)
.+++++ |++.+||+++|+|+||+|||||+++|+|+.+++.+.+ -.+|.++.+...+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 489999 9999999999999999999999999999999886433 334444433222222 446999999987
Q ss_pred CCc-ccHHhhcC
Q 018040 202 MFE-GSVHNNLD 212 (362)
Q Consensus 202 l~~-~tv~enl~ 212 (362)
.+. .++.++..
T Consensus 223 ~~~rl~a~e~a~ 234 (434)
T PRK07196 223 PLMRIKATELCH 234 (434)
T ss_pred hhhhHHHHHHHH
Confidence 664 36666653
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-08 Score=91.73 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=35.3
Q ss_pred hcCCCCEEEEeCCCCC------CCHHHHHHHHHHHHhhc--CCceEEEEecCh
Q 018040 267 LLKKSKVLVLDEATAS------VDTATDNLIQHTLGQHF--SDCTVITIAHRI 311 (362)
Q Consensus 267 l~~~p~illLDEPts~------LD~~~~~~i~~~l~~~~--~~~tvi~itH~l 311 (362)
...+|+++|+| |+++ +|+.....+.+.+.+.. .++|+|+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7764 68888888888887653 478999999976
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.1e-09 Score=103.66 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=47.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
++++.++.+++|+++++|||||+||||++..|++.+.+..|.. +|+++++|+ |..++.|++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHH
Confidence 3445566677899999999999999999999999876666531 467888887 444566666
Q ss_pred C
Q 018040 212 D 212 (362)
Q Consensus 212 ~ 212 (362)
.
T Consensus 306 r 306 (484)
T PRK06995 306 R 306 (484)
T ss_pred H
Confidence 4
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.5e-08 Score=94.29 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=63.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcC
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 212 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~ 212 (362)
++.+.-.+++|++++|+|+||+|||||+++|+|...+..|+|.+++..... ...++.+.+++|+..+++.....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhhc
Confidence 555666788999999999999999999999999999999999998754322 12356799999999888776666665
Q ss_pred cC
Q 018040 213 PL 214 (362)
Q Consensus 213 ~~ 214 (362)
+.
T Consensus 262 l~ 263 (356)
T PRK01889 262 LW 263 (356)
T ss_pred cc
Confidence 43
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.3e-08 Score=86.58 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=45.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
|++++|+||||||||||+++|++...| .+.+.+..+........+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888888776655445566788888874
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-08 Score=108.62 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=54.5
Q ss_pred cCCCCCChhHHHHHH----HHHH--------hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecCh
Q 018040 248 ENGENWSMGQRQLVC----LARV--------LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRI 311 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~----iAra--------l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 311 (362)
.....||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++||+||++
T Consensus 1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 345789999999996 5755 55799999999999999999999999999877 68999999986
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=103.64 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=67.8
Q ss_pred cCCCCCChhHHHHHHHHHHhc------CC--CCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhhcC
Q 018040 248 ENGENWSMGQRQLVCLARVLL------KK--SKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVIDSD 318 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral~------~~--p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~D 318 (362)
....+|||||+=.++||-+|+ .+ -++++|||||.+||+.+...+.+.|..... +.+|++|||+-+....+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 456789999998777766654 45 699999999999999999999999988754 699999999999999999
Q ss_pred eEEEEeCC
Q 018040 319 MVLLLSYG 326 (362)
Q Consensus 319 ri~vl~~G 326 (362)
.++.++..
T Consensus 891 ~~i~V~k~ 898 (908)
T COG0419 891 VRIRVKKD 898 (908)
T ss_pred eEEEEEec
Confidence 98888753
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.8e-08 Score=95.97 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=58.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEeCCCCCHHHHh----cCcEEEcCCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDLR----SRLSIIPQDP 200 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---G~I~i~g~~i~~~~~~~~r----~~i~~v~Q~~ 200 (362)
.+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|-.+|.++.++..+.++ +++++|+...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 589999 9999999999999999999999999999999887 8899999888665444332 5678887654
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=93.11 Aligned_cols=88 Identities=26% Similarity=0.245 Sum_probs=57.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC--Ccc-EEEECCEeCCCCCHHHHhcCcEEEcCCCC-----CCcccHHhhcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAG-LIAIDGIDISSIGLHDLRSRLSIIPQDPT-----MFEGSVHNNLD 212 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~~tv~enl~ 212 (362)
++|..++|+|||||||||++++|++.+.+ ..+ .|.....++ ++..+.++...++++|... -|...++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999843 334 565544444 4555555555788888642 34556777765
Q ss_pred cCC------CC-CHHHHHHHHHHc
Q 018040 213 PLE------EY-ADEEIWEALDKC 229 (362)
Q Consensus 213 ~~~------~~-~~~~~~~~l~~~ 229 (362)
... +. +.+.+..+++.+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHH
Confidence 322 22 334455566663
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-08 Score=88.58 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=38.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEeCCCCCHHHH---hcCcEEEcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDGIDISSIGLHDL---RSRLSIIPQDP 200 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~~---r~~i~~v~Q~~ 200 (362)
-+++|+.+.|.|++|||||||...++ ....+..+.+++.... +.+++ .+.+++.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 47889999999999999999987654 2334455567776532 22332 23466666643
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-07 Score=88.00 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=111.8
Q ss_pred EEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCC
Q 018040 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199 (362)
Q Consensus 121 l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 199 (362)
+++..++.. .+.+ +-|++| ++.|+|.+=-||||||++|- |.|+--.| ||... |--+
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~--------------VVT~ 283 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREF--------------VVTD 283 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceE--------------EEEC
Confidence 556665543 3444 468999 99999999999999999997 77764434 34221 1111
Q ss_pred CCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 200 PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 200 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
+... .+| . +--+.+..+.+..|+..+|.|.||.-. .-.+=||-.-|=..|..||=..+++||+||=
T Consensus 284 ~~av--kir--------A---EDGR~V~~vDISpFI~~LP~g~dT~~F-sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDED 349 (448)
T PF09818_consen 284 PDAV--KIR--------A---EDGRSVEGVDISPFINNLPGGKDTTCF-STENASGSTSQAANIMEALEAGARLLLIDED 349 (448)
T ss_pred CCce--EEE--------e---cCCceEeCccchHHHhhCCCCCCCCcc-cccCCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence 1000 010 0 001234556788899999999987732 2345699999999999999999999999999
Q ss_pred CCCCCH-----HHHHHH----------HHHHHhh--cCCceEEEEecChh-hhhhcCeEEEEeCCEE
Q 018040 280 TASVDT-----ATDNLI----------QHTLGQH--FSDCTVITIAHRIT-SVIDSDMVLLLSYGLI 328 (362)
Q Consensus 280 ts~LD~-----~~~~~i----------~~~l~~~--~~~~tvi~itH~l~-~~~~~Dri~vl~~G~i 328 (362)
||+--- .-++.+ .+.++++ ..|.+.|+|+--.. .+..||+|++|++=+.
T Consensus 350 tsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 350 TSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred ccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 998743 223333 2223332 23655555555554 4555999999998764
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-07 Score=103.82 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=36.8
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCE
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-EPTAGLIAIDGI 179 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-~p~~G~I~i~g~ 179 (362)
+++..+.+++++|+|++|+|||||++++.+-+ ...+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 56778889999999999999999999996544 556899998763
|
syringae 6; Provisional |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=92.76 Aligned_cols=49 Identities=24% Similarity=0.179 Sum_probs=41.5
Q ss_pred HhcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHhhc-CCceEEEEecChhhh
Q 018040 266 VLLKKSKVLVLDEATASVD-TATDNLIQHTLGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 266 al~~~p~illLDEPts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 314 (362)
.+..+|.++++|||...|| +...+.+.+.++... .+..++++||+++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4556899999999999999 788888988888754 578999999998764
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-07 Score=83.70 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc-CcEEEcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS-RLSIIPQDP 200 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~-~i~~v~Q~~ 200 (362)
+||+++|+|+||||||||+++|++++.+ +.++|.++... ...|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 5999999999999999999999999887 68899877432 22222 355666654
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-07 Score=94.25 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=66.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECC---EeCCCCCHHHHh---cCcEEE-----cC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDG---IDISSIGLHDLR---SRLSII-----PQ 198 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g---~~i~~~~~~~~r---~~i~~v-----~Q 198 (362)
.+++++ |++.+||+++|+|+||+|||||+++|+|+.++ +.|.|.+.| .++.+...+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 378887 99999999999999999999999999999854 446666644 555444333333 235666 89
Q ss_pred CCCC------CcccHHhhcCcCC-C-----CCHHHHHHHHHHcCC
Q 018040 199 DPTM------FEGSVHNNLDPLE-E-----YADEEIWEALDKCQL 231 (362)
Q Consensus 199 ~~~l------~~~tv~enl~~~~-~-----~~~~~~~~~l~~~~l 231 (362)
+|.. ...++.|.+.... . .+..+..++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 8742 1125666654221 1 123456667777766
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.6e-07 Score=96.38 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHHhcC--CCCEEEEeCC---CCCCCHHH-HHHHHHHHHhhcCCceEEEEecChhhhhhcC
Q 018040 254 SMGQRQLVCLARVLLK--KSKVLVLDEA---TASVDTAT-DNLIQHTLGQHFSDCTVITIAHRITSVIDSD 318 (362)
Q Consensus 254 SgGqrQRv~iAral~~--~p~illLDEP---ts~LD~~~-~~~i~~~l~~~~~~~tvi~itH~l~~~~~~D 318 (362)
|-=+.....++++|-. ++.++||||| |+.+|... ...+.+.+.+. .+++++++||..+....++
T Consensus 668 STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 668 STFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEE 737 (854)
T ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhh
Confidence 5555666666666654 8999999999 88888543 22233333321 2589999999965544444
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.8e-08 Score=86.33 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
++|++++|+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.7e-07 Score=79.68 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-----------CCEeCCCCCHHHH-----hcCcEEEcCCCCCCcc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-----------DGIDISSIGLHDL-----RSRLSIIPQDPTMFEG 205 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~l~~~ 205 (362)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+....+.+++ .+.++.++|.+.++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 5555544444443 2347777777655543
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=90.77 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=68.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--------EEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCc
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--------LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 213 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--------~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~ 213 (362)
..+.++|+||+|+|||||++++.++..+..| -|.++|..+. .+...+. .+ ++. .+.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~--------~~-llg-~~~~~--- 239 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT--------NP-LLG-SVHDP--- 239 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh--------HH-hcC-CccHH---
Confidence 4567999999999999999999999865444 4777776542 2221111 01 111 11110
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 018040 214 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293 (362)
Q Consensus 214 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~ 293 (362)
......+.+...++.+.... ....+||| +|+||| +..||+..+..+.+
T Consensus 240 ----~~~~a~~~l~~~gl~~~~~g-----------~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 240 ----IYQGARRDLAETGVPEPKTG-----------LVTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred ----HHHHHHHHHHHcCCCchhcC-----------chhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01122334555555432222 22346888 999999 79999999999999
Q ss_pred HHHh
Q 018040 294 TLGQ 297 (362)
Q Consensus 294 ~l~~ 297 (362)
.+++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 9865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-06 Score=69.67 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc------CCceEEEEecChh
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF------SDCTVITIAHRIT 312 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~ 312 (362)
.+......+...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4555566677788999999998765 5556667777776643 4678888888654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=88.14 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=33.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE-EEECCEe
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL-IAIDGID 180 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~-I~i~g~~ 180 (362)
=+.+|+.+.|.|++|+|||||+..++.......+. +++.+++
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 48899999999999999999999887765544445 4666653
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-07 Score=92.57 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=56.9
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
++|++..|+.. .+++++++.+..|+.++++||||+|||||++.|.|+++|.+|++.+++..|.
T Consensus 187 ~~d~~~v~Gq~--~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE--QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH--HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888754 4899999999999999999999999999999999999999999999887663
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.1e-07 Score=89.91 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=55.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
.++.++++..+..+ ..+++++ +++.+||+++|+|+||+|||||+++|+|...++.|.+.+.|..
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47777888877543 3599999 9999999999999999999999999999999999988777754
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-06 Score=78.26 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh--hhh-cCeEEEEeCC
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS--VID-SDMVLLLSYG 326 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~-~Dri~vl~~G 326 (362)
.|+-+|..||.++..+|+.+..+| +-+||...+.+.+.+.+.. .+.+|++.+|.+.. +.. ||++++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478899999999999999988887 7899999999999887764 34799999998854 444 9999999876
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-07 Score=90.50 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=49.4
Q ss_pred ceeeeeeEEE---eCCcE-----EEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHHhc
Q 018040 131 LVLRGLTCTF---LGGMK-----TGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 131 ~vL~~isl~i---~~Ge~-----~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.+++++++++ ++|+. +||+|++|||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 4778888887 67776 9999999999999999999999874 588999998876544444443
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=4e-07 Score=65.98 Aligned_cols=39 Identities=36% Similarity=0.444 Sum_probs=30.8
Q ss_pred eeeeeEEEeC-CcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 018040 133 LRGLTCTFLG-GMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171 (362)
Q Consensus 133 L~~isl~i~~-Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~ 171 (362)
+++-++++.+ |+.+.|.||||||||||+.++.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3445667775 57999999999999999999987666543
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.1e-07 Score=87.66 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=48.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC------HHHHhcCcEEEcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG------LHDLRSRLSIIPQDPT 201 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~------~~~~r~~i~~v~Q~~~ 201 (362)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|..... ....+..+.+++|...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~ 178 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG 178 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCC
Confidence 568999999999999999999999999988899999887764321 1123456888888643
|
|
| >COG3044 Predicted ATPase of the ABC class [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.5e-06 Score=81.09 Aligned_cols=160 Identities=15% Similarity=0.205 Sum_probs=102.8
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 215 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 215 (362)
-+-|++| ++.|+|+|=-|||||+.+|.. .+.---| ||... +|... .+-... .+|.
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE~-------------vVTd~-~lakae-ae~g---- 292 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRER-------------VVTDV-KLAKAE-AEEG---- 292 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCceE-------------EEehh-hhhhhh-cccc----
Confidence 3568899 999999999999999999963 3322112 23211 01000 000000 0111
Q ss_pred CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH-----
Q 018040 216 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL----- 290 (362)
Q Consensus 216 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~----- 290 (362)
..+....+..+++++|.+-+|.-.-.| .=||-+.|--.|=||+=...+++++||=+|+...-....
T Consensus 293 --------r~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~ 363 (554)
T COG3044 293 --------RCVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKES 363 (554)
T ss_pred --------eeeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHh
Confidence 112233456688888877666654443 349999999999999999999999999999875432221
Q ss_pred --------HHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 291 --------IQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 291 --------i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+.+.+.+... +.++|.||--+..+.. +||+++|++-+-.
T Consensus 364 eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 364 EGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred cCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 2222333322 2688888888877665 9999999997754
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.1e-07 Score=85.23 Aligned_cols=49 Identities=33% Similarity=0.428 Sum_probs=45.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
.+++++ +.+.+||+++|+|+||+|||||+++|+|...|+.|.+..-|++
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 589999 9999999999999999999999999999999998888776644
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.1e-06 Score=83.02 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=33.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++++.++.+++|++++++||||+||||++..|++.+
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3677788889999999999999999999999998865
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.8e-07 Score=81.76 Aligned_cols=32 Identities=34% Similarity=0.463 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
..++||.||||||||||++.|.+++++.+|.+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 57999999999999999999999999999983
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.2e-06 Score=75.65 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=33.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC-CCC------CccEEEECCEe
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRI-VEP------TAGLIAIDGID 180 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p------~~G~I~i~g~~ 180 (362)
+++|+++.|.||+|||||||+..++.. ..| ..+.+++++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 678999999999999999999888633 333 36788888765
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=86.97 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=47.2
Q ss_pred HhcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHhh-cCCceEEEEecChhhhh----------hcCeEEEEeCC
Q 018040 266 VLLKKSKVLVLDEATASVD-TATDNLIQHTLGQH-FSDCTVITIAHRITSVI----------DSDMVLLLSYG 326 (362)
Q Consensus 266 al~~~p~illLDEPts~LD-~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~----------~~Dri~vl~~G 326 (362)
.+-.+|+++++|||+..|| +...+.+.+.++.. +.+.+++++||+++.+. .|+-.++|.+.
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 3445899999999999999 67788888888775 45789999999987543 35656666554
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.2e-06 Score=80.21 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=52.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC-C-----CccEE-EECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-P-----TAGLI-AIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p-----~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
=|++|+++.|.|++|||||||+..++.... | ..|.+ +||+... .+++. +..++|.+.+...++.+|+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 378899999999999999999998886554 3 45666 7887653 23332 3444565555555777887
Q ss_pred CcCCCCCHHH
Q 018040 212 DPLEEYADEE 221 (362)
Q Consensus 212 ~~~~~~~~~~ 221 (362)
.+...++.+.
T Consensus 188 ~~~~~~~~e~ 197 (337)
T PTZ00035 188 AYARAYNHEH 197 (337)
T ss_pred EEEccCCHHH
Confidence 6654444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 362 | ||||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-31 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-26 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-23 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-23 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-23 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-20 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-20 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-19 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-19 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-19 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-19 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-18 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-18 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-17 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-17 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-17 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-17 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-17 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-16 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-16 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-16 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-16 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-13 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-12 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-11 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-11 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-05 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-04 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-04 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-04 |
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 429 bits (1106), Expect = e-151
Identities = 87/265 (32%), Positives = 143/265 (53%), Gaps = 3/265 (1%)
Query: 100 VIEAS--RPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKS 157
+IE S + + WPS G++ + L +Y +L ++ + G + G++GRTGSGKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 158 TLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEY 217
TL+ R++ G I IDG+ SI L R +IPQ +F G+ NLDP +
Sbjct: 62 TLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277
+D+EIW+ D+ L + + + GKL+ + + G S G +QL+CLAR +L K+K+L+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 278 EATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337
E +A +D T +I+ TL Q F+DCTVI RI ++++ D L++ + ++DS L
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 338 LENKSSSFAQLVAEYTQRSNSSFEK 362
+ F + + +
Sbjct: 241 YHYPADRFVAGFIGSPKMNFLPVKV 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 5e-57
Identities = 73/266 (27%), Positives = 137/266 (51%), Gaps = 13/266 (4%)
Query: 81 IISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTF 140
I +E + + E V + +G ++ + YA L+ ++ T
Sbjct: 22 FIDMENMFDLL---KEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFTV 77
Query: 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200
+ G +VG +G+GKST+++ LFR + ++G I IDG DIS + LRS + ++PQD
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 201 TMFEGSVHNNLDPLEEYA-----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255
+F ++ +N+ Y ++E+ A + + + ++V E G S
Sbjct: 138 VLFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315
G++Q V +AR +LK +++LDEAT+++DT+ + IQ +L + ++ T I +AHR+++V+
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 316 DSDMVLLLSYGLIEEFDSPTRLLENK 341
++D +L++ G I E LL
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRG 279
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 9e-57
Identities = 87/260 (33%), Positives = 142/260 (54%), Gaps = 4/260 (1%)
Query: 82 ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFL 141
S +R+L+ + NE P + EA +G V ++ RY + VL G+ +
Sbjct: 311 ASAKRVLEVL---NEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVK 367
Query: 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201
G ++G TGSGKSTL+ + R+++P G + +D +D+ ++ L DLR +S +PQ+
Sbjct: 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427
Query: 202 MFEGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260
+F G++ NL E A D+EI EA Q+ + + +SRV G N+S GQ+Q
Sbjct: 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMV 320
+ +AR L+KK KVL+LD+ T+SVD T+ I L ++ CT I +I + + +D +
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 547
Query: 321 LLLSYGLIEEFDSPTRLLEN 340
L+L G + F + LLE+
Sbjct: 548 LVLHEGKVAGFGTHKELLEH 567
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 1e-56
Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 11/243 (4%)
Query: 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
++ ++ RY P P++L + + G GIVGR+GSGKSTL + + R P G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYADEEIWEALDKC 229
+ IDG D++ + LR ++ ++ QD + S+ +N+ +P + E++ A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYA---A 119
Query: 230 QLGNE---VRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
+L + + + V E G S GQRQ + +AR L+ K+L+ DEAT+++D
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 287 TDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFA 346
++++I + + TVI IAHR+++V ++D ++++ G I E LL S ++
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Query: 347 QLV 349
L
Sbjct: 240 YLY 242
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 5e-56
Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 17/314 (5%)
Query: 25 IDMLSSIIFVFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENR--- 80
I+ ++ I + + G + G F L +L + +L
Sbjct: 251 INTVTDIGPIIVIGVGAYLAISGSITV---GTLAAFVGYLELLFGP-LRRLVASFTTLTQ 306
Query: 81 -IISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCT 139
S++R+ Q + +E + QG +DI + +Y + +L+ + +
Sbjct: 307 SFASMDRVFQLI---DEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLS 363
Query: 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199
G VG +G GKSTLI + R + T+G I IDG +I LR+++ ++ QD
Sbjct: 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD 423
Query: 200 PTMFEGSVHNNL---DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256
+F +V N+ P DEE+ EA + + ++ V E G S G
Sbjct: 424 NILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 481
Query: 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID 316
Q+Q + +AR+ L +L+LDEAT+++D ++++IQ L D T + +AHR++++
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541
Query: 317 SDMVLLLSYGLIEE 330
+D ++++ G I E
Sbjct: 542 ADKIVVIENGHIVE 555
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 3e-55
Identities = 80/313 (25%), Positives = 149/313 (47%), Gaps = 16/313 (5%)
Query: 25 IDMLSSIIFVFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRI-- 81
I +++S+ F L+ + G ++ L + L N+ +
Sbjct: 255 IQLIASLALAFVLYAASFPSVMDSLTA---GTITVVFSSMIALMRP-LKSLTNVNAQFQR 310
Query: 82 --ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCT 139
+ + + + + E R + G+++ + Y LR +
Sbjct: 311 GMAACQTLFAIL---DSEQEKDEGKRV--IDRATGDLEFRNVTFTYPGREVPALRNINLK 365
Query: 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199
G +VGR+GSGKST+ + R + G I +DG D+ L LR++++++ Q+
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 200 PTMFEGSVHNN--LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257
+F +V NN EEY+ E+I EA + + K + L++ + ENG S GQ
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS 317
RQ + +AR LL+ S +L+LDEAT+++DT ++ IQ L + + T + IAHR++++ +
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA 545
Query: 318 DMVLLLSYGLIEE 330
D ++++ G+I E
Sbjct: 546 DEIVVVEDGIIVE 558
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 9e-55
Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 4/229 (1%)
Query: 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183
Y +LR ++ G +G GKST+ L R +PTAG I IDG I +
Sbjct: 10 AYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN 68
Query: 184 IGLHDLRSRLSIIPQDPTMFEGSVHNNLD--PLEEYADEEIWEALDKCQLGNEVRKNEGK 241
I L + RS++ + QD + G++ NL +Y DE++W+ LD + V +
Sbjct: 69 ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD 301
L + V E G S GQRQ + +AR L+ K+L+LDEATAS+D+ +++++Q L
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
Query: 302 CTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350
T + IAHR+++++D+D + + G I L+ +A+ V+
Sbjct: 189 RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVS 236
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 1e-54
Identities = 83/324 (25%), Positives = 146/324 (45%), Gaps = 16/324 (4%)
Query: 25 IDMLSSIIFVFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRI-- 81
I M++S+ LF + + P G + L + L ++ +
Sbjct: 255 IQMIASLALFAVLFLASVDSIRAELTP---GTFTVVFSAMFGLMRP-LKALTSVTSEFQR 310
Query: 82 --ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCT 139
+ + + M + + GEVD+ + Y L ++ +
Sbjct: 311 GMAACQTLFGLM---DLETERDNGKYE--AERVNGEVDVKDVTFTYQGKEKPALSHVSFS 365
Query: 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199
G +VGR+GSGKST+ R + +G I +DG D+ L +LR +++ Q+
Sbjct: 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 200 PTMFEGSVHNN--LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257
+F ++ NN EY E+I +A + + L++ + ENG + S GQ
Sbjct: 426 VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS 317
RQ V +AR LL+ + VL+LDEAT+++DT ++ IQ L + + TV+ IAHR++++ +
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA 545
Query: 318 DMVLLLSYGLIEEFDSPTRLLENK 341
D +L++ G I E LL
Sbjct: 546 DEILVVDEGEIIERGRHADLLAQD 569
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 2e-53
Identities = 85/313 (27%), Positives = 158/313 (50%), Gaps = 12/313 (3%)
Query: 55 LAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQG 114
A+ FG M + S + +S I++ I P + +++ +G
Sbjct: 975 SAIVFGA---MAVGQVSSFAPDYAKATVSASHIIRI--IEKTPEIDSYSTQGLKPNMLEG 1029
Query: 115 EVDIHGLQVRY--APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
V G+ Y P +P VL+GL+ G +VG +G GKST++Q L R +P AG
Sbjct: 1030 NVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYADEEIWEALDKC 229
+ +DG +I + + LR++L I+ Q+P +F+ S+ N+ D + EEI A +
Sbjct: 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEA 1148
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289
+ + K +RV + G S GQ+Q + +AR L+++ +L+LDEAT+++DT ++
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
++Q L + T I IAHR++++ ++D+++++ G ++E + +LL K + +V
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMV 1267
Query: 350 AEYTQRSNSSFEK 362
+ S
Sbjct: 1268 SVQAGAKRSYVHH 1280
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 2e-47
Identities = 70/240 (29%), Positives = 133/240 (55%), Gaps = 5/240 (2%)
Query: 113 QGEVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170
QG ++ + Y + +L+GL G +VG +G GKST +Q + R+ +P
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 171 AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP-LEEYADEEIWEALDKC 229
G+++IDG DI +I + LR + ++ Q+P +F ++ N+ E+ +EI +A+ +
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289
+ + K + ++ V E G S GQ+Q + +AR L++ K+L+LDEAT+++DT ++
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563
Query: 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
++Q L + T I IAHR+++V ++D++ G+I E + L+ + + +LV
Sbjct: 564 VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLV 622
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 8e-51
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 113 QGEVDIHGLQVRYAPHLP-LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171
++ + Y L+ + G +VG TGSGKST+ + L+R +
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE- 73
Query: 172 GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-----DEEIWEAL 226
G I I G +++ + +RS + I+PQD +F ++ N+ Y DEE+ +A
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDATDEEVIKAT 129
Query: 227 DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
QL + + K ++ V G S G+RQ + +AR LLK K+++ DEAT+S+D+
Sbjct: 130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 287 TDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENK 341
T+ L Q + + T+I IAHR++++ ++ ++LL+ G I E + LL+
Sbjct: 190 TEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 4e-49
Identities = 90/297 (30%), Positives = 147/297 (49%), Gaps = 25/297 (8%)
Query: 71 ISKLCNLENRIIS----VERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYA 126
+++L N N I ERI + + + + +GE++ + Y
Sbjct: 310 LNELSNQFNMIQMALASAERIFEIL---DLEEEKDDPDAVELR-EVRGEIEFKNVWFSYD 365
Query: 127 PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL 186
P+ L+ +T G K +VG TGSGK+T++ L R + G I +DGIDI I
Sbjct: 366 KKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-----DEEIWEALDKCQLGNEVRKNEGK 241
LRS + I+ QD +F +V NL +Y DEEI EA + ++
Sbjct: 425 SSLRSSIGIVLQDTILFSTTVKENL----KYGNPGATDEEIKEAAKLTHSDHFIKHLPEG 480
Query: 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD 301
E+ +T+NGE+ S GQRQL+ + R L K+L+LDEAT++VDT T+ IQ + +
Sbjct: 481 YETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEG 540
Query: 302 CTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENK-------SSSFAQLVAE 351
T I IAHR+ ++ ++D++++L G I E L++ + +S + +V +
Sbjct: 541 KTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGLVVEK 597
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 6e-46
Identities = 70/256 (27%), Positives = 119/256 (46%), Gaps = 14/256 (5%)
Query: 113 QGEVDIHGLQVRYAPHLP--LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170
+G V + Y P+ P VL+GLT T G T +VG GSGKST+ L + +PT
Sbjct: 14 KGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 171 AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD--PLEEYADEEIWEALDK 228
G + +DG + H L ++++ + Q+P +F S N+ EEI
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV--- 129
Query: 229 CQLGNE---VRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285
+ ++ V E G S GQRQ V LAR L++K ++L+LD AT+++D
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 286 ATDNLIQHTLGQ--HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSS 343
+Q L + ++ TV+ I +++ + +L L G + E + +L+E
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-G 248
Query: 344 SFAQLVAEYTQRSNSS 359
+ +V S+++
Sbjct: 249 CYRSMVEALAAPSDAA 264
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 8e-28
Identities = 51/285 (17%), Positives = 108/285 (37%), Gaps = 24/285 (8%)
Query: 82 ISVERILQYM--CIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCT 139
+ +E + + + + + + + P VL+ +
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199
G + G TG+GK++L+ + +EP+ G I G R+S Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 200 PTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258
+ G++ N+ + Y + + CQL ++ K K + E G S GQR
Sbjct: 108 SWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 165
Query: 259 QLVCLARVLLKKSKVLVLDEATASVDTAT-DNLIQHTLGQHFSDCTVITIAHRITSVIDS 317
+ LAR + K + + +LD +D T + + + + ++ T I + ++ + +
Sbjct: 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 225
Query: 318 DMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSFEK 362
D +L+L G + + + L + F+ + S E+
Sbjct: 226 DKILILHEGSSYFYGTFSELQNLR-PDFSSKLMGCDSFDQFSAER 269
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 7e-27
Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 18/242 (7%)
Query: 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171
+ EV + + + VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 172 GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKC 229
G I G R+S Q + G++ N+ + Y + + C
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENI--IFGVSYDEYRYRSVIKAC 107
Query: 230 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT-D 288
QL ++ K K + E G S GQR + LAR + K + + +LD +D T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 289 NLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348
+ + + + ++ T I + ++ + +D +L+L G + + + L + ++L
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 349 VA 350
+
Sbjct: 228 MG 229
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 3e-26
Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 27/254 (10%)
Query: 116 VDIHGLQVRYAPHLPL---VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
+++ + + PL L ++ G + G TGSGKSTL+Q + ++EPT+G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDPT--MFEGSVHN-------NLDPLEEYADEEIW 223
+ DG +++R + I Q P F V + N P + +
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD-PVPLVK 118
Query: 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283
+A++ L + + RV S G+++ V +A V++ + +L+LDE +
Sbjct: 119 KAMEFVGLDFD------SFKDRVP---FFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169
Query: 284 D-TATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341
D +L++ TVI I+H I +VI+ D V++L G + LE
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
Query: 342 SSSFAQLVAEYTQR 355
F +R
Sbjct: 230 DPRFFTSKMLVMRR 243
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 57/257 (22%), Positives = 105/257 (40%), Gaps = 37/257 (14%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
+ + +A P L G+T + G +VG+ G GKS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKCQL 231
+AI G ++ +PQ + S+ N+ L + + + C L
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENI--LFGCQLEEPYYRSVIQACAL 106
Query: 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
++ + + E G N S GQ+Q V LAR + + + + D+ ++VD
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA------ 160
Query: 292 QHTLGQH-FSDC----------TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340
H G+H F + T I + H ++ + D+++++S G I E S LL
Sbjct: 161 -HV-GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218
Query: 341 KSSSFAQLVAEYTQRSN 357
+FA+ + Y +
Sbjct: 219 D-GAFAEFLRTYASHHH 234
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 6e-23
Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ + L Y+ L+G+ G T I+G G GKSTL Q I++P++G I
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 176 IDGIDI--SSIGLHDLRSRLSIIPQDPT--MFEGSVHN-------NLDPLEEYADEEIWE 224
D I S G+ LR + I+ QDP +F SV+ N+ E+ + +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
AL + + + K L S GQ++ V +A VL+ + KVL+LDE TA +D
Sbjct: 127 ALKRTGIEHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 285 TATDNLIQHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341
+ I L Q T+I H I V D V ++ G + +P + K
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 4e-20
Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 40/228 (17%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ + L Y + + L G ++G+ G GKSTL+ L I P G I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTM-FEGSV----------HNNLDPLEEYADEEI-W 223
+ + +PQ + F SV H N + D ++
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283
+ALD L + ++ L S GQRQL+ +AR + + K+++LDE T+++
Sbjct: 111 QALDYLNLTHLAKREFTSL-----------SGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 284 DTATDNLIQHTLGQ--HFSDCTVITIAHRITSVID-SDMVLLLSYGLI 328
D A +++ L + TV+ H+ V+ ++ LLL+
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 4e-20
Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 35/252 (13%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ + + +L+ ++ G K + G G+GK+TL+ L T+G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 176 IDGIDISSIG--LHDLRSRLSIIPQD---PTMFEGSVHNN--------LDPLEEYADEEI 222
+ G +G +R + + V + + ++ DE
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 223 WEA---LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279
EA L + + ++ G L S G++Q V +AR L+ + +VL+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 280 TASVDTATDNLIQHTLG---QHFSDCTVITIAHRITSVIDS-DMVLLLSYGLIEEFDSPT 335
A +D + L + +I + H I + + +LLL G + +
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 336 RLL--ENKSSSF 345
+L EN S F
Sbjct: 249 DILTSENMSRFF 260
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 6e-20
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 38/195 (19%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG- 205
G G GK+TL++T+ ++P G I +G+ I+ + + ++ +P++ +
Sbjct: 39 NFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFLPEEIIVPRKI 93
Query: 206 SVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257
SV + L + + EI +AL+ ++ +++K G+L S G
Sbjct: 94 SVEDYLKAVASLYGVKVNK---NEIMDALESVEV-LDLKKKLGEL-----------SQGT 138
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVDTATD----NLIQHTLGQHFSDCTVITIAHRITS 313
+ V LA LL +++ VLD+ ++D + I L + VI + S
Sbjct: 139 IRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK---GIVIISSREELS 195
Query: 314 VIDSDMVLLLSYGLI 328
D L
Sbjct: 196 YCDV--NENLHKYST 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 5e-18
Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 43/199 (21%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
L L+ G +VG G+GKSTL+ + + G I G + + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 192 RLSIIPQDPTMFEG-SVHNNLDPLEEY--------ADEEI-WEALDKCQLGNEVRKNEGK 241
+ + Q T V Y E+ + L + K
Sbjct: 74 HRAYLSQQQTPPFATPV-------WHYLTLHQHDKTRTELLNDVAGALAL-------DDK 119
Query: 242 LESRVTENGENWSMGQRQLVCLARVLL-------KKSKVLVLDEATASVDTA----TDNL 290
L + S G+ Q V LA V+L ++L+LDE S+D A D +
Sbjct: 120 LGRSTNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175
Query: 291 IQHTLGQHFSDCTVITIAH 309
+ Q ++ +H
Sbjct: 176 LSALSQQG---LAIVMSSH 191
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-17
Identities = 46/238 (19%), Positives = 94/238 (39%), Gaps = 36/238 (15%)
Query: 116 VDIHGLQVRY--APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
+ + + + + L + G I+G GSGK+TL++ + ++ P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMF--EGSVHNNLD---PLEEYADEEIWEALDK 228
I I+G+++ +R+ + P + +V++ + L+ + E L
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 229 CQLGNEVRKNE-GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
+LG E+ + + KL S GQ LV + L + +++ LDE +VD A
Sbjct: 115 LKLGEEILRRKLYKL-----------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 288 -DNL--IQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG-LIEEFDSPTRLLEN 340
+ G+ I + H + + + G ++ S + LLE+
Sbjct: 164 RHVISRYIKEYGK-----EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 26/156 (16%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
VL F ++G G+GK+TLI+ L ++P G I +++S
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSM-----KPQ 420
Query: 192 RLSIIPQDPT--MFEGSVHNNLDPLEEYADEEIW-EALDKCQLGNEVRKNEGKLESRVTE 248
+++ +F + ++ + + + + ++ + ++ V
Sbjct: 421 KIAPKFPGTVRQLFFKKIR------GQFLNPQFQTDVVKPLRI-------DDIIDQEVQH 467
Query: 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
S G+ Q V + L + + ++DE +A +D
Sbjct: 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-13
Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 40/220 (18%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-----------LIAIDGIDISSIGLHDLRS 191
G G+VG G GKST ++ L +P G + G ++ + L
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 192 RLSIIPQD------PTMFEGSVHNNLDPLEEYADE---EIWEALDKCQLGNEVRKNEGKL 242
+ I + P +G V + L+ ++ ++ + QL N ++++ KL
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKL 222
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD-TATDNLIQHTLGQHFSD 301
S G+ Q + ++++ V + DE ++ +D N Q
Sbjct: 223 -----------SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 302 CTVITIAHRITSVID--SDMVLLL-----SYGLIEEFDSP 334
VI + H + SV+D SD V ++ YG++ S
Sbjct: 272 KYVICVEHDL-SVLDYLSDFVCIIYGVPSVYGVVTLPASV 310
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 3e-15
Identities = 31/147 (21%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG- 205
G++G G+GK+T ++ + +++P++G++ + G ++ H++R +S +P++ +
Sbjct: 45 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNM 103
Query: 206 SVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257
L E +E + A + L K++ RV +S G
Sbjct: 104 QGIEYLRFVAGFYASSSSE-IEEMVERATEIAGL-------GEKIKDRV----STYSKGM 151
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVD 284
+ + +AR L+ ++ +LDE T+ +D
Sbjct: 152 VRKLLIARALMVNPRLAILDEPTSGLD 178
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 8e-15
Identities = 39/199 (19%), Positives = 77/199 (38%), Gaps = 35/199 (17%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGS 206
GI+G G GK+T + L + G + + +S + I + +G+
Sbjct: 298 GILGPNGIGKTTFARILVGEITADEGSVTPEKQILS--------YKPQRIFPNY---DGT 346
Query: 207 VHNNLDPLEEYADEEIWEAL-DKCQLGNEVRKN---EGKLESRVTENGENWSMGQRQLVC 262
V ++Y + +AL EV K LES V + S G+ Q +
Sbjct: 347 V-------QQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND----LSGGELQKLY 395
Query: 263 LARVLLKKSKVLVLDEATASVD----TATDNLIQHTLGQHFSDCTVITIAHRITSVID-- 316
+A L K++ + VLD+ ++ +D I+ + + I H + S+ D
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKR-VTRER-KAVTFIIDHDL-SIHDYI 452
Query: 317 SDMVLLLSYGLIEEFDSPT 335
+D +++ + + +
Sbjct: 453 ADRIIVFKGEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 42/219 (19%), Positives = 90/219 (41%), Gaps = 36/219 (16%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-----------LIAIDGIDISSIGLHDLRS 191
G++G+ G GK+T+++ L + P G L G +I + +
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSN 84
Query: 192 RLSIIPQ------DPTMFEGSVHNNLDPLEEY-ADEEIWEALDKCQLGNEVRKNEGKLES 244
L I+ + +G+V+ L ++E +E+ E L+ L N K+ L
Sbjct: 85 ELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN---KDANIL-- 139
Query: 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTV 304
S G Q + +A LL+++ V + D+ ++ +D + + + + V
Sbjct: 140 ---------SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 305 ITIAHRITSVID--SDMVLLLSYGLIEEFDSPTRLLENK 341
I + H + V+D +D++ ++ YG + ++ +
Sbjct: 191 IVVDHDL-IVLDYLTDLIHII-YGESSVYGRVSKSYAAR 227
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 38/188 (20%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
L G GIVG G GK+T ++ L + EPT G + D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------- 417
Query: 192 RLSIIPQDPTM---FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKN---EGKLESR 245
++ + + +EG+V+ E + L+ E+ K +
Sbjct: 418 --TVAYKPQYIKAEYEGTVY-------ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN 468
Query: 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD----TATDNLIQHTLGQHFSD 301
V + S G+ Q V +A LL+ + + +LDE +A +D A I+H + ++ +
Sbjct: 469 VED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--E 522
Query: 302 CTVITIAH 309
T + + H
Sbjct: 523 KTALVVEH 530
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 39/205 (19%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEP------TAGLIAIDGIDISSIGLHDLRSR---L 193
GM GIVG G+GK+T ++ L + P + I + + + R + +
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176
Query: 194 SIIPQ------DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVT 247
+ + P +G V L ++E + E + + +L N + + +L
Sbjct: 177 RPVVKPQYVDLLPKAVKGKVRELLKKVDEV--GKFEEVVKELELENVLDRELHQL----- 229
Query: 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT----DNLIQHTLGQHFSDCT 303
S G+ Q V +A LL+K+ DE ++ +D +I+ +
Sbjct: 230 ------SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE---GKA 280
Query: 304 VITIAHRITSVID--SDMVLLLSYG 326
V+ + H + +V+D SD++ ++ YG
Sbjct: 281 VLVVEHDL-AVLDYLSDVIHVV-YG 303
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 35/195 (17%)
Query: 96 EPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSG 155
+ + + V L Y L G GIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 156 KSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM---FEGSVHNNLD 212
K+T ++ L + EPT G I D ++ + + +EG+V+ L
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL---------------TVAYKPQYIKADYEGTVYELL- 368
Query: 213 PLEEYADEEIWEALDKCQLGNEVRKN---EGKLESRVTENGENWSMGQRQLVCLARVLLK 269
+ L+ E+ K + V E S G+ Q V +A LL+
Sbjct: 369 ------SKIDASKLNSNFYKTELLKPLGIIDLYDREVNE----LSGGELQRVAIAATLLR 418
Query: 270 KSKVLVLDEATASVD 284
+ + +LDE +A +D
Sbjct: 419 DADIYLLDEPSAYLD 433
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 143 GMKTGIVGRTGSGKSTLIQTLFRIVEP------TAGLIAIDGIDISSIGLHDLRSR---L 193
GM GIVG G+GKST ++ L + P + I + + + + + +
Sbjct: 47 GMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106
Query: 194 SIIPQ------DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVT 247
+ + P +G V L +E E E + +L N + + L
Sbjct: 107 RPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE--EVVKALELENVLEREIQHL----- 159
Query: 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD-TATDNLIQ--HTLGQHFSDCTV 304
S G+ Q V +A LL+ + DE ++ +D N + L + +V
Sbjct: 160 ------SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE--GKSV 211
Query: 305 ITIAHRITSVID--SDMVLLLSYG 326
+ + H + +V+D SD++ ++ YG
Sbjct: 212 LVVEHDL-AVLDYLSDIIHVV-YG 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 6e-12
Identities = 64/453 (14%), Positives = 128/453 (28%), Gaps = 156/453 (34%)
Query: 22 CFHI-DMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENR 80
C + DM SI+ + II A++G F L + +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSK-----DAVSGTLRLFWT------------LLSKQEE 77
Query: 81 IIS--VERILQ------YMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV-------RY 125
++ VE +L+ I E + S + Q + + QV R
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 126 APHLPL--VLRGLTCT---FLGGMKTGIVGRTGSGKSTL--------------------- 159
P+L L L L + G+ GSGK+ +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVL-------GSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 160 --------------IQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205
+Q L ++P D + +H +++ L + +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRL------LKS 240
Query: 206 SVHNN-LDPLEEYADEEIWEALD-KCQL------GNEVRKNEGKLESRVTENGENWSMGQ 257
+ N L L + + W A + C++ + ++ + + ++
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 258 RQ-LVCLARVL------LKKSKV----LVL----------------------DEATASVD 284
+ L + L L + + L D+ T ++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 285 TATDNLIQHTLGQHFSDCTV------ITIA-------HRITSVIDSDMVLLLSYGLIEEF 331
++ + L + F +V I I S + + L Y L+E+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 332 DSPTRL------------LENKSSSFAQLVAEY 352
+ + LEN+ + +V Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 55/371 (14%), Positives = 112/371 (30%), Gaps = 103/371 (27%)
Query: 59 FG---LNLNMLQASLISKLCNLENRI--ISVER---------ILQYMCIPNEPPLVIEAS 104
G + L++ + + C ++ +I ++++ +LQ + +P +
Sbjct: 161 SGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 105 RPNCSWPSQGEVDIHGLQVR---------YAPHLPLVLR-----------GLTCTFLGGM 144
S ++ IH +Q Y L LVL L+C L +
Sbjct: 219 HS-----SNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKIL--L 270
Query: 145 KT---GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHDLRSR-LSII 196
T + + +T I + + L + + DL L+
Sbjct: 271 TTRFKQVTDFLSAATTTHI----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 197 PQDPTMFEGSVHNNLDPLEEYADEEIW---EALDKC--QLG-NEVRKNEGKL-----ESR 245
P+ ++ S+ + L + + ++ L E RK +L +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 246 VTEN--GENWSMGQRQLV------CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297
+ W + V L++K E+T S+ I L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISI-----PSIYLELKV 437
Query: 298 HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV------AE 351
+ + HR S++D Y + + FDS + F + E
Sbjct: 438 KLENEYAL---HR--SIVD-------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 352 YTQRSNSSFEK 362
+ +R + F
Sbjct: 486 HPERM-TLFRM 495
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 7e-12
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 37/221 (16%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI---GLHDLRSRLSIIPQDPTMF 203
G++G +G+GKSTLI+ + + PT G + +DG +++++ L R ++ +I Q +
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117
Query: 204 EG-SVHNNLD-PLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255
+V N+ PLE + + E L LG++ L S
Sbjct: 118 SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL-----------SG 166
Query: 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI-------QHTLGQHFSDCTVITIA 308
GQ+Q V +AR L KVL+ D+AT+++D AT I LG T++ I
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG-----LTILLIT 221
Query: 309 HRITSVIDS--DMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
H + V+ D V ++S G + E D+ + + + + AQ
Sbjct: 222 HEM-DVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 30/183 (16%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+D+H L+ + VL+G+ G ++G +GSGKST ++ L + + G I
Sbjct: 25 IDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 176 IDGIDISSIG--LHDLRSRLSIIPQD----PTMFEGSVHNN--LDPL------EEYADEE 221
IDGI++ + L+ +R + ++ Q P M +V NN L P+ E A+ +
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM---TVLNNITLAPMKVRKWPREKAEAK 139
Query: 222 IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281
E LDK L ++ L S GQ Q V +AR L + K+++ DE T+
Sbjct: 140 AMELLDKVGLKDKAHAYPDSL-----------SGGQAQRVAIARALAMEPKIMLFDEPTS 188
Query: 282 SVD 284
++D
Sbjct: 189 ALD 191
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 5e-11
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 60/236 (25%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD----PTMF 203
++G TG+GKS ++ + IV+P G + ++G DI+ + R + +PQD P +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHL- 85
Query: 204 EGSVHNNLD-PLEEYADEEIW----EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258
SV+ N+ L E E +K + + + + +L S G+R
Sbjct: 86 --SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----------SGGER 132
Query: 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNL----------IQHTLGQHFSDCTVITIA 308
Q V LAR L+ + ++L+LDE ++VD +Q ++ +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDL---KTKGVLMEELRFVQREFD-----VPILHVT 184
Query: 309 HRITSVID-------SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
H D +D V ++ G I E L K + VAE+ N
Sbjct: 185 H------DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK-NGE---VAEFLSARN 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 5e-10
Identities = 38/178 (21%), Positives = 79/178 (44%), Gaps = 36/178 (20%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
++ L V Y ++G+ G ++G G+GK+T + + +V G I
Sbjct: 8 EVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 177 DGIDISSIGLHDL-RSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNE 234
+G DI++ H + R ++++P+ +F +V+ NL +G
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL------------------MMGAY 107
Query: 235 VRKNEG--------------KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278
RK++ +L+ R+ + G S G++Q++ + R L+ + K+L++DE
Sbjct: 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-08
Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 24/178 (13%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
+L + GI G G GKSTL++ AI + +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMR-------------AIANGQVDGFPTQE-EC 495
Query: 192 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251
R + D + LD + E DK L E + + ++
Sbjct: 496 RTVYVEHDIDGTHSDT-SVLDFVFESGVGTKEAIKDK--L-IEFGFTDEMIAMPISA--- 548
Query: 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAH 309
S G + + LAR +L+ + +L+LDE T +DT + + L T ITI+H
Sbjct: 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 7e-05
Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 3/179 (1%)
Query: 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-DGIDIS 182
+Y + + + ++G G+GKSTLI L + PT+G + + I+
Sbjct: 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA 739
Query: 183 SIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKL 242
I H S + + P+ + + E + + N++ K EG
Sbjct: 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTP 799
Query: 243 ESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD 301
+ + C + SVD A + + L + S
Sbjct: 800 RRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA--WIPRGELVESHSK 856
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ + L RY H VL+G++ G I+G +GSGKST ++ + + +P+ G I
Sbjct: 7 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 176 IDGIDISSIG-------------LHDLRSRLSIIPQD----PTM------FEGSVHNNLD 212
++G +I+ + L LR+RL+++ Q M E +
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 124
Query: 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272
+ A E + L K + + +GK + S GQ+Q V +AR L +
Sbjct: 125 SKHD-ARERALKYLAKVGIDE---RAQGKYPVHL-------SGGQQQRVSIARALAMEPD 173
Query: 273 VLVLDEATASVD 284
VL+ DE T+++D
Sbjct: 174 VLLFDEPTSALD 185
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-07
Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 40/199 (20%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHD 188
+L+G++ + G I+G +GSGKSTL+ L + PT G + ++G ++ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 189 LRSRLSI---------IPQD--------PTMFEGSVHNNLDPLEEYADEEIWEALDKCQL 231
LR+R + IP+ P + G P +E A E L + L
Sbjct: 79 LRNR-KLGFVFQFHYLIPELTALENVIVPMLKMGK------PKKE-AKERGEYLLSELGL 130
Query: 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
G+++ + +L S G++Q V +AR L + +L DE T ++D+A +
Sbjct: 131 GDKLSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 292 QHTLGQ-HFSDCTVITIAH 309
+ + +++ + H
Sbjct: 180 MDIFLKINEGGTSIVMVTH 198
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 60/236 (25%)
Query: 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR-LSIIPQD----PTM 202
I+G TG+GK+ ++ + P +G I +DG D++ + ++ + Q+ P M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---HDIAFVYQNYSLFPHM 87
Query: 203 FEGSVHNNLD-PLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258
+V NL+ + + + + ++ + + +N L S G++
Sbjct: 88 ---NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL-----------SGGEQ 133
Query: 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNL----------IQHTLGQHFSDCTVITIA 308
Q V LAR L+ K+L+LDE +++D + TV+ I
Sbjct: 134 QRVALARALVTNPKILLLDEPLSALDP---RTQENAREMLSVLHKKNK-----LTVLHIT 185
Query: 309 HRITSVID-------SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
H D +D + ++ G + + P + E VA + N
Sbjct: 186 H------DQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR---VASFVGFEN 232
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 6e-07
Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 75/240 (31%)
Query: 153 GSGKSTLIQTLFRIV----EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD----PTMFE 204
GSGK+T++ R++ PT G + I G ++ + R + ++ Q+ M
Sbjct: 51 GSGKTTIL----RLIAGLERPTKGDVWIGGKRVTDLPPQK-R-NVGLVFQNYALFQHM-- 102
Query: 205 GSVHNNL-------DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257
+V++N+ ++ D + E L +L + +R S GQ
Sbjct: 103 -TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES--------YANRFPHE---LSGGQ 150
Query: 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNL----------IQHTLGQHFSDCTVITI 307
+Q V LAR L + +VL+ DE A++DT + + +G
Sbjct: 151 QQRVALARALAPRPQVLLFDEPFAAIDT---QIRRELRTFVRQVHDEMG----------- 196
Query: 308 AHRITSVI---D-------SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357
+TSV D +D VL+L G +E+F +P + E + F VA + SN
Sbjct: 197 ---VTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF---VASFIGESN 250
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 52/235 (22%)
Query: 131 LVLRGLTCTFLGGMK--------------TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
L + F G K T I+G GSGKSTLI + ++ G +
Sbjct: 8 LRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66
Query: 177 DGIDISSIGLHDLRSRLSIIP--QDPTMFEG-SV------------HNNLDPL------- 214
+ DI++ +L I+ Q P + +V + L+ L
Sbjct: 67 ENKDITNKEPAEL-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 215 -EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273
EE E+ ++ L+ KL S GQ +LV + R L+ K+
Sbjct: 126 KEEEMVEKAFKILEFL-----------KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174
Query: 274 LVLDEATASV-DTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326
+V+DE A V ++ H L T + I HR+ V++ D + ++ G
Sbjct: 175 IVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNG 229
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 52/275 (18%), Positives = 95/275 (34%), Gaps = 81/275 (29%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV----EPTA 171
+ I L + VL ++ + G I+G +G GK+TL+ R + +P +
Sbjct: 5 LHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLL----RCLAGFEQPDS 58
Query: 172 GLIAIDGIDISSIGLH---DLRSRLSIIPQD----PTMFEGSVHNNL--------DPLEE 216
G I++ G I S + R RL + Q+ P + +V+ N+ +
Sbjct: 59 GEISLSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHL---TVYRNIAYGLGNGKGRTAQ 114
Query: 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276
+ I L+ + + +L S GQ+Q LAR L ++++L
Sbjct: 115 -ERQRIEAMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILL 162
Query: 277 DEATASVDTATDNL----------IQHTLGQHFSDCTVITIAHRITSVI---D------- 316
DE +++D L G ++V D
Sbjct: 163 DEPFSALDE---QLRRQIREDMIAALRANG--------------KSAVFVSHDREEALQY 205
Query: 317 SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351
+D + ++ G I + SP L + A
Sbjct: 206 ADRIAVMKQGRILQTASPHELYRQPADLD---AAL 237
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 5e-06
Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 58/242 (23%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHD 188
L+ + G I+G +GSGKST++ + + +PT G + ID I + + L
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 189 LRSRLSI---------IPQD--------PTMFEGSVHNNLDPLEEYADEEIWEALDKCQL 231
+R I IP P +F+ + + + A E L +L
Sbjct: 80 IRRD-KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL----ECLKMAEL 134
Query: 232 GNEVRKNE-GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 290
++ +L S GQ+Q V +AR L +++ D+ T ++D+ T
Sbjct: 135 EERFANHKPNQL-----------SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 291 IQHTLGQ-HFSD-CTVITI---------AHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339
I L + + D TV+ + RI + D G +E + R +
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD---------GEVER-EEKLRGFD 233
Query: 340 NK 341
++
Sbjct: 234 DR 235
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 53/244 (21%), Positives = 86/244 (35%), Gaps = 82/244 (33%)
Query: 148 IVGRTGSGKSTLIQTLFRIV----EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD---- 199
I+G +G+GK+T + RI+ P+ G + D ++S G + P+D
Sbjct: 36 ILGPSGAGKTTFM----RIIAGLDVPSTGELYFDDRLVASNGKLIVP------PEDRKIG 85
Query: 200 ---------PTMFEGSVHNNLD-PLE--EYADEEI----WEALDKCQLGNEVRKNEGKLE 243
P + + N+ PL + + EEI E + + + +L
Sbjct: 86 MVFQTWALYPNL---TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL- 141
Query: 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE------ATASVDTATD-NLIQHTLG 296
S Q+Q V LAR L+K +L+LDE A +Q LG
Sbjct: 142 ----------SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 297 QHFSDCTVI----------TIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFA 346
T++ IA R+ + L G + + P L +N S
Sbjct: 192 -----VTLLVVSHDPADIFAIADRV--GV-------LVKGKLVQVGKPEDLYDNPVSIQ- 236
Query: 347 QLVA 350
VA
Sbjct: 237 --VA 238
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.96 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.95 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.95 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.94 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.93 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.92 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.92 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.92 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.92 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.91 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.91 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.9 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.9 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.89 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.89 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.89 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.89 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.88 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.87 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.87 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.87 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.86 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.86 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.85 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.85 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.84 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.83 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.83 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.83 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.83 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.82 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.82 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.82 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.81 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.81 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.81 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.8 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.8 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.8 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.8 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.8 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.79 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.79 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.79 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.78 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.77 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.77 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.75 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.74 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.73 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.73 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.71 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.69 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.69 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.69 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.67 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.64 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.63 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.61 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.59 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.57 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.56 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.56 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.56 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.55 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.55 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.55 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.54 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.52 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.51 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.51 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.48 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.48 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.47 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.46 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.41 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.4 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.36 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.33 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.29 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.28 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.27 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.25 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.25 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.24 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.23 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.19 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.17 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.16 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.12 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.12 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.08 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.07 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.06 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.04 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 99.02 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.98 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.97 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.95 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.91 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.85 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.72 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.71 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.71 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.7 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.69 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.68 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.67 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.66 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.62 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.62 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.59 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.58 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.58 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.56 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.55 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.48 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.42 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.41 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.4 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.38 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.35 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.3 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.3 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.28 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.26 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.16 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.14 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.13 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.13 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.13 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.07 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.06 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.01 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.01 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.0 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.98 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.96 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.94 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.94 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.92 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.89 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.89 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.87 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.85 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.83 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.8 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.79 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.76 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.72 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.71 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.7 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.67 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.66 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.63 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.58 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.58 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.56 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.48 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.48 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.48 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.46 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.46 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.46 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.46 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.46 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.45 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.44 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.42 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.42 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.4 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.38 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.36 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.33 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.32 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.3 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.28 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.26 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.25 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.24 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.24 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.12 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.11 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.11 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.1 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.08 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.99 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.97 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.96 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.96 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.95 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.95 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.94 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.91 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.9 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.9 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.9 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.88 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.86 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.86 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.84 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.84 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.83 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.82 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.79 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.78 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.77 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.75 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.74 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.74 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.73 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.73 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.71 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.7 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.64 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.62 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.62 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.59 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.56 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.55 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.55 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.53 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.53 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.5 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.5 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.49 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.49 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.46 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.46 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.46 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.45 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.44 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.39 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.38 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.38 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.37 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.37 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.35 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.34 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.34 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.33 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.33 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.31 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.31 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.3 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.3 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.29 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.29 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.28 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.27 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.27 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.26 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.26 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.25 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.24 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.24 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 96.23 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.23 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.23 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.21 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.21 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.2 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.19 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.17 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.16 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.15 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.14 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.14 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.14 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.13 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.12 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.12 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.11 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.1 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.09 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.07 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.07 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.07 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.06 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.06 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.06 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.05 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.05 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.04 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.03 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.03 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.02 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.01 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.0 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.99 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.98 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.98 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.98 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.98 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.95 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.94 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.94 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.94 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.93 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.93 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.92 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.91 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.91 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.91 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.9 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.9 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.9 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.89 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.88 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.88 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.87 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.87 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.85 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.84 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.84 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.83 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.82 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.82 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.81 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.81 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.8 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.8 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.8 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.79 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.78 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.78 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.76 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.75 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.75 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.74 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.73 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.73 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.73 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.73 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.73 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.72 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.72 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.72 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.72 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.72 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.71 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.71 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.71 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.68 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.68 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.68 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.67 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.67 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.67 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.65 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.64 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.63 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.63 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.62 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.62 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.61 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.6 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.6 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.58 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.57 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.56 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.56 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.56 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.55 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.54 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.52 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.52 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.51 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 95.48 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.47 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.45 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.43 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.42 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.42 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.38 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.36 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.34 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.32 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.31 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.28 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.28 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.26 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.26 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.25 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.25 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.24 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.21 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.2 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.19 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.18 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.18 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.18 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.16 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.16 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.13 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.13 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.08 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.07 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.03 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.97 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.93 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.93 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 94.91 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.87 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.77 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.72 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.71 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.71 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.64 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.51 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 94.46 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.44 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.43 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.42 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.41 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.4 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.4 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.34 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.24 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.19 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 94.09 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.07 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 94.06 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.05 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 94.02 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.97 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 93.87 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 93.84 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 93.83 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 93.8 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-70 Score=608.18 Aligned_cols=303 Identities=25% Similarity=0.335 Sum_probs=257.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCC
Q 018040 48 VDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAP 127 (362)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~ 127 (362)
+.+..+..++.+......++..+...+..++..+.+++|+.++++.+++.+. ...+...||..+.|+|+||+|+|++
T Consensus 1012 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~ 1088 (1321)
T 4f4c_A 1012 MQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPE 1088 (1321)
T ss_dssp SCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCC
Confidence 3444333333333222334445566778899999999999999987655321 1223345677889999999999975
Q ss_pred C-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCccc
Q 018040 128 H-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGS 206 (362)
Q Consensus 128 ~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t 206 (362)
+ ..+||+|+||+|++||++|||||||||||||+++|+|+++|++|+|.|||+|+++++.+++|++|+||||+|.+|++|
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1168 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS 1168 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEE
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCcc
Confidence 4 336999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcC---CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 207 VHNNLDPL---EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 207 v~enl~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
++|||.++ .++++++++++++.+++++++..+|+||||.++|+|.+||||||||+||||||+++|+|||||||||+|
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 99999765 357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|+++++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|+|+|+||+++ ++.|++|++.+..
T Consensus 1249 D~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp TSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C------------
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHh
Confidence 999999999999998899999999999999999999999999999999999999997 6789999986643
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-67 Score=581.20 Aligned_cols=309 Identities=23% Similarity=0.352 Sum_probs=280.2
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..|.++++.+..++.|...+..++..+...+..++++.++++|+.++++.+++.+... .......+..+.|+++||
T Consensus 344 ~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~I~~~nv 421 (1321)
T 4f4c_A 344 WVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSS--KAGRKDMKIKGDITVENV 421 (1321)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSS--SCCCCCCCCCCCEEEEEE
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--cccccCCCCCCcEEEEEe
Confidence 346788999988888888888888888888999999999999999999998765432111 111222344678999999
Q ss_pred EEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 122 QVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 122 ~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+.+|++||||+|+|
T Consensus 422 sF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 422 HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp EECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred eeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence 9999753 357999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 201 TMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 201 ~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
++|++|++|||.++. ..++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||++++|+|||||||
T Consensus 502 ~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~ 581 (1321)
T 4f4c_A 502 ALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 581 (1321)
T ss_dssp CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred eeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecc
Confidence 999999999999875 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 280 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
||+||+++++.+++.|.+..+++|+|+||||++++..||+|+||++|+|+|.|+|+||+++ ++.|++++..+.
T Consensus 582 tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 582 TSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999998899999999999999999999999999999999999999987 678999887543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-66 Score=534.53 Aligned_cols=308 Identities=27% Similarity=0.412 Sum_probs=275.1
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..+.++++.+..++.|...+..++..+...+..++++..+++|+.++++.+++... .......++..+.|+++||+
T Consensus 272 v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~ 348 (587)
T 3qf4_A 272 VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE---ADNALALPNVEGSVSFENVE 348 (587)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC---CTTCBCCSCCCCCEEEEEEE
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC---CCCccccCCCCCcEEEEEEE
Confidence 346778888888888888888888888888899999999999999999986654221 11111112345679999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++|+||||+|.+
T Consensus 349 ~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp ECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC
T ss_pred EEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC
Confidence 99976556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.+++.+++..+|.|+++.++++|.+||||||||++|||||+++|++||||||||
T Consensus 429 f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts 508 (587)
T 3qf4_A 429 FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508 (587)
T ss_dssp CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCT
T ss_pred cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999998764 467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
+||+++++.+++.+++..+++|+|+||||++.+..||||++|++|+|++.|+|+|++++ ++.|++++..+..
T Consensus 509 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 509 SVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREIYESQFG 580 (587)
T ss_dssp TSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHhc
Confidence 99999999999999988789999999999999988999999999999999999999987 5678888876643
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-65 Score=529.29 Aligned_cols=338 Identities=26% Similarity=0.387 Sum_probs=288.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 9 RPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERI 87 (362)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl 87 (362)
+..+.......|.....+++..+..++++++. ..+..|.++++.+..++.+...+..++..+...+..++++..+++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri 318 (582)
T 3b5x_A 239 QQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555554433333322 23346788989888888888888999999999999999999999999
Q ss_pred HHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 88 LQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++.+++.+. .. ...++..+.++++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|++
T Consensus 319 ~~~l~~~~~~~~----~~-~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 319 FGLMDLETERDN----GK-YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred HHHHcCCCcCCC----CC-CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999986554211 10 1112234679999999999753346999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhh
Q 018040 168 EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESR 245 (362)
Q Consensus 168 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~ 245 (362)
+|++|+|.+||+++.+.+.+++|++++||||+|.+|++|++||+.+.. ..++++++++++.++++++++++|+|++|.
T Consensus 394 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~ 473 (582)
T 3b5x_A 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV 473 (582)
T ss_pred CCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccch
Confidence 999999999999999888888999999999999999999999998754 466888999999999999999999999999
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++++|.+||||||||++|||||+++|++||||||||+||+.+++.+.+.+++..+++|+|+||||++.+..||||++|++
T Consensus 474 ~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDE 553 (582)
T ss_pred hcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999987778999999999999988999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
|++++.|++++++++ .+.|++++..+
T Consensus 554 G~i~~~g~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 554 GEIIERGRHADLLAQ-DGAYAQLHRIQ 579 (582)
T ss_pred CEEEEECCHHHHHhC-CcHHHHHHHHh
Confidence 999999999999876 56788888765
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-65 Score=530.60 Aligned_cols=339 Identities=24% Similarity=0.357 Sum_probs=289.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 8 SRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFII-SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVER 86 (362)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~R 86 (362)
.+..+.......|.....+++..+..++++++.. .+..|.++++.+..++.|...+..++..+...+..++++..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b60_A 238 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556665666655544433333322 234577888888888888888888999999999999999999999
Q ss_pred HHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 87 ILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.++++.+++.+. . ....++..+.++++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 318 i~~~l~~~~~~~~----~-~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 318 LFAILDSEQEKDE----G-KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp HHHHHHSCCSCCC----C-CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred HHHHHcCCCCccC----C-CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 9999987654221 1 0111223467999999999975324699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchh
Q 018040 167 VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLES 244 (362)
Q Consensus 167 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~ 244 (362)
++|++|+|.+||+++.+.+.+++|++++||||+|.+|++|++||+.+.. ..++++++++++.++++++++++|+|++|
T Consensus 393 ~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 393 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred cCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccc
Confidence 9999999999999999988889999999999999999999999998754 46788899999999999999999999999
Q ss_pred hhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 245 ~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
.++++|.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++..+++|+|+||||++.+..||||++|+
T Consensus 473 ~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 552 (582)
T 3b60_A 473 IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 552 (582)
T ss_dssp BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEE
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999998777999999999999998899999999
Q ss_pred CCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 325 YGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 325 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
+|++++.|++++++++ ++.|++++..+
T Consensus 553 ~G~i~~~g~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 553 DGIIVERGTHSELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp TTEEEEEECHHHHHHH-TSSHHHHHHHT
T ss_pred CCEEEEecCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999999886 56788887654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-66 Score=531.82 Aligned_cols=303 Identities=25% Similarity=0.368 Sum_probs=272.6
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..+.++++.+..++.|...+..++..+...+..++++..+++|+.++++.+++... .......++..+.++++||+|
T Consensus 271 ~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~~ 347 (578)
T 4a82_A 271 ISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKN---GVGAQPIEIKQGRIDIDHVSF 347 (578)
T ss_dssp HHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCC---CTTCCCCCCCSCCEEEEEEEE
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCccccCCCCCeEEEEEEEE
Confidence 45778888888888888888888888999999999999999999999987654321 111111123456799999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.+++|+++|||||+|.+|
T Consensus 348 ~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 427 (578)
T 4a82_A 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427 (578)
T ss_dssp CSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC
T ss_pred EcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccC
Confidence 99865557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
++|++||+.+.. ..++++++++++.+++.++++.+|.|++|.++++|.+||||||||++|||||+++|+++|||||||+
T Consensus 428 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~ 507 (578)
T 4a82_A 428 SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507 (578)
T ss_dssp SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 999999998754 4567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
||+.+++.+.+.+++..+++|+|+||||++.+..||||++|++|++++.|+|+|++++ ++.|++++.
T Consensus 508 LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~~ 574 (578)
T 4a82_A 508 LDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYS 574 (578)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999988788999999999999988999999999999999999999987 567877764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-67 Score=497.03 Aligned_cols=276 Identities=26% Similarity=0.427 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCC
Q 018040 74 LCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTG 153 (362)
Q Consensus 74 ~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nG 153 (362)
+..++.++++++|++++++.+++.... ......++..+.|+++||+|+|++. .++|+||||+|++||++||+||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSC
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCC
Confidence 446777888999999998654332110 0011112234679999999999754 469999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCC
Q 018040 154 SGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLG 232 (362)
Q Consensus 154 sGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~ 232 (362)
||||||+++|+|+++|++|+|.++|+++..++...+|++||||||++.+|++||+||+.+.. ...+++++++++.+++.
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999998764 35678899999999999
Q ss_pred hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh
Q 018040 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312 (362)
Q Consensus 233 ~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 312 (362)
+++..+|.++++.++++|.+|||||||||+|||||+++|+|||||||||+||+.+++.+++.|++..+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877899999999999
Q ss_pred hhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 313 SVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 313 ~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
.+..||||++|++|+|++.|+++++++. .+.|.+++..+..
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 9999999999999999999999999987 5789998876654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-66 Score=536.48 Aligned_cols=307 Identities=28% Similarity=0.420 Sum_probs=275.8
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..+.++++.+..++.|...+..++..+...+..++++..+++|+.++++.+++.+. ......++..+.|+++||
T Consensus 285 l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~~~~i~~~~v 360 (598)
T 3qf4_B 285 LALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIEFKNV 360 (598)
T ss_dssp HGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCCCeEEEEEE
Confidence 3456778888888888888888888888999999999999999999999987654321 111112344568999999
Q ss_pred EEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 122 ~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++++||||+|.
T Consensus 361 ~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 361 WFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439 (598)
T ss_dssp ECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC
T ss_pred EEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc
Confidence 9999754 359999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
+|++|++||+.+.. ..++++++++++.++++++++.+|.|++|.++++|.+||||||||++|||||+++|++|||||||
T Consensus 440 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt 519 (598)
T 3qf4_B 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519 (598)
T ss_dssp CCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999999998754 35677889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|+||+.+++.+.+.+++..+++|+|+||||++.+..||||++|++|+|++.|+|+|++++ ++.|++++..+..
T Consensus 520 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999999999988789999999999999988999999999999999999999986 5789898877654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-61 Score=535.64 Aligned_cols=305 Identities=23% Similarity=0.347 Sum_probs=264.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+.++++.+..++.+...+..++..+...+..++.+..+++|+.++++.+++.+...... ....+..+.|+++||+|+
T Consensus 319 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~~v~~~ 396 (1284)
T 3g5u_A 319 SKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSG--HKPDNIQGNLEFKNIHFS 396 (1284)
T ss_dssp HSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSC--CCCTTCCCCEEEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccC--CCCCCCCCeEEEEEEEEE
Confidence 455565555444444445555666777788899999999999999998655422111111 111233568999999999
Q ss_pred eCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 125 YAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 125 y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+++..++.+++|++||||||+|++|
T Consensus 397 y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 476 (1284)
T 3g5u_A 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476 (1284)
T ss_dssp CSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCC
T ss_pred cCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccC
Confidence 9754 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
++|++||+.+.. ..++++++++++.+++.+++..+|.+++|.++++|.+|||||||||+|||||+++|+|||||||||+
T Consensus 477 ~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~ 556 (1284)
T 3g5u_A 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556 (1284)
T ss_dssp SSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCS
T ss_pred CccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 999999998754 4678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||+++++.+++.++...+++|+|+||||++++..||+|++|++|+|++.|+|++++++ .+.|.+++...
T Consensus 557 LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 625 (1284)
T 3g5u_A 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQ 625 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHh
Confidence 9999999999999887789999999999999999999999999999999999999987 56777776543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-60 Score=438.48 Aligned_cols=238 Identities=29% Similarity=0.455 Sum_probs=217.8
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++||+++|++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 46999999999942224699999999999999999999999999999999999999999999999999888777788889
Q ss_pred EEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
+||||++.+|+.|++||+.+.. ...++++.++++.+++.++++++|.++++.+++++.+|||||||||+|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999889999998753 345677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
+|||||||++||+.+++.+.+.|++..+++|||+|||+++.+..||||++|++|++++.|+++++++.+.+.|.+++..
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 9999999999999999999999988766899999999999987799999999999999999999987756778777654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-60 Score=528.06 Aligned_cols=308 Identities=25% Similarity=0.382 Sum_probs=263.0
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+.++.+.+..++.+......++..+...+..+..+..+++|+.++++.+++..... ......++..+.++++||+|+
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~ 1039 (1284)
T 3g5u_A 962 QQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS--TQGLKPNMLEGNVQFSGVVFN 1039 (1284)
T ss_dssp SSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCC--SSCCCTTTTSCCEEEEEEEBC
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc--cccccccCCCCcEEEEEEEEE
Confidence 445555444444444444444455555555567888999999999998665432111 111122344578999999999
Q ss_pred eCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 125 YAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 125 y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++.+.+|++|+||||+|.+|
T Consensus 1040 y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 1119 (1284)
T 3g5u_A 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119 (1284)
T ss_dssp CSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC
T ss_pred CCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccc
Confidence 9753 236999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 204 EGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 204 ~~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
++|++||+.+.. ..++++++++++.+++++++.++|.+++|.++++|.+|||||||||+|||||+++|+||||||||
T Consensus 1120 ~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpT 1199 (1284)
T 3g5u_A 1120 DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1199 (1284)
T ss_dssp SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCS
T ss_pred cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999999998653 35788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhhc
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQR 355 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 355 (362)
|+||+.+++.+++.+++..+++|+|+||||++++..||||+||++|+|++.|+|++++++ ++.|++++..+...
T Consensus 1200 s~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp SSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 999999999999999887789999999999999988999999999999999999999987 67899999876543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=453.30 Aligned_cols=238 Identities=36% Similarity=0.646 Sum_probs=221.8
Q ss_pred CCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH
Q 018040 109 SWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 109 ~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~ 188 (362)
.|+..+.|+++||+|+|++...++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+...
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 466677899999999996444569999999999999999999999999999999999998 8999999999999999888
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
+|++|+||||++.+|+.|+++|+.+.....+++++++++.+++.+..++.|.++++.+++.+.+|||||||||+|||||+
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999876666788899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHH
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 347 (362)
++|++||||||||+||+.++..+.+.|++...++|+|+|||+++.+..||||++|++|+|++.|+++++++++...|..
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 9999999999999999999999999998877789999999999888779999999999999999999999987766644
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-58 Score=427.95 Aligned_cols=237 Identities=29% Similarity=0.460 Sum_probs=214.9
Q ss_pred ccEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 114 GEVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3599999999997532 3599999999999999999999999999999999999987 8999999999987777778889
Q ss_pred cEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
|+||||++.+|+.|++||+.+.. ...++++.++++.+++.+.+..++.++++.+++++.+|||||||||+|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999889999997643 23466778889999999988889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
++|||||||++||+.+++.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999987678999999999999877999999999999999999999876 4567777665
Q ss_pred H
Q 018040 352 Y 352 (362)
Q Consensus 352 ~ 352 (362)
.
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-59 Score=430.56 Aligned_cols=233 Identities=31% Similarity=0.530 Sum_probs=211.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|+++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999532 359999999999999999999999999999999999999999999999999987666667888999
Q ss_pred EcCCCCCCcccHHhhcCcC--CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 196 IPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|||++.+|+.|++||+.+. ....++++.++++.+++.+.++++|.++++.+++++.+|||||||||+|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999989999999875 23456778899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|||||||++||+.+++.+.+.|++..+++|||++||+++.+..||||++|++|++++.|+++++++. ...|.+++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 9999999999999999999999886678999999999998877999999999999999999999875 345555553
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-58 Score=430.20 Aligned_cols=238 Identities=28% Similarity=0.400 Sum_probs=211.9
Q ss_pred ccEEEEEEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 114 GEVDIHGLQVRYAP-HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
+.|+++||+++|++ ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 12359999999999999999999999999999999999999999999999999987777777888
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCC-CCH-HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEE-YAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|+||||++.+|+.|++||+.+... ... +++.++++..++.+.+..++.++++.+++++.+|||||||||+|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998899999976432 222 556667777888888888888899999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
|++|||||||++||+.+++.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|+++++++. ...|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHH
Confidence 999999999999999999999999988753 7999999999999878999999999999999999999876 4678777
Q ss_pred HHHH
Q 018040 349 VAEY 352 (362)
Q Consensus 349 ~~~~ 352 (362)
+...
T Consensus 254 ~~~~ 257 (271)
T 2ixe_A 254 VEAL 257 (271)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 6544
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=404.89 Aligned_cols=221 Identities=23% Similarity=0.331 Sum_probs=195.0
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.++++|++++|++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999964334699999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
+|+||++.+|+.|++||+.+..........++++.+++.+.++.++.+.++.+++++.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998999999987544444456667788888888888888888889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 274 LVLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
|||||||++||+.+++.+.+.+ .+..+++|||++||+++.+..||+|++|++|++++.|+++++.+.. ..|.++
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~-~~~~~~ 226 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQ-PDFSSK 226 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcC-hHHHHH
Confidence 9999999999999999999974 5555578999999999988779999999999999999999997652 345443
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-56 Score=429.61 Aligned_cols=226 Identities=25% Similarity=0.374 Sum_probs=195.0
Q ss_pred cccEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH--
Q 018040 113 QGEVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-- 188 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-- 188 (362)
...|+++||+++|+.+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 34699999999996432 35899999999999999999999999999999999999999999999999998887654
Q ss_pred -HhcCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 -LRSRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 -~r~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|++||||||++.+|+. ||+||+.+. .... .+++.++++.+++.+. .+.++.+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-----------TTCCTTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHH
Confidence 47789999999998875 999999652 1122 3456677888776543 34456678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
||+|||||+.+|++||||||||+||+.+++.+++.|+++. .|+|||+|||+++.+.. ||||++|++|+|++.|++++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999998864 38999999999999987 99999999999999999999
Q ss_pred HhhcCCcHHHHHH
Q 018040 337 LLENKSSSFAQLV 349 (362)
Q Consensus 337 l~~~~~~~~~~~~ 349 (362)
++.++...+.+.+
T Consensus 251 v~~~p~~~~~~~~ 263 (366)
T 3tui_C 251 VFSHPKTPLAQKF 263 (366)
T ss_dssp HHSSCCSHHHHHH
T ss_pred HHhCCCcHHHHHH
Confidence 9988766665443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-56 Score=407.43 Aligned_cols=224 Identities=24% Similarity=0.392 Sum_probs=197.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 4899999999974334699999999999999999999999999999999999999999999998 399
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
||||++.++..|++||+.+......+...++++.+++.+.+...+.++++.+++++.+|||||||||+|||||+++|++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999999875443344556677778887777777777888889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---hhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTLG---QHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
||||||++||+.+++.+.+.+. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. ...|.+++..
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 228 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRT 228 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHH
Confidence 9999999999999999999984 33457999999999998877999999999999999999999876 4567776654
Q ss_pred H
Q 018040 352 Y 352 (362)
Q Consensus 352 ~ 352 (362)
+
T Consensus 229 ~ 229 (237)
T 2cbz_A 229 Y 229 (237)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=413.92 Aligned_cols=214 Identities=28% Similarity=0.392 Sum_probs=184.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~ 192 (362)
.|+++||+++|++. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 59999999999754 359999999999999999999999999999999999999999999999999842 223457889
Q ss_pred cEEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
||||||+| .+|..||++|+.+.. ... .+++.++++.+++.+..+ +.+.+|||||||||+|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHHH
Confidence 99999997 467789999996521 122 345667788887755433 3445689999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||+.+|++|||||||++||+.+++.+.+.++++. +++|||+|||+++.+.. ||||++|++|++++.|++++++.+
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 38999999999999987 999999999999999999999765
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-55 Score=402.12 Aligned_cols=213 Identities=22% Similarity=0.311 Sum_probs=179.7
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL---- 189 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~---- 189 (362)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 358999999999999999999999999999999999999999999999999988876543
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcC---C---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPL---E---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~---~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
|++||||||++.+|+. |++||+.+. . ... .+++.++++.+++.+.. .++.+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 3469999999999876 999998541 1 122 23456677777765421 2344567899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||+|||||+++|++|||||||++||+.++..+.+.+++.. + ++|||+|||+++.+..||||++|++|++++.+++++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999999998864 3 899999999999765599999999999999998877
Q ss_pred Hh
Q 018040 337 LL 338 (362)
Q Consensus 337 l~ 338 (362)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-54 Score=417.85 Aligned_cols=221 Identities=23% Similarity=0.291 Sum_probs=188.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC--CHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI--GLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--~~~~~r~~ 192 (362)
.|+++|++++|++. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .....+++
T Consensus 4 ~l~i~~ls~~y~~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECCE--EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 58999999999753 599999999999999999999999999999999999999999999999998321 12234678
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCC---C----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEE---Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
||||||++.+|+. ||+||+.+... . ..+++.++++.+++.+..++ ++.+|||||||||+||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR-----------YPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-----------CGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999965 99999976421 1 13456778888877654443 4456799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+.+|++||||||||+||+..+..+.+.+.+. ..+.|+|+||||++++.. ||||++|++|+|++.|++++++.++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 9999999999999999999999999999877654 358999999999999987 9999999999999999999999887
Q ss_pred CcHHHHH
Q 018040 342 SSSFAQL 348 (362)
Q Consensus 342 ~~~~~~~ 348 (362)
...|...
T Consensus 231 ~~~~~a~ 237 (359)
T 3fvq_A 231 ADLDAAL 237 (359)
T ss_dssp SCHHHHH
T ss_pred ccHHHHH
Confidence 6555443
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-54 Score=402.94 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=187.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~~ 192 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ......+|++
T Consensus 24 ~l~i~~l~~~y~~~--~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECCE--EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 59999999999653 5999999999999999999999999999999999999999999999999985 2334556778
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
|+||||++.+|+. |++||+.+. .... .+++.++++.+++.+.. ++.+.+|||||||||+|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHH
Confidence 9999999998876 999999652 1122 23466778887775443 33455689999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++++++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998864 48999999999999987 9999999999999999999998765
Q ss_pred CcHH
Q 018040 342 SSSF 345 (362)
Q Consensus 342 ~~~~ 345 (362)
...+
T Consensus 251 ~~~~ 254 (263)
T 2olj_A 251 QHER 254 (263)
T ss_dssp CSHH
T ss_pred ccHH
Confidence 4433
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-54 Score=397.66 Aligned_cols=214 Identities=20% Similarity=0.356 Sum_probs=183.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ ++++
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 359999999999999999999999999999999999999999999999999987766554 4569
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC--CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE--EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+|+||++.+|+. |++||+.+.. ... .+.+.++++.++ +++...++++.+||||||||++||||
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP----------RLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH----------HHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc----------cHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 999999999876 9999997532 111 122333444331 24445667788899999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+++|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999998864 58999999999998876 999999999999999999998753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=420.46 Aligned_cols=219 Identities=20% Similarity=0.290 Sum_probs=191.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.||
T Consensus 3 ~l~~~~l~~~yg~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECCE--EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 48999999999754 599999999999999999999999999999999999999999999999999877654 46799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+. ||+||+.+.. ... .+++.++++.+++.+..+ +++.+|||||||||+||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHHH
Confidence 99999999975 9999997631 122 345677788887755433 4445679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+..+..+.+.|+++. + +.|+|+||||++++.. ||||++|++|+|++.|++++++..+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 999999999999999999999999999998864 3 8999999999999987 999999999999999999999988776
Q ss_pred HHHHH
Q 018040 344 SFAQL 348 (362)
Q Consensus 344 ~~~~~ 348 (362)
.|...
T Consensus 228 ~~v~~ 232 (381)
T 3rlf_A 228 RFVAG 232 (381)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=403.16 Aligned_cols=214 Identities=21% Similarity=0.265 Sum_probs=189.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 10 ~~l~~~~l~~~~~~~--~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQ--ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred ceEEEEeEEEEeCCe--eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 369999999999754 699999999999999999999999999999999999999999999999999988888888889
Q ss_pred EEEcCCCCCC-cccHHhhcCcCC-----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPLE-----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+|++|++.++ +.|++||+.+.. ....+++.++++.+++.+..++ .+.+|||||||||+|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999999874 569999996532 1234567788888887654333 3345899999999999999
Q ss_pred cC------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 268 LK------KSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 268 ~~------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++ +|++|||||||+|||+.++..+.+.|+++. + ++|||+||||++.+.. ||||++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 999999999999999999999999998864 3 5799999999999987 9999999999999999999987
Q ss_pred hc
Q 018040 339 EN 340 (362)
Q Consensus 339 ~~ 340 (362)
+.
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 54
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=401.61 Aligned_cols=218 Identities=27% Similarity=0.382 Sum_probs=187.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----------C
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----------I 184 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----------~ 184 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~~l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCE--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 59999999999753 59999999999999999999999999999999999999999999999999851 3
Q ss_pred CH---HHHhcCcEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChH-HHhccccchhhhccCCC
Q 018040 185 GL---HDLRSRLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNE-VRKNEGKLESRVTENGE 251 (362)
Q Consensus 185 ~~---~~~r~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~-~~~~~~~l~~~~~~~g~ 251 (362)
+. ..+|+++|||||++.+|+. |++||+.+. .... .+++.++++.+++.+. .++ .+.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-----------YPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-----------CGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-----------Ccc
Confidence 33 3456789999999988876 999999652 1122 2456778888888665 443 344
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 579999999999999999999999999999999999999999998764 48999999999999986 9999999999999
Q ss_pred EecChhHHhhcCCcHH
Q 018040 330 EFDSPTRLLENKSSSF 345 (362)
Q Consensus 330 ~~g~~~~l~~~~~~~~ 345 (362)
+.|+++++++++...+
T Consensus 233 ~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 233 EEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEECHHHHHHSCCSHH
T ss_pred EeCCHHHHHhCcchHH
Confidence 9999999987654443
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=396.89 Aligned_cols=214 Identities=22% Similarity=0.403 Sum_probs=186.2
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+.|+++||+++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++
T Consensus 13 ~~~l~i~~l~~~y~~~--~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCeEEEEEEEEEECCE--EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 4579999999999643 69999999999999999999999999999999999999999999999999865 44567888
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|||+||++.+|+. |++||+.+.. ... .+++.++++.+++.+..+ +++.+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999998876 9999996531 112 235667788887755433 33456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+++|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. |||+++|++|++++.|+++++.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999998864 57999999999999987 999999999999999999998754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-53 Score=411.74 Aligned_cols=217 Identities=20% Similarity=0.347 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 48999999999753 599999999999999999999999999999999999999999999999999876643 57899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+. |++||+.+... .. ++++.++++.+++.+..++ .+.+|||||||||+||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999875 99999976422 11 2457778888887654444 345679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+.+++.+.+.|++.. .+.|+|+||||++.+.. ||||++|++|+|++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 999999999999999999999999999998764 37899999999999876 999999999999999999999987665
Q ss_pred HHH
Q 018040 344 SFA 346 (362)
Q Consensus 344 ~~~ 346 (362)
.|.
T Consensus 228 ~~~ 230 (359)
T 2yyz_A 228 MFV 230 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=398.07 Aligned_cols=209 Identities=23% Similarity=0.259 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 193 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.+
T Consensus 7 ~l~i~~l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECCE--eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 59999999999753 599999999999999999999999999999999999999999999999999776543 356789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC-----C-----------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE-----E-----------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~-----~-----------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
+||||++.+|+ .|++||+.+.. . .. .+++.++++.+++.+. .++.+.+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-----------hCCCchh
Confidence 99999998886 59999996531 1 11 2345666777766443 3444566
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||||+|||||+++|++|||||||++||+.+++.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999998864 48999999999999876 99999999999999
Q ss_pred ecChhH
Q 018040 331 FDSPTR 336 (362)
Q Consensus 331 ~g~~~~ 336 (362)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999998
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-53 Score=411.29 Aligned_cols=217 Identities=25% Similarity=0.399 Sum_probs=188.8
Q ss_pred ccEEEEEEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 114 GEVDIHGLQVRY-APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y-~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
..|+++|++++| ++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++
T Consensus 13 ~~l~~~~l~~~y~g~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGA--RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTST--TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 469999999999 543 59999999999999999999999999999999999999999999999999976553 4678
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
||||||++.+|+. ||+||+.+.. ... ++++.++++.+++.+..++ .+.+|||||||||+||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR-----------FPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHH
Confidence 9999999999875 9999997531 112 3456778888887654443 3456799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+.+|++||||||||+||+.+++.+.+.|++.. .+.|+|+||||++.+.. ||||++|++|+|++.|+++++++++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998764 27999999999999887 9999999999999999999999876
Q ss_pred CcHH
Q 018040 342 SSSF 345 (362)
Q Consensus 342 ~~~~ 345 (362)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 5554
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-53 Score=388.89 Aligned_cols=206 Identities=20% Similarity=0.245 Sum_probs=177.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR- 190 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r- 190 (362)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..+ +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 5899999999975 36999999999999999999999999999999999999999999999999998766543 33
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++|+||||++.+|+. |++||+.+.. ... .+++.++++.+++.+.. +..+.+|||||||||+
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 679999999988864 9999996521 111 34566777877765433 3344568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
|||||+.+|++|||||||++||+.+++.+.+.+++.. +++|||++||+++.+..||+|++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998864 5899999999999885599999999999999885
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-53 Score=411.56 Aligned_cols=219 Identities=19% Similarity=0.285 Sum_probs=188.3
Q ss_pred cEEEEEEEEEeCCCCCc--eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHH
Q 018040 115 EVDIHGLQVRYAPHLPL--VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~--vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~ 189 (362)
.|+++|++++|++. + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....
T Consensus 3 ~l~i~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCE--eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 48999999999653 5 999999999999999999999999999999999999999999999999986511 2234
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+++||||||++.+|+. ||+||+.+... .. .+++.++++.+++.+..++ .+.+|||||||||
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHH
Confidence 6789999999999975 99999976321 22 3456778888887654443 3456799999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+|||||+.+|++||||||||+||+.++..+.+.|++.. .++|+|+||||++.+.. ||||++|++|+|++.|++++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998764 37999999999999887 9999999999999999999999
Q ss_pred hcCCcHHH
Q 018040 339 ENKSSSFA 346 (362)
Q Consensus 339 ~~~~~~~~ 346 (362)
+++...|.
T Consensus 230 ~~p~~~~~ 237 (353)
T 1oxx_K 230 DNPVSIQV 237 (353)
T ss_dssp HSCSSHHH
T ss_pred hCcccHHH
Confidence 87655543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-53 Score=411.79 Aligned_cols=217 Identities=22% Similarity=0.337 Sum_probs=188.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSS--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 48999999999653 599999999999999999999999999999999999999999999999999876643 56899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+. ||+||+.+.. ... .+++.++++.+++.+..++ .+.+|||||||||+||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999975 9999997531 122 3456778888887654433 345679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+.++..+.+.|++.. .+.|+|+||||++.+.. ||||++|++|+|++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 227 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 999999999999999999999999999998864 27999999999999876 999999999999999999999987665
Q ss_pred HHH
Q 018040 344 SFA 346 (362)
Q Consensus 344 ~~~ 346 (362)
.|.
T Consensus 228 ~~~ 230 (362)
T 2it1_A 228 KFV 230 (362)
T ss_dssp HHH
T ss_pred hHH
Confidence 553
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-53 Score=410.50 Aligned_cols=217 Identities=22% Similarity=0.336 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||
T Consensus 11 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 59999999999753 599999999999999999999999999999999999999999999999999876643 57899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+. ||+||+.+... .. .+++.++++.+++.+. .++++.+|||||||||+||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999999865 99999976422 22 2356677887776543 344556789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+.+++.+.+.|+++. + +.|+|+||||++.+.. ||||++|++|+|++.|++++++.++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 999999999999999999999999999998764 2 7899999999999876 999999999999999999999987665
Q ss_pred HHH
Q 018040 344 SFA 346 (362)
Q Consensus 344 ~~~ 346 (362)
.|.
T Consensus 236 ~~~ 238 (372)
T 1v43_A 236 VFV 238 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-53 Score=393.98 Aligned_cols=213 Identities=23% Similarity=0.292 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeC-CCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 018040 115 EVDIHGLQVRYA-PHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~-~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.++++|++++|+ ++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 389999999997 221 3599999999999999999999999999999999999999999999999988532 5678
Q ss_pred CcEEEcCCC--CCCcccHHhhcCcCC------CCCHHHHHHHHHHcCCC--hHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 192 RLSIIPQDP--TMFEGSVHNNLDPLE------EYADEEIWEALDKCQLG--NEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 192 ~i~~v~Q~~--~l~~~tv~enl~~~~------~~~~~~~~~~l~~~~l~--~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+|+||||++ .++..|++||+.+.. ....+++.++++.+++. +..++. +.+|||||||||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~~~LSgGq~qRv 147 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV-----------PFFLSGGEKRRV 147 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCC-----------GGGSCHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCC-----------hhhCCHHHHHHH
Confidence 899999996 456679999996532 12246678889999887 554443 345799999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+|||||+++|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++++
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998864 58999999999999987 99999999999999999999976
Q ss_pred cC
Q 018040 340 NK 341 (362)
Q Consensus 340 ~~ 341 (362)
.+
T Consensus 228 ~~ 229 (266)
T 2yz2_A 228 KY 229 (266)
T ss_dssp HS
T ss_pred Cc
Confidence 53
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-53 Score=406.89 Aligned_cols=214 Identities=22% Similarity=0.341 Sum_probs=187.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++ . +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++|||
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999964 3 9999999999999999999999999999999999999999999999999976553 4678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|||++.+|+. ||+||+.+.. ...++++.++++.+++.+..++ .+.+|||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999975 9999997531 1122677888888887654443 3456799999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
|++||||||||+||+.+++.+.+.|++.. .+.|+|+||||++.+.. ||||++|++|++++.|+++++++++...|
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99999999999999999999999998864 37999999999999877 99999999999999999999998765545
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-53 Score=389.50 Aligned_cols=208 Identities=25% Similarity=0.328 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++ +|+|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++|||
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999963 69999999999 999999999999999999999999999999999999986533 34678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCCC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+||++.+|+. |++||+.+.... ..+++.++++.+++.+.. ++.+.+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 9999998876 999999764321 134566677777765433 33445689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
+|++|||||||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||||++|++|++++.|+++++++++
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998864 37999999999999876 9999999999999999999998764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-53 Score=398.42 Aligned_cols=214 Identities=20% Similarity=0.234 Sum_probs=183.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRS 191 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~ 191 (362)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 20 ~~l~~~~l~~~y~~~--~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred ceEEEEeEEEEECCE--EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 359999999999753 5999999999999999999999999999999999999999999999999987 666677888
Q ss_pred CcEEEcCCCCC-Ccc--cHHhhcCcCCC--------CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 192 RLSIIPQDPTM-FEG--SVHNNLDPLEE--------YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 192 ~i~~v~Q~~~l-~~~--tv~enl~~~~~--------~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
+|+||||++.+ +.. |++||+.+... .. .+++.++++.+++.+.. ++++.+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHH
Confidence 99999999864 443 99999975321 11 23456677777765433 33455689999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceE--EEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTV--ITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tv--i~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||+|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|| |+|||+++.+.. ||||++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999998764 37899 999999999876 99999999999999999
Q ss_pred hhHHhhc
Q 018040 334 PTRLLEN 340 (362)
Q Consensus 334 ~~~l~~~ 340 (362)
++++.++
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998653
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=409.95 Aligned_cols=216 Identities=19% Similarity=0.318 Sum_probs=187.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC------CCHHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS------IGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~------~~~~~ 188 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+.
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 48999999999653 59999999999999999999999999999999999999999999999999865 443
Q ss_pred HhcCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
.+++||||||++.+|+ .|++||+.+.. ... .+++.++++.+++.+..+ +.+.+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHHH
Confidence 3578999999999986 49999997631 122 245667788887755443 3445689999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+|||||+.+|++||||||||+||+.+++.+.+.|++.. .+.|+|+||||++.+.. ||||++|++|++++.|+++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764 37899999999999887 999999999999999999999
Q ss_pred hhcCCcHH
Q 018040 338 LENKSSSF 345 (362)
Q Consensus 338 ~~~~~~~~ 345 (362)
++++...|
T Consensus 228 ~~~p~~~~ 235 (372)
T 1g29_1 228 YDKPANTF 235 (372)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 98766555
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-52 Score=384.29 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+...++++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4899999986 3899999999999999999999999999999999999999 99999999998777777888899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC--CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
|+||++.+|.. |++||+.+... ...+++.++++.+++.+..+ +.+.+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999988865 99999976421 13667788888888765433 344568999999999999999999
Q ss_pred C-------EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 272 K-------VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 272 ~-------illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+ +|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998864 58999999999999976 99999999999999999999865
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-52 Score=385.64 Aligned_cols=209 Identities=20% Similarity=0.238 Sum_probs=173.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-hc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r~ 191 (362)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 4899999999975 3699999999999999999999999999999999999 88999999999999987776554 45
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC----C--CC----HHHHHHHHHHcCCC-hHHHhccccchhhhccCCCC-CChhHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE----E--YA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTENGEN-WSMGQR 258 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~----~--~~----~~~~~~~l~~~~l~-~~~~~~~~~l~~~~~~~g~~-LSgGqr 258 (362)
.++|+||++.+|+. |+++|+.+.. . .. .+++.++++.+++. +. ......+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-----------LSRYLNEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-----------GGSBTTCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-----------hcCCcccCCCHHHH
Confidence 69999999998875 9999986421 1 11 23456677777663 22 2333455 899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEecChh
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g~~~ 335 (362)
||++|||||+++|++|||||||++||+.+++.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999998874 47999999999999886 4999999999999999987
Q ss_pred H
Q 018040 336 R 336 (362)
Q Consensus 336 ~ 336 (362)
.
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=390.27 Aligned_cols=209 Identities=22% Similarity=0.351 Sum_probs=174.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.++++|+++.+ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 469999999864 2599999999999999999999999999999999999999999999988 49
Q ss_pred EEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
+|+||++.+|+.|++||+. ..........++++.+++.+.+..++.++++.+++++.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999899999997 323334455667788898888888888888889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 274 LVLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||||||++||+.++..+.+.+ ++..+++|||++||+++.+..||+|++|++|++++.|++++++..
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 9999999999999999999874 444468999999999998877999999999999999999998753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-51 Score=382.57 Aligned_cols=213 Identities=22% Similarity=0.250 Sum_probs=178.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-h
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-R 190 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r 190 (362)
..++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 19 ~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 19 HMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp -CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred ceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 36999999999964 3699999999999999999999999999999999999 47899999999999977765554 4
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcCC----------CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCC-CCC
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPLE----------EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE-NWS 254 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~~----------~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~-~LS 254 (362)
+.++|+||++.+|+. |+.+|+.+.. ... .+++.++++.+++.+. ....... +||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~LS 166 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED----------LLTRSVNVGFS 166 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT----------TTTSBTTTTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccCCC
Confidence 469999999998875 8998875311 111 2345566777766421 1223333 499
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~ 331 (362)
|||||||+|||||+++|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998864 47999999999999875 899999999999999
Q ss_pred cChhHHh
Q 018040 332 DSPTRLL 338 (362)
Q Consensus 332 g~~~~l~ 338 (362)
|+++++.
T Consensus 247 g~~~~~~ 253 (267)
T 2zu0_C 247 GDFTLVK 253 (267)
T ss_dssp ECTTHHH
T ss_pred cCHHHHh
Confidence 9998874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=380.64 Aligned_cols=206 Identities=22% Similarity=0.305 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
++++|++++|++. ..++|+++||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1359999999999 9999999999999999999999999 9999999999998654 23 6789
Q ss_pred E-EEcCCCCCCcccHHhhcCcCC---CCCHHHHHHHHHHcCCC-hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 S-IIPQDPTMFEGSVHNNLDPLE---EYADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~-~v~Q~~~l~~~tv~enl~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
+ |+||++.+ ..|++||+.+.. ....+++.++++.+++. +. .++++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999988 889999997532 33466778888888775 43 33445568999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cC-eEEEEeCCEEEEecChhHHhhc
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SD-MVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~D-ri~vl~~G~i~~~g~~~~l~~~ 340 (362)
++|++|||||||++||+.+++.+.+.|++..+ |+|++||+++.+.. || ++++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999988754 99999999999876 99 9999999999999999998753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=377.13 Aligned_cols=200 Identities=25% Similarity=0.334 Sum_probs=172.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999722 3699999999999999999999999999999999999999999998 246799
Q ss_pred EEcCCCCCC-cccHHhhcCcCCC--------CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMF-EGSVHNNLDPLEE--------YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~-~~tv~enl~~~~~--------~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.++ ..|++||+.+... .. .+++.++++.+++.+..+ +.+.+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHH
Confidence 999999887 4599999975321 11 245677888887755433 334568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+++|++|||||||++||+.+++.+.+.|++.. + ++|||++||+++.+.. ||||++|++|+ ++.|+++++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999999999998864 3 7999999999999976 99999999999 99999999864
Q ss_pred c
Q 018040 340 N 340 (362)
Q Consensus 340 ~ 340 (362)
.
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=360.21 Aligned_cols=194 Identities=23% Similarity=0.348 Sum_probs=166.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 36999999999964 5999999999999999999999999999999999999999999999999875 357789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcC----C-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPL----E-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+|+||++.+|+. |++||+.+. . ....+++.++++.+++.+. ++.+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHH
Confidence 999999998876 999999652 1 2235667788888877543 334556899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+++|++|||||||++||+.+++.+.+.+++.. +++|||++||+++.+.. ||+|++ ..|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999999999999999999999999998764 47899999999999988 777764 45665
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-42 Score=348.15 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=166.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|
T Consensus 286 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred eEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 35999999999964 3799999999999999999999999999999999999999999975 2369
Q ss_pred EEEcCCCCCC-cccHHhhcCcC--CC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPL--EE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~--~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||++..+ ..|+.+++... .. ...+.+.++++.+++. ....+.+.+|||||||||+|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-----------DLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-----------GGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9999998764 56998887532 01 1223344455545443 33445556789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~~~l~~ 339 (362)
+|++|||||||++||+.++..+.+.|+++. .+.|||+||||++.+.. ||||++|++ |+++..|+|++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998864 48999999999999987 999999996 78889999998875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=350.74 Aligned_cols=199 Identities=24% Similarity=0.282 Sum_probs=168.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+ +.++
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 35999999999965 3799999999999999999999999999999999999999999975 2369
Q ss_pred EEEcCCCCCC-cccHHhhcCcC-C-C-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPL-E-E-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~-~-~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||++.++ ..|+.+|+... . . ...+.+.++++.+++.+. ..+...+|||||||||+|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHh
Confidence 9999998764 56999987542 1 1 123445566777766433 233445689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~~~l~~ 339 (362)
+|++|||||||++||+.++..+.+.|+++. .++|||+||||++.+.. ||||++|++ |++...|+|++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998863 58999999999999987 999999996 88888999998875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=340.67 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=164.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++ ..|+.+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 35899999999975 368899999999999999999999999999999999999999999765 358
Q ss_pred EEEcCCCCC-CcccHHhhcCcCC-C---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 SIIPQDPTM-FEGSVHNNLDPLE-E---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~~v~Q~~~l-~~~tv~enl~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
+|+||+... +..|+++|+.... . .....+.++++.+++. ....+.+.+|||||||||+|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-----------RLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-----------GCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999764 3569999985421 1 1223344555555543 3344556678999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLL 338 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~~~l~ 338 (362)
++|++|||||||++||+.++..+.+.|+++. .++|||+||||++.+.. ||||++|++ |.+...+++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998864 47899999999999987 999999996 5666777776654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=349.16 Aligned_cols=197 Identities=21% Similarity=0.257 Sum_probs=151.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|. .+++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 59999999999754346899999999999999999999999999999999999999999999862 1355
Q ss_pred EEcCCCCC-----Ccc----------------------------------------------------------------
Q 018040 195 IIPQDPTM-----FEG---------------------------------------------------------------- 205 (362)
Q Consensus 195 ~v~Q~~~l-----~~~---------------------------------------------------------------- 205 (362)
|++|++.. ...
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 55554310 001
Q ss_pred --cHHhhcCcC------------------------------------------CCCCHHHHHHHHHHcCCChHHHhcccc
Q 018040 206 --SVHNNLDPL------------------------------------------EEYADEEIWEALDKCQLGNEVRKNEGK 241 (362)
Q Consensus 206 --tv~enl~~~------------------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 241 (362)
|++||+.+. .....+++.+.++.+++.....
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~----- 894 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV----- 894 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH-----
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh-----
Confidence 122222210 0112344556666666643210
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
.+..+.+|||||||||+|||||+++|++|||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||||
T Consensus 895 ----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 895 ----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp ----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred ----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence 13344568999999999999999999999999999999999999999999765 5699999999999987 9999
Q ss_pred EEEeCCEEEEecC
Q 018040 321 LLLSYGLIEEFDS 333 (362)
Q Consensus 321 ~vl~~G~i~~~g~ 333 (362)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987664
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=338.28 Aligned_cols=197 Identities=22% Similarity=0.287 Sum_probs=158.2
Q ss_pred cEEE--------EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EEC
Q 018040 115 EVDI--------HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI---------AID 177 (362)
Q Consensus 115 ~i~~--------~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---------~i~ 177 (362)
.|++ +|++++|++.. .+|+++| ++++||+++|+||||||||||+++|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 4888 89999997542 4899999 999999999999999999999999999999999995 345
Q ss_pred CEeCCCCCHH--HHhcCcEEEcCCCC----CCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCC
Q 018040 178 GIDISSIGLH--DLRSRLSIIPQDPT----MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 178 g~~i~~~~~~--~~r~~i~~v~Q~~~----l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
|.++...... ..+..+++++|... ++.+|+.+|+.... ..+++.++++.+++.+..++ ...
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~~-----------~~~ 227 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDR-----------ELH 227 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGGS-----------BGG
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhCC-----------Chh
Confidence 6443221111 11345889999753 33458999885421 12346778888887654333 334
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
+|||||||||+|||||+++|++|||||||++||+.++..+.+.|+++. +++|||+||||++.+.. ||||++|+++
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 589999999999999999999999999999999999999999998764 48999999999999887 9999999865
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=332.74 Aligned_cols=197 Identities=18% Similarity=0.233 Sum_probs=164.3
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGG-----MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~G-----e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
++++++|++.. .+++++||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~~-~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSLK-KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCEE-EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCcc-cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 56788887532 4799999999999 7899999999999999999999999999962 11 2469
Q ss_pred EEEcCCCCC-CcccHHhhcCc--CC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDPTM-FEGSVHNNLDP--LE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~~l-~~~tv~enl~~--~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||+... |+.|+++|+.. .. ....+...++++.+++.+ .....+.+|||||||||+|||||++
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999754 56799998742 11 123445566777776643 3344567799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHhhc
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLEN 340 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~~~l~~~ 340 (362)
+|++|||||||++||+.++..+.+.|+++. .++|||+||||++.+.. ||||++|++ |+++..|+|+++++.
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999998763 48999999999999987 999999997 899999999999875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-40 Score=334.25 Aligned_cols=196 Identities=22% Similarity=0.262 Sum_probs=153.4
Q ss_pred EEE-EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EECCEeCCCCC
Q 018040 116 VDI-HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI---------AIDGIDISSIG 185 (362)
Q Consensus 116 i~~-~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---------~i~g~~i~~~~ 185 (362)
.++ +|++++|++. ..+|+++| +|++||+++|+||||||||||+++|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 455 5899999754 24899999 999999999999999999999999999999999995 34554432111
Q ss_pred HHH--HhcCcEEEcCCCCCC----cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 186 LHD--LRSRLSIIPQDPTMF----EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 186 ~~~--~r~~i~~v~Q~~~l~----~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
... .+..+++++|....+ .+|+.+|+.... ..+++.++++.+++.+..+ ....+|||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~-----------~~~~~LSgGekQ 165 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVLE-----------REIQHLSGGELQ 165 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTT-----------SBGGGCCHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhh-----------CChhhCCHHHHH
Confidence 111 124589999976443 348888874311 1234667888888754332 234458999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
||+|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|||+||||++.+.. ||||++|++|
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999998764 58999999999999987 9999999865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=335.92 Aligned_cols=201 Identities=21% Similarity=0.259 Sum_probs=137.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCEeCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLI---------------------QTLFRIVEPT-------AGLIAIDGIDIS 182 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl---------------------~~l~gl~~p~-------~G~I~i~g~~i~ 182 (362)
.+|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 589999999999999999999999999998 8999999998 455666665543
Q ss_pred CCCHHHHhcCcEEEcCCCCCC--------------------cccHHhhcCcCCCCC--H--HHH-----------HHHHH
Q 018040 183 SIGLHDLRSRLSIIPQDPTMF--------------------EGSVHNNLDPLEEYA--D--EEI-----------WEALD 227 (362)
Q Consensus 183 ~~~~~~~r~~i~~v~Q~~~l~--------------------~~tv~enl~~~~~~~--~--~~~-----------~~~l~ 227 (362)
.. .++.+++|+|.+.++ ..|++||+.+..... . .+. .+.++
T Consensus 112 ~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 112 RN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred cc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 21 244566666654322 348889986532110 0 000 01133
Q ss_pred HcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceE
Q 018040 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQHTLGQHF-SDCTV 304 (362)
Q Consensus 228 ~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~LD~~~~~~i~~~l~~~~-~~~tv 304 (362)
.+++.+. ..++.+.+|||||||||+|||||+++|+ +|||||||++||+.+...+.+.|+++. ++.||
T Consensus 188 ~~gL~~~----------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tv 257 (670)
T 3ux8_A 188 NVGLDYL----------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 257 (670)
T ss_dssp HTTCTTC----------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEE
T ss_pred HcCCchh----------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 3333211 1344566799999999999999999998 999999999999999999999998764 57999
Q ss_pred EEEecChhhhhhcCeEEEE------eCCEEEEecChhHHhhcCCcHH
Q 018040 305 ITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 305 i~itH~l~~~~~~Dri~vl------~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
|+||||++.+..||||++| ++|++++.|+++++.+.+...+
T Consensus 258 i~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~ 304 (670)
T 3ux8_A 258 IVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLT 304 (670)
T ss_dssp EEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHH
T ss_pred EEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHH
Confidence 9999999988779999999 8999999999999987654333
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=330.60 Aligned_cols=196 Identities=21% Similarity=0.261 Sum_probs=162.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..+...|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+| |+| +|.+... +.++
T Consensus 434 ~~L~~~~ls~~yg~~--~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECCE--EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 358888999999753 59999999999999999999999999999999996 554 4543311 1247
Q ss_pred EEEcCCC-CCC-cccHHhhcCcC-CCCCHHHHHHHHHHcCCC-hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDP-TMF-EGSVHNNLDPL-EEYADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~-~l~-~~tv~enl~~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|++|++ .++ ..|+.+|+.+. ... .+++.++++.+++. +..++. ..+||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHHhc
Confidence 8999985 444 45999998641 112 67788899999885 333333 34579999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l~~ 339 (362)
+|++|||||||++||+.+++.+.+.|++ .++|+|+||||++.+.. ||||++|++|+++ ..|+++++..
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999988 58999999999999987 9999999999997 5899998865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=332.92 Aligned_cols=209 Identities=23% Similarity=0.286 Sum_probs=151.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------------cCCCCCccEEEECCEeCCCCCHH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF----------------------RIVEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----------------------gl~~p~~G~I~i~g~~i~~~~~~ 187 (362)
..+|+||||+|++||+++|+||||||||||+++|+ |+.. ..|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998764 3333 356899999887543311
Q ss_pred HHh-----------------------------------------cCcEEEcCCCCCC-----------------------
Q 018040 188 DLR-----------------------------------------SRLSIIPQDPTMF----------------------- 203 (362)
Q Consensus 188 ~~r-----------------------------------------~~i~~v~Q~~~l~----------------------- 203 (362)
... ...|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 100 0123333333222
Q ss_pred ----------cccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC-
Q 018040 204 ----------EGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS- 271 (362)
Q Consensus 204 ----------~~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p- 271 (362)
..|+.+|+.+..... .++..+.+..+++.. ...++.+.+|||||||||+|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 236666765543221 123344555555421 1235566789999999999999999887
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCEEEEecChhHHhhcCC
Q 018040 272 --KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 272 --~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~i~~~g~~~~l~~~~~ 342 (362)
++|||||||++||+.+...+.+.|+++. +++|||+||||++.+..||||++| ++|+|++.|+++++.+.+.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 643 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCc
Confidence 5999999999999999999999998764 589999999999988779999999 8999999999999987644
Q ss_pred cHHHHHH
Q 018040 343 SSFAQLV 349 (362)
Q Consensus 343 ~~~~~~~ 349 (362)
.....++
T Consensus 644 ~~~~~~~ 650 (670)
T 3ux8_A 644 SHTGRYL 650 (670)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 4333333
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=319.40 Aligned_cols=196 Identities=22% Similarity=0.240 Sum_probs=146.3
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEeCCCCCHHH
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-----------IDGIDISSIGLHD 188 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~~ 188 (362)
|++++|+... ..|++++ ++++||++||+||||||||||+++|+|+++|++|+|. +.|.++.......
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 4578897653 4778777 6899999999999999999999999999999999982 3332221111111
Q ss_pred HhcCc--EEEcCCCCCC----c---ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRL--SIIPQDPTMF----E---GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i--~~v~Q~~~l~----~---~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+.+.+ .+.+|....+ . .++.+++........+++.++++.+++.+. ..+...+|||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGe~Q 228 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV-----------LKRDIEKLSGGELQ 228 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGG-----------GGSCTTTCCHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcch-----------hCCChHHCCHHHHH
Confidence 22222 3344432211 1 134444432223345677788888876543 34445678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
||+|||||+++|++||||||||+||+.+...+.+.++++. +++|||+||||++.+.. ||||++|++|..
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 9999999999999999999999999999999999999865 47999999999999988 999999998753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=317.48 Aligned_cols=192 Identities=16% Similarity=0.223 Sum_probs=146.1
Q ss_pred EEEEEeCCCCCceeeeeeEE-EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-----------EECCEeCCCCCHH
Q 018040 120 GLQVRYAPHLPLVLRGLTCT-FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-----------AIDGIDISSIGLH 187 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~-i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-----------~i~g~~i~~~~~~ 187 (362)
+.+.+|+.+. ++-..+. .++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 4 ~~~~~~~~~~---f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 4 EVIHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CEEEESSTTS---CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCceecCCCc---eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 4678898663 4444444 45999999999999999999999999999999998 5677655322111
Q ss_pred HHhc--CcEE----EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 188 DLRS--RLSI----IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 188 ~~r~--~i~~----v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
.... .+.. ++|.+.++.+++++++.... ..+++.++++.+++....+ ....+|||||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWN-----------KDANILSGGGLQRL 147 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 1111 2333 34444455668887764211 1234567778887754332 33456899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
+|||||+++|++||||||||+||+.+...+.+.|+++.+++|||+||||++.+.. ||+|++|++|.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999987778999999999999988 99999998754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=317.47 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=149.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHcCCCCC------cc------EEEECCEeCCCCCH---
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLI---------QTLFRIVEPT------AG------LIAIDGIDISSIGL--- 186 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl---------~~l~gl~~p~------~G------~I~i~g~~i~~~~~--- 186 (362)
..|+||||+|++|++++|+|+||||||||+ +.+.+...+. +| .+.++..++...+.
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3444443332 22 35556555532211
Q ss_pred H-------HH-------------------------------hcCcEEEcCCCCCCcc-----------------------
Q 018040 187 H-------DL-------------------------------RSRLSIIPQDPTMFEG----------------------- 205 (362)
Q Consensus 187 ~-------~~-------------------------------r~~i~~v~Q~~~l~~~----------------------- 205 (362)
. .+ .+..|+++|+..+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00 1235777777655432
Q ss_pred ----------cHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC---
Q 018040 206 ----------SVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS--- 271 (362)
Q Consensus 206 ----------tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p--- 271 (362)
|+.+++.++.... ..+..++++.+++. ...+++.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~----------~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLG----------YVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGG----------GSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCc----------hhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 3333333322211 12333445555442 12467788999999999999999999875
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCEEEEecChhHHhhcCCc
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~i~~~g~~~~l~~~~~~ 343 (362)
+||||||||+|||+.+.+.+++.|+++. +|+|||+||||++.+..||+|++| ++|+|++.|+|+++++++++
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~s 906 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHS 906 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCch
Confidence 7999999999999999999999998764 589999999999999889999999 89999999999999987643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=289.79 Aligned_cols=200 Identities=19% Similarity=0.172 Sum_probs=146.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCccE
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--------------------------------------PTAGL 173 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--------------------------------------p~~G~ 173 (362)
++++++|++.+| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999977764 44789
Q ss_pred EEECCEeCCCCCHHHHhcC-cEEEcCCCCCCcccHHhhcCcCCCCCH---------------------------------
Q 018040 174 IAIDGIDISSIGLHDLRSR-LSIIPQDPTMFEGSVHNNLDPLEEYAD--------------------------------- 219 (362)
Q Consensus 174 I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~tv~enl~~~~~~~~--------------------------------- 219 (362)
+++||++++..+..++.+. +++++|+..++..+..++..+......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999875555666655 899999987765544333222111110
Q ss_pred ----------------------------------HHHHHHHHHcCCChHHH--hc-------cccch---hhhccCCCC-
Q 018040 220 ----------------------------------EEIWEALDKCQLGNEVR--KN-------EGKLE---SRVTENGEN- 252 (362)
Q Consensus 220 ----------------------------------~~~~~~l~~~~l~~~~~--~~-------~~~l~---~~~~~~g~~- 252 (362)
..+.+.++.+++..... .. ..+++ ..+..++.+
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 01111111121111000 00 00111 123333333
Q ss_pred -------CChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE
Q 018040 253 -------WSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 253 -------LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|++..+++|||+|||+++.+..|||+++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 7999999999999999999 9999999999999999999999999887789999999999887779999999
Q ss_pred ----eCCEEEEec
Q 018040 324 ----SYGLIEEFD 332 (362)
Q Consensus 324 ----~~G~i~~~g 332 (362)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=311.28 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCC-cccEEEEEEEEEeCCCCCceeeeeeEEEeCC
Q 018040 65 MLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS-QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGG 143 (362)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~l~~~y~~~~~~vL~~isl~i~~G 143 (362)
.++..+...+..++.+..+.+|+.++++.+++.. . ....|+. .+.|+++||+|+|+ .++|+++||+|++|
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~-----~-~~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~G 126 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLA-----T-GEGSWKSILTFFNYQNIELITF---INALKLWLKGIPKK 126 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHC-----C-SSCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----C-CCCcccccCCeEEEEEEEEEcC---hhhhccceEEecCC
Confidence 4455667778888999999999999987543211 0 1111222 23589999999997 35999999999999
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh-hcCcCCCCCHHHH
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN-NLDPLEEYADEEI 222 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e-nl~~~~~~~~~~~ 222 (362)
++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.+|+++ |+.+....++ .+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~-~~ 184 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH-AC 184 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH-HH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH-HH
Confidence 999999999999999999999999 7988 35689999999999997 8877543333 33
Q ss_pred HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCc
Q 018040 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC 302 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~ 302 (362)
++.++.+ ++.+++ |.+|||||||| |||++++|+||| ||+||+.+++.+..
T Consensus 185 ~~~i~~~--------L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 185 WRYFDTY--------LRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp HHHHHHT--------TTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred HHHHHHH--------hHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 3333321 455665 78999999999 999999999999 99999999888752
Q ss_pred eEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 303 TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 303 tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
+||+++.+..||+| +|++|++++.|+++++ .+.|.+++.
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~ 273 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWG 273 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTT
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHH
Confidence 29999998889999 9999999999999998 245666654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=303.23 Aligned_cols=212 Identities=25% Similarity=0.321 Sum_probs=155.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHcCC-------CC----------------
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQT-LFRIV-------EP---------------- 169 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~-l~gl~-------~p---------------- 169 (362)
..++++|+++ .+|+||||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 4599999975 16999999999999999999999999999996 66553 22
Q ss_pred --Ccc-------EEEECCEeCCCCCH----------HHHhc---------CcEEEcCCC---------------------
Q 018040 170 --TAG-------LIAIDGIDISSIGL----------HDLRS---------RLSIIPQDP--------------------- 200 (362)
Q Consensus 170 --~~G-------~I~i~g~~i~~~~~----------~~~r~---------~i~~v~Q~~--------------------- 200 (362)
.+| .|.++|.++...+. +.+|. .+||.++..
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899988754332 12222 123322211
Q ss_pred -CCC------------------------c-ccHHhhcC--------cCCCCC-HHHHHHHHHHcCCChHHHhccccchhh
Q 018040 201 -TMF------------------------E-GSVHNNLD--------PLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESR 245 (362)
Q Consensus 201 -~l~------------------------~-~tv~enl~--------~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~ 245 (362)
.++ . .++.||+. ++.... .++..++++.+++... .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~----------~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL----------R 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------B
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------c
Confidence 111 1 13444432 221111 1234455555554321 2
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEE
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~---p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~ 321 (362)
+++.+.+|||||||||+|||+|+++ |++|||||||+|||+.+.+.+.+.|+++. +|.|||+|||+++.+..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 4566678999999999999999996 79999999999999999999999998764 6899999999999996699999
Q ss_pred EE------eCCEEEEecChhHHhhcCC
Q 018040 322 LL------SYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 322 vl------~~G~i~~~g~~~~l~~~~~ 342 (362)
+| ++|+|++.|+++++++.+.
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 99 7999999999999987643
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=303.93 Aligned_cols=212 Identities=23% Similarity=0.293 Sum_probs=155.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC-------CCCcc-------------
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIV-------EPTAG------------- 172 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~-------~p~~G------------- 172 (362)
..+++++++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 3588988852 2699999999999999999999999999999864 221 12233
Q ss_pred EEEECCEeCCCCC---HH-------HH---------hcCcEEEcCCCCCC------------------------------
Q 018040 173 LIAIDGIDISSIG---LH-------DL---------RSRLSIIPQDPTMF------------------------------ 203 (362)
Q Consensus 173 ~I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~l~------------------------------ 203 (362)
.|.++|.++...+ +. .. .+.+||++|.+.+.
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788888874321 11 11 13468888864321
Q ss_pred -------------------------cccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 204 -------------------------EGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 204 -------------------------~~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
..|+.+|+.++.... ..+..++++.+++.. ..+++.+.+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~----------~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSS----------SBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCc----------ccccCchhhCCHHH
Confidence 013333333322211 112334455554432 13456677899999
Q ss_pred HHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCE
Q 018040 258 RQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGL 327 (362)
Q Consensus 258 rQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~ 327 (362)
||||+|||||+++| ++|||||||+|||+.+.+.+.+.|+++. +|.|||+|||+++.+..||||++| ++|+
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCE
Confidence 99999999999875 9999999999999999999999998764 589999999999998779999999 7899
Q ss_pred EEEecChhHHhhcCC
Q 018040 328 IEEFDSPTRLLENKS 342 (362)
Q Consensus 328 i~~~g~~~~l~~~~~ 342 (362)
|++.|+++++.+.+.
T Consensus 931 Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 931 IVAVGTPEEVAEVKE 945 (972)
T ss_dssp EEEEESHHHHHTCTT
T ss_pred EEEecCHHHHHhCch
Confidence 999999999987644
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=314.44 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=150.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-E-EEECCEeCCCCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-L-IAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~-I~i~g~~i~~~~~~~~r~~ 192 (362)
.++++|++++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |++|| + .++.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 456666666663 68999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred cEEEcCCCCCCc----ccHHhhcCcCCCC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDPTMFE----GSVHNNLDPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~~l~~----~tv~enl~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
++|+||++.+|. .|+++|+ +.... ..+++.++++.+++. .... +.+|||||||||+|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-----------~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-----------RINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-----------SGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-----------cccc--hhhhhHHHHHHHHH
Confidence 999999986542 4889888 43221 111222233333332 2222 55789999999999
Q ss_pred HHH--hcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh------hhhh-cCe-----EEEEe
Q 018040 264 ARV--LLKKSKV----LVLDE-ATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT------SVID-SDM-----VLLLS 324 (362)
Q Consensus 264 Ara--l~~~p~i----llLDE-Pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~------~~~~-~Dr-----i~vl~ 324 (362)
||| |+.+|++ ||||| ||++||+. .+.+.+.+++. +.|+|+|||+.+ .+.. ||| |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 66777777654 679999999987 6655 999 99999
Q ss_pred -CCEEEEecChhHHhh
Q 018040 325 -YGLIEEFDSPTRLLE 339 (362)
Q Consensus 325 -~G~i~~~g~~~~l~~ 339 (362)
+|+++ .|+++++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 999988743
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-30 Score=247.71 Aligned_cols=201 Identities=18% Similarity=0.217 Sum_probs=136.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----------------------------------------------
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV----------------------------------------------- 167 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~----------------------------------------------- 167 (362)
++++++.+| +++|+||||||||||+.+|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578889999 99999999999999999999554
Q ss_pred ---CCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC-cccHHhhcCcCCC--------C--------CHHHHHHHHH
Q 018040 168 ---EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGSVHNNLDPLEE--------Y--------ADEEIWEALD 227 (362)
Q Consensus 168 ---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~--------~--------~~~~~~~~l~ 227 (362)
.+.+|.+++||.++...+...+...+++.||+..++ .+++.+++..... . ..+++.+.+.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 234578899998874334445566788888887665 5677776643111 0 0011111111
Q ss_pred Hc------------CCChH-HHhccccchhh------hccCCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCC
Q 018040 228 KC------------QLGNE-VRKNEGKLESR------VTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVD 284 (362)
Q Consensus 228 ~~------------~l~~~-~~~~~~~l~~~------~~~~g~~LSgGqrQRv~iAral~----~~p~illLDEPts~LD 284 (362)
.+ .+... ...++.+++.. ....+.+||||||||++|||||+ .+|+++||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 10 00000 01111223221 22345689999999999999996 6899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeE--EEEeCCEE-EEecChhH
Q 018040 285 TATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMV--LLLSYGLI-EEFDSPTR 336 (362)
Q Consensus 285 ~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri--~vl~~G~i-~~~g~~~~ 336 (362)
+...+.+.+.+++..+++|+|++||+.+.+..||++ ++|.+|+. +.....++
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 999999999998876678999999998766669987 88888854 33344443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-32 Score=248.51 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=101.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+++++||+||++ ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 588886 89999999999999999999999999 99999994 333321 1223567899999987 556
Q ss_pred c-CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 018040 211 L-DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289 (362)
Q Consensus 211 l-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~ 289 (362)
+ .+... ....+....-. ...+..+.. .| |||||++|||||+.+|++|||||||++ ++.
T Consensus 79 l~~~~~~-----~~~~~~~~~~~-------~~~~~~l~~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRP-----LHDALRDMVEP-------EVIPKLMEA---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHH-----HHHHHTTTSCT-------THHHHHHHT---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHH-----HHHHHHHhccH-------HHHHHHHHh---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 5 22110 00001000000 011222222 12 999999999999999999999999999 888
Q ss_pred HHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 290 ~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
.+.+.|++..+++||| +||+++.+.. +...++|.
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 8999998774578999 9999987654 34456664
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=240.24 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=76.4
Q ss_pred ccCCCCCChhHHHHHHHHHHhc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCe
Q 018040 247 TENGENWSMGQRQLVCLARVLL------KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iAral~------~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dr 319 (362)
++.+.+||||||||++|||||+ .+|++|||||||++||+.+...+.+.+++.. .++|||+|||+++.+..||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3566789999999999999999 7999999999999999999999999998864 57999999999998766999
Q ss_pred EEEEeCCEEEE
Q 018040 320 VLLLSYGLIEE 330 (362)
Q Consensus 320 i~vl~~G~i~~ 330 (362)
|++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999975
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-29 Score=222.37 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=107.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 224 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 224 (362)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~--~~------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFS--SK------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEE--ET-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHH--hh-------
Confidence 689999999999999999999985 556666543222113567899999986 33344310 00
Q ss_pred HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH-----hcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHh
Q 018040 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV-----LLKKSKVLVLDE--ATASVDTATDNLIQHTLGQ 297 (362)
Q Consensus 225 ~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra-----l~~~p~illLDE--Pts~LD~~~~~~i~~~l~~ 297 (362)
+.. .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+.+
T Consensus 63 -----~~~---------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 63 -----FFT---------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -----TCC---------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -----cCC---------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 000 0123455567899999999999996 999999999999 9999999999999999876
Q ss_pred hcCCceEEEEec---Chhhhhh-cCeEEEEeCCEEEE
Q 018040 298 HFSDCTVITIAH---RITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 298 ~~~~~tvi~itH---~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
.+.|+|+++| +.+.+.. ||| .+|++++
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4667888885 7788877 887 5677766
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-29 Score=217.41 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=103.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC--CcccHHhhcC
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM--FEGSVHNNLD 212 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l--~~~tv~enl~ 212 (362)
|+||++++||+++|+||||||||||++++.+ |...++ .+.++ ++++|++.- +.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 222221 22233 677887631 1222222210
Q ss_pred cCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH------
Q 018040 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA------ 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~------ 286 (362)
......... ++...+. .....|||||||++||||++.+|++++|||||++||+.
T Consensus 64 --------~~~~~~~~~-----------g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 64 --------YIVSKRLQL-----------GKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp --------HHHHHHHHT-----------TCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred --------HHHHHHHhC-----------CCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 001111111 2222222 23346999999999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeE
Q 018040 287 ----------TDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 287 ----------~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri 320 (362)
....+.+.+++.. +|.|+|++||+++.+..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4477788876643 489999999999999887664
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-30 Score=250.81 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=136.2
Q ss_pred ceeeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 018040 131 LVLRGLTCTFLGGM--------------------KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 131 ~vL~~isl~i~~Ge--------------------~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 190 (362)
.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997652 1
Q ss_pred cCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh--HHHHHHHHHHhc
Q 018040 191 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG--QRQLVCLARVLL 268 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG--qrQRv~iAral~ 268 (362)
.++++|++.....|+.||+.+... ...+.+.++.+++.+. +..+ . ||+| |+||++|||||+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHHHH
Confidence 278999975445689998865422 2346677777775432 1111 1 6999 999999999999
Q ss_pred C----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc------C----CceEEEEecChhh--hhh-cCeEE-EEe
Q 018040 269 K----------KSKVLVLDEATASVDTATDNLIQHTLGQHF------S----DCTVITIAHRITS--VID-SDMVL-LLS 324 (362)
Q Consensus 269 ~----------~p~illLDEPts~LD~~~~~~i~~~l~~~~------~----~~tvi~itH~l~~--~~~-~Dri~-vl~ 324 (362)
+ +|++++|||||++||+.+++.+.+.+++.. . ..+++++||.++. +.. ||+|. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999998888887642 1 2578889999886 776 88875 455
Q ss_pred CCE
Q 018040 325 YGL 327 (362)
Q Consensus 325 ~G~ 327 (362)
.|+
T Consensus 253 eg~ 255 (413)
T 1tq4_A 253 IYK 255 (413)
T ss_dssp GGG
T ss_pred cch
Confidence 543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-29 Score=228.80 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=114.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCcEEEcCCCCCCcc-c-H
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRLSIIPQDPTMFEG-S-V 207 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~l~~~-t-v 207 (362)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|+||++.+|+. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 5 99999 877644322 2345689999999877643 2 1
Q ss_pred HhhcC---cCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH-----HHHhcCCCCEEEE
Q 018040 208 HNNLD---PLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL-----ARVLLKKSKVLVL 276 (362)
Q Consensus 208 ~enl~---~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i-----Aral~~~p~illL 276 (362)
.+++. +.. .....++.++++..... .+. .+|||||+||++| ||+++.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 22221 111 12244556666543211 111 4689999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 277 DEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 277 DEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
||||+++|..++..+.+.+....++.| ++| +..||.|+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999988876554545 455 344777666543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-27 Score=230.19 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=108.2
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
+++++|+.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999999999999999998642 21111233344432
Q ss_pred CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHH
Q 018040 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291 (362)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i 291 (362)
+ |||+||++|||||.++|++++|||||+. .+
T Consensus 224 --------------------------------------g----gg~~~r~~la~aL~~~p~ilildE~~~~-------e~ 254 (330)
T 2pt7_A 224 --------------------------------------G----GNITSADCLKSCLRMRPDRIILGELRSS-------EA 254 (330)
T ss_dssp --------------------------------------B----TTBCHHHHHHHHTTSCCSEEEECCCCST-------HH
T ss_pred --------------------------------------C----CChhHHHHHHHHhhhCCCEEEEcCCChH-------HH
Confidence 0 8999999999999999999999999982 24
Q ss_pred HHHHHhhcCC-ceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 292 QHTLGQHFSD-CTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 292 ~~~l~~~~~~-~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
.+.++....+ .|+|+++|+++....|||+++|.+|+.
T Consensus 255 ~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 255 YDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 5566655555 489999999996666999999998853
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-27 Score=225.55 Aligned_cols=175 Identities=15% Similarity=0.125 Sum_probs=125.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcCcEEEcCCCC-CCcc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDL--RSRLSIIPQDPT-MFEG 205 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-l~~~ 205 (362)
+.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999876532 1233 357999999987 7654
Q ss_pred -cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCC
Q 018040 206 -SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATAS 282 (362)
Q Consensus 206 -tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~ 282 (362)
|+++|+.+....... ...++.+++.+..+ ..+ .+|| |||++||||++.+|+ +|+|| ||++
T Consensus 170 ~~v~e~l~~~~~~~~d--~~lldt~gl~~~~~-------~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD--VVLCDTSGRLHTNY-------SLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCSSCCH-------HHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcCCc--chHHhcCCCCcchh-------HHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 899988532100000 01222333322211 122 2368 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEec---------Chhhhhh-cCeEEEEeCCEE
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAH---------RITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH---------~l~~~~~-~Dri~vl~~G~i 328 (362)
+|+..+. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 233 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9997542 22221 24789999999 3334444 689999999965
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-28 Score=219.13 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=111.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVH 208 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~ 208 (362)
.++++| .+|++||+++|+||||||||||+++|+|+++. |.+++......+....++.++|+||++.+|+. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 357888 79999999999999999999999999999863 44444222111112235679999999887754 677
Q ss_pred hhcCcC----C-----CCCHHHHHHHHHHcC-----CChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 209 NNLDPL----E-----EYADEEIWEALDKCQ-----LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 209 enl~~~----~-----~~~~~~~~~~l~~~~-----l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+|+.+. . .....+..+.++... +.. .++.......+..|| ||+.+|+++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~------~gl~~~~~~~~~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDL------AGARAIKKTMPEAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCH------HHHHHHHHHCTTSEE-----------EEEECSCHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCH------HHHHHHHHhcCCcEE-----------EEEECCCHH
Confidence 766321 1 112333333333320 110 112222233344556 899999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEe
Q 018040 275 VLDEATASV----DTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLS 324 (362)
Q Consensus 275 lLDEPts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~ 324 (362)
+|||||+++ |+..++.+.+.+++.. .+.|+|+|||+++.+.. ||||++|.
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999998 6778889999888764 47899999999999987 99999985
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-28 Score=242.43 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=151.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---eCCCC-----C
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI---DISSI-----G 185 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~---~i~~~-----~ 185 (362)
..++++++++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.++|+ ++.+. .
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468899999999633 3599999 999999999999999999999999999999999999999998 44322 1
Q ss_pred HHHHhcCcEEEcCC-CCCC-cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 186 LHDLRSRLSIIPQD-PTMF-EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~-~~l~-~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
...+++.++|++|+ ..++ ..++.+|+.+.. +. ....+ ..+... + +...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~---~~~~~--~~v~~~---l-----d~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----ED---FRDRG--QHVLLI---M-----DSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HH---HHTTT--CEEEEE---E-----ECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HH---HHhCC--CCHHHH---H-----HhHHHHHHHH-HHHHH
Confidence 23467789999995 3333 347888875321 11 11101 000000 1 1234579999 99999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-----Cc-----eEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-----DC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
| +.+|++ |+|||+.+...+.+.+.+..+ |+ ||+++|||++ ...||++++|.+|+|+..++
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 889988 999999999999999987643 54 9999999999 45599999999999999999
Q ss_pred hhHHhh
Q 018040 334 PTRLLE 339 (362)
Q Consensus 334 ~~~l~~ 339 (362)
+.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 888754
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-27 Score=219.05 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=92.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhcCcCCCCC----H
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYA----D 219 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~----~ 219 (362)
.++|+||||||||||+++|+|+..|++|+|.++|.++... ..++.++|++|++.++.. |+.||+.+..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 5899999999999999999999999999999999887432 345679999999988765 9999998754322 1
Q ss_pred HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~ 299 (362)
+.+.+.+. ..+.+.++ .+||||||||+++|||++. +++||||+++||+... .+++.+.+
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh--
Confidence 22333322 12222222 2379999999999999886 9999999999999763 33333332
Q ss_pred CCceEEEEecChhhh
Q 018040 300 SDCTVITIAHRITSV 314 (362)
Q Consensus 300 ~~~tvi~itH~l~~~ 314 (362)
..++|+|.|..+.+
T Consensus 140 -~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 -VVNIIPVIAKADTM 153 (270)
T ss_dssp -TSEEEEEETTGGGS
T ss_pred -cCcEEEEEeccccC
Confidence 37999999987755
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=209.66 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=75.3
Q ss_pred CCChhHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE
Q 018040 252 NWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
.||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998764 79999999 444 8999999
Q ss_pred EeCCEEEEecChhHH
Q 018040 323 LSYGLIEEFDSPTRL 337 (362)
Q Consensus 323 l~~G~i~~~g~~~~l 337 (362)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999886
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-26 Score=221.79 Aligned_cols=173 Identities=16% Similarity=0.131 Sum_probs=126.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcCcEEEcCCCC-CCc-c
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDL--RSRLSIIPQDPT-MFE-G 205 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-l~~-~ 205 (362)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999875432 1223 457999999987 665 4
Q ss_pred cHHhhcCcCCCC-CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCC
Q 018040 206 SVHNNLDPLEEY-ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATAS 282 (362)
Q Consensus 206 tv~enl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~ 282 (362)
|+++|+.+.... .+ ...++.+|+.+..+ ..+ .+|| |||++||||++.+|+ +|+|| ||+|
T Consensus 228 tv~e~l~~~~~~~~d---~~lldt~Gl~~~~~-------~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD---VVLCDTSGRLHTNY-------SLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS---EEEEECCCCSSCCH-------HHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH---HHHHHhcCCChhhh-------hHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 889988532100 00 01122333322211 122 2368 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecC---------hhhhhh-cCeEEEEeCCEE
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHR---------ITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~---------l~~~~~-~Dri~vl~~G~i 328 (362)
+|+..+. +.+.+ ..+.|+|++||. ++.+.. .+.|.++..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 12221 247899999992 344444 689999999964
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-27 Score=222.57 Aligned_cols=175 Identities=13% Similarity=0.175 Sum_probs=130.8
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCT-----------------------FLGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~-----------------------i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 477777765 899999999999999999999999999999
Q ss_pred CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC------CCCHHHHHHHHHHcCCChHHHhccccch
Q 018040 170 TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE------EYADEEIWEALDKCQLGNEVRKNEGKLE 243 (362)
Q Consensus 170 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~ 243 (362)
+.|. +++++|+|++.+++.|+++|+.+.. ....+.+.+.++.++ . +..
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~--------~~~ 170 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-S--------GSD 170 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T--------TCS
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C--------Ccc
Confidence 7663 4699999999988889999986532 122345555555543 1 111
Q ss_pred hhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh-h-cCeEE
Q 018040 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI-D-SDMVL 321 (362)
Q Consensus 244 ~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~-~Dri~ 321 (362)
......|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+|+|+|+.+... + .+|.+
T Consensus 171 ---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~ 240 (312)
T 3aez_A 171 ---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFL 240 (312)
T ss_dssp ---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHH
T ss_pred ---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHH
Confidence 11223589999999999999999999999999999998622 1122221 2 5688888887654 3 77777
Q ss_pred EEeCCE
Q 018040 322 LLSYGL 327 (362)
Q Consensus 322 vl~~G~ 327 (362)
.+.+|+
T Consensus 241 ~~rd~~ 246 (312)
T 3aez_A 241 AMRTTA 246 (312)
T ss_dssp HHTTTG
T ss_pred HHHhcc
Confidence 776654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-25 Score=216.80 Aligned_cols=195 Identities=15% Similarity=0.096 Sum_probs=140.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC-------CCH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS-------IGL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-------~~~ 186 (362)
..++.+++++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ...
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358899999999733 3599999 9999999999999999999999999999999999999998865211 111
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchh-hhccCCCCCChhHHHHHHHHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLES-RVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~g~~LSgGqrQRv~iAr 265 (362)
..+++.+.+++|... +. .+++..++..+.+.+..... +.+. .+-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~~-----------~~r~~~~~~~~~~ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----PA-----------LERMKAAFTATTIAEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTTS----CH-----------HHHHHHHHHHHHHHHHHHTT--TCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCCC----CH-----------HHHHHHHHHHHHHHHHHHhc--cccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 223344666665421 11 12222222222222221110 1000 0113345689999 999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc---CCc-----eEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF---SDC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l 337 (362)
+.+|++ |+|+|+.....+.+.+.+.. .|. ||+++|||++ ...||++++|.+|+|+..++++++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688887 99999999999999998764 366 8999999999 334999999999999999988776
Q ss_pred h
Q 018040 338 L 338 (362)
Q Consensus 338 ~ 338 (362)
.
T Consensus 254 ~ 254 (347)
T 2obl_A 254 N 254 (347)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-24 Score=214.44 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=71.1
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCC
Q 018040 250 GENW-SMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYG 326 (362)
Q Consensus 250 g~~L-SgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G 326 (362)
..+| ||||||||+|||||+.+| ++|||||||+|||+.+...+.+.|+++.+++|||+|||+++.+..|||+++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4456 999999999999999999 9999999999999999999999998876689999999999988889999999654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-24 Score=228.77 Aligned_cols=170 Identities=11% Similarity=0.143 Sum_probs=120.8
Q ss_pred ccEEEEE-----EEEEeCCCCCceeeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 114 GEVDIHG-----LQVRYAPHLPLVLRGLTCTFLG-------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 114 ~~i~~~~-----l~~~y~~~~~~vL~~isl~i~~-------Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
+.|+++| |++.|.++ ..+++|++|++++ |++++|+||||||||||+|++ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4699999 99999433 3699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcCcE-EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 182 SSIGLHDLRSRLS-IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 182 ~~~~~~~~r~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
..++| ||||++. ..++.+++.. .+++.+.+.. + ...+|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~--------------rig~~d~~~~---~--------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFT--------------RLGASDRIMS---G--------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEE--------------ECC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHH--------------HcCCHHHHhh---c--------hhhhHHHHHH-
Confidence 23455 9999873 4467777632 1122211111 1 1235777765
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEE--EecCh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATD-NLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIE--EFDSP 334 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~-~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~--~~g~~ 334 (362)
+++|++++.+|+++||||||+|+|+... ..+...++.+. + ++++|++||+++.+.. ||++.++ +|++. +.|++
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 9999999999999999999999999874 55677777653 3 7899999999999987 9998887 58877 44544
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=193.70 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=68.4
Q ss_pred ccCCCCCChhHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCe
Q 018040 247 TENGENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 247 ~~~g~~LSgGqrQ------Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dr 319 (362)
......||||||| |+++|||++.+|++|||||||++||+.....+.+.|++.. .++|+|+|||+.+....||+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 3456789999999 6788899999999999999999999999999999998754 46899999999776555999
Q ss_pred EEEEe
Q 018040 320 VLLLS 324 (362)
Q Consensus 320 i~vl~ 324 (362)
|++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-25 Score=227.15 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=117.1
Q ss_pred CceeeeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCccc
Q 018040 130 PLVLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQT--LFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGS 206 (362)
Q Consensus 130 ~~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~--l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t 206 (362)
.++|+++|+ .|++||+++|+||||||||||+++ +.|+++|++|.|+++|.+. .......++.+||++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 358999999 999999999999999999999999 6899999999999999773 112234457799999987521
Q ss_pred HHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC----
Q 018040 207 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS---- 282 (362)
Q Consensus 207 v~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~---- 282 (362)
+|+........++..++++.+++.+..++. ...|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASPDPEGQEVVGGFDLSALIERI-----------NYAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCCCSSCCSCCSSHHHHHHHHHH-----------HHHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred --CcEEEEecCcccchhhhhcccCHHHHHHHH-----------HHHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 112110000000000111111111111111 1224666 4789999999984
Q ss_pred -CCHHHHHHHHHHHHhhc-CCceEEEEecChhhh---------hh-cCeEEEEeC
Q 018040 283 -VDTATDNLIQHTLGQHF-SDCTVITIAHRITSV---------ID-SDMVLLLSY 325 (362)
Q Consensus 283 -LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~---------~~-~Dri~vl~~ 325 (362)
+|+..++.+.+.++.+. .|+|+|++||+++.+ .. ||+|++|++
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 68999999999998764 489999999999884 55 999999998
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-23 Score=222.01 Aligned_cols=170 Identities=19% Similarity=0.126 Sum_probs=119.2
Q ss_pred HHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHh
Q 018040 159 LIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRK 237 (362)
Q Consensus 159 Ll~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~ 237 (362)
...|..+.+.|..|+|.++|+++.++....+.+.++|+.+-. .+..++...... ....+..+.+..+++...
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l--- 456 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTEREREIVGELLKEIEKRLEFLVDVGLEYL--- 456 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTTTHHHHHHHHHHHHHHHHTTTCTTC---
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHHHHHhhHHHHHHHHHHHHHcCCccc---
Confidence 345556678899999999999885432222233333322210 011111100000 000112233444444211
Q ss_pred ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhh
Q 018040 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 238 ~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 314 (362)
.+++...+|||||||||+|||||+++|+ +|||||||++||+...+.+.+.|+++. .|.|||+||||++.+
T Consensus 457 -------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~ 529 (916)
T 3pih_A 457 -------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI 529 (916)
T ss_dssp -------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHH
T ss_pred -------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1345566799999999999999999887 999999999999999999999999875 479999999999998
Q ss_pred hhcCeEEEE------eCCEEEEecChhHHhhcCC
Q 018040 315 IDSDMVLLL------SYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 315 ~~~Dri~vl------~~G~i~~~g~~~~l~~~~~ 342 (362)
..||+|++| ++|++++.|+++++++.+.
T Consensus 530 ~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 530 RNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp HTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred HhCCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence 889999999 8999999999999987654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-23 Score=195.70 Aligned_cols=181 Identities=12% Similarity=0.110 Sum_probs=118.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
++|+++++.+++|++++|+||||||||||++.|+|.+.|.+| .|.+.+.+ .+..++++++..++|...+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 379999999999999999999999999999999999999878 77654433 3455565555555554322 1112
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH-HHHHHHHHHhcCCCCEEEEeCCCC---C---
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ-RQLVCLARVLLKKSKVLVLDEATA---S--- 282 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq-rQRv~iAral~~~p~illLDEPts---~--- 282 (362)
++... ....++..+..+.+ +... .+ .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~~~~~-----l~~~--~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWFDEL-----FGND--TF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHHHHHH-----HSSS--CE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHHHHHH-----hccC--CE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 22110 01111222222111 0000 11 1223335679999 67777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHhhc--CCceEEEEecCh--h--------------------hhhh-cCeEEEEeCCEE
Q 018040 283 VDT-ATDNLIQHTLGQHF--SDCTVITIAHRI--T--------------------SVID-SDMVLLLSYGLI 328 (362)
Q Consensus 283 LD~-~~~~~i~~~l~~~~--~~~tvi~itH~l--~--------------------~~~~-~Dri~vl~~G~i 328 (362)
+|. .....+.+.|+++. .++|||++||+. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 55567778887653 379999999995 4 5665 999999999875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-23 Score=195.96 Aligned_cols=130 Identities=19% Similarity=0.142 Sum_probs=97.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999987653211 1112222221
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~ 289 (362)
.++ ++. ..| |++|||||.++|+++++|||| |+++..
T Consensus 79 ------------------~~g-----------l~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 ------------------EVG-----------EDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp ------------------EBT-----------TTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred ------------------HhC-----------CCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 011 110 112 899999999999999999999 988765
Q ss_pred HHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE
Q 018040 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 290 ~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
.+.+ ....+.+|++++|+.+....|||+++|
T Consensus 115 ~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 115 TALR---AAETGHLVFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp HHHH---HHHTTCEEEEEECCSSHHHHHHHHHHT
T ss_pred HHHH---HHccCCEEEEEeCcchHHHHHHHHhhh
Confidence 4443 334588999999998855557876544
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-22 Score=203.13 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=113.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE 216 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~ 216 (362)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.|++|++. ..+..+.... .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~-g 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSW-G 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTT-S
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHc-C
Confidence 3489999999999999999999999999998874 53 01345556541 1222222111 0
Q ss_pred CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH-----HHHHH
Q 018040 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-----TDNLI 291 (362)
Q Consensus 217 ~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~-----~~~~i 291 (362)
.+.+ + +...++ .......+.+|||||+||+++||++..+|+++|+| ||++||.. .++.+
T Consensus 333 ~~~~---~-~~~~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i 396 (525)
T 1tf7_A 333 MDFE---E-MERQNL-----------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV 396 (525)
T ss_dssp CCHH---H-HHHTTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH
T ss_pred CCHH---H-HHhCCC-----------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH
Confidence 1111 1 112222 22233445678999999999999999999999999 99999998 88888
Q ss_pred HHHHHhhc-CCceEEEEecCh----------hhhhh-cCeEEEEeCCE
Q 018040 292 QHTLGQHF-SDCTVITIAHRI----------TSVID-SDMVLLLSYGL 327 (362)
Q Consensus 292 ~~~l~~~~-~~~tvi~itH~l----------~~~~~-~Dri~vl~~G~ 327 (362)
.++++... .+.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 397 ~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 397 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 88887654 589999999999 67776 99999999886
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-24 Score=192.21 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=117.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHH
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEI 222 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 222 (362)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.++ ..+++++||++|+. .++ ++++.....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~------ 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGL------ 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCC------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccc------
Confidence 78999999999999999999999999 999 99999887543 34678899999986 222 233321100
Q ss_pred HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH-HHHH---HhcCCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 018040 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV-CLAR---VLLKKSKVLVLDE--ATASVDTATDNLIQHTLG 296 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv-~iAr---al~~~p~illLDE--Pts~LD~~~~~~i~~~l~ 296 (362)
... ....+..+++.+..+|+|||+++ ++++ |++.+|+++|||| |+..+|+...+.+.+.++
T Consensus 67 -------~~~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 67 -------EPP------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp -------CCC------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred -------cCC------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 000 00122356777778999999998 5565 6899999999999 899999988878877776
Q ss_pred hhcCCceEE----EEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 297 QHFSDCTVI----TIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 297 ~~~~~~tvi----~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
. ..++| .++|+.+ ...+|||..+++|+|++..
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 3 23444 3449875 3447788888899998754
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=193.36 Aligned_cols=73 Identities=26% Similarity=0.301 Sum_probs=66.9
Q ss_pred CCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEe
Q 018040 252 NWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.+.+.. ++.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 6899999999999999999999999998865 3689999999987777799999986
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-23 Score=188.54 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=103.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+......|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 35899999999999999999999999999999999976 555444 3567899999996333348877
Q ss_pred hcCcCC---------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 210 NLDPLE---------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 210 nl~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
|+.+.. ....+.+.+.++.+ .... ......||+||+||+++ ++++.+|+++|||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l---------~~~~----~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNI---------VEGK----TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHH---------HTTC----CEEECCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHH---------HCCC----CeecccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 753210 11223333443321 1111 12235689999999988 6889999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh-hh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV-ID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~-~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
...|.. +.+. .+.||+++||+...+ .. ++++ ++|+ +++++.+
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 887764 2222 378999999974444 33 4444 6674 5666654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-21 Score=208.15 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=115.4
Q ss_pred cEEEEEEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HcCCCCCccEEEECCEeCCC
Q 018040 115 EVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL--------FRIVEPTAGLIAIDGIDISS 183 (362)
Q Consensus 115 ~i~~~~l~~~y~~---~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l--------~gl~~p~~G~I~i~g~~i~~ 183 (362)
.+.+++...-+-. +...+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4777765433311 124689999999999999999999999999999999 55554443221
Q ss_pred CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 184 IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 184 ~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
++++ +.+ +..+++.+.+ ...+|+|++++..+
T Consensus 702 ---------~~~~------------d~i--------------~~~ig~~d~l--------------~~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSIV------------DCI--------------LARVGAGDSQ--------------LKGVSTFMAEMLET 732 (934)
T ss_dssp ---------EECC------------SEE--------------EEECC-----------------------CHHHHHHHHH
T ss_pred ---------chHH------------HHH--------------HHhcCchhhH--------------HHhHhhhHHHHHHH
Confidence 0000 000 0001111110 11258888888888
Q ss_pred HHHh--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 018040 264 ARVL--LKKSKVLVLDEATASVDTATDNLI-QHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 264 Aral--~~~p~illLDEPts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+++ +.+|+++||||||+|+|+.....+ ...++.+. .++|+|++||+.+....||++..+++|++...++++++
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 8888 999999999999999999887776 55555543 37999999999887777999999999999877665554
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-21 Score=207.45 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=128.4
Q ss_pred CCCccHHHHHHHHHcC---------CCCCccEEEECCEeCCC---CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCC-
Q 018040 151 RTGSGKSTLIQTLFRI---------VEPTAGLIAIDGIDISS---IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEY- 217 (362)
Q Consensus 151 ~nGsGKSTLl~~l~gl---------~~p~~G~I~i~g~~i~~---~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~- 217 (362)
.+..||+++.+.+... +.|..|+|.++|++|.+ .+..++...+.-+||++.... + +...+....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 346 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPEQA 346 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSSHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchhhH
Confidence 3567899998887763 34567999999998876 344444444444455443221 1 111111110
Q ss_pred --C---HHHHHH---HHHHcCCChHHHhccccchhh-hccCCCCCChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHH
Q 018040 218 --A---DEEIWE---ALDKCQLGNEVRKNEGKLESR-VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTA 286 (362)
Q Consensus 218 --~---~~~~~~---~l~~~~l~~~~~~~~~~l~~~-~~~~g~~LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~ 286 (362)
. .+++.+ .+..+|+ +.. +++...+|||||||||+||+||.++| .+|||||||++||+.
T Consensus 347 ~i~~~i~~ei~~rl~~L~~vGL-----------~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~ 415 (842)
T 2vf7_A 347 IALQRMAADLVKRLDVLLHLGL-----------GYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPA 415 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-----------TTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-----------CcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHH
Confidence 0 011111 2333333 322 45556779999999999999999999 599999999999999
Q ss_pred HHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCEEEEecChhHHhhcCCcH
Q 018040 287 TDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSSS 344 (362)
Q Consensus 287 ~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~i~~~g~~~~l~~~~~~~ 344 (362)
..+.+.+.++.+. .|.|||+|+||++.+..||+|++| ++|+++..|+++++.+.+...
T Consensus 416 ~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~ 480 (842)
T 2vf7_A 416 DTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQ 480 (842)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhchHHH
Confidence 9999999998765 589999999999988779999999 799999999999998754433
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-21 Score=177.26 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=99.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-------TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
-|++||+++|+||||||||||+++|+|++.| ..|.+++++.+. .. ++++++++|+..+++.++.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996555 445788887542 11 2346777887777766888887
Q ss_pred CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh-------cCCCCEEEEeCCCCCCC
Q 018040 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL-------LKKSKVLVLDEATASVD 284 (362)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral-------~~~p~illLDEPts~LD 284 (362)
.+........ +++.+..++++ ..+|+++++||||+.+|
T Consensus 95 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 6533222111 11222222222 35899999999999999
Q ss_pred HH-------HH-----HHHHHHHHhhc--CCceEEEEecChh----hhhh-cCeEEEEeCC
Q 018040 285 TA-------TD-----NLIQHTLGQHF--SDCTVITIAHRIT----SVID-SDMVLLLSYG 326 (362)
Q Consensus 285 ~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~l~----~~~~-~Dri~vl~~G 326 (362)
+. .+ ..+.+.+.+.. .++|||++||... .+.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 21 24555555432 3799999999554 4777 9999999976
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-21 Score=206.12 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=109.9
Q ss_pred ccEEEEEEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEeCCCCCHHHH
Q 018040 114 GEVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 114 ~~i~~~~l~~~y~~---~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~~~~ 189 (362)
+.+++++. +++- ...++++|+||+ |++++|+||||||||||+|+|+|+.. +..|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hh
Confidence 45888877 4443 234689999999 99999999999999999999999874 6777652 1 11
Q ss_pred hcCcEEEcCCCCCCc-ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh-
Q 018040 190 RSRLSIIPQDPTMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL- 267 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral- 267 (362)
+..+++++| +|. .++.+|+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 345777776 343 255554321 1499999999999999
Q ss_pred -cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHhhcCCceEEEEecChhhhhhc
Q 018040 268 -LKKSKVLVLDEA---TASVDTATD-NLIQHTLGQHFSDCTVITIAHRITSVIDS 317 (362)
Q Consensus 268 -~~~p~illLDEP---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 317 (362)
+.+|+++||||| |++||+.+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 568888876 578999999998876544
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-21 Score=203.66 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=87.1
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEE
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+++...+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+++. .|.|||+|+||++++..||||++
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 577 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID 577 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 45556779999999999999999985 9999999999999999999999998865 58999999999999888999999
Q ss_pred E------eCCEEEEecChhHHhhcC
Q 018040 323 L------SYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 323 l------~~G~i~~~g~~~~l~~~~ 341 (362)
| ++|++++.|+++++.+.+
T Consensus 578 LgpgaG~~gG~iv~~G~~~e~~~~~ 602 (972)
T 2r6f_A 578 IGPGAGIHGGEVVAAGTPEEVMNDP 602 (972)
T ss_dssp ECSSSGGGCCSEEEEECTTTTTTCT
T ss_pred eCCCccCCCCEEEEecCHHHHHhhh
Confidence 9 799999999999987653
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=158.74 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=71.2
Q ss_pred ccCCCCCChhHHHHHHHH------HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCe
Q 018040 247 TENGENWSMGQRQLVCLA------RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iA------ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dr 319 (362)
...+.+||||||||++|| |||+.+|+++||||||++||+.+...+.+.+.+.. +++|||++||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 456788999999999876 99999999999999999999999999999998864 47899999999965445999
Q ss_pred EEEE--eCCE
Q 018040 320 VLLL--SYGL 327 (362)
Q Consensus 320 i~vl--~~G~ 327 (362)
+++| ++|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 5664
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-23 Score=213.74 Aligned_cols=189 Identities=11% Similarity=0.191 Sum_probs=119.3
Q ss_pred cEEEEEEEEEeCCCCCceeeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGL----------TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISS 183 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~i----------sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~ 183 (362)
.++++|+++.|+....++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999975433344444 366664 999999999999999999999988 79999999998621
Q ss_pred --C-CHHHHhcCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 184 --I-GLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 184 --~-~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
. ....+++.++|+||++.+++. |+++|+... ....+. .+..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~~~~-----------------~~~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNAIAG-----------------EGMGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHHHHC-----------------SSSCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHHhcC-----------------Cccccc---hH
Confidence 1 123567889999999988764 898887421 111100 000112 23
Q ss_pred HHHHHHHhcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHhh-c--CCceEEEEecChhhh--------hh-----c
Q 018040 260 LVCLARVLLKKSKVLVLDEA------TASVDTATDNLIQHTLGQH-F--SDCTVITIAHRITSV--------ID-----S 317 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEP------ts~LD~~~~~~i~~~l~~~-~--~~~tvi~itH~l~~~--------~~-----~ 317 (362)
++.++.+....|+++|+||| |++||+..+..+.+++++. . .+.++++++|+++.. .. .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 44455555678999999999 9999999999999999884 2 246889999998633 11 3
Q ss_pred CeEEEEeCCEEEEecChhHH
Q 018040 318 DMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l 337 (362)
..|+|+.++.+++.|+.+++
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCC
T ss_pred ceEEEecchhhcCcccHHHH
Confidence 56899999988888876543
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-23 Score=178.66 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=85.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCC---HHHHh-cCcE----EEcCCCCCCcccHHhhcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIG---LHDLR-SRLS----IIPQDPTMFEGSVHNNLD 212 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~l~~~tv~enl~ 212 (362)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ .+.+| +.++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999977665 55677 4688 899998876 221
Q ss_pred cCCCCCHHHHHHHHHHcCCChHHHh-ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 213 PLEEYADEEIWEALDKCQLGNEVRK-NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
... +. .+++.+++.. ++ ++|+.++|+ ||||||||++||||++++|++.
T Consensus 77 ----~~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CCh-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 111 11 5677888888 78 899999995 9999999999999999999873
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-21 Score=185.52 Aligned_cols=161 Identities=15% Similarity=0.095 Sum_probs=79.7
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI-VEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
+||+++|++. .++++++|+| +|+||||||||||++.|+|. ..|++| |.++|.++.. .. -++.+++++
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEe
Confidence 4788899754 5999999998 99999999999999999998 889999 8888877643 11 135689999
Q ss_pred CCCCCC-cccHHhhcCcCCCCCH-HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 198 QDPTMF-EGSVHNNLDPLEEYAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 198 Q~~~l~-~~tv~enl~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
|+..++ ..|+.|+..+...... +......+. +.+. .+.. ..++|||||||+.+|||++ +++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~----~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERY----LHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHH----HHHHTSSCCTTCCCCCCCE----EEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHH----HHHhCHHhhhhhhhhhhhh----eee
Confidence 987665 3488888765322111 111111111 0011 1111 2236999999999999986 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHhhc--CCceEEEEecChh
Q 018040 276 LDEATAS-VDTATDNLIQHTLGQHF--SDCTVITIAHRIT 312 (362)
Q Consensus 276 LDEPts~-LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~ 312 (362)
+||||++ ||+... +.++... .+.++|+.+||+.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999985 999864 3333332 3578899999984
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-21 Score=185.50 Aligned_cols=165 Identities=22% Similarity=0.141 Sum_probs=112.1
Q ss_pred eeeee-eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCc----cE-EEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 132 VLRGL-TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTA----GL-IAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 132 vL~~i-sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |+ |++++.+.. .++++++++|.+.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6666 68 899987641 135688899998887
Q ss_pred cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc-------CCCCEEEE
Q 018040 204 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL-------KKSKVLVL 276 (362)
Q Consensus 204 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~-------~~p~illL 276 (362)
..++.+|+.+..... |.+|+|++.++++++ .+|+++|+
T Consensus 193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 778888886543222 334555555555555 78999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 277 DEATASVDTAT------------DNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 277 DEPts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||||+++|+.. ...+...|.... .++|||+++|....... ++...+...|++++.+....+
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 99999999862 234444444432 47899999998765543 344566667777666554443
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-22 Score=176.61 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=100.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEE-------CCEeCC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-----EPTAGLIAI-------DGIDIS 182 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-----~p~~G~I~i-------~g~~i~ 182 (362)
.++++|++|+|+. +++++ |.+++|++++|+|+||||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 3789999999962 47888 889999999999999999999999999998 788887754 222221
Q ss_pred CCC-----------HHHHhcCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 183 SIG-----------LHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 183 ~~~-----------~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
+.+ .+.+++.+++++|+...++. .+..++.......+.++.+.+...++.. -.+..+.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----------~~v~nK~ 147 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV----------LVLLTKA 147 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE----------EEEEECG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe----------EEEEecc
Confidence 111 12233334444543322222 2222222211111223444444333221 1123344
Q ss_pred CCCChhHHHH-HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc
Q 018040 251 ENWSMGQRQL-VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 251 ~~LSgGqrQR-v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~ 299 (362)
..+|+||+|| +..+++++.+|+++++|||||++|......+.+.+.+..
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 4589999999 899999999999999999999999999999999887653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-23 Score=204.05 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=136.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcCcEEEcC-----CCCCCc
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQ-----DPTMFE 204 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~l~~ 204 (362)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++++| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3566665 7899999999999999999999999999998 899987775553 2 24678999999 788888
Q ss_pred ccHHhhcCcCCCC-------CHHHHHHHHHHcCCChH-------------HH----------------hccccchhhhcc
Q 018040 205 GSVHNNLDPLEEY-------ADEEIWEALDKCQLGNE-------------VR----------------KNEGKLESRVTE 248 (362)
Q Consensus 205 ~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~-------------~~----------------~~~~~l~~~~~~ 248 (362)
.+++.|+....+. +.+.++.+++.++.... ++ .++..+++.+++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 8999999764333 56666666766543111 11 134567778888
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHhhcCCceEEEEecChhh
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKV--LVLDEATASVDTA----T-----DNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~i--llLDEPts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
++..+|+| ||+++|++++.+|++ +|+||+|++||.. + +...++.+....+|+|.+.++|++..
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 88888999 999999999999999 9999999999965 2 23466777767789999999999863
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-21 Score=184.09 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=103.7
Q ss_pred EEEEEEeCCCCCceeeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHh
Q 018040 119 HGLQVRYAPHLPLVLRGLTC-------TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl-------~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r 190 (362)
..++++|.+...+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 46777775555567777776 77899999999999999999999999999987 56665433332 221 22
Q ss_pred cCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 191 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
...++++|...... . ++-.+ +|||||.++
T Consensus 168 ~~~~~v~q~~~~~~-----~------------------------------------------~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----T------------------------------------------LGFSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----B------------------------------------------SCHHH----HHHHHTTSC
T ss_pred ccccceeeeeeccc-----c------------------------------------------CCHHH----HHHHHhhhC
Confidence 33455555432110 0 01111 999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
|+++++|||| |.++.+.+.+. ...|+|+++++|+.+.+..+||+++|..
T Consensus 197 PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred cCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 9999999999 77765554443 3358999999999998866899887743
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-23 Score=182.52 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=107.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc---cHHhhcCcC--
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG---SVHNNLDPL-- 214 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~---tv~enl~~~-- 214 (362)
.++|++++|+||||||||||+++|+|++.| +++|++|++.+++. ++.++..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 48999999987742 676664321
Q ss_pred --CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH----HHHHHHHHHhcCCCCEEEEeCCCCC------
Q 018040 215 --EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ----RQLVCLARVLLKKSKVLVLDEATAS------ 282 (362)
Q Consensus 215 --~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq----rQRv~iAral~~~p~illLDEPts~------ 282 (362)
.....+.+.+.++.+++.+.+ ...+.++|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 123456667777666543322 22345678886 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHhh--cCCceEEEEecCh
Q 018040 283 -VDTATDNLIQHTLGQH--FSDCTVITIAHRI 311 (362)
Q Consensus 283 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~l 311 (362)
||+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999888888888754 3588999999984
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-20 Score=199.87 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=102.4
Q ss_pred cEEEEEEEEEe-----CCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRY-----APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y-----~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~ 189 (362)
.+.+++...-. +.+...+++|+||++++|++++|+||||||||||+++++++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 57776653221 11234689999999999999999999999999999999764211
Q ss_pred hcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
.+.-.++|++...+ .+.+++. ..+++.+. +......+|+||+|++.|+++ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--------------~~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--------------TRMGAADN-----------IYKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--------------HhCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-cc
Confidence 01112333322100 0001110 01111111 111224579999999999999 89
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHHhh-c-CCceEEEEecChhhhhhcCe
Q 018040 270 KSKVLVLDEATASVDTATDNLIQ-HTLGQH-F-SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~-~~l~~~-~-~~~tvi~itH~l~~~~~~Dr 319 (362)
+|+++||||||+|+|+.....+. ..++.+ . .++|+|++||+++.+..||+
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 99999999999999999887776 555554 2 48999999999887765543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-23 Score=202.09 Aligned_cols=175 Identities=12% Similarity=0.104 Sum_probs=125.5
Q ss_pred eeeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHcCCCCCc----cEEEEC----CEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 132 VLRGLTCTFLG--GMKTGIVGRTGSGKSTLIQTLFRIVEPTA----GLIAID----GIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 132 vL~~isl~i~~--Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~----G~I~i~----g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|+++ |.++ ..+..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 998873 5554 3444445 45999999988
Q ss_pred CCcccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc-CCCCEEEEeC-
Q 018040 202 MFEGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL-KKSKVLVLDE- 278 (362)
Q Consensus 202 l~~~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~-~~p~illLDE- 278 (362)
+|..|+++|+.+..... +.... .+|+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 88889999987643211 11000 12566678888888774 6899999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 279 --AT------ASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 279 --Pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|+ +++|+..+..+.+.+.+..+ +.++++++|. +.... +|++.++++ +++.+++++|.+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 65 58899988889888876533 7899999975 33333 676666654 455666666643
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-20 Score=176.91 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=107.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHH--hcCcEEEcCCCCCCcc-cHHhhcCcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDL--RSRLSIIPQDPTMFEG-SVHNNLDPL 214 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~l~~~-tv~enl~~~ 214 (362)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+..... ..+ |..++|++|++.+++. ++++|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999865431 222 4569999999987764 788887421
Q ss_pred CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHH
Q 018040 215 EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 215 ~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~LD~~~~~~i~ 292 (362)
.. .+....+-..++.++ .....++..++||++||||++.+|+ ++.|| |+++. .+.
T Consensus 181 -----------~~-~~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~ 237 (304)
T 1rj9_A 181 -----------KA-RGYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGL 237 (304)
T ss_dssp -----------HH-HTCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHH
T ss_pred -----------Hh-CCCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHH
Confidence 00 011100000011010 0001135566999999999999999 44555 44443 344
Q ss_pred HHHHhhc--CCceEEEEecChhhhhh----------cCeEEEEeCCE
Q 018040 293 HTLGQHF--SDCTVITIAHRITSVID----------SDMVLLLSYGL 327 (362)
Q Consensus 293 ~~l~~~~--~~~tvi~itH~l~~~~~----------~Dri~vl~~G~ 327 (362)
+.++... .+.|+|++||+...... --.|.++-.|+
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 4444332 27899999998554321 13567777775
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-20 Score=168.03 Aligned_cols=164 Identities=12% Similarity=0.048 Sum_probs=112.7
Q ss_pred ceeeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc---CcEEEcCCCCCCccc
Q 018040 131 LVLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS---RLSIIPQDPTMFEGS 206 (362)
Q Consensus 131 ~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~---~i~~v~Q~~~l~~~t 206 (362)
+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+. +...++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 46888887 8999999999999999999999999998888888888765443 2333222 24444443211
Q ss_pred HHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCCC-
Q 018040 207 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASV- 283 (362)
Q Consensus 207 v~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~L- 283 (362)
+++......... .+ + .... ...|.++.++...+.+...+|+ ++++||||+.+
T Consensus 83 --~~~~~~~~~~~~--------~~--------~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMKE--------KE--------D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEeccccc--------cC--------c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 111111111000 00 0 0000 1238899998888888778999 99999999888
Q ss_pred -CHHHHHHHHHHHHhhc--CCceEEEEecCh--------hhhhh-cCeEEEEeCC
Q 018040 284 -DTATDNLIQHTLGQHF--SDCTVITIAHRI--------TSVID-SDMVLLLSYG 326 (362)
Q Consensus 284 -D~~~~~~i~~~l~~~~--~~~tvi~itH~l--------~~~~~-~Dri~vl~~G 326 (362)
|+.....+.+.+++.. .+.|+|+++|+. ..+.. ||+|++|+..
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988888888887653 479999999998 45766 9999999864
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-20 Score=184.24 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.|.++|++++|++. .+++++||+| +|+|+||||||||+++|+|...|..| .+|.++...+ ...+..+
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 458999999999754 5999999998 99999999999999999999886655 2333221111 1123468
Q ss_pred EEEcCCCCCC-cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++++|++.++ ..|+.||+.+.........++.+. +.+. . .++.+++||++||||++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~-----~~i~---~-----------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI-----DYID---S-----------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHHHH-----HHHH---H-----------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHHHH-----HHHH---H-----------HHHHHHHHHHHHHHHhccCCC
Confidence 9999988776 458999987643322111111110 1111 1 135677889999999999999
Q ss_pred ---EEEEeCCC-CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 273 ---VLVLDEAT-ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 273 ---illLDEPt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
+|++|||| .+||+... .+++ .+..+.++|+|.|..+.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 99999999 69998763 2333 333467888888876643
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-22 Score=178.88 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=114.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE-------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSV 207 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 207 (362)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+.+++..++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999886 78887 588887777777787765 78999998899
Q ss_pred HhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH-HhcCCCCEEEEeCCCCCCCHH
Q 018040 208 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR-VLLKKSKVLVLDEATASVDTA 286 (362)
Q Consensus 208 ~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr-al~~~p~illLDEPts~LD~~ 286 (362)
.+|+ +. .++++++++++.....- .+..+.++++.... ++ .|| +++.+|++++|||||+++|.+
T Consensus 77 ~~n~-~g--~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YG--TSKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EE--EEHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CC--CCHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 9998 32 25667777776422111 01123344433211 12 567 889999999999999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 287 TDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 287 ~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
+++.|.+.|....++ +.++| +. ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999988765433 24566 33 56999988864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-19 Score=163.94 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=102.6
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cH----Hh
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SV----HN 209 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv----~e 209 (362)
.-..++|++++|+||||||||||+++|+|+++| ..|+|.+.+.+... ..++.++|+||++..|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346889999999999999999999999999986 68999988866432 235679999999877754 44 45
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~ 289 (362)
|+.+.... .|-.+++ ++.++..++++||| ||+.+..
T Consensus 86 ~~~~~~~~------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 86 HAEVFGNY------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEEETTEE------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHHhcc------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 54332110 0000111 23344457999999 9999999
Q ss_pred HHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 290 ~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
.+.+.+. ++.||+++||+++.+.. |+ +..| .++++++..
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9998875 57899999999998876 43 6667 577777754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-18 Score=148.50 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=69.9
Q ss_pred CCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE-
Q 018040 249 NGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL- 323 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl- 323 (362)
+...||||||||++|||+++ ++|+++||||||++||+.+...+.+.+++..++.++|+|||+......||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34569999999999999996 5579999999999999999999999999887778999999999887779999855
Q ss_pred -eCCE
Q 018040 324 -SYGL 327 (362)
Q Consensus 324 -~~G~ 327 (362)
++|.
T Consensus 141 ~~~g~ 145 (173)
T 3kta_B 141 MRDGV 145 (173)
T ss_dssp EETTE
T ss_pred ecCCE
Confidence 5674
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-19 Score=188.13 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=98.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSV 207 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv 207 (362)
..+++|++|+ ++|++++|+||||||||||+|+|+|+..+ ..|. .+ +. -+..+++++| +|. .++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---pa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---PA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---SS--SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---ch--hcccceeHHH---HHhhCCH
Confidence 4689999999 99999999999999999999999997432 1221 11 00 0123444444 222 133
Q ss_pred HhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHH
Q 018040 208 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287 (362)
Q Consensus 208 ~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~ 287 (362)
.+|+.. ++ ..+|+++++ ++.+...+.+|+++|||||++|+|+..
T Consensus 660 ~d~l~~---------------------------~~--------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 660 ADDLAS---------------------------GR--------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred HHHHHh---------------------------hh--------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 333210 01 234777765 444445689999999999999999865
Q ss_pred HHHH-HHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEE
Q 018040 288 DNLI-QHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEE 330 (362)
Q Consensus 288 ~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~ 330 (362)
...+ ...++.+. .++|+|++||+.+....||++..+++|++..
T Consensus 704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 704 GLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 5544 55665543 3789999999998776688776666666543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-20 Score=180.14 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=112.8
Q ss_pred EEEEEEEE---eCCCCCcee---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC
Q 018040 117 DIHGLQVR---YAPHLPLVL---------RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 184 (362)
Q Consensus 117 ~~~~l~~~---y~~~~~~vL---------~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~ 184 (362)
+|++++|+ |++..+++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.. ++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 78888888 753222355 99999999999999999999999999999999999999999999852 33
Q ss_pred CHHHHhcCcEEEc-CCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 185 GLHDLRSRLSIIP-QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 185 ~~~~~r~~i~~v~-Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
.....++.+++++ |++.+ + ++++..+|-.|
T Consensus 215 ~~~~~~~~v~~v~~q~~~~--------------------------------------~-----------~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKE--------------------------------------E-----------ENAPVTAATLL 245 (361)
T ss_dssp CCTTCSSEEEEECC-----------------------------------------------------------CCHHHHH
T ss_pred CccccCCEEEEeecCcccc--------------------------------------c-----------cccccCHHHHH
Confidence 3334566789998 65431 0 12344578888
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCC-ceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD-CTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
++++..+|+.+++|||.. ..+.+.+.....| .|++..+|..+....+||+..|..|.
T Consensus 246 ~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 246 RSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp HHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999999986 2334455554444 57899999977555588888887763
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-19 Score=172.96 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=111.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+++++ +++|++. + |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++........++.
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 355666 7888653 4 9999999999999 9999999999999999999984 34444433322334567
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCCCCCHH------------HHHHHHHHc-CCChHHHhccccchhh-------hccCCC
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLEEYADE------------EIWEALDKC-QLGNEVRKNEGKLESR-------VTENGE 251 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~------------~~~~~l~~~-~l~~~~~~~~~~l~~~-------~~~~g~ 251 (362)
++|++|++.++. .|+.+|+.+....... ...+.+... ++.. .++...++. +...+.
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r---~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRR---VLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCC---CCCCSCC--CCEEEEEECCCC-
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhh---hhcccccccccEEEEEEeCCCC
Confidence 999999998874 5999999876543321 122222222 1110 000001111 122334
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-hc-CCceEEEEecC
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ-HF-SDCTVITIAHR 310 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~ 310 (362)
.|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +. .|.+|+.++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 566665 7999999999999999999999998877788888875 43 57888888864
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-17 Score=156.63 Aligned_cols=151 Identities=13% Similarity=0.154 Sum_probs=97.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcC-cCCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD-PLEEY 217 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~-~~~~~ 217 (362)
.+++|++++|+||||||||||++.+++.+. .|.+. .|.+... ...+.|+..+... ..+..++. .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998654 56663 3543211 2356777655422 11211111 11112
Q ss_pred CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC--CCCHHHH---HHHH
Q 018040 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA--SVDTATD---NLIQ 292 (362)
Q Consensus 218 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts--~LD~~~~---~~i~ 292 (362)
......++++.+.+. ...+.....||+||+|++ ++++.+|+++|+||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 233333344444322 223455677999998865 68889999999999999 9997544 6677
Q ss_pred HHHHhhc--CCceEEEEecChhhh
Q 018040 293 HTLGQHF--SDCTVITIAHRITSV 314 (362)
Q Consensus 293 ~~l~~~~--~~~tvi~itH~l~~~ 314 (362)
+.|.... .++|||+++|+....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7776653 489999999987654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=141.50 Aligned_cols=148 Identities=18% Similarity=0.084 Sum_probs=93.9
Q ss_pred eeeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 132 VLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 132 vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
.|+.+.. -+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+...+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~--------------------- 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL--------------------- 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH---------------------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH---------------------
Confidence 4555554 588999999999999999999999999 3333444443321 0111111
Q ss_pred cCcCCCCCHHHHHHHHHHcCCCh--HHHhccccchhhhccCCCCCChh--HHHHHHHHHHhcCC-CCEEEEeCCCCCCCH
Q 018040 211 LDPLEEYADEEIWEALDKCQLGN--EVRKNEGKLESRVTENGENWSMG--QRQLVCLARVLLKK-SKVLVLDEATASVDT 285 (362)
Q Consensus 211 l~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~l~~~~~~~g~~LSgG--qrQRv~iAral~~~-p~illLDEPts~LD~ 285 (362)
.+.++..++.. ..+.. .+ ..+|++ ++|+++.+|+++.+ |+++|+||||+.+|+
T Consensus 63 ------------~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 63 ------------VQMAETRGLNPEEALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp ------------HHHHHTTTCCHHHHHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred ------------HHHHHhcCCChHHHhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 11111111110 00110 00 123455 36789999999986 999999999999997
Q ss_pred HHH--------HHHHHHHHhhc--CCceEEEEecChh-------------hhhh-cCeEEEEeCC
Q 018040 286 ATD--------NLIQHTLGQHF--SDCTVITIAHRIT-------------SVID-SDMVLLLSYG 326 (362)
Q Consensus 286 ~~~--------~~i~~~l~~~~--~~~tvi~itH~l~-------------~~~~-~Dri~vl~~G 326 (362)
... ..+.+.|++.. .++|+|+++|... .+.. ||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 33444455543 3789999999865 3555 9999999864
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-19 Score=154.23 Aligned_cols=150 Identities=14% Similarity=0.025 Sum_probs=92.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 218 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 218 (362)
.+++|++++|+||||||||||+++|+|. |..|.|.++|.++.... ..++.++|++|++. ...++.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 67899999987652211 01234677777654 2346777763210
Q ss_pred HHHHHHHHHHcCCChHHHhcc--ccchhhh--ccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 018040 219 DEEIWEALDKCQLGNEVRKNE--GKLESRV--TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 294 (362)
Q Consensus 219 ~~~~~~~l~~~~l~~~~~~~~--~~l~~~~--~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~ 294 (362)
.... ..+....++... ..++... +..+..+|+|++||+++||++.++|+++ +|+...+.+.+.
T Consensus 77 ----~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 77 ----GRYA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp ----HHHH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred ----HHHh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 0011 111100000000 0111111 2334568999999999999999999876 588777777776
Q ss_pred HHhhcCCceEEEEec
Q 018040 295 LGQHFSDCTVITIAH 309 (362)
Q Consensus 295 l~~~~~~~tvi~itH 309 (362)
+........+++.|+
T Consensus 144 ~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 144 FADLGAFEHHVLPVS 158 (191)
T ss_dssp TTCCGGGGGGEEECT
T ss_pred HhccCcccccEEECC
Confidence 654432123344444
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-18 Score=165.45 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=105.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC--------CCCccEEEECCEeCCCCC---------------HHHHhcCcEEE---c
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV--------EPTAGLIAIDGIDISSIG---------------LHDLRSRLSII---P 197 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~--------~p~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 197 (362)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 789999999999987653 23566678888 6
Q ss_pred CCCCC-CcccHHhhcCcCCCCCHHHHHHHH-------HHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 198 QDPTM-FEGSVHNNLDPLEEYADEEIWEAL-------DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 198 Q~~~l-~~~tv~enl~~~~~~~~~~~~~~l-------~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|++.+ ++.++.||..+... ..+.+.+ ....+...+.. . ++.....+ ..+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~l~~-v-d~~~~~~~-~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGVIAL-V-DAVHADEQ-MNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEEEEE-E-ETTTHHHH-HHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCEEEE-E-EHHHHHHH-HhhchHHHHHHHhCCEEEEE
Confidence 87764 46689999865421 1111111 11111110000 0 00000000 11589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 312 (362)
+|+++ ||| +.+.+.+++..++.||+++||+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 998 667777777667899999999643
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=144.34 Aligned_cols=146 Identities=19% Similarity=0.204 Sum_probs=86.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc--CCCC-----CccEEEECCEeCCCC-CHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEP-----TAGLIAIDGIDISSI-GLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p-----~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
-+++|++++|+||||||||||++.|++ +.+| ..|.+++++.+.... ....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 488999999999999999999999999 5665 578888887652110 112233345554432 3344
Q ss_pred cCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc--CCCCEEEEeCCCCCCCHH--
Q 018040 211 LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDTA-- 286 (362)
Q Consensus 211 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~--~~p~illLDEPts~LD~~-- 286 (362)
+.+....+.++..+ .+.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQ-----------------------------------LLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHH-----------------------------------HHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 43222222111111 111122222 589999999999999975
Q ss_pred -----HH-----HHHHHHHHhhc--CCceEEEEecChhh-------------------hh-hcCeEEEEeCC
Q 018040 287 -----TD-----NLIQHTLGQHF--SDCTVITIAHRITS-------------------VI-DSDMVLLLSYG 326 (362)
Q Consensus 287 -----~~-----~~i~~~l~~~~--~~~tvi~itH~l~~-------------------~~-~~Dri~vl~~G 326 (362)
.+ ..+...+.+.. .++|||+++|.... +. .||++++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23334444332 37899999996543 23 38999999975
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-20 Score=162.17 Aligned_cols=169 Identities=15% Similarity=-0.007 Sum_probs=105.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC-cccHHhhcCcCCCCCHHH
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGSVHNNLDPLEEYADEE 221 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~ 221 (362)
|++++|+||||||||||+++|++ |.+|++.++|.++.. ...+++++|....+ ..++++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH------MVVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT------TCCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh------hhccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999998 678999998865422 12466777765332 23666665321
Q ss_pred HHHHHHHcCCChHHHhccccchhhhccCCCCC--ChhHHHHHHHHH------HhcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 018040 222 IWEALDKCQLGNEVRKNEGKLESRVTENGENW--SMGQRQLVCLAR------VLLKKSKVLVLDEATASVDTATDNLIQH 293 (362)
Q Consensus 222 ~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L--SgGqrQRv~iAr------al~~~p~illLDEPts~LD~~~~~~i~~ 293 (362)
...... .+....++.. .. .... +....+ |+||+|++.++. +++.+|+...+|+ ++|+...+. .+
T Consensus 66 ~~~~~~-~~~~~ild~~-~~-~~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 66 TVNFLL-AQNDVVLDYI-AF-PDEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp HHHHHH-TTCEEEEESC-CC-HHHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred HHHHHh-cCCcEEEeec-cC-HHHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 111111 1100000000 00 0000 000123 888888888888 8888888888884 899987777 77
Q ss_pred HHHhhc-CCceEEEEecC-hhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 294 TLGQHF-SDCTVITIAHR-ITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 294 ~l~~~~-~~~tvi~itH~-l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
.+.... .+.++|.+||. ++.++. ||+|+ ++|+++..|+++-+
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 776654 35799999999 999988 99998 99999999988765
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-19 Score=171.51 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=112.5
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhcC
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDLRSR 192 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~ 192 (362)
++++++++|+.. .+|+++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.++.... ....+++
T Consensus 31 e~~~~~~~~~~~--~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 31 ESRRADHRAAVR--DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp TCSSHHHHHHHH--HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eeCCcccccChH--HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 334455566432 4899999999999999999999999999999999999999999999998875322 1234677
Q ss_pred cEEEcCCCCCCcc----------c---HHhhc--------C------cCCCCCHHHHHHHHH-------------HcCCC
Q 018040 193 LSIIPQDPTMFEG----------S---VHNNL--------D------PLEEYADEEIWEALD-------------KCQLG 232 (362)
Q Consensus 193 i~~v~Q~~~l~~~----------t---v~enl--------~------~~~~~~~~~~~~~l~-------------~~~l~ 232 (362)
+++++|++.+|.. + +++.+ . .+-...+..+.+.++ .-.+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 9999999987741 1 11111 0 000001111100000 00011
Q ss_pred hHHHhccccch-hhhcc-CCCCCChhHHHHHHHHHHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 233 NEVRKNEGKLE-SRVTE-NGENWSMGQRQLVCLARVLLK------KSKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 233 ~~~~~~~~~l~-~~~~~-~g~~LSgGqrQRv~iAral~~------~p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
..+...+.-+- +.... ....+|+|++|++..|++++. +|+++. +|++|......+.+.+.+.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 11111111000 11110 113468999999999999998 688876 9999999999888888764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-17 Score=154.34 Aligned_cols=121 Identities=10% Similarity=0.009 Sum_probs=86.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcC-------
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL------- 214 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~------- 214 (362)
++.+++|+|++|||||||.+.|.+++.+. | . . ++.+.+|+||.++++.+.++|+.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46799999999999999999999999763 2 0 1 3445666999999998988887421
Q ss_pred ------CCCCHHHHHHHHHHcCCChHHHhccccchh------hhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 215 ------EEYADEEIWEALDKCQLGNEVRKNEGKLES------RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 215 ------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~------~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
...+.+.+.+ ++..++.+++| .+...+.++||||+||+++|++..-+|+|+|+|||+++
T Consensus 94 ~~~g~p~a~d~~~l~~---------~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ 164 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQE---------VLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLG 164 (290)
T ss_dssp SSSCSTTSBCHHHHHH---------HHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTT
T ss_pred hhccCcchhHHHHHHH---------HHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCcccc
Confidence 1122333333 34444555443 24556788999999999998333339999999999999
Q ss_pred CCHHH
Q 018040 283 VDTAT 287 (362)
Q Consensus 283 LD~~~ 287 (362)
+|+..
T Consensus 165 ld~~~ 169 (290)
T 1odf_A 165 FNPIL 169 (290)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 99853
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-17 Score=162.05 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=100.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHH--HhcCcEEEcCCCCCCc-c
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHD--LRSRLSIIPQDPTMFE-G 205 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~l~~-~ 205 (362)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ... .|++++|++|++.+++ .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36789999999999999999999999999999999999999999887764321 122 3667999999987664 4
Q ss_pred cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC-CC-CEEEEeCCCCCC
Q 018040 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK-KS-KVLVLDEATASV 283 (362)
Q Consensus 206 tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~-~p-~illLDEPts~L 283 (362)
++++|+.+......+ .-.++.+|....-. +|-.-.+|++.++|++.. .| .++|..+|+++.
T Consensus 363 tV~e~l~~a~~~~~D--vVLIDTaGrl~~~~---------------~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKARNID--VLIADTAGRLQNKS---------------HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHTTCS--EEEECCCCSCCCHH---------------HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHhcCCC--EEEEeCCCccchhh---------------hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 888887532100000 00011112111000 011123588999998754 46 355555588886
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEec
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAH 309 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH 309 (362)
|.... .+.+.+ .-+.|.+++||
T Consensus 426 ~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 426 NAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp HHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred HHHHH---HHHHHh-hcCCCEEEEEc
Confidence 54421 222222 23679999999
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-15 Score=142.59 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=79.7
Q ss_pred EEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC-cccHHhhcCcCCCCCHHHHH
Q 018040 146 TGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGSVHNNLDPLEEYADEEIW 223 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~ 223 (362)
+.|+||+|+||||+++++++ ++.|+.|++.++|.+..... ..+..+++++|.+.+. ..+- ........+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 110 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD------MGNNDRIVIQ 110 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh------cCCcchHHHH
Confidence 89999999999999999999 89999999999998764322 2256789999987542 1110 0011111233
Q ss_pred HHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCce
Q 018040 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCT 303 (362)
Q Consensus 224 ~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~t 303 (362)
+.++.+.... .++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.+..++++
T Consensus 111 ~~i~~~~~~~-------~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 111 ELLKEVAQME-------QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp HHHHHHTTTT-------C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred HHHHHHHHhc-------cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 3333321110 111111 3566 778999999999999 999999999999988767889
Q ss_pred EEEEecChhhh
Q 018040 304 VITIAHRITSV 314 (362)
Q Consensus 304 vi~itH~l~~~ 314 (362)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999998654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-17 Score=146.99 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=98.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcC-----
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL----- 214 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~----- 214 (362)
.++|++++|+||||||||||+++|+|+++|. | ..+++|+++...+..+..+|+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999875 3 135666666655555544444211
Q ss_pred -CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH-HHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 018040 215 -EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA-RVLLKKSKVLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 215 -~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA-ral~~~p~illLDEPts~LD~~~~~~i~ 292 (362)
.......+.+.+..... ...++....+++..+|+||+||+++| ++++.++.++++|||.-
T Consensus 80 ~~~~~~~~~~~~l~~l~~-------~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~----------- 141 (208)
T 3c8u_A 80 PETFDFEGFQRLCHALKH-------QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW----------- 141 (208)
T ss_dssp GGGBCHHHHHHHHHHHHH-------CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------
T ss_pred CchhhHHHHHHHHHHHhc-------CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------
Confidence 01222333333322110 12355566778888999999999998 88888888888888831
Q ss_pred HHHHhhcCCceEEEEecChhh-hhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 293 HTLGQHFSDCTVITIAHRITS-VID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 293 ~~l~~~~~~~tvi~itH~l~~-~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
..+... -..++++.+..+. +.+ +.|. ++.|. +.+++..
T Consensus 142 ~~l~~~--~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~ 181 (208)
T 3c8u_A 142 RDLTAI--WDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVA 181 (208)
T ss_dssp GGGGGT--CSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHH
T ss_pred HHHHHh--cCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHH
Confidence 111121 1377888888776 333 5552 34454 4555543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-15 Score=143.01 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=67.0
Q ss_pred CCCCChhHHHHH------HHHHHhcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE
Q 018040 250 GENWSMGQRQLV------CLARVLLKK-SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 250 g~~LSgGqrQRv------~iAral~~~-p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
...|||||+||+ ++|||++.+ |+++||||||++||+.+...+.+.+.+...+.+||++||+++....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 358999999988 667999999 9999999999999999999999999886556799999999875445999999
Q ss_pred Ee
Q 018040 323 LS 324 (362)
Q Consensus 323 l~ 324 (362)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-17 Score=149.31 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=95.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhcCc----
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDP---- 213 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~---- 213 (362)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++. ++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988775431 1233446667777766654 77776632
Q ss_pred -------CCC--CCHHHHHHHHHHcCCC--hHHHhcccc-chhhhccCCCCCChhHHHHHHHHHHh-cCCCCEEEEe---
Q 018040 214 -------LEE--YADEEIWEALDKCQLG--NEVRKNEGK-LESRVTENGENWSMGQRQLVCLARVL-LKKSKVLVLD--- 277 (362)
Q Consensus 214 -------~~~--~~~~~~~~~l~~~~l~--~~~~~~~~~-l~~~~~~~g~~LSgGqrQRv~iAral-~~~p~illLD--- 277 (362)
... ....+........... -+++..+.. ++....++...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 001 1122221111101110 000000000 12223445567898 66 788 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHhhc
Q 018040 278 -EATASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 278 -EPts~LD~~~~~~i~~~l~~~~ 299 (362)
|||+++|+.+++.+.+.+....
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999988887653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-17 Score=138.42 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=70.2
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcC
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQ 198 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 198 (362)
++++++|++. .+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++... ...+ .+++|
T Consensus 11 ~~~~~~~g~~--~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGKK--FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHHH--HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHHH--HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 3456677542 5899999999999999999999999999999999999 9999999999876421 1111 28999
Q ss_pred CCCCCcccHHhhcC
Q 018040 199 DPTMFEGSVHNNLD 212 (362)
Q Consensus 199 ~~~l~~~tv~enl~ 212 (362)
++.+|..|+.+|+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888668888874
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-16 Score=153.20 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=106.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH----HHhc--CcEEEcCCCCCCcc-cHHhhcC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH----DLRS--RLSIIPQDPTMFEG-SVHNNLD 212 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~----~~r~--~i~~v~Q~~~l~~~-tv~enl~ 212 (362)
.++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++ .+.+++|+..+++. ++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 368999999999999999999999999999999999999998765532 2333 35699999888764 8888874
Q ss_pred cCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 018040 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~ 292 (362)
.. ... +.+.. -+|+. +.. ..-..=..+.-.++|++..++++++||.++. .| +.
T Consensus 206 ~~-----------~~~-~~d~v------liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------~~ 258 (328)
T 3e70_C 206 HA-----------KAR-GIDVV------LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------IV 258 (328)
T ss_dssp HH-----------HHH-TCSEE------EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------HH
T ss_pred HH-----------Hhc-cchhh------HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------HH
Confidence 21 000 00000 01110 000 0001123455569999999999999996665 32 22
Q ss_pred HHHHhh--cCCceEEEEecChhh---------hhh-cCeEEEEeCCEEE
Q 018040 293 HTLGQH--FSDCTVITIAHRITS---------VID-SDMVLLLSYGLIE 329 (362)
Q Consensus 293 ~~l~~~--~~~~tvi~itH~l~~---------~~~-~Dri~vl~~G~i~ 329 (362)
+.++.. ..+.|+|++||--.. +.. .-.|.++..|+-+
T Consensus 259 ~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 333322 237899999994332 122 4578888888754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-15 Score=144.81 Aligned_cols=147 Identities=19% Similarity=0.196 Sum_probs=91.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHHcCCCCCcc-----EEEECCEeCCC-CCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQ--TLFRIVEPTAG-----LIAIDGIDISS-IGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~--~l~gl~~p~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
-|++|++++|+||||||||||++ ++.++.+++.| .+++++.+... .....+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 48899999999999999999999 44677776544 78888865311 111223344555443 45555
Q ss_pred cCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHH
Q 018040 211 LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL--LKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 211 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral--~~~p~illLDEPts~LD~~~~ 288 (362)
+.+......+. +.+.+.-++.+ -.+|+++++|||++.+|+...
T Consensus 247 i~~~~~~~~~~-----------------------------------~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADH-----------------------------------QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHH-----------------------------------HHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHH-----------------------------------HHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 54332222111 11222222222 247999999999999997432
Q ss_pred ------------HHHHHHHHhhc--CCceEEEEecCh-------------------hhhhh-cCeEEEEeCCE
Q 018040 289 ------------NLIQHTLGQHF--SDCTVITIAHRI-------------------TSVID-SDMVLLLSYGL 327 (362)
Q Consensus 289 ------------~~i~~~l~~~~--~~~tvi~itH~l-------------------~~~~~-~Dri~vl~~G~ 327 (362)
..+.+.|+++. .+.|||+++|.. ..+.+ +|.+++|+.++
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 44556665543 379999999982 22355 89999999763
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-15 Score=145.95 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=77.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEEC-CEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHH
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAID-GIDISSIGLHDLRSRLSIIPQDPTMFEG-SVH 208 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~ 208 (362)
-++++++. .+|++++|+||||||||||+++|+|+.+ |..|+|.++ |.+.. ...++.++++||++.+++. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46666664 4799999999999999999999999999 999999987 75542 1234579999999988765 888
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
++... ....+++.+. ..+.+.. .++....+....+|| ||+||++||+++
T Consensus 280 e~~l~--~l~~~e~~~~-----~~e~l~~--~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQG-----FVEFHDY--LGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCC--CCCHHHHHHT-----SGGGGGG--TTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhhc--CCCHHHHHHH-----HHHHHHH--cCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 86322 2333333221 1111111 123344455667789 999999999986
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-17 Score=164.78 Aligned_cols=127 Identities=18% Similarity=0.081 Sum_probs=89.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHhcCcEEEc---------C
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHDLRSRLSIIP---------Q 198 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~v~---------Q 198 (362)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 378999999999999999999999999999999999988776321 1112344566655 8
Q ss_pred CCCCC--c-----ccHHhhcCcC----------CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 199 DPTMF--E-----GSVHNNLDPL----------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 199 ~~~l~--~-----~tv~enl~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+|.++ . .|+.+++... ...+.....+.+..+++.... . ..+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~-----------~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--I-----------SSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--H-----------HHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--H-----------HHHHHHHHHHH-
Confidence 88753 2 3777776431 011122334456667765432 1 23479999999
Q ss_pred HHHHHhcCCCCEEE
Q 018040 262 CLARVLLKKSKVLV 275 (362)
Q Consensus 262 ~iAral~~~p~ill 275 (362)
|||+|+.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999976
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-17 Score=167.51 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=109.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~e 209 (362)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+. ...++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46789999999999999999999999999999999999999999998865222211 234667776544111 14444
Q ss_pred hcCc----------CCCCCHHHHHHHHHHcCCC-------------hHHHhcc---ccchhhh----c---cCCCCCChh
Q 018040 210 NLDP----------LEEYADEEIWEALDKCQLG-------------NEVRKNE---GKLESRV----T---ENGENWSMG 256 (362)
Q Consensus 210 nl~~----------~~~~~~~~~~~~l~~~~l~-------------~~~~~~~---~~l~~~~----~---~~g~~LSgG 256 (362)
++.. ..+....+...+++.+.-. +.+.++. .++...+ . .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 3311 1122233344444433110 1111111 1111111 1 123357999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEE--EecChhhhhh-cC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVIT--IAHRITSVID-SD 318 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~--itH~l~~~~~-~D 318 (362)
|+||.++|. + | |+|||+...+.+.+.+.++. .++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 99999988776666666554 4688875 8999998876 64
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-15 Score=130.08 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=74.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE 216 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~ 216 (362)
+|.+++|+.++|+||||+|||||++++++.+.|.+|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 45667899999999999999999999999987666521 0110 111110
Q ss_pred CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 018040 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNLIQHTL 295 (362)
Q Consensus 217 ~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts-~LD~~~~~~i~~~l 295 (362)
+.+......... . -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 80 ---~~~~~~~~~~~~----------------------~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 80 ---FRLKHLMDEGKD----------------------T--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ---HHHHHHHHHTCC----------------------S--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ---HHHHHHhcCchH----------------------H--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 011111110000 0 0112234899999999995 89999999999998
Q ss_pred Hhhc-CCceEEEEecChh
Q 018040 296 GQHF-SDCTVITIAHRIT 312 (362)
Q Consensus 296 ~~~~-~~~tvi~itH~l~ 312 (362)
.... +++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 7654 6899999999764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-14 Score=137.97 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=78.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHh-cCcEEEcCCCCCC------cccHH
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLR-SRLSIIPQDPTMF------EGSVH 208 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~l~------~~tv~ 208 (362)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ +|++++... ...+ +.+||++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 34569999999999999999999999 99999999999 998876543 2222 3699999999653 3477
Q ss_pred hhc--CcC---------CC-----CCHHHHHHHHHHcCCCh-HHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 209 NNL--DPL---------EE-----YADEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 209 enl--~~~---------~~-----~~~~~~~~~l~~~~l~~-~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+|+ .+. .. .....+.++++.+++.+ ..+..+.. |||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~-----------ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKI-----------IKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH-----------TTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH-----------HHHHHHHHHHHhc
Confidence 777 221 11 12346788899998875 44444332 6998888999987
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-14 Score=121.23 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=68.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999876 46 555544322100
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~ 289 (362)
+++.+|++|++|||++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2356799999999998 6665588
Q ss_pred HHHHHHHhhc-CCce-EEEEecC
Q 018040 290 LIQHTLGQHF-SDCT-VITIAHR 310 (362)
Q Consensus 290 ~i~~~l~~~~-~~~t-vi~itH~ 310 (362)
.+.+.+.... ++++ +|++||.
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 8888887654 4677 8888884
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-16 Score=147.93 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=102.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC-CCCc-ccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-TMFE-GSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~-~tv~ 208 (362)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++......+.++.+++++|.+ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3789999999999 999999999999999999999887 79999998886655555567789999986 3343 3677
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC-------
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA------- 281 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts------- 281 (362)
|++.......... + .. ........+. .+|||||+||+.|++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r~~~--~-~~--~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--E-TG--ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC--------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--c-ch--HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 8886532211110 0 00 1111222222 236999999999999999999985 99974
Q ss_pred -----CCCHHHHHHHHHHHH
Q 018040 282 -----SVDTATDNLIQHTLG 296 (362)
Q Consensus 282 -----~LD~~~~~~i~~~l~ 296 (362)
--|...+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 235666677766553
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-14 Score=138.87 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=92.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcC
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 212 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~ 212 (362)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+... +...+++++++.. ...++.++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 579999999999999999999999999999999843 344444332 2335677776541 1112222221
Q ss_pred cC------CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Q 018040 213 PL------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286 (362)
Q Consensus 213 ~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~ 286 (362)
+. ...... ..+.++.+. . +..-++-. .+...+||+||+||+++|++|+.+|.++++ +.+|+.
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~----lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--V----LLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--E----EEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--h----hhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 11 011111 111111111 0 01111111 222345899999999999999999999999 999987
Q ss_pred HHHHHHHHHHhhc-CCceEEEEec
Q 018040 287 TDNLIQHTLGQHF-SDCTVITIAH 309 (362)
Q Consensus 287 ~~~~i~~~l~~~~-~~~tvi~itH 309 (362)
....+.+...... .+.+++++|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6533333333332 3567777664
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=129.65 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=69.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHhcCcEEEcCCCC--------------
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLRSRLSIIPQDPT-------------- 201 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~-------------- 201 (362)
++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.+++........+.++||+|+|.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999999 9988865442111236999999985
Q ss_pred --CCc-ccHHhhcCcCC----CCCHHHHHHHHHHcCCC-hHHHhccccc
Q 018040 202 --MFE-GSVHNNLDPLE----EYADEEIWEALDKCQLG-NEVRKNEGKL 242 (362)
Q Consensus 202 --l~~-~tv~enl~~~~----~~~~~~~~~~l~~~~l~-~~~~~~~~~l 242 (362)
+|+ .|+ +|+.+.. .....++.++++.+++. +..++.|..|
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 292 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMF 292 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344 377 8887632 22345688999999995 5666666544
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-15 Score=143.85 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=94.4
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHcCCC--CCcc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTF-------------------LGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTAG 172 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i-------------------~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p~~G 172 (362)
+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4588999999993 5899999988 8999999999999999999999999998 9999
Q ss_pred EEEE---CCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhcc
Q 018040 173 LIAI---DGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248 (362)
Q Consensus 173 ~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 248 (362)
+|.+ ||... +. ..++.++++ |+..++. .++.+|+.+. .....-...+ ..| .++
T Consensus 112 ~i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~-----------~~l~~~~~~i-~~P-~~~----- 168 (308)
T 1sq5_A 112 RVELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFV-----------SDLKSGVPNV-TAP-VYS----- 168 (308)
T ss_dssp CEEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH-----------HHHTTTCSCE-EEC-CEE-----
T ss_pred eEEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHH-----------HHHhCCCCce-ecc-ccc-----
Confidence 9999 88764 22 345568888 7665543 3666655321 0001100000 011 111
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
.+.+ +|+..+.+.+.+++++|+|.|....+.
T Consensus 169 ----~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 ----HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ----TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ----cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1222 333333355678999999999988774
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-16 Score=139.89 Aligned_cols=178 Identities=9% Similarity=0.064 Sum_probs=71.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEeCCCCCHH-HHhcCcEEEcCCCCCCcc-cHH
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDGIDISSIGLH-DLRSRLSIIPQDPTMFEG-SVH 208 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v~Q~~~l~~~-tv~ 208 (362)
..+++||++++|++++|+||||||||||+++|+ |++++. .++.++...++. ..+..+.|.++++..|.. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence 578999999999999999999999999999999 998541 222222111110 011234566666554432 333
Q ss_pred hhcCc----CCC---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH-HHH-HHhcCCCCEEEEeCC
Q 018040 209 NNLDP----LEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV-CLA-RVLLKKSKVLVLDEA 279 (362)
Q Consensus 209 enl~~----~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv-~iA-ral~~~p~illLDEP 279 (362)
+++.. ... ...+.+.+.++.... -. ++..+. -...-++++ .-+ ..++..|+..+++|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-vi-------ld~~~~-----g~~~~~~~~~~~~~~v~v~~~~~~~l~~R 157 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRKNLEDNVDKGVS-TL-------LVIDWQ-----GAFKFMEMMREHVVSIFIMPPSMEELRRR 157 (231)
T ss_dssp TCEEEEEEETTEEEEEECTTHHHHHHHTCE-EE-------EECCHH-----HHHHHHHHSGGGEEEEEEECSCHHHHHHC
T ss_pred CceehhhhhccccCCCCHHHHHHHHHcCCe-EE-------EEcCHH-----HHHHHHHhcCCCeEEEEEECCcHHHHHHH
Confidence 33321 110 112233444433110 00 000000 011123333 222 234567788889999
Q ss_pred CCCCCHHHHHHHHHHHHhhc------CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 280 TASVDTATDNLIQHTLGQHF------SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
+.+.|..+++.+.+.+.... ....++++.|+++.+.. .++++-...++
T Consensus 158 l~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 158 LCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp --------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 99999888777766654321 13466666776665544 55554333333
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-13 Score=118.08 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=55.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhcC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLD 212 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl~ 212 (362)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|+||++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 588888777665544456779999999987754 6666653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-15 Score=146.03 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=110.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc------------CCCCCccEEEECCEeCCCCCHHHH---hcCc---EEEcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFR------------IVEPTAGLIAIDGIDISSIGLHDL---RSRL---SIIPQDP 200 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g------------l~~p~~G~I~i~g~~i~~~~~~~~---r~~i---~~v~Q~~ 200 (362)
.+++|++++|+|+||||||||+++|+| ...|+.|.|.++|..+..+ .+. ++.+ .++.+.|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l--~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL--CEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH--HHHHCCSEEECEEEEEECTG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh--hhhcccccccCcceEEEecc
Confidence 456899999999999999999999999 6679999999987432111 011 1122 3667777
Q ss_pred CCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC--CEEEEe
Q 018040 201 TMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS--KVLVLD 277 (362)
Q Consensus 201 ~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p--~illLD 277 (362)
.+..+ +..+++. ......++.+.. +.. -++..-......+||+ .+| +++++|
T Consensus 94 Gl~~~~s~~e~L~-------~~fl~~ir~~d~---il~---Vvd~~~d~~i~~v~~~------------~dP~~di~ild 148 (392)
T 1ni3_A 94 GLTKGASTGVGLG-------NAFLSHVRAVDA---IYQ---VVRAFDDAEIIHVEGD------------VDPIRDLSIIV 148 (392)
T ss_dssp GGCCCCCSSSSSC-------HHHHHHHTTCSE---EEE---EEECCCTTCSSCCSSS------------SCHHHHHHHHH
T ss_pred ccccCCcHHHHHH-------HHHHHHHHHHHH---HHH---HHhccccceeeeeccc------------cCcchhhhhch
Confidence 76643 4444331 112222222211 000 0111111223335665 289 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhh-cC-CceEEEEecChhhhhh-cCeEE-EEeCC-EEEEecCh
Q 018040 278 EATASVDTATDNLIQHTLGQH-FS-DCTVITIAHRITSVID-SDMVL-LLSYG-LIEEFDSP 334 (362)
Q Consensus 278 EPts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~l~~~~~-~Dri~-vl~~G-~i~~~g~~ 334 (362)
||++.+|+...+...+.+... .+ +.|++ +|.+..+.. ||++. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999988888888776 43 56653 999998887 99999 99999 88766654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-13 Score=126.54 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=56.5
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHhcCcEEEcCCCCCCc-----ccHHh
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLRSRLSIIPQDPTMFE-----GSVHN 209 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-----~tv~e 209 (362)
+++.+|++++|+||||||||||+++|+|+.+|..|+|.+ +|+.++... ..++..++|++|.|.+.. .|+ +
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 345689999999999999999999999999999999999 888775432 112223899999997653 367 7
Q ss_pred hcC--cC-----------C-----CCCHHHHHHHHHHcCCChHH
Q 018040 210 NLD--PL-----------E-----EYADEEIWEALDKCQLGNEV 235 (362)
Q Consensus 210 nl~--~~-----------~-----~~~~~~~~~~l~~~~l~~~~ 235 (362)
|+. +. . ......+.++++..++.+..
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r 289 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYR 289 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHH
Confidence 772 11 0 11234578889999887643
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=116.23 Aligned_cols=143 Identities=13% Similarity=0.021 Sum_probs=99.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
+.++++++.|+.. . ++++|+ +|++++++|+||+||||++..|++++.+..|+|.+.+.|+......
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-------- 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------
Confidence 5566777778543 1 678888 9999999999999999999999999999899999987765321000
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+ .+....+..++.- .+.+ ..-+..+.+|.+|+++...+++++|
T Consensus 143 -------------~-----------ql~~~~~~~~l~~----~~~~---------~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 143 -------------E-----------QLRLLGEKVGVPV----LEVM---------DGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------H-----------HHHHHHHHHTCCE----EECC---------TTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------H-----------HHHHhcccCCeEE----EEcC---------CCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0 0001112222210 1100 0123445678999999889999999
Q ss_pred EeCC-CCCCCHHHHHHHHHHHHhhcCCceEEEEec
Q 018040 276 LDEA-TASVDTATDNLIQHTLGQHFSDCTVITIAH 309 (362)
Q Consensus 276 LDEP-ts~LD~~~~~~i~~~l~~~~~~~tvi~itH 309 (362)
+||| ++++|......+.+..+......+++++..
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~ 220 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 220 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence 9999 999999888888777766655666655543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-12 Score=119.38 Aligned_cols=139 Identities=13% Similarity=0.066 Sum_probs=89.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADE 220 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 220 (362)
++|++++++|+|||||||++..|++.+.+.+| +++.++.+|++ ..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 46999999999999999999999999988778 13566666652 22222222
Q ss_pred HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-
Q 018040 221 EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF- 299 (362)
Q Consensus 221 ~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~- 299 (362)
....+..++. .... .+ +...+.+++++ .+|+++|+| |+|+|+.....+.++.+-..
T Consensus 154 --~~~~~~~gl~-----------~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 154 --KTYAELLQAP-----------LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp --HHHHTTTTCC-----------CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred --HHHHHhcCCC-----------eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 1111222221 0000 12 34456777764 899999999 99999876665555443322
Q ss_pred --CCceEEEE--ecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 300 --SDCTVITI--AHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 300 --~~~tvi~i--tH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
...+++++ +|..+.+.. ++++..+..+.++..
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 22344454 899887776 787766777777653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-12 Score=127.99 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=50.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 185 (362)
+|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 79999999999 999999999999999999999999999999999999886543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-12 Score=121.12 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=72.7
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 215 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 215 (362)
+++..++|++++|+|+|||||||+++.|++.+.+..|+|.+.+.|... .+ ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------~~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------AA------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------HH------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------HH------------HH-------
Confidence 344567899999999999999999999999999988999987766421 00 01
Q ss_pred CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH---HHHHHhcCCCCEEEEeCCCC
Q 018040 216 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV---CLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 216 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv---~iAral~~~p~illLDEPts 281 (362)
+.+...++..++. . ...+|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 149 ----eqL~~~~~~~gl~-----------~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKIWGERVGAT-----------V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHHHHHHHTCE-----------E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHHHHHHcCCc-----------E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1222333333332 0 113589999999 99999999999999999975
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.8e-13 Score=116.12 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=75.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC-----------CccEEEECCEeCCC--CCHHHHhcCcEEEcCCCCCCc--ccHHh
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEP-----------TAGLIAIDGIDISS--IGLHDLRSRLSIIPQDPTMFE--GSVHN 209 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~~--~tv~e 209 (362)
+++|+|+||||||||++.++|...+ .+|+|.++|.++.- ++....++..++++|...-.. .++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976521 111111122233333211000 01222
Q ss_pred hcCcCCCCCHHHHHHHH---HH-cCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 210 NLDPLEEYADEEIWEAL---DK-CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l---~~-~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
+... .+.+.+...+ .. ......+.......| |..-..+...+|++++.+|+++++| ||++|.
T Consensus 111 ~~~~---~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~D---------l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH---LTYENVERWLKELRDHADSNIVIMLVGNKSD---------LRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH---HHHHTHHHHHHHHHHHSCTTCEEEEEEECGG---------GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEECcc---------cccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1110 0001111111 11 110000000111111 1111123467899999999999999 999999
Q ss_pred HHHHHHHHHHHh
Q 018040 286 ATDNLIQHTLGQ 297 (362)
Q Consensus 286 ~~~~~i~~~l~~ 297 (362)
.....+++.+.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999988888764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-15 Score=145.65 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=101.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEeCCCC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGG-------MKTGIVGRTGSGKSTLIQTLFRIV----EPTAGLIAIDGIDISSI 184 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~G-------e~~~ivG~nGsGKSTLl~~l~gl~----~p~~G~I~i~g~~i~~~ 184 (362)
++.++++..|+.. .+++++++.+++| +.++|+||||+|||||+++|+|.+ .+++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~~--~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQE--NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSCH--HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCcH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 3334455556543 4889999999877 899999999999999999999998 66777776665543211
Q ss_pred CHHHH-hcCcEEEcCCCCCCcccHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 185 GLHDL-RSRLSIIPQDPTMFEGSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 185 ~~~~~-r~~i~~v~Q~~~l~~~tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
. ..+ +..|.+++|...++. ++.+++... .... .....+.++ ..+. +-++.. ...+...||+|
T Consensus 97 ~-~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~-----~~l~--~~~li~-at~~~~~Ls~~ 166 (334)
T 1in4_A 97 L-TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIR-----IDIQ--PFTLVG-ATTRSGLLSSP 166 (334)
T ss_dssp H-HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHH
T ss_pred H-HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccccccc-----ccCC--CeEEEE-ecCCcccCCHH
Confidence 0 112 356999999877665 666665311 0000 000000000 0000 011111 22334579999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID 316 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~ 316 (362)
+|||++++ .+||+.+.+.+.+.+++..+.. -++|+.+.+..
T Consensus 167 l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~~~ 207 (334)
T 1in4_A 167 LRSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAAEM 207 (334)
T ss_dssp HHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHHHH
T ss_pred HHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHHHH
Confidence 99998655 6778877777877776543211 13566665544
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=103.43 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=87.4
Q ss_pred eeeee-eEEEeCCcEEEEEcCCCccHHHHHH-HHHcCCCCCccEEEECCEeCCCCCHHHH---hcCcEEEcCCCCCCccc
Q 018040 132 VLRGL-TCTFLGGMKTGIVGRTGSGKSTLIQ-TLFRIVEPTAGLIAIDGIDISSIGLHDL---RSRLSIIPQDPTMFEGS 206 (362)
Q Consensus 132 vL~~i-sl~i~~Ge~~~ivG~nGsGKSTLl~-~l~gl~~p~~G~I~i~g~~i~~~~~~~~---r~~i~~v~Q~~~l~~~t 206 (362)
.|+.+ .--+++|++++|+||||||||||+. ++.+..+...+.+++++.. +..++ ...+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 45554 4568999999999999999999965 4455555444555555432 23332 2345555553210
Q ss_pred HHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc--CCCCEEEEeCCCCCC-
Q 018040 207 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASV- 283 (362)
Q Consensus 207 v~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~--~~p~illLDEPts~L- 283 (362)
..++....... .. .+.. .. .+...... +....+....++.++ .+|+++++|+|++.+
T Consensus 83 -~~~l~~~~~~~-~~-------~~~~---~~----~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 83 -KGMFAMVDAFT-AG-------IGKS---KE----YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp -HTSEEEEECST-TT-------TCC-----C----CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred -CCcEEEEecch-hh-------cccc---cc----cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 01111100000 00 0000 00 00000000 112223333333333 479999999999988
Q ss_pred -CHHHHHHHHHHHHhh--cCCceEEEEecChhh--------hhh-cCeEEEEeC
Q 018040 284 -DTATDNLIQHTLGQH--FSDCTVITIAHRITS--------VID-SDMVLLLSY 325 (362)
Q Consensus 284 -D~~~~~~i~~~l~~~--~~~~tvi~itH~l~~--------~~~-~Dri~vl~~ 325 (362)
|+.....+...+.+. ..++|||+++|.... +.. ||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 553333333334332 347899999997754 344 999999974
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-12 Score=118.79 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=51.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH--------
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-------- 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-------- 186 (362)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 4888888655521 566666 8999999999999999999999999999999999998743322
Q ss_pred HHHhcCcEEEcCC
Q 018040 187 HDLRSRLSIIPQD 199 (362)
Q Consensus 187 ~~~r~~i~~v~Q~ 199 (362)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 1235679999985
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-14 Score=131.60 Aligned_cols=137 Identities=13% Similarity=0.154 Sum_probs=92.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
-+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.+++
T Consensus 50 ~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 50 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 345566666643 24899999999999 99999999999999999999886 7899999876543333334456778
Q ss_pred EcCCCC-CCc-ccHHhhcCcC-CCC-C-----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 196 IPQDPT-MFE-GSVHNNLDPL-EEY-A-----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 196 v~Q~~~-l~~-~tv~enl~~~-~~~-~-----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
++|... .++ .++.|++... ... . .++..+.+ ..+ + ..|||||+||+.+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~l-------l----~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQL-------L----VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH---------HHH-------H----HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH---------HHH-------H----HHHhCCCCCCCEEEEE
Confidence 888753 333 2566666321 110 0 01111111 111 1 1259999999999999
Q ss_pred hcCCCCEEEEeCCC
Q 018040 267 LLKKSKVLVLDEAT 280 (362)
Q Consensus 267 l~~~p~illLDEPt 280 (362)
+..+|++ +|++.
T Consensus 184 ~t~~p~~--ld~~l 195 (278)
T 1iy2_A 184 ATNRPDI--LDPAL 195 (278)
T ss_dssp EESCTTS--SCHHH
T ss_pred ecCCchh--CCHhH
Confidence 9999987 67654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=111.50 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=81.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEY 217 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~ 217 (362)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. .+.+++++-+++ +.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~----- 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LL----- 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CE-----
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eE-----
Confidence 478999999999999999999887775543333433 333321 0110 011111111111 00
Q ss_pred CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC--CCEEEEeCCCCCC----------CH
Q 018040 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASV----------DT 285 (362)
Q Consensus 218 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~--p~illLDEPts~L----------D~ 285 (362)
+.. . .+. .|-+.++++++++ |+++++||+++-+ |+
T Consensus 118 ----------------------------i~~-~--~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 118 ----------------------------VSQ-P--DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ----------------------------EEC-C--SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ----------------------------Eec-C--CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 000 0 122 2445678888765 9999999999998 32
Q ss_pred ---HHHHHHHHHHHhh-----cCCceEEEEecChh----------------hhhh-cCeEEEEeCCEEEEec
Q 018040 286 ---ATDNLIQHTLGQH-----FSDCTVITIAHRIT----------------SVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 286 ---~~~~~i~~~l~~~-----~~~~tvi~itH~l~----------------~~~~-~Dri~vl~~G~i~~~g 332 (362)
...+.+.+.++++ ..++|||+++|-.. .++. ||.++.++.++++..|
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 1112333333332 23789999999543 2445 9999999877655444
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.7e-12 Score=126.92 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=93.9
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc---ccH--
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE---GSV-- 207 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~---~tv-- 207 (362)
.+++++.++..+.|.|++||||||++++|.. ++.++.|++.+.+.|.+......+.. -|++.. ...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4778889999999999999999999999876 66777788888777765433222211 112211 001
Q ss_pred -HhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH----------HHHHHhcCCCC-EEE
Q 018040 208 -HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV----------CLARVLLKKSK-VLV 275 (362)
Q Consensus 208 -~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv----------~iAral~~~p~-ill 275 (362)
.+.+.......+++ .+.+...++.+... ++... ...+|+||+|+. ++|+++...|. +++
T Consensus 232 a~~~L~~~~~EmerR-~~ll~~~Gv~~i~~-----yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 232 AANALRWCVNEMERR-YKLMSALGVRNLAG-----YNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTTCSSHHH-----HHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHH-HHHHHHcCCccHHH-----HHHHH---HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 11111000001111 23455555543211 11111 012588887752 46777888898 788
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---hhc--CCceEEEEecChh
Q 018040 276 LDEATASVDTATDNLIQHTLG---QHF--SDCTVITIAHRIT 312 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~---~~~--~~~tvi~itH~l~ 312 (362)
+||+++-+|... ..+.+.+. +.. .|.++|++||+++
T Consensus 303 IDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999887432 23333333 222 3789999999987
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.5e-14 Score=127.50 Aligned_cols=138 Identities=13% Similarity=0.138 Sum_probs=92.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
.+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........++.+++
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 445666666643 24899999999999 99999999999999999999886 7899998876543332333455777
Q ss_pred EcCCCC-CCc-ccHHhhcCcC-CCC------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 196 IPQDPT-MFE-GSVHNNLDPL-EEY------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 196 v~Q~~~-l~~-~tv~enl~~~-~~~------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
++|... .++ .++.|++... ... ..++..+.+ ..+. ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHH-----------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEEE
Confidence 888753 233 2556666321 100 001111111 1111 1258999999999999
Q ss_pred hcCCCCEEEEeCCCC
Q 018040 267 LLKKSKVLVLDEATA 281 (362)
Q Consensus 267 l~~~p~illLDEPts 281 (362)
+..+|++ +|++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 687764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-11 Score=111.64 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=69.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEeCC-CCCHHHHhcCcEEEcCCC------CC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIA--------IDGIDIS-SIGLHDLRSRLSIIPQDP------TM 202 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 202 (362)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 689999999999999999999999 99999999999 9999884 345667889999999754 33
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHh
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK 237 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~ 237 (362)
+..++.+|+. ..++......+...+.+..
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHHHH
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHHHH
Confidence 4446666653 2345555555555555544
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-12 Score=116.62 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=89.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEE--------CCEeCCC-CCHHHHhcCcEEEcCCCC------CCc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV---EPTAGLIAI--------DGIDISS-IGLHDLRSRLSIIPQDPT------MFE 204 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~~------l~~ 204 (362)
+.+++|+|++||||||+.++|++.+ .++.|.+.. +|.++.+ ....++++++++++|++. +..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999876 678899887 6776542 234467888999999762 233
Q ss_pred ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhh-ccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 205 GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRV-TENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 205 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~-~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
.++.+++ .++++..++..+...+.+.....+..+.+ ..++.-++|+ .++++++.+++++|+.+++
T Consensus 85 ~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 3455544 24566777777888877766544443333 2345566776 4566778889999988764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-10 Score=117.67 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=91.7
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL 214 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~ 214 (362)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.+....+.++.+++.+|...++..++..|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987665 67988 788888888888888889999998887766666666311
Q ss_pred CCCC--HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 018040 215 EEYA--DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 215 ~~~~--~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~ 292 (362)
.... .......++ ..+.-++++| |+.++++.++..+.
T Consensus 82 pG~~~f~~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHHH
Confidence 1111 111111111 2456678888 88888887775443
Q ss_pred HHHHhhcCCceEEEEecChhh
Q 018040 293 HTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 293 ~~l~~~~~~~tvi~itH~l~~ 313 (362)
.+. . .+.++|++.|.++.
T Consensus 121 ~~~-~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VAE-R--LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHH-H--TTCCEEEEEECGGG
T ss_pred HHH-H--ccCCEEEEecCCch
Confidence 332 2 35677788887764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-10 Score=112.36 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=104.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcCc-EEEcCCCCCCcccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRL-SIIPQDPTMFEGSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~tv~ 208 (362)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+..++.+++ +....-+ ...++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~---~~~l~ 264 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN---AQNLR 264 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC---HHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC---HHHHh
Confidence 368888877999999999999999999999999987765445 56654432 3444443331 1111000 00111
Q ss_pred hhcCcCCCCCHHH---HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc--CCCCEEEEeCCCCCC
Q 018040 209 NNLDPLEEYADEE---IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASV 283 (362)
Q Consensus 209 enl~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~--~~p~illLDEPts~L 283 (362)
. ....+++ +.+++..++. .+ -.+. ....+|.+|.+ +.+|.+. .+|+++++|+++.-.
T Consensus 265 ~-----g~l~~~~~~~~~~a~~~l~~------~~----l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 265 T-----GKLTPEDWGKLTMAMGSLSN------AG----IYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp T-----SCCCHHHHHHHHHHHHHHHS------SC----EEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred c-----CCCCHHHHHHHHHHHHHHhc------CC----EEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 1 1222332 2233332211 11 1111 23467999876 5667666 679999999999877
Q ss_pred CH--------HHHHHHHHHHHhhc--CCceEEEEec---------C--hh--------hhhh-cCeEEEEeCCEE
Q 018040 284 DT--------ATDNLIQHTLGQHF--SDCTVITIAH---------R--IT--------SVID-SDMVLLLSYGLI 328 (362)
Q Consensus 284 D~--------~~~~~i~~~l~~~~--~~~tvi~itH---------~--l~--------~~~~-~Dri~vl~~G~i 328 (362)
+. .....+...|+.+. .+++||+++| + +. .++. ||.|++|+.++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 12244555565543 3789999999 2 32 4555 999999987654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-11 Score=125.03 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=100.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhcCcEEEcCCC---------
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLRSRLSIIPQDP--------- 200 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--------- 200 (362)
.+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++.+... ....++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 888888866543 234578887653
Q ss_pred -------------CCCc-ccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 201 -------------TMFE-GSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 201 -------------~l~~-~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+.+. .++.+|+....... ...+ .. ........+...++... .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~---v~--~~~~~~~~L~G~~~~~~-~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF---ID--ATGAHAGALLGDVRHDP-FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCE---EE--CTTCCHHHHHCEECCCC-C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCE---EE--cCCCCHHhcCceEEech-hhcCCccccccccccCce
Confidence 1111 13334432110000 0000 00 00000000111111111 112348999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~ 297 (362)
....++.+|+|||... |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 899999999999874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-10 Score=99.88 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~ 297 (362)
...|++++.+|++.++| ||++|......+++.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999988888777754
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-12 Score=123.64 Aligned_cols=136 Identities=16% Similarity=0.101 Sum_probs=85.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
.+++++++.+++|++++|+||||||||||+++|+|. .+|++..-. . +...++..++++||.+.++ .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 478999999999999999999999999999999995 467776511 1 1112233477888886532 223
Q ss_pred cCcCCC-------CCH----HHHHHHHHH---cCCChHHHhccccch-----hhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 211 LDPLEE-------YAD----EEIWEALDK---CQLGNEVRKNEGKLE-----SRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 211 l~~~~~-------~~~----~~~~~~l~~---~~l~~~~~~~~~~l~-----~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+..... ... ..+...+.- +.+. ...+..++ -.+..+...+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~---tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLE---KKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEEC---CSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeec---cCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 322111 011 112222210 0000 00000000 1234455678999999999998999999
Q ss_pred CEEE-EeCCCC
Q 018040 272 KVLV-LDEATA 281 (362)
Q Consensus 272 ~ill-LDEPts 281 (362)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9998 999987
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-09 Score=95.60 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=62.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
+...+|++++|+||||||||||++.|++.++ |..|+ ++|++..-++...+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999886 67787 688887777777777655 57778888
Q ss_pred ccHHhhcCcCCCCCHHHHHHHHHH
Q 018040 205 GSVHNNLDPLEEYADEEIWEALDK 228 (362)
Q Consensus 205 ~tv~enl~~~~~~~~~~~~~~l~~ 228 (362)
+++.+|. ++ ...+.+.++++.
T Consensus 89 ~~~~~n~-YG--t~~~~v~~~l~~ 109 (197)
T 3ney_A 89 GSYQGNM-FG--TKFETVHQIHKQ 109 (197)
T ss_dssp EEETTEE-EE--EEHHHHHHHHHT
T ss_pred hhhhcee-cc--cchhhHHHHHhc
Confidence 8888885 32 234556666553
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-09 Score=95.26 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEE
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAI 176 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i 176 (362)
+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6999999999999999999999999874 4565543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.6e-09 Score=91.89 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=41.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+++++|++++|+|||||||||++++|++++.|+.| +.+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977655 212 22221111 11223488888876443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.4e-10 Score=97.24 Aligned_cols=61 Identities=20% Similarity=0.086 Sum_probs=43.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
.++.++|++++|+||||||||||+++|++.+ |.+.++|.++... ....+..+++++|++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccc
Confidence 4667889999999999999999999999987 8999998776421 11122346888887543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-08 Score=101.40 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCC----------CCCCHHHHHHHHHHHHhh-----cCCceEEEEecChhhh
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEAT----------ASVDTATDNLIQHTLGQH-----FSDCTVITIAHRITSV 314 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPt----------s~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~l~~~ 314 (362)
+++++|-.+++|....|.+|++||+. ++.|....+.+.+++... ..+..||.+||+++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 67889999999999999999999993 466766666555555433 2356889999998654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.3e-09 Score=99.96 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=43.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 378999999999999999999999999887777765 66664322 1 22445567666654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-10 Score=114.87 Aligned_cols=138 Identities=13% Similarity=0.159 Sum_probs=93.0
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++++...|.. +.+++++++++++| +.|+||+|+|||||+++|++... .|.+.++|.++.........+++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34444444432 24788999999999 99999999999999999999875 68999999877554333344557778
Q ss_pred cCCCC-CCcc-cHHhhcCcCCC-C------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 197 PQDPT-MFEG-SVHNNLDPLEE-Y------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 197 ~Q~~~-l~~~-tv~enl~~~~~-~------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+|... ..+. .+.|++..... . ..++..+.+.. + + ..||||++|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~---------L-------L----~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ---------L-------L----VEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH---------H-------H----HHGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH---------H-------H----HHhcccccCccEEEEEe
Confidence 88764 2333 45666643211 0 11222222211 1 1 12589999999999999
Q ss_pred cCCCCEEEEeCCCCC
Q 018040 268 LKKSKVLVLDEATAS 282 (362)
Q Consensus 268 ~~~p~illLDEPts~ 282 (362)
.++|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 999987 8998764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-09 Score=100.57 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=35.7
Q ss_pred cEEEEEE-EEEeCCCCCceeeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 115 EVDIHGL-QVRYAPHLPLVLRGLTCTFLG---GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 115 ~i~~~~l-~~~y~~~~~~vL~~isl~i~~---Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+ +|+|++. .++|+++||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5999999 9999332 4699999999999 9999999999999999999999865
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7.8e-09 Score=100.20 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=80.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-----------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC----CcccHH-
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE-----------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM----FEGSVH- 208 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~-----------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----~~~tv~- 208 (362)
+++|+|++|||||||++.|+|... |..|.|.++|.++. +....|++.+.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999875 56799999987652 22345666654321 111221
Q ss_pred ----hhcCcCCCC--CH----HH---HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH----HHh-cCC
Q 018040 209 ----NNLDPLEEY--AD----EE---IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA----RVL-LKK 270 (362)
Q Consensus 209 ----enl~~~~~~--~~----~~---~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA----ral-~~~ 270 (362)
+.+.+.-+. .. +. +.+.++..++.+ .| --.+..+...+|+|++||+.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~----~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG----KP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS----CC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC----CC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 111111111 11 11 233444443321 11 0112333344688899988877 666 444
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
|++ +|+|++|......+.+.|.+.
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHH
Confidence 554 899999999888888877653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-09 Score=91.25 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=62.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE--eCCCCCH----HHHhcCcEEEcCCCCC-C--c
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI--DISSIGL----HDLRSRLSIIPQDPTM-F--E 204 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~--~i~~~~~----~~~r~~i~~v~Q~~~l-~--~ 204 (362)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-.... ...+..|.+++|++.- + .
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999998887765432221 1100000 0123468999998631 1 1
Q ss_pred ---ccHHhhcCc---------CCCCCHHHHHHHHHHcCCCh
Q 018040 205 ---GSVHNNLDP---------LEEYADEEIWEALDKCQLGN 233 (362)
Q Consensus 205 ---~tv~enl~~---------~~~~~~~~~~~~l~~~~l~~ 233 (362)
.++...+.. .......++.+.++.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 123222210 11234667778888877753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.9e-09 Score=99.31 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=55.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHH-----hcCcEEE-cCCCC
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDL-----RSRLSII-PQDPT 201 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~~~ 201 (362)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 467888889999999999999999999999999999999999998887754321 233 4568888 66543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-08 Score=88.91 Aligned_cols=126 Identities=12% Similarity=0.164 Sum_probs=73.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 224 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 224 (362)
+++|+|++||||||+.+.|+++ |...+|+- .+.+.+. + ++ ...+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d--------~~~~~~~---~-----~~-------------~~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD--------VVAREVV---A-----KD-------------SPLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH--------HHHHHTT---C-----SS-------------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH--------HHHHHHc---c-----CC-------------hHHHHH
Confidence 6899999999999999999983 55555432 1211110 0 00 112223
Q ss_pred HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceE
Q 018040 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTV 304 (362)
Q Consensus 225 ~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tv 304 (362)
..+..|.. .-.+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++
T Consensus 50 i~~~~g~~------------------~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~v 108 (206)
T 1jjv_A 50 IVEHFGAQ------------------ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYT 108 (206)
T ss_dssp HHHHHCTT------------------CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEE
T ss_pred HHHHhCHH------------------HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEE
Confidence 33333321 012678999999999988887644332 3345666666666655443 35588
Q ss_pred EEEecChhhh--h-hcCeEEEEeC
Q 018040 305 ITIAHRITSV--I-DSDMVLLLSY 325 (362)
Q Consensus 305 i~itH~l~~~--~-~~Dri~vl~~ 325 (362)
|+.+|.+... . .||++++++.
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEEC
T ss_pred EEEechhhhcCcHhhCCEEEEEEC
Confidence 8888987654 3 4999999864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-08 Score=108.00 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhcC-CceEEE-EecChhhhhh-cC
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNLIQHTLGQHFS-DCTVIT-IAHRITSVID-SD 318 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~l~~~~~-~D 318 (362)
-+|.|+.+|..++++++.+++++|+|||.. +||......+.+.+..... .+++++ +||+.+.+.. ++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 468999999999999999999999999997 8998766655555555443 467777 5898877665 44
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=90.78 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHhhcCCceEEEEe--cChh
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLD-EATASVDTATDNLIQHTLGQHFSDCTVITIA--HRIT 312 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLD-EPts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~l~ 312 (362)
..+|+|++|++. +.+...++-++++| ++++++|......+.+.+.....++.+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 346999999887 66666778889999 9999999988887777776654478888888 7774
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-09 Score=95.37 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=44.9
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCEeC
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI--AIDGIDI 181 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I--~i~g~~i 181 (362)
|++..++.- .+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHECSV--EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ------CCC--CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCccccccc--CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 445444332 36677888889999999999999999999999999987 67988 8887654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-08 Score=88.06 Aligned_cols=45 Identities=31% Similarity=0.280 Sum_probs=38.1
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 205 (362)
-++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3677899999999999999999999999874 36788888877654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-07 Score=88.84 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=34.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDG 178 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g 178 (362)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.+.-.+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 37889999988 999999999999999999999 6777777765443
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-07 Score=83.79 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=24.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999765
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-09 Score=100.81 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=34.5
Q ss_pred eeeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHcCCC--CCccEEEE
Q 018040 132 VLRGLTCTFLGGM------KTGIVGRTGSGKSTLIQTLFRIVE--PTAGLIAI 176 (362)
Q Consensus 132 vL~~isl~i~~Ge------~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~i 176 (362)
.|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 4555555555555 899999999999999999999987 45555433
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-08 Score=87.09 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=29.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEE
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLI 174 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I 174 (362)
++|++++|+||||||||||++.|++.+++ ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 57999999999999999999999999987 33333
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.9e-07 Score=84.73 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=65.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.| .|+.=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeC-------------
Confidence 4555554688999999999999999999988775433222222 22211
Q ss_pred CcCCCCCHHHHHH-HHH-HcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q 018040 212 DPLEEYADEEIWE-ALD-KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284 (362)
Q Consensus 212 ~~~~~~~~~~~~~-~l~-~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD 284 (362)
+.+.+++.. .+. ..++.. .+ + .. ..||.+++||++.|...+.+++++|.|+|...+|
T Consensus 83 ----Ems~~ql~~Rlls~~~~v~~--~~----l---~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ----EMSAEQLALRALSDLTSINM--HD----L---ES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ----SSCHHHHHHHHHHHHHCCCH--HH----H---HH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ----CCCHHHHHHHHHHHhhCCCH--HH----H---hc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 112222221 111 112211 00 1 00 1589999999999999999999999999876544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-07 Score=83.63 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=39.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 185 (362)
.++|++++|+|+|||||||+++.|.+++++..|.|.+.+.+....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 4678999999999999999999999999888899988766654333
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-07 Score=84.46 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=46.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC------CHHH----HhcCcEEEcCCCCCCc
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI------GLHD----LRSRLSIIPQDPTMFE 204 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~l~~ 204 (362)
+.++|++++|.|+|||||||++++|+|+ .|+|.+.+.+.... .... .++.+++++|.+.++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 4478999999999999999999999998 78999988765321 1111 1345788888765543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-07 Score=86.05 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=25.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999888764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=84.23 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
++.+++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999988888888766654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.7e-07 Score=77.60 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=33.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88899886654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-06 Score=85.69 Aligned_cols=61 Identities=18% Similarity=0.039 Sum_probs=49.7
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 183 (362)
..+++++.|++.. ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+..
T Consensus 78 v~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 78 VYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 3445666675431 567777 899999999999999999999999999999999998777643
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-07 Score=92.28 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=47.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEE-ECCEeCCC-------CCHH---HHhcCcEEEcCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIA-IDGIDISS-------IGLH---DLRSRLSIIPQD 199 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~ 199 (362)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +||.++.. .+.. ..++++++++|+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999887 784 89876521 1211 234557888776
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.13 E-value=6.3e-07 Score=84.36 Aligned_cols=147 Identities=20% Similarity=0.139 Sum_probs=74.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC-CEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCH
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID-GIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YAD 219 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~ 219 (362)
++.+++|+|++|+|||||++.|+|.- +.+. +.+- . ...+..++++++..-+. +.|. ++.. ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~--t---Tr~~~~gi~~~~~~~i~--~iDT--pG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ--T---TRHRIVGIHTEGAYQAI--YVDT--PGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS--C---CSSCEEEEEEETTEEEE--EESS--SSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC--c---ceeeEEEEEEECCeeEE--EEEC--cCCCccch
Confidence 34589999999999999999999863 2221 1110 0 11234677776542111 1110 1110 001
Q ss_pred HHHHHHHHHcCCChHHHhccccchh--hhccCCCCCChhHHHHHHHHHHhc--CCCCEEEEeCCCCCCCHHH-HHHHHHH
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLES--RVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDTAT-DNLIQHT 294 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~--~~~~~g~~LSgGqrQRv~iAral~--~~p~illLDEPts~LD~~~-~~~i~~~ 294 (362)
..+.+.+ .... .......|. .+-+... +|+|++ .+++++. ..|.++++ +.+|... +..+.+.
T Consensus 72 ~~l~~~~--~~~~---~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 72 RAINRLM--NKAA---SSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPH 138 (301)
T ss_dssp HHHHHHH--TCCT---TSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHH
T ss_pred hhHHHHH--HHHH---HHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHH
Confidence 1111111 0100 000111111 1112222 898886 4566665 67889988 7888765 5556666
Q ss_pred HHhhcC--C--ceEEEEecChhhhhh
Q 018040 295 LGQHFS--D--CTVITIAHRITSVID 316 (362)
Q Consensus 295 l~~~~~--~--~tvi~itH~l~~~~~ 316 (362)
+.+..+ + ..+.+++|+-..+..
T Consensus 139 l~~l~~~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 139 LQFLASQMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp HHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred HHHHHHhcCcCceEEEECCCCCCHHH
Confidence 654432 3 356667776655543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.13 E-value=9.2e-06 Score=77.87 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=33.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc----CCceEEEEecChhh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHF----SDCTVITIAHRITS 313 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~ 313 (362)
.+|.++++||+... |......+...+.... .+.++|++||+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999876 8877777777775433 36789999998854
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-07 Score=88.39 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=48.7
Q ss_pred cccEEEEEEEEEeCCCCCceee--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLR--------------GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~--------------~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.+.|+|+++.|+... ..|+ |+++.+.+|++++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~er-~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSR-LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSB-CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCc-cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 35689999999998754 5888 899999999999999999999999999999876
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-06 Score=82.54 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=25.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.3e-05 Score=69.55 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAG 172 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G 172 (362)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997766555
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-06 Score=86.52 Aligned_cols=67 Identities=18% Similarity=0.392 Sum_probs=44.4
Q ss_pred CCCCEEEEeCCCCCCCH-HHHHHHHHHHHhhc-CCceEEEEecCh-hhhhh-cCeEEE-EeCCEEEEecChh
Q 018040 269 KKSKVLVLDEATASVDT-ATDNLIQHTLGQHF-SDCTVITIAHRI-TSVID-SDMVLL-LSYGLIEEFDSPT 335 (362)
Q Consensus 269 ~~p~illLDEPts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~l-~~~~~-~Dri~v-l~~G~i~~~g~~~ 335 (362)
.+|++|++||+..-.+. .++..+...+.... .++.+|++||+. ..+.. .+++.- +..|.+++..+|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 66777888887643 568899999974 33222 222222 4456666666553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-05 Score=72.25 Aligned_cols=71 Identities=8% Similarity=0.025 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHhhc-----CCceEEEEecChhhh----
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTA----------TDNLIQHTLGQHF-----SDCTVITIAHRITSV---- 314 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~----------~~~~i~~~l~~~~-----~~~tvi~itH~l~~~---- 314 (362)
++++++|..++++...+|.+|++||+.+-++.. ....+...+.... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777788888888899999999998776532 2223444444332 124577788876432
Q ss_pred -hhcCeEEEEe
Q 018040 315 -IDSDMVLLLS 324 (362)
Q Consensus 315 -~~~Dri~vl~ 324 (362)
.++++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 2367665554
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.98 E-value=7.1e-07 Score=90.85 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=42.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
.+++++++++ +|+.++|+||||+|||||+++|++.+.+..|+|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3677788888 899999999999999999999999999988999887743
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.96 E-value=6.7e-07 Score=85.26 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=37.4
Q ss_pred ceeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCcc
Q 018040 131 LVLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIVEPTAG 172 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~~G 172 (362)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 478889999999998 999999999999999999998766544
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=4.4e-06 Score=82.65 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=38.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
-.++|+|++|+|||||++.|+|... +.+|.+.++|.++.-++....++..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 3799999999999999999999853 678999999987643333334444555556555443
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.94 E-value=6.1e-07 Score=85.98 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=45.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
.+++++++++.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 3788889999999999999999999999999999999888888887666553
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.8e-06 Score=71.51 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
.|++++|+|++||||||++++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.9e-06 Score=74.22 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEeC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGIDI 181 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~i 181 (362)
++|++++|+|++||||||+.+.|.+.+++ .| .|.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46999999999999999999999998766 56 666676443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.7e-06 Score=81.78 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
++.+++|+|++|||||||++.|+|.+.+..|+|.+.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 46799999999999999999999998888888888776554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.4e-05 Score=72.91 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=28.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.|+.+.--+++|+.+.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666654589999999999999999999877764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=8.7e-06 Score=68.49 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=25.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455566554 999999999999999999873
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.80 E-value=4.7e-06 Score=75.27 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=32.5
Q ss_pred eeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 018040 133 LRGLTCTFL---GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177 (362)
Q Consensus 133 L~~isl~i~---~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~ 177 (362)
|.++|+++. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 666677666 8999999999999999999999999887 6666543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.8e-06 Score=78.89 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~ 170 (362)
.++..+.|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.8e-06 Score=73.45 Aligned_cols=56 Identities=29% Similarity=0.319 Sum_probs=37.4
Q ss_pred EEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCccEEEECCE
Q 018040 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--------VEPTAGLIAIDGI 179 (362)
Q Consensus 122 ~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--------~~p~~G~I~i~g~ 179 (362)
+++|++.. .+++++|+..+++ .++++|++|+|||||++.+.+- ..++.+.+.++|.
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 45566543 5889999988877 5899999999999999999862 2234456666654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.2e-05 Score=68.00 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=20.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++++..++. .++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788999988877 789999999999999999997
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.71 E-value=2.5e-05 Score=66.56 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.4e-06 Score=72.95 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=37.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEe
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGID 180 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~ 180 (362)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34568999999999999999999999999987788 88887543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00016 Score=67.66 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.++++..+.|.||+|+|||||++++++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 456788999999999999999999998763
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=69.02 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+++.|.|++|+|||||...++.-.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997777543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.63 E-value=5.9e-06 Score=72.76 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+..+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.58 E-value=2.3e-05 Score=68.48 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
..+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999976543
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=1.6e-05 Score=72.08 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEeCCCCC-HHHHhcCcEEEc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIA--------IDGIDISSIG-LHDLRSRLSIIP 197 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~--------i~g~~i~~~~-~~~~r~~i~~v~ 197 (362)
.-+++|.||+||||||+.+.|+ |+...+.|.++ -.|.++.+.. ..++...+.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~ 75 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGV 75 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEE
Confidence 4589999999999999999998 55555666662 3455543321 233445555655
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=1.3e-05 Score=72.18 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
..|+.++++|||||||||++.+++
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999999999887664
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=5.2e-05 Score=66.99 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=24.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
.+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345556655 499999999999999999885
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=8.5e-05 Score=69.94 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
+..+.|.||+|+|||||++++++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999986643
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.48 E-value=8.7e-06 Score=76.48 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=47.9
Q ss_pred EEEEEEEeCCCCCceeee-eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 018040 118 IHGLQVRYAPHLPLVLRG-LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~-isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 183 (362)
.+++...|++.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 77 ~~~l~~~~~~~~----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 77 YDELSNLFGGDK----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHTTCSC----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHhcccc----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 444555565431 45 777766 99999999999999999999999999888999987777643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0002 Score=65.82 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++.-+.|.||+|+|||||+++++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456779999999999999999998864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=61.66 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.46 E-value=3.3e-05 Score=66.69 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=32.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDG 178 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g 178 (362)
..+|.++.|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34689999999999999999999999887766766 3443
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00014 Score=67.64 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
...+.|+||+|+||||++++|++.+.+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766644
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.46 E-value=3.5e-05 Score=72.95 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=34.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
++.++++|| ...+++.....+.+.+.+......+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67888888888888887765556677788776543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=8.5e-05 Score=65.32 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=34.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
.+|.++++||+-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999765 78887778877776554567888888876644
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=5.3e-05 Score=65.48 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.5
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.42 E-value=7.8e-05 Score=63.67 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.4e-06 Score=78.64 Aligned_cols=57 Identities=32% Similarity=0.376 Sum_probs=36.4
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
+.+.+++++..|+.. .++++++|+| +|+|++|+|||||++.|++...+..|.+..++
T Consensus 16 ~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 468889998888643 4788999876 99999999999999999987665555544333
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=6.5e-05 Score=73.18 Aligned_cols=41 Identities=29% Similarity=0.479 Sum_probs=33.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC-----------CCCCccEEEECCE
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRI-----------VEPTAGLIAIDGI 179 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-----------~~p~~G~I~i~g~ 179 (362)
.+..|..++|||++|+|||||+++|+|. ..|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456889999999999999999999998 6788888887663
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00044 Score=65.12 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.36 E-value=5.3e-05 Score=67.21 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=70.62 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts-~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
.|.+....+...+.+++++|+..... ++... ...+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 47777778888888898888765544 34443 4556666654 467888888877654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.30 E-value=9.9e-05 Score=64.46 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.28 E-value=8.7e-05 Score=64.11 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEe
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGID 180 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~ 180 (362)
-.+++|+|++|||||||++.|++.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3677776644
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00099 Score=55.11 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 310 (362)
+..+|++||.- .|++..+..+.+.+.....+..+|.+|+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 34689999984 67888888888888544445566666653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=9.3e-05 Score=71.61 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeE
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri 320 (362)
+.+|+++|..+|+++++|||+ |+++.. ..++....|.+++.++|..+....+||+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHH
Confidence 569999999999999999999 776533 3444444578999999987643336664
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00014 Score=62.25 Aligned_cols=26 Identities=50% Similarity=0.704 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPT 170 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 170 (362)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.24 E-value=5.7e-05 Score=66.07 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
..+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 4689999999999999999998865 455565533
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00017 Score=65.60 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=31.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
+++.++.|+|++||||||+.+.|...+. .|.+.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 4567899999999999999999998765 35677777543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=64.68 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=29.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466665458999999999999999999998777644
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00018 Score=65.32 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=28.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
+++++.+++| +.|+||+|+|||||+++|++.+... -+.+++.+
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 3344444444 8999999999999999999876422 35555533
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00018 Score=69.73 Aligned_cols=57 Identities=26% Similarity=0.361 Sum_probs=43.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHhhc-CCceEEEEecChhhhh-------------hcCeEEEEeCC
Q 018040 270 KSKVLVLDEATASVD---TATDNLIQHTLGQHF-SDCTVITIAHRITSVI-------------DSDMVLLLSYG 326 (362)
Q Consensus 270 ~p~illLDEPts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-------------~~Dri~vl~~G 326 (362)
.|.++++||.-.-++ +.....+.+.+++.+ .+..++++||+++.+. .|+..+++...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 588999999998885 667778888887754 4789999999987553 26667776643
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00024 Score=60.86 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=7.1e-05 Score=71.77 Aligned_cols=36 Identities=36% Similarity=0.506 Sum_probs=32.4
Q ss_pred eeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCC
Q 018040 132 VLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 132 vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 67788888899999 9999999999999999999864
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00078 Score=57.75 Aligned_cols=35 Identities=43% Similarity=0.705 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc-C----CCCCcc----EEEECCE
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR-I----VEPTAG----LIAIDGI 179 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g-l----~~p~~G----~I~i~g~ 179 (362)
+++|+|++|+|||||++.+.+ . +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 689999999999999976654 3 455655 4555553
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00045 Score=58.70 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998664
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00038 Score=62.47 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999863
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00076 Score=64.10 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.95 E-value=3.6e-07 Score=84.39 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=62.2
Q ss_pred ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHhhcCCceEEE
Q 018040 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV--LVLDEATASVDTAT---------DNLIQHTLGQHFSDCTVIT 306 (362)
Q Consensus 238 ~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i--llLDEPts~LD~~~---------~~~i~~~l~~~~~~~tvi~ 306 (362)
++..+++.+++++..+|+| ||++++++++.+|++ +|+||+|+++|... +...++.+....+|+|.+.
T Consensus 158 l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~ 235 (261)
T 2eyu_A 158 LSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLE 235 (261)
T ss_dssp HHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHH
T ss_pred HHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHH
Confidence 4557888999999999999 999999999999999 99999999999863 3356777777778999998
Q ss_pred EecChh
Q 018040 307 IAHRIT 312 (362)
Q Consensus 307 itH~l~ 312 (362)
++|++.
T Consensus 236 ~a~r~~ 241 (261)
T 2eyu_A 236 DAMEAS 241 (261)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 888875
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.005 Score=60.72 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 176 (362)
++.+++++|++||||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999877654344544
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00048 Score=57.88 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0039 Score=56.08 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..-+.|.||+|+||||++++++..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00056 Score=65.90 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=26.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
+++..+++.+ .+.+|+|+|||||||++.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4677778777 499999999999999999886
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00075 Score=64.96 Aligned_cols=36 Identities=42% Similarity=0.765 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc-----------CCCCCccEEEECC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFR-----------IVEPTAGLIAIDG 178 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~g-----------l~~p~~G~I~i~g 178 (362)
|-.++|||.+|+|||||++.|++ -..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3467778887765
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0046 Score=57.14 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.-+.|.||+|+||||+.+.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888765
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0044 Score=59.66 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+++.|.||.|+|||||...++.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999999976654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00015 Score=63.56 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPT 170 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 170 (362)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0038 Score=59.62 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+..-+.|.||+|+|||||+++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346679999999999999999998764
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00052 Score=59.36 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00063 Score=58.17 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+|.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998644
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00054 Score=59.35 Aligned_cols=31 Identities=39% Similarity=0.473 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
..+++|+|++||||||+.+.|+.. |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 357999999999999999999985 6666654
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0012 Score=59.31 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecCh-----------hhhhhcCeEEEEe
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRI-----------TSVIDSDMVLLLS 324 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l-----------~~~~~~Dri~vl~ 324 (362)
+++++++||.-- |+...-+.+ ..+.. .+.+||++-|+. ..+..||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665433333 22322 378999999932 2233499998754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00057 Score=58.31 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00068 Score=56.74 Aligned_cols=19 Identities=42% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTL 163 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l 163 (362)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00076 Score=59.49 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHc
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.+-+++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00074 Score=62.81 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
|..+.|+||+||||||+.+.|+.-++ .|.+.+++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 56899999999999999999987543 35677765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0029 Score=54.60 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=31.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
.++.++++||. ..+++.....+...+.....+..+|++|+....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 36889999996 446777777777777765556677777776654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00062 Score=58.42 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999997643
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00072 Score=58.94 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00088 Score=57.28 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997644
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00076 Score=61.44 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++|+||+|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0052 Score=69.64 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=30.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDG 178 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g 178 (362)
+++|+.+.|.||+|+|||||+..++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999998877654433443 3344
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+|.+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0035 Score=61.92 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=26.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 444433479999999999999999999866654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.001 Score=56.78 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00094 Score=56.74 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=57.16 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
+|.+++|.|+.||||||+.+.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876553
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=55.72 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~ 177 (362)
.++.|+|++||||||+.+.|... ..|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 47899999999999999999872 12555554
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0019 Score=60.83 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=34.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc----CCCCCccEEEE
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR----IVEPTAGLIAI 176 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g----l~~p~~G~I~i 176 (362)
..+++..+.+ .|.-++|.|+||+||||+...+.+ ++..+...|..
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 3678887777 789999999999999999999987 44444444443
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=60.68 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=57.25 Aligned_cols=26 Identities=31% Similarity=0.189 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+|.+++|.|+.||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=57.31 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|.+++|.|+.||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999998543
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=56.23 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998644
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00082 Score=57.68 Aligned_cols=26 Identities=27% Similarity=0.274 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999987653
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.011 Score=57.87 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+..++.|+|++||||||+.+.|+.-
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0028 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=55.71 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=54.05 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
=.++++|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0014 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=53.28 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998853
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0016 Score=53.42 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=55.33 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=53.53 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=56.34 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.002 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.002 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.002 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0015 Score=55.45 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.++.|.|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998544
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999988643
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0021 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0021 Score=53.89 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=54.78 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998764
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0027 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.-.++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=55.03 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++.+++|+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998654
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0077 Score=57.01 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
++.++++||.- .++......+.+.+.+...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999963 46777777788877665455678888887654
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0027 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++|-++.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=58.89 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|++|+|||||++.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0025 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0025 Score=54.32 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999986
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=53.84 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=56.44 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++.++.|+|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0024 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=54.30 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0027 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999996543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0022 Score=58.84 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|++|+|||||++.|++--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=52.63 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999975
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0031 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0029 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.003 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.++|+|+.|+|||||++.+.|-...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999987653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0027 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0034 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+-+++|+|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0031 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0031 Score=53.66 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0031 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0019 Score=54.55 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998863
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0031 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0033 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0031 Score=59.01 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.++|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0035 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0029 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++|.|+.||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0033 Score=55.13 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|+.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997544
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0034 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0037 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0034 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..+++|.|+.||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998544
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=56.91 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|++|||||||++.|+|--
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0038 Score=56.85 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++.++.|+|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0022 Score=56.14 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-.++|+|++|+|||||++.++|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.003 Score=53.86 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0036 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997643
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0029 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0038 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=52.62 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999854
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0037 Score=58.52 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+++|+|+.|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999985
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0035 Score=57.11 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999873
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0039 Score=53.13 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.004 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0037 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.031 Score=64.34 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+++.|.||+|+|||||+..++.-.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987776543
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=53.38 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999987
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.004 Score=52.77 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.=.++++|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0039 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0042 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+++|+|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999865
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.025 Score=55.66 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++-.=+.+.||.|+|||+|.+++++...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 55667799999999999999999998643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0039 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0043 Score=52.83 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0043 Score=52.20 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0042 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.004 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 78999999999999999998753
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0047 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0065 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=27.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++..-+.+ .|..+.|+||+|||||||...|+.-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 456555554 58899999999999999999887643
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0053 Score=58.39 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 467899999999999999999998663
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0043 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0042 Score=57.72 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0046 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0043 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0047 Score=52.75 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.004 Score=59.99 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|||++|+|||||+++|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0044 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.016 Score=60.82 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.++||+|+|||++.++|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0046 Score=54.68 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999874
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.005 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++-+++|.|+.||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0046 Score=56.81 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0049 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.005 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0052 Score=52.20 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0038 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0052 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
=.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999998653
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0052 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.005 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-.++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0053 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0048 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0048 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0053 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0046 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998863
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0054 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0054 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0045 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.005 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|||||||++.+++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0029 Score=58.93 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0053 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.++|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999843
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0052 Score=56.76 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.-+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0065 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++++|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0053 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0061 Score=55.83 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~ 173 (362)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999876544443
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0062 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.++++|++|+|||||++.+.+-..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 6999999999999999999885443
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0063 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0062 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997543
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0056 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0052 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.|+|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0065 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++++|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0063 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888753
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.08 Score=60.12 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|.++.|.||+|+|||||..-++.-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999998766543
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0061 Score=53.29 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++++|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0062 Score=57.97 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997664
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.007 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.+++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.006 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0074 Score=50.68 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0065 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
=.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998643
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0064 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999997643
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0069 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+|-++.|+|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999997654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0064 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0044 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=9.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.038 Score=51.37 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 270 KSKVLVLDEATASVD-TATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 270 ~p~illLDEPts~LD-~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
+++++++||.-. +. ......+...+.....+..+|++|++...+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 789999999843 44 556667777776655567888888876643
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.017 Score=53.20 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
++.++++||.- .++......+.+.+.+...+..+|++|++...
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 48899999963 35556666677777665556678888877654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0064 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.=.++|+|+.|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999865
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0074 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.02 Score=61.06 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=26.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEEC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAID 177 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~ 177 (362)
..+.|+||+|+|||++.++|...+....+ -|.+|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 47899999999999999999988754333 24444
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0064 Score=54.58 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=22.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
..+|.++.|.|+.||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987654
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0092 Score=52.89 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.+|.++.|.|+.||||||+++.|..-+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999876643
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.009 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0097 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+..+.|+|+.||||||+.+.|+.-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.01 Score=58.80 Aligned_cols=36 Identities=36% Similarity=0.618 Sum_probs=29.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++.+ +.+-+|++++|+|++|+|||||++.|++-..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 44444 5678899999999999999999999887544
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0089 Score=55.14 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0098 Score=53.67 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.004 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988854
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0071 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0086 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|+.|+|||||++.+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999998888643
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0095 Score=56.31 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHH
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTL 163 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l 163 (362)
+++|+.+.|.|++|+|||||+.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999998544
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0091 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0092 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4789999999999999988874
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0061 Score=51.79 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999854
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.03 Score=55.81 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=53.5
Q ss_pred hccCCCCCChhHHHHHHHHH--HhcC---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEe
Q 018040 246 VTENGENWSMGQRQLVCLAR--VLLK---------------KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIA 308 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAr--al~~---------------~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~it 308 (362)
.......+||||+|-.-+|. |+++ .-.+++|||+ +-+|.+..+..++.++++ |.=+|++|
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEEC
Confidence 33345568999999544433 3222 1258999999 999999999999999866 66777888
Q ss_pred cChhhhh-hcCeEEEEe
Q 018040 309 HRITSVI-DSDMVLLLS 324 (362)
Q Consensus 309 H~l~~~~-~~Dri~vl~ 324 (362)
=. .+. .+|.++.+-
T Consensus 450 P~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE--NISPERGTTYKLV 464 (483)
T ss_dssp SS--SCCCSSSEEEECC
T ss_pred cc--hhhhccCceEEEE
Confidence 77 444 488888765
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.01 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0097 Score=49.92 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999987654
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=52.33 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0045 Score=53.16 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=4.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=52.87 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|.+++|.|+.||||||+.+.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997664
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.018 Score=49.51 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=25.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++..-+ --.|.-+.|.|+||+|||||...+..
T Consensus 6 ~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3444443 34588999999999999999988765
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.012 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
...+.|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998765
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.013 Score=52.46 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+|.++.+.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999987654
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=52.14 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.+|.++.+-|+.||||||+++.|..-+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0083 Score=57.41 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=22.8
Q ss_pred cCCCCCChhHHHHHHHHHHh---cC--CCCEEEEeCCC
Q 018040 248 ENGENWSMGQRQLVCLARVL---LK--KSKVLVLDEAT 280 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral---~~--~p~illLDEPt 280 (362)
+.|.++|+||+||.+++|+| ++ +++++++|||+
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 55677999999999999999 77 89999999997
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.092 Score=60.48 Aligned_cols=34 Identities=29% Similarity=0.240 Sum_probs=29.9
Q ss_pred ceeeeee--EEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 131 LVLRGLT--CTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 131 ~vL~~is--l~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
+.|+++. .-+++|+.+.++||+|+|||||...+.
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4677776 469999999999999999999998876
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=50.89 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.12 Score=48.54 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
+.+++|+||+- .|.......+.+.+.+-..+..+|++|++.+.
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 57899999974 35566666677777554445677888888753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.87 E-value=0.0095 Score=54.09 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++.+++|.|+.||||||+.+.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.016 Score=51.55 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++..++.|+||.||||+|..+.|+--+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998544
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.019 Score=53.03 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
-.++++|.+|+|||||++.|.|-...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCcee
Confidence 47899999999999999999987543
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=56.36 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++|+||+|||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999988654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.018 Score=53.80 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+-+++++|+.|+|||||++.+.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999988753
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4678999999999999999999986
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.0041 Score=56.40 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..++| +.|.||+|+|||||+++++...
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33444 7899999999999999999743
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.015 Score=55.89 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++..++++|++|+|||||++.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5788999999999999999999986
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.017 Score=56.67 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999884
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.019 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|++++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.023 Score=48.93 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh-----------hhhhcCeEEEEeC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT-----------SVIDSDMVLLLSY 325 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~-----------~~~~~Dri~vl~~ 325 (362)
+++++++||.-- +++.....+..... .+..|++..++.+ .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999854 55443333322222 3778888888554 3345999987764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.41 E-value=0.014 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHH-HHcC
Q 018040 145 KTGIVGRTGSGKSTLIQT-LFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~-l~gl 166 (362)
.++++|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999998 5554
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.013 Score=55.81 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.0073 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3689999999999999988764
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.34 E-value=0.0062 Score=59.94 Aligned_cols=37 Identities=30% Similarity=0.261 Sum_probs=28.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
.+++++|++|+||||++..|++.+.....+|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999876444456553333
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.018 Score=54.91 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.026 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.029 Score=53.38 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=26.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.+.++++---.++|+|.++||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 455566665557999999999999999998864
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.031 Score=49.13 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999987664
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.023 Score=57.66 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.|+|--
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999864
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.025 Score=56.11 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.|=.++|+|++|+|||||++.|+|-
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3556999999999999999999874
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.005 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.026 Score=53.38 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=29.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
.+|..+.|.||+|+||||+++.++..+......+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 34678999999999999999999988764434445444
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.029 Score=58.46 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++=.++|+|+.|+|||||+++|+|--
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45579999999999999999999853
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.13 Score=46.06 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=37.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecC-----------hhhhhhcCeEEEEe
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR-----------ITSVIDSDMVLLLS 324 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------l~~~~~~Dri~vl~ 324 (362)
.+.+++++||.--..| ...+.+.+.+ .+..||+..++ ...+..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 4445555544 57899999999 23445599998765
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.025 Score=57.82 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
--+++|+|+.|+|||||++.|+|--
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999864
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.037 Score=52.29 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
--+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999998875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 362 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-69 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-65 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-60 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-56 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-56 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-50 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-29 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-23 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-23 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-15 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 216 bits (552), Expect = 1e-69
Identities = 69/258 (26%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 94 PNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTG 153
P+ I+ QG +DI + +Y + +L+ + + G VG +G
Sbjct: 5 VGAQPIEIK----------QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 54
Query: 154 SGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL-D 212
GKSTLI + R + T+G I IDG +I LR+++ ++ QD +F +V N+
Sbjct: 55 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 114
Query: 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272
DEE+ EA + + ++ V E G S GQ+Q + +AR+ L
Sbjct: 115 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 174
Query: 273 VLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332
+L+LDEAT+++D ++++IQ L D T + +AHR++++ +D ++++ G I E
Sbjct: 175 ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 234
Query: 333 SPTRLLENKSSSFAQLVA 350
+ L+ + ++ L +
Sbjct: 235 THRELIAKQ-GAYEHLYS 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 204 bits (521), Expect = 6e-65
Identities = 75/239 (31%), Positives = 131/239 (54%), Gaps = 3/239 (1%)
Query: 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172
G+++ + Y LR + G +VGR+GSGKST+ + R + G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 173 LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN--LDPLEEYADEEIWEALDKCQ 230
I +DG D+ L LR++++++ Q+ +F +V NN EEY+ E+I EA
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 231 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 290
+ + K + L++ + ENG S GQRQ + +AR LL+ S +L+LDEAT+++DT ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 291 IQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
IQ L + + T + IAHR++++ +D ++++ G+I E + + LL + +AQL
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLH 248
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 192 bits (488), Expect = 4e-60
Identities = 68/236 (28%), Positives = 123/236 (52%), Gaps = 1/236 (0%)
Query: 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174
++ ++ RY P P++L + + G GIVGR+GSGKSTL + + R P G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 175 AIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL-DPLEEYADEEIWEALDKCQLGN 233
IDG D++ + LR ++ ++ QD + S+ +N+ + E++ A +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 234 EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293
+ + + V E G S GQRQ + +AR L+ K+L+ DEAT+++D ++++I
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 294 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349
+ + TVI IAHR+++V ++D ++++ G I E LL S ++ L
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 183 bits (465), Expect = 1e-56
Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 6/245 (2%)
Query: 110 WPSQGEVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168
+G V + Y LVL+GLT T G T +VG GSGKST+ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 169 PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEAL 226
PT G + +DG + L +++ + Q+P +F S+ N+ ++ EEI A
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 227 DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
K + + ++ V E G S GQRQ V LAR L++K VL+LD+AT+++D
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 287 TDNLIQHTL--GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSS 344
+ ++ L +V+ I ++ V +D +L L G I E + +L+E K
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GC 244
Query: 345 FAQLV 349
+ +V
Sbjct: 245 YWAMV 249
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 180 bits (459), Expect = 8e-56
Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 3/224 (1%)
Query: 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189
+LR ++ G +G GKST+ L R +PTAG I IDG I +I L +
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74
Query: 190 RSRLSIIPQDPTMFEGSVHNNLD--PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVT 247
RS++ + QD + G++ NL +Y DE++W+ LD + V +L + V
Sbjct: 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVG 134
Query: 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITI 307
E G S GQRQ + +AR L+ K+L+LDEATAS+D+ +++++Q L T + I
Sbjct: 135 ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVI 194
Query: 308 AHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351
AHR+++++D+D + + G I L+ +A+ V+E
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 167 bits (425), Expect = 3e-50
Identities = 55/275 (20%), Positives = 108/275 (39%), Gaps = 23/275 (8%)
Query: 77 LENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGL 136
+EN E + E R + + V L + P VL+ +
Sbjct: 5 MENVTAFWEEGFGEL---LEKVQQSNGDRKH--SSDENNVSFSHLCLVGNP----VLKNI 55
Query: 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196
G I G TGSGK++L+ + +E + G+I G R+S
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFC 102
Query: 197 PQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256
Q + G++ N+ Y + + CQL ++ K + + + E G S G
Sbjct: 103 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGG 162
Query: 257 QRQLVCLARVLLKKSKVLVLDEATASVDTAT-DNLIQHTLGQHFSDCTVITIAHRITSVI 315
QR + LAR + K + + +LD +D T + + + + + ++ T I + ++ +
Sbjct: 163 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR 222
Query: 316 DSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350
+D +L+L G + + + L + ++L+
Sbjct: 223 KADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 111 bits (278), Expect = 5e-29
Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 38/258 (14%)
Query: 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174
++ + L RY H VL+G++ G I+G +GSGKST ++ + + +P+ G I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 175 AIDGIDISSIGLHD-------------LRSRLSIIPQDPTMF----------EGSVHNNL 211
++G +I+ + D LR+RL+++ Q ++ E +
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271
+ A E + L K + + + S GQ+Q V +AR L +
Sbjct: 120 LSKHD-ARERALKYLAKVGIDERAQGKYPV----------HLSGGQQQRVSIARALAMEP 168
Query: 272 KVLVLDEATASVD-TATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE 329
VL+ DE T+++D +++ T++ + H + S V+ L G IE
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 330 EFDSPTRLLENKSSSFAQ 347
E P ++ N S Q
Sbjct: 229 EEGDPEQVFGNPQSPRLQ 246
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (275), Expect = 8e-29
Identities = 52/244 (21%), Positives = 101/244 (41%), Gaps = 26/244 (10%)
Query: 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174
EV + L R+ + L T G ++G +G GK+T ++ + + EPT G I
Sbjct: 6 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 175 AIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEY-------ADEEIWEAL 226
D++ L +S++ Q ++ +V+ N+ + D+ + A
Sbjct: 64 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 227 DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286
+ Q+ E L + S GQRQ V +AR ++ + VL++DE +++D
Sbjct: 122 ELLQI-------EELLNRYPAQ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 287 TDNLIQHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343
++ + Q T I + H + D + +++ G + + SPT + +S
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230
Query: 344 SFAQ 347
F
Sbjct: 231 VFVA 234
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 109 bits (273), Expect = 1e-28
Identities = 61/248 (24%), Positives = 109/248 (43%), Gaps = 27/248 (10%)
Query: 116 VDIHGLQVRYAPHLPLV--LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
+ + + + + L ++ G G++G +G+GKSTLI+ + + PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 174 IAIDGIDISSIGLHD---LRSRLSIIPQDPTMF-EGSVHNNLD-PLEEY------ADEEI 222
+ +DG +++++ + R ++ +I Q + +V N+ PLE +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282
E L LG++ L S GQ+Q V +AR L KVL+ DEAT++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 283 VDTATDNLIQHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339
+D AT I L T++ I H + V D V ++S G + E D+ + +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 340 NKSSSFAQ 347
+ + AQ
Sbjct: 231 HPKTPLAQ 238
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (263), Expect = 3e-27
Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 9/224 (4%)
Query: 116 VDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
+ + + Y + L+ + G I+G +GSGKST++ + + +PT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 174 IAIDGIDISSIGLHDL----RSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDK 228
+ ID I + + +L R ++ + Q + + N++ + ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 229 CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288
+ E K E S GQ+Q V +AR L +++ D+ T ++D+ T
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 289 NLIQHTLG--QHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEE 330
I L TV+ + H I + ++ L G +E
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 102 bits (255), Expect = 4e-26
Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 22/220 (10%)
Query: 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191
L L+ G +VG G+GKSTL+ + + G I G + + L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 72
Query: 192 RLSIIPQDPTMFEGSV--HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249
+ + Q T + H + E+ + L+ ++ +
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLGRS 122
Query: 250 GENWSMGQRQLVCLARVLLK-------KSKVLVLDEATASVDTATDNLIQHTLGQ-HFSD 301
S G+ Q V LA V+L+ ++L+LDE S+D A + + L
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 302 CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
++ +H + + + LL G + +L
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 95.8 bits (238), Expect = 1e-23
Identities = 45/236 (19%), Positives = 105/236 (44%), Gaps = 12/236 (5%)
Query: 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173
G V + L+ R +L+G++ G G++G G+GK+T ++ + +++P++G+
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 174 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN 233
+ + G ++ H++R +S +P++ + N+ +E + A ++
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEA-----GAYRNMQGIEYLRFVAGFYASSSSEIEE 112
Query: 234 EVRK--NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291
V + L ++ + +S G + + +AR L+ ++ +LDE T+ +D +
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 292 QHTLGQHFSDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345
+ L Q + I ++ ++ D + L+ G I E + L E +
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 94.2 bits (234), Expect = 2e-23
Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 26/200 (13%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
+I L V Y VL +T T G G G GK+TL++T+ ++P G I
Sbjct: 4 EIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
Query: 177 DGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEY-----ADEEIWEALDKCQ 230
+G+ I ++ ++ +P++ + SV + L + EI +AL+ +
Sbjct: 61 NGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE 115
Query: 231 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 290
+ + +K S G + V LA LL +++ VLD+ ++D + +
Sbjct: 116 VLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK 163
Query: 291 IQHTLGQHFSDCTVITIAHR 310
+ ++ + + ++ I+ R
Sbjct: 164 VLKSILEILKEKGIVIISSR 183
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 95.0 bits (236), Expect = 2e-23
Identities = 44/247 (17%), Positives = 101/247 (40%), Gaps = 28/247 (11%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
V + + + +R ++ G ++G +G GK+T ++ + + EP+ G I
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 176 IDGIDISSIGLHDLR----SRLSIIPQDPTMFE--GSVHNNLDPLE------EYADEEIW 223
I ++ ++++ Q ++ N PL+ + D+ +
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283
E + L + + +L S GQRQ V L R +++K +V ++DE +++
Sbjct: 122 EVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 284 DTATDNLIQHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
D ++ L Q T I + H + D + +++ G++++ SP + +
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
Query: 341 KSSSFAQ 347
+++F
Sbjct: 231 PANTFVA 237
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.3 bits (234), Expect = 6e-23
Identities = 52/238 (21%), Positives = 91/238 (38%), Gaps = 15/238 (6%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
+ + + L G++ + G T I+G GSGKSTLI + ++ G +
Sbjct: 5 LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 176 IDGIDISSIGLHDL-RSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGN 233
+ DI++ +L + Q P + +V NL E E +L +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 234 EVRKNEGK---------LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284
+ + K L S GQ +LV + R L+ K++V+DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 285 -TATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
++ H L T + I HR+ V++ D + ++ G I ++N
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 93.1 bits (231), Expect = 1e-22
Identities = 44/243 (18%), Positives = 93/243 (38%), Gaps = 26/243 (10%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
V + + + + V + + G VG +G GKSTL++ + + T+G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFE--GSVHNNLDPLE------EYADEEIWEALD 227
I ++ + ++ Q ++ N L+ E ++ + + +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287
QL + + + L S GQRQ V + R L+ + V +LDE +++D A
Sbjct: 117 VLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 288 DNLIQHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSS 344
++ + T+I + H + +D +++L G + + P L +
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225
Query: 345 FAQ 347
F
Sbjct: 226 FVA 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 91.6 bits (227), Expect = 4e-22
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 14/216 (6%)
Query: 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200
+G ++G TG+GKS ++ + IV+P G + ++G DI+ L R + +PQD
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDY 79
Query: 201 TMFE--GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258
+F N L E + + E L+ + S G+R
Sbjct: 80 ALFPHLSVYRNIAYGLRNVERVERDRRVREM---AEKLGIAHLLDRKPAR----LSGGER 132
Query: 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLG--QHFSDCTVITIAHRITSVID 316
Q V LAR L+ + ++L+LDE ++VD T ++ L Q D ++ + H +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 317 -SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351
+D V ++ G I E L K+ A+ ++
Sbjct: 193 LADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 91.1 bits (226), Expect = 6e-22
Identities = 44/230 (19%), Positives = 97/230 (42%), Gaps = 14/230 (6%)
Query: 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176
++ L V Y ++G+ G ++G G+GK+T + + +V G I
Sbjct: 8 EVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 177 DGIDISSIGLHDLRSR-LSIIPQDPTMFEG-SVHNNLDPLEEYA--DEEIWEALDKCQLG 232
+G DI++ H + ++++P+ +F +V+ NL E I L+
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE----- 120
Query: 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD-TATDNLI 291
+ +L+ R+ + G S G++Q++ + R L+ + K+L++DE + + +
Sbjct: 121 -WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 292 QHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340
+ + T++ + + + +L G I + LL+N
Sbjct: 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 89.0 bits (220), Expect = 4e-21
Identities = 46/241 (19%), Positives = 98/241 (40%), Gaps = 13/241 (5%)
Query: 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174
+ + + + + L + G + GI+G +G+GK+T ++ + + P+ G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 175 AIDGIDISSIGLHDLRSR---LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQL 231
D ++S G + + ++ Q +++ NL E A + K ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTW-----ALYPNLTAFENIAFPLTNMKMSKEEI 117
Query: 232 GNEVRK--NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289
V + + + S Q+Q V LAR L+K +L+LDE +++D +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 290 LIQHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFA 346
+ + Q T++ ++H + +D V +L G + + P L +N S
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
Query: 347 Q 347
Sbjct: 238 A 238
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 85.5 bits (211), Expect = 5e-20
Identities = 47/240 (19%), Positives = 99/240 (41%), Gaps = 24/240 (10%)
Query: 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175
++I L ++ L L+ G I+G TG+GK+ ++ + P +G I
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 176 IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-----SVHNNLDPLEEYADEEIWEALDKCQ 230
+DG D++ L + ++ + Q+ ++F ++ + + + + + +
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 231 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 290
+ + + +N L S G++Q V LAR L+ K+L+LDE +++D T
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 291 IQHTLG--QHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347
+ L + TV+ I H T +D + ++ G + + P + E
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 70.8 bits (172), Expect = 3e-15
Identities = 20/193 (10%), Positives = 44/193 (22%), Gaps = 28/193 (14%)
Query: 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203
MK I G G GK+TL++ + + A + + ++ +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 204 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263
+ + + +E
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAY 92
Query: 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323
+ KV+++DE + H + V+ + L
Sbjct: 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152
Query: 324 SYGLIEEFDSPTR 336
++ E R
Sbjct: 153 PGAVLIELTPENR 165
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (131), Expect = 1e-09
Identities = 20/170 (11%), Positives = 45/170 (26%), Gaps = 7/170 (4%)
Query: 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGS 206
+ G G GK+TLI +++ + + + G + + +
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 207 VHNNLDPL------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260
+ D +E L L N + V + + +
Sbjct: 65 GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124
Query: 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310
+ R L ++L L++ + +T +R
Sbjct: 125 IQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENR 173
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 35.1 bits (79), Expect = 0.004
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 143 GMKTGIVGRTGSGKSTLIQTL 163
GMK I GR +GKS+L+ L
Sbjct: 1 GMKVVIAGRPNAGKSSLLNAL 21
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.88 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.8 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.4 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.33 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.19 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.99 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.16 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.93 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.68 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.57 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.56 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.55 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.49 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.44 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.44 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.36 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.35 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.34 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.31 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.29 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.28 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.24 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.17 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.15 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.14 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.13 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.11 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.11 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 97.1 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.1 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.1 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.08 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.07 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.07 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.03 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.01 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.0 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.99 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.92 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.89 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.87 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.84 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.82 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.8 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.79 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.79 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.79 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.78 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.77 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.76 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.75 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.75 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 96.75 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.73 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.72 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.71 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.71 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.7 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.66 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.66 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.65 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.57 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 96.56 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.55 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.54 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.47 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.46 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.43 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.41 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.4 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.4 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.37 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.36 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.34 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.32 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.29 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.28 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.25 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.24 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.23 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.22 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.22 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.18 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.16 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.13 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.1 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.1 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.1 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.08 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.07 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.07 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.07 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.06 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.04 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.03 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.0 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.98 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.96 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.94 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.94 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.91 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.9 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.88 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.86 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.86 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.8 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.77 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.76 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.74 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.73 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.7 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.65 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.61 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.61 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.6 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.6 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.6 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.59 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.59 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.59 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.57 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.56 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.52 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.51 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.49 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.49 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.49 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.48 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.44 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.44 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.42 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.42 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.42 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.41 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.37 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.36 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.33 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.33 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.32 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.32 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.31 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.31 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.27 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.25 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.23 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.19 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.16 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.13 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.12 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.09 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.09 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.07 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.04 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.01 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.98 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.92 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.92 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.84 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.81 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.8 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.78 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.75 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.7 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.66 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.62 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.53 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.53 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.48 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.47 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.4 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.39 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.37 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.37 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.35 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.3 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.28 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.27 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.25 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.24 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.1 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.01 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.99 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.92 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.89 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.85 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.78 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.58 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.58 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.55 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.44 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.44 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.23 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.21 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.95 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.9 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.71 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.45 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.44 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.87 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.7 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.7 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.37 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.2 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 90.77 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.61 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.52 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.4 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.39 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 90.37 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 89.92 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 89.77 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.66 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.62 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.6 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.42 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.25 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 88.97 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.08 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.49 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 86.56 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.97 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.93 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 85.55 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 85.42 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.01 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 84.75 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 84.65 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 84.63 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 84.55 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.23 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.02 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.55 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 82.14 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.59 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 81.59 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 81.27 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 80.79 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-71 Score=506.58 Aligned_cols=238 Identities=29% Similarity=0.455 Sum_probs=227.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
+|+|+||+|+|++..+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++.+++|++|+
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 48999999999877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
||||+|.+|++|++||+.+.. ....++++++++.+++.+++..+|.++++.++++|.+|||||||||+|||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 999999999999999998765 4678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||||||||+||+.+++.+++.|++..+++|+|+||||++.+..||||+||++|+|++.|+|+++++++.+.|+++++.+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999998889999999999999988999999999999999999999998778899988765
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.6e-70 Score=503.70 Aligned_cols=239 Identities=28% Similarity=0.458 Sum_probs=227.3
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
..+.|+++||+|+|++..+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++.+++|+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 35689999999999887778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 192 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
+|+||||++.+|++||+|||.+.. ..++++++++++.+++.+++..+|.++++.++++|.+|||||||||+|||||+++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998754 4678999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|+|||||||||+||+.+++.+++.|++..+++|+|+||||++.+..||||++|++|+|++.|+|+||+++ ++.|++++.
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~~ 251 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYS 251 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHT
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999999999999999988889999999999999988999999999999999999999987 567888875
Q ss_pred H
Q 018040 351 E 351 (362)
Q Consensus 351 ~ 351 (362)
.
T Consensus 252 ~ 252 (255)
T d2hyda1 252 I 252 (255)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-69 Score=500.67 Aligned_cols=239 Identities=31% Similarity=0.487 Sum_probs=227.3
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+.|+|+||+|+|++...++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||+++..++...+|++
T Consensus 11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred ceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence 46799999999998776679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|+||||++.+|++|+++|+.+.. ..++++++++++.+++.+++..+|.|+++.++++|.+|||||||||+|||||+++
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~ 170 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987653 4678999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|+|||||||||+||+.+++.+++.|+++.+++|+|+||||++.+..||||+||++|+|++.|+|+||+++ ++.|++++.
T Consensus 171 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~~ 249 (253)
T d3b60a1 171 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHK 249 (253)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHH
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999999999999999988889999999999999988999999999999999999999987 578999987
Q ss_pred HH
Q 018040 351 EY 352 (362)
Q Consensus 351 ~~ 352 (362)
.+
T Consensus 250 ~Q 251 (253)
T d3b60a1 250 MQ 251 (253)
T ss_dssp HT
T ss_pred Hc
Confidence 54
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2e-69 Score=496.64 Aligned_cols=235 Identities=31% Similarity=0.528 Sum_probs=221.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++||+|+|++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++.+.+|++|||
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 7999999999765 369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCcccHHhhcCcC--CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 196 IPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|||+|.+|++|++||+.+. ....+++++++++.+++.+++...+.++++.++++|.+|||||||||+|||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999764 34678888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||||||||+||+.+++.+++.|++..+++|+|+||||++.+..||||++|++|+|++.|+|+||+++ ++.|++++.++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHHH
Confidence 9999999999999999999999988889999999999999988999999999999999999999987 67788887643
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-68 Score=491.65 Aligned_cols=238 Identities=30% Similarity=0.407 Sum_probs=221.1
Q ss_pred CcccEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 018040 112 SQGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 190 (362)
..+.|+++||+|+|++. ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||+++..++.+.+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 35679999999999764 34699999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEcCCCCCCcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 191 SRLSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
++|+||||+|.+|++|+++|+.+.. .....+..++.+..++.+++..++.++++.++++|.+|||||||||+|||||+
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence 9999999999999999999998752 35667788888899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHH
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFA 346 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~ 346 (362)
++|+|||||||||+||+.++..+++.|.+..+ ++|+|+||||++.+..||||++|++|+|++.|+|+||+++ ++.|+
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHH
Confidence 99999999999999999999999999987643 7899999999999988999999999999999999999987 56888
Q ss_pred HHHH
Q 018040 347 QLVA 350 (362)
Q Consensus 347 ~~~~ 350 (362)
+|++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.8e-61 Score=437.66 Aligned_cols=219 Identities=22% Similarity=0.322 Sum_probs=187.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++||+++|++. .||+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 5 ~~I~v~nlsk~yg~~--~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 5 VEVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred CeEEEEEEEEEECCE--EEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 359999999999764 699999999999999999999999999999999999999999999999999887753 5689
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|||||++.+|+ .||+||+.+.. ..+ ++++.++++.+++.+ ..++++.+|||||||||+|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHh
Confidence 99999999996 49999997643 233 344566777777654 344556678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
||+.+|++|||||||++||+.++..+++.+++.. .++|+|+||||++.+.. ||||++|++|+|++.|+|++++++|.
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999999863 38999999999999988 99999999999999999999999987
Q ss_pred cHHHH
Q 018040 343 SSFAQ 347 (362)
Q Consensus 343 ~~~~~ 347 (362)
..|.+
T Consensus 230 ~~~~~ 234 (239)
T d1v43a3 230 SVFVA 234 (239)
T ss_dssp BHHHH
T ss_pred CHHHH
Confidence 66643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9e-61 Score=433.22 Aligned_cols=214 Identities=22% Similarity=0.360 Sum_probs=191.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++||+++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. |++|||
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhccee
Confidence 789999999974 389999999999999999999999999999999999999999999999999887754 678999
Q ss_pred EcCCCCCCcc-cHHhhcCcC----CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 196 IPQDPTMFEG-SVHNNLDPL----EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|||++.+|+. ||+||+.+. .....+++.++++.+++.+..++ .+.+|||||||||+|||||+++
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSC
T ss_pred eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhC-----------ChhhCCHHHhcchhhhhhhhcc
Confidence 9999999965 999999652 22346778889998887665444 3455799999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
|++|||||||++||+.++..+++.+++.. .+.|||+||||++++.. ||||++|++|+|++.|+|+|++++|...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 99999999999999999999999998853 47899999999999988 99999999999999999999998876554
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-61 Score=435.04 Aligned_cols=216 Identities=20% Similarity=0.305 Sum_probs=165.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++||+++|++. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++|||
T Consensus 1 Iev~nv~k~yg~~--~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceeee
Confidence 6899999999754 69999999999999999999999999999999999999999999999999987764 3578999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
|||++.+|+. ||+||+.+... ..++++.++++.+++.+..++. +.+|||||||||+|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999965 99999976422 1235577888888876655444 455799999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSS 344 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~ 344 (362)
+++|++|||||||++||+.++..+++.+++.. .++|+|+|||+++.+.. ||||++|++|+|++.|+|+|++++|...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCH
Confidence 99999999999999999999999999998853 58999999999999988 9999999999999999999999988766
Q ss_pred HH
Q 018040 345 FA 346 (362)
Q Consensus 345 ~~ 346 (362)
|.
T Consensus 226 ~v 227 (232)
T d2awna2 226 FV 227 (232)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.7e-61 Score=438.10 Aligned_cols=221 Identities=19% Similarity=0.285 Sum_probs=193.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r~ 191 (362)
.|+++||+++|+.+...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+ ...+|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 58999999999755456899999999999999999999999999999999999999999999999987654 234577
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
+||||||++.+|+. ||+||+.+.. ..+ ++++.++++.+++.+..++. +.+|||||||||+|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------p~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCC-----------hhhCCHHHHhHHHH
Confidence 89999999999975 9999997532 223 35577888888876554444 44579999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||+++|++|||||||++||+.++..+++.++++. .+.|+|+||||++.+.. ||||++|++|+|++.|+|++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999998863 38999999999999977 999999999999999999999998
Q ss_pred CCcHHH
Q 018040 341 KSSSFA 346 (362)
Q Consensus 341 ~~~~~~ 346 (362)
|...|.
T Consensus 232 P~~~~~ 237 (242)
T d1oxxk2 232 PVSIQV 237 (242)
T ss_dssp CSSHHH
T ss_pred CCCHHH
Confidence 876664
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.3e-60 Score=435.44 Aligned_cols=220 Identities=19% Similarity=0.313 Sum_probs=192.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH----Hh
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD----LR 190 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~----~r 190 (362)
.|+++||+++|++. .||+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .|
T Consensus 3 ~i~v~nl~k~yg~~--~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECCE--EEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 58999999999754 5999999999999999999999999999999999999999999999999987654332 36
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++||||||++.+|+. ||+||+.+. ...+ ++++.++++.+++.+..++ .+.+|||||||||+
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHHH
T ss_pred ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHH
Confidence 789999999999975 999999652 1222 3457778888887654444 34557999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+++|++|||||||++||+.++..+++.++++. + |.|||+||||++.+.. ||||++|++|+|++.|+++|+++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998863 3 8999999999999988 99999999999999999999999
Q ss_pred cCCcHHHH
Q 018040 340 NKSSSFAQ 347 (362)
Q Consensus 340 ~~~~~~~~ 347 (362)
+|...|.+
T Consensus 230 ~P~~~~~~ 237 (240)
T d1g2912 230 KPANTFVA 237 (240)
T ss_dssp SCSBHHHH
T ss_pred CCCCHHHH
Confidence 88777643
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-60 Score=435.80 Aligned_cols=219 Identities=26% Similarity=0.392 Sum_probs=192.6
Q ss_pred EEEEEEEEEeCCCCC--ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 018040 116 VDIHGLQVRYAPHLP--LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~~--~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 190 (362)
|+++||+++|+.+.. .||+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+..+ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999976532 4799999999999999999999999999999999999999999999999998887654 56
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcC---CCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPL---EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~---~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++||||||++.+|+. ||+||+.+. ... .++++.++++.+++.+.. +..+.+|||||||||+
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 789999999999865 999998641 111 245678889988876543 3445568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.++..+++.|+++. + |.|+|+||||++.+.. ||||++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999863 3 8999999999999988 99999999999999999999998
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
+|...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCChH
Confidence 876555
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2e-58 Score=426.61 Aligned_cols=223 Identities=27% Similarity=0.388 Sum_probs=192.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---------
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--------- 185 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--------- 185 (362)
.|+++||+++|++. .||+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+
T Consensus 2 ~Lev~nl~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECCE--EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 48999999999754 5999999999999999999999999999999999999999999999999986432
Q ss_pred ----HHHHhcCcEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 186 ----LHDLRSRLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 186 ----~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
...+|++||||||++.+|+. ||.+|+.+. .... .+++.++++.+++.+.... +.+.+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPVH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGGG
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhc----------cCccc
Confidence 12467789999999999864 999998642 1222 3556778888888764322 22345
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||+||||++.+.. ||||+||++|+|++
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 79999999999999999999999999999999999999999998864 57999999999999988 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHH
Q 018040 331 FDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~~~~~ 349 (362)
.|+|+|++++|...|.+-+
T Consensus 230 ~g~~~ev~~~P~~~~~~~l 248 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRLQQF 248 (258)
T ss_dssp EECHHHHHHSCCSHHHHHH
T ss_pred EcCHHHHHhCCCCHHHHHH
Confidence 9999999998877775443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-58 Score=420.34 Aligned_cols=209 Identities=22% Similarity=0.324 Sum_probs=178.5
Q ss_pred EEEEEEEEEeCCCCC--ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----
Q 018040 116 VDIHGLQVRYAPHLP--LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL---- 189 (362)
Q Consensus 116 i~~~~l~~~y~~~~~--~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~---- 189 (362)
|+++||+++|+.... .||+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975432 37999999999999999999999999999999999999999999999999999887654
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcC------CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~------~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
|++||||||++.+++. ||+||+.+. ...+. +++.+.++.+++.+. ..+..+.+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh----------hhcCChhhCCHHHH
Confidence 3569999999999865 999998641 12222 345566667766432 22334556899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecCh
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~ 334 (362)
|||+|||||+++|++||||||||+||+.++..+++.++++. .++|+|+||||++.+..||||++|++|+|+++|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999999863 47999999999998866999999999999999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.4e-57 Score=415.56 Aligned_cols=215 Identities=19% Similarity=0.339 Sum_probs=185.0
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh-cC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~ 192 (362)
..|+++||+++|++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.+..+ ..
T Consensus 5 ~~Lev~~l~k~yg~~--~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeeEEEEECCE--EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 358999999999754 599999999999999999999999999999999999999999999999999988877654 45
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC--CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE--EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~--~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
++|+||++.+|+. |++||+.+.. .... +++.++++.+ .++....++.+.+|||||||||+|||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF----------PRLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC----------HHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----------hChHHHHhCchhhCCHHHHHHHHHHH
Confidence 9999999999975 9999985422 1111 2222232221 12445566677889999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+++|++|||||||+|||+.++..+++.++++. +|+|||++||+++.+.. ||||++|++|+|++.|+++|++++
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999999864 57999999999999988 999999999999999999999875
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-57 Score=426.08 Aligned_cols=217 Identities=23% Similarity=0.335 Sum_probs=195.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.+.|+|+++ .+ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+
T Consensus 38 ~i~~~~~~~--~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~ 100 (281)
T d1r0wa_ 38 NVSFSHLCL--VG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS 100 (281)
T ss_dssp --CHHHHHH--TT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred cEEEEEcCC--CC--CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEE
Confidence 455666554 32 3699999999999999999999999999999999999999999999998 489
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|+||++++|++|+++|+.+.....+.+.+.+++.+++..++..++.++++.+++++.+|||||||||+|||||+++|+||
T Consensus 101 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il 180 (281)
T d1r0wa_ 101 FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180 (281)
T ss_dssp EECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccch
Confidence 99999999999999999987777888889999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 349 (362)
|||||||+||+.+++.+++.+ ....+++|+|+|||+++.+..||||++|++|+|++.|+|+||++. .+.|...+
T Consensus 181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred hhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHH
Confidence 999999999999999988764 445568999999999999888999999999999999999999875 44565544
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-56 Score=410.54 Aligned_cols=224 Identities=21% Similarity=0.382 Sum_probs=190.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
|.|+++||+++|++. .||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+. ...+|+.+
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEeEEEEECCE--EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhE
Confidence 469999999999764 699999999999999999999999999999999999999999999999998764 56778899
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC---CCCHH----HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE---EYADE----EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~---~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||+||++.+|+. |+.||+.+.. ..... .+.++++.+++.+. ..++..+||||||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHHH
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-----------HhhhhhhCCHHHHHHHHHHH
Confidence 999999998865 9999986432 22233 34555555665443 34445568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC-
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS- 342 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~- 342 (362)
||+++|++|||||||+|||+.+++.+.+.+++.. +|+|||++||+++++.. ||||++|++|+|++.|+|+++.++..
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~ 226 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTC
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCC
Confidence 9999999999999999999999999999998864 68999999999999998 99999999999999999999987532
Q ss_pred cHHHHHHHH
Q 018040 343 SSFAQLVAE 351 (362)
Q Consensus 343 ~~~~~~~~~ 351 (362)
..+.+.+.+
T Consensus 227 ~~~~~~f~~ 235 (238)
T d1vpla_ 227 QNIEEVFEE 235 (238)
T ss_dssp SSHHHHHHH
T ss_pred chHHHHHHH
Confidence 334555443
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.4e-57 Score=415.27 Aligned_cols=213 Identities=23% Similarity=0.279 Sum_probs=183.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc-Cc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS-RL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~-~i 193 (362)
.|+++||+++|++. .||+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...++.+.++ .|
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred eEEEEEEEEEECCe--EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 58999999999764 5999999999999999999999999999999999999999999999999999988877654 59
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC-----------------CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE-----------------YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~-----------------~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
+|+||++.+|+. ||.||+.+... .. .++..++++.+++.+. .++.+.+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAGE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGGG
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchh-----------ccCchhh
Confidence 999999998864 99999854210 01 1234455555555433 3344556
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||||+|||||+.+|++|||||||+|||+.+++.+++.+++.. +|+|||+|||+++.+.. ||||+||++|+|++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE
Confidence 89999999999999999999999999999999999999999998864 68999999999999987 99999999999999
Q ss_pred ecChhHHhhc
Q 018040 331 FDSPTRLLEN 340 (362)
Q Consensus 331 ~g~~~~l~~~ 340 (362)
.|+++|+.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EecHHHHhhc
Confidence 9999997653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.6e-56 Score=403.18 Aligned_cols=215 Identities=25% Similarity=0.370 Sum_probs=183.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
+++ ++.++|++. .+ ||||++. ||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. |++|||
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCcee
Confidence 566 578999753 34 7999995 689999999999999999999999999999999999999887653 678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC-CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE-EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|||++.+|+. ||+||+.+.. ... ++++.++++.+++.+..++ .+.+|||||||||+|||||++
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~-----------~~~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR-----------KPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTC-----------CGGGSCHHHHHHHHHHHHHTT
T ss_pred eccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhC-----------ChhhCCHHHHHHHHHHHHHhc
Confidence 9999999975 9999997642 222 3456777777777654444 445579999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHH
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFA 346 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~ 346 (362)
+|++|||||||++||+.++..+++.+++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++.++....
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred cCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHH
Confidence 999999999999999999999999998864 37999999999999988 999999999999999999999987665554
Q ss_pred HHH
Q 018040 347 QLV 349 (362)
Q Consensus 347 ~~~ 349 (362)
+++
T Consensus 224 ~fl 226 (240)
T d2onka1 224 EFL 226 (240)
T ss_dssp HHG
T ss_pred HHh
Confidence 443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-51 Score=370.39 Aligned_cols=208 Identities=21% Similarity=0.273 Sum_probs=180.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
-++++||+++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++...+..+++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 47899997543 699999999999999999999999999999999976 58999999999999888888888899
Q ss_pred EEcCCCCC-CcccHHhhcCcC--CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC--
Q 018040 195 IIPQDPTM-FEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK-- 269 (362)
Q Consensus 195 ~v~Q~~~l-~~~tv~enl~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~-- 269 (362)
|++|+... |..++.+++.+. .....+.+.++++.+++.+. +++++.+|||||||||+|||||++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhH-----------hCcChhhcCHHHHHHHHHHHHHHhhC
Confidence 99998764 456888887542 22345667778887776543 344455689999999999999997
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 270 -----KSKVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 270 -----~p~illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+|+||||||||+|||+.++..+.+.+++. .+|+|||++||+++.+.. ||||++|++|+|++.|+++|++++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 77999999999999999999999999886 468999999999999887 999999999999999999999875
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.2e-47 Score=338.04 Aligned_cols=188 Identities=23% Similarity=0.364 Sum_probs=156.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++||+++|+. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcEE
Confidence 4899999999953 5999999999999999999999999999999999999999999999999875 3577899
Q ss_pred EEcCCCCCCcc-cHHhhcCc-----CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 195 IIPQDPTMFEG-SVHNNLDP-----LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
|+||++.++.. |+.+|+.+ .....++++.++++.+++.+ ++ ++..+||||||||++|||||+
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~----~~~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LK----KKLGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TT----SBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------cc----cccCcCCCcHHHHHHHHHHHh
Confidence 99999988754 89998753 23456777888888776543 11 223458999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeC
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++|+++||||||+|||+.+++.+++.+.+..+ +.++|+++|++ ..||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh---hhcchhhheee
Confidence 99999999999999999999999999987643 33444444443 46999998854
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.80 E-value=1.6e-21 Score=167.24 Aligned_cols=154 Identities=12% Similarity=0.004 Sum_probs=101.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc-----CCCCCCcccHHhhcCcCCCCCH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP-----QDPTMFEGSVHNNLDPLEEYAD 219 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-----Q~~~l~~~tv~enl~~~~~~~~ 219 (362)
+++|+||||||||||+++|+|.++|+.|.+.+++.+..... .+.++.. +...++..+...+.....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK-----KRTGFRIITTEGKKKIFSSKFFTSKKLVGS---- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-----------CCEEEEEETTCCEEEEEETTCCCSSEETT----
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHH-----HhhhhhhhhhhHHHHHHhhhhhhhhhhhhh----
Confidence 58999999999999999999999999999999887653322 1222221 111111111111111100
Q ss_pred HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH- 298 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~- 298 (362)
.+.... . ..+|+|+++|.++++++.++|+++++|||....+. ...+.+.+.+.
T Consensus 73 ---------~~~~~~-----------~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l 126 (178)
T d1ye8a1 73 ---------YGVNVQ-----------Y----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIM 126 (178)
T ss_dssp ---------EEECHH-----------H----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHH
T ss_pred ---------hhcCcc-----------h----hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHh
Confidence 000000 0 12489999999999999999999999998654332 23333444332
Q ss_pred c-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 299 F-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 299 ~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
. .+.|+|+++|+.+....||++..+.+|++++.+.
T Consensus 127 ~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 127 HDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred ccCCCEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 2 3689999999987777799999999999988654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=3.7e-13 Score=124.27 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=66.0
Q ss_pred CCCChhHHHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE--Ee
Q 018040 251 ENWSMGQRQLVCLARV----LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL--LS 324 (362)
Q Consensus 251 ~~LSgGqrQRv~iAra----l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v--l~ 324 (362)
..+|+|||+...++.. ...+|+++++|||-++|+|...+.+.+.|++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 4689999999877665 34568999999999999999999999999988778899999999999999999865 66
Q ss_pred CC
Q 018040 325 YG 326 (362)
Q Consensus 325 ~G 326 (362)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.99 E-value=4.9e-10 Score=106.74 Aligned_cols=73 Identities=27% Similarity=0.332 Sum_probs=62.1
Q ss_pred CCCChhHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE
Q 018040 251 ENWSMGQRQLVCLARVL----LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral----~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
..||||||.+++||-.+ ..++++++||||+++||+.....+.+.|.+.. .+.-+|+|||++..+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998876443 56788999999999999999999999998764 345699999999999999998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.16 E-value=1.2e-05 Score=70.29 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=34.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHH-hhc-CCceEEEEecChhhhh
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLG-QHF-SDCTVITIAHRITSVI 315 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~-~~~-~~~tvi~itH~l~~~~ 315 (362)
+.+..++|+||+..|-|+.....+...+- .+. .+..++++||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 35667999999999999976655444433 322 3678999999876654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=4e-05 Score=67.29 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=32.8
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHH-HHHHhhc--CCceEEEEecChhhh
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQ-HTLGQHF--SDCTVITIAHRITSV 314 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~l~~~ 314 (362)
..+..++|+||+..|=++.....+. ..+..+. .+..++++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 4456799999999999997665554 3444442 346788888876544
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=6.4e-07 Score=74.19 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
.+.|.||+|+|||||++.+++.+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4889999999999999999999877666665443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=1.6e-06 Score=72.62 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=28.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+++.++++.+| ++.|+|||||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 367778888775 9999999999999999999744
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=1.3e-05 Score=67.25 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
|.++.|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999999876653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.55 E-value=2.1e-05 Score=68.57 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 176 (362)
+|+..+++|+||+|||||++.|.+-.....|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 58999999999999999999999877777787753
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=1.2e-05 Score=65.61 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
+++|+|++|||||||++.|...+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999875543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.44 E-value=3.4e-05 Score=63.17 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
.|+++.|.||+||||||+.+.|...+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence 58999999999999999999999875321 355555
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00067 Score=59.60 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
.+|+++.|.|++|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986655
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=0.00035 Score=60.58 Aligned_cols=44 Identities=11% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
+.+++++||+-. |.......+.+.+.+......+|++|++++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 567999999854 77777778888887655566789999988654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.35 E-value=0.00034 Score=61.88 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=25.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
|+++..=+.+|+++.|.|++|+||||++.-++
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 44433236889999999999999999987665
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.34 E-value=2.2e-05 Score=68.71 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~ 175 (362)
+|+.++++|+||+|||||++.|.|-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4889999999999999999999998776778876
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.31 E-value=3.1e-05 Score=63.66 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPT 170 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~ 170 (362)
.+++|+|++|||||||++.|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 378999999999999999888776643
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.29 E-value=5.5e-05 Score=61.77 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++|-+|.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999998654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.28 E-value=5.7e-05 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..++|+||+|||||||.+.|+.-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999865
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=6.7e-05 Score=61.19 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.+.++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=9.8e-05 Score=63.32 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.|.++.|+||||||||||.+.|+--.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999998876543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.15 E-value=0.00011 Score=59.99 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++|-.++|.||+||||||+.+.|+--+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999987653
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.14 E-value=9.6e-05 Score=60.16 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.++|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.13 E-value=0.00032 Score=60.35 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=15.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
..++++|||+|+||||.+-=|+..
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999887555543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.11 E-value=0.00021 Score=59.23 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999874
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.11 E-value=0.00012 Score=58.57 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=23.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
+++.|.|++||||||+.+.|..- ..|.+.++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEech
Confidence 57889999999999999987542 235555543
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.10 E-value=0.0019 Score=56.61 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=47.6
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNE 96 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~ 96 (362)
+..|.++++.+..++.|...+..++..+...+..++++.+|.+|+.++++.++|
T Consensus 265 ~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 265 SVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp STTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 356788888888888888888899999999999999999999999999987765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.10 E-value=0.00011 Score=61.12 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|||.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.10 E-value=0.0014 Score=56.31 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
+++|..+.|.|++|||||||+.-++
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.08 E-value=0.00012 Score=68.24 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
++++..+.+.+|+|||||||||++.+|.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445556699999999999999999984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.07 E-value=0.00011 Score=61.75 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|++|||||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.07 E-value=0.0011 Score=54.66 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHc
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
+-+.+.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.03 E-value=9.6e-05 Score=60.65 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTA 171 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~ 171 (362)
.+++|.|+.||||||+++.|+-.+....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999987654433
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00012 Score=60.86 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+|-++.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.00 E-value=0.00014 Score=58.91 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
.++.|.||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4789999999999999999998754 3455544
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.00016 Score=57.75 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.|+||+||||||+.+.|+--+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998755
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.92 E-value=0.00019 Score=58.13 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.|+||+||||||+.+.|+--+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.89 E-value=0.00016 Score=66.30 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=29.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 176 (362)
+.|.-+.|.|++||||||++++|++.++|..=-|.+
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 345568999999999999999999999886544455
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.00025 Score=58.04 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.|+|+|+.|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.84 E-value=0.00023 Score=58.69 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.|+|+|++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00027 Score=59.02 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
...+.|+||||||||||++.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 3579999999999999999888543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=0.00017 Score=59.81 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl 166 (362)
|||+|++++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0003 Score=57.64 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.79 E-value=0.00028 Score=59.03 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.|+||||||||||++.|+.-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.79 E-value=0.00031 Score=57.95 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+|+|+|++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.79 E-value=0.00031 Score=56.00 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999974
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00031 Score=59.76 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++||.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987665
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.77 E-value=0.0016 Score=57.67 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++..-+.+.||+|+|||+|++++++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3445588999999999999999998873
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.76 E-value=0.00023 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-+++|||++|||||||++.+.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.75 E-value=0.00031 Score=60.39 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|+.|||||||++.|+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00034 Score=56.35 Aligned_cols=24 Identities=46% Similarity=0.663 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
|=.++++|+.|+|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999975
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.75 E-value=0.0036 Score=54.87 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=46.1
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPN 95 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~ 95 (362)
+..|.++++.+..++.+...+..++..+...+.+++++.++++|+.++++.++
T Consensus 270 ~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 270 AISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 35678898888888888888888888999999999999999999999998654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.73 E-value=0.00035 Score=55.72 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
++.|+|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.72 E-value=0.00036 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.71 E-value=0.00026 Score=58.48 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl 166 (362)
|||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00051 Score=57.08 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+++.|.||+|||||||+.-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877664
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.70 E-value=0.00038 Score=58.18 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..++.|+||.||||||+.+.|+--+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998644
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.66 E-value=0.00041 Score=58.28 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.|+|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.66 E-value=0.00048 Score=57.36 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++|=.+.|+||.||||||+.+.|+--
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999943
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.65 E-value=0.00041 Score=58.24 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.|+||||||||||.+.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.57 E-value=0.0044 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.198 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..++.++||+|+||||.+-=|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999998886666544
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=96.56 E-value=0.0018 Score=57.51 Aligned_cols=49 Identities=27% Similarity=0.445 Sum_probs=34.0
Q ss_pred EEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 145 KTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
-++|+|+.|+|||||+..|+ |..+ ..|++. +|..+.+..+++..+.+++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKE-RRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSS-SCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCch-hhccch-hccccccchHHHHHhCCeE
Confidence 37999999999999999885 4332 346554 5666666666666665543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.00027 Score=58.00 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.|+|+|++++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998854
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.54 E-value=0.00051 Score=60.62 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|++|+|||||++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.00023 Score=57.39 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.46 E-value=0.00066 Score=55.27 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998665
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.00074 Score=56.47 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~ 177 (362)
-.++.|+||.||||||+.+.|+.-+ |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 3479999999999999999998766 445554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.41 E-value=0.00053 Score=57.42 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++++.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.40 E-value=0.00074 Score=55.29 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++.|.|++||||||+.+.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3677889999999999999987764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.40 E-value=0.00069 Score=55.47 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.+.|+|++||||||+.+.|+--+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999997543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.37 E-value=0.00085 Score=55.04 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999996544
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.36 E-value=0.0011 Score=53.52 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|+.|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999998743
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.34 E-value=0.00068 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|.||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997544
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.00094 Score=55.55 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.29 E-value=0.00099 Score=55.70 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++.++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997553
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0024 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.25 E-value=0.00095 Score=55.50 Aligned_cols=21 Identities=48% Similarity=0.597 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.24 E-value=0.001 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999874
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.23 E-value=0.00099 Score=55.07 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl 166 (362)
+||+|+..||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.22 E-value=0.0011 Score=54.59 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.22 E-value=0.0011 Score=53.96 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.++|+.||||||+.+.|+--+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6688999999999999998655
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.18 E-value=0.00088 Score=55.84 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
=+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.16 E-value=0.001 Score=56.87 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.+++++||+|+||||.+-=|+..+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998875556544
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.13 E-value=0.0011 Score=57.81 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=26.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
.-+.+.||+|||||||.+.|++.+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 35889999999999999999997753 3455554
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.0009 Score=57.36 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++.+++|-|+-||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999998764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.10 E-value=0.0014 Score=55.82 Aligned_cols=41 Identities=29% Similarity=0.327 Sum_probs=30.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDI 181 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i 181 (362)
++|-++.+.|.+||||||+.+.|..-+.. ..-.+.+||..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 46889999999999999999998743321 113577888654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.10 E-value=0.0014 Score=55.57 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC---CCCccEE
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV---EPTAGLI 174 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I 174 (362)
+++|-||+||||||+.+.|+--+ ..++|.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 57888999999999999998544 3344543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.00081 Score=61.01 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 789999999999999999987764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0082 Score=51.66 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=34.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
.+++|+||.=. |.......+.+.+.+...+..+|++|++.+-+.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 159 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccC
Confidence 56999999854 777777788888876556788999999887654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0015 Score=55.07 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=24.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc---CCCCCccEE
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR---IVEPTAGLI 174 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g---l~~p~~G~I 174 (362)
+++|.||.||||||+.+.|+- +...+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 899999999999999999984 444445555
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.07 E-value=0.0017 Score=61.05 Aligned_cols=24 Identities=46% Similarity=0.650 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+||+|++|+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 389999999999999999999643
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0014 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.04 E-value=0.0015 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.|+|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0054 Score=51.86 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
+.+++|+||+= .|...+...+.+.+.+-.++..+|++|++++.+
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence 47799999863 344566777777776655566778899998754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0017 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 488999999999999998875
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0018 Score=55.02 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=23.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
+++|+++.|.||+|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999997665
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.98 E-value=0.0017 Score=52.82 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999998764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.96 E-value=0.0018 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997544
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.94 E-value=0.0018 Score=52.30 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999998764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.00096 Score=61.06 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.-++||.||.|||||||+..|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999986554
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.002 Score=54.34 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999988654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.002 Score=54.87 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++|-+++|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999876543
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.88 E-value=0.0019 Score=54.54 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~ 164 (362)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0019 Score=52.28 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988875
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.86 E-value=0.0017 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998865
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0022 Score=52.37 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0041 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.77 E-value=0.0024 Score=51.56 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987664
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.76 E-value=0.0025 Score=51.91 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=26.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.++|.++++.|+=||||||+.|.++.-+-.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 468999999999999999999999876643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.74 E-value=0.0026 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.73 E-value=0.0026 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+||.||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999998654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.70 E-value=0.0031 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHH
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTL 163 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l 163 (362)
+++|+++.|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 889999999999999999998543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.65 E-value=0.0023 Score=60.05 Aligned_cols=29 Identities=28% Similarity=0.217 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.++-.+.|.||+||||||++.+++..+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 45678999999999999999999886543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.0026 Score=51.38 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0031 Score=51.87 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 388999999999999988875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.003 Score=51.49 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999998764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.60 E-value=0.0028 Score=54.40 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++||+|...||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.60 E-value=0.0031 Score=53.69 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
+|.+++|-|+-||||||+++.|.-.+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 6999999999999999999999866653 4443
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.60 E-value=0.0035 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
+++|+++.|.|++|+|||||..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999986655
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.59 E-value=0.003 Score=51.91 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987774
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.59 E-value=0.0035 Score=53.70 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHH
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTL 163 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l 163 (362)
+++|+++.|.||+|||||||..-+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 789999999999999999998644
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0028 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0032 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++.+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988865
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.56 E-value=0.0029 Score=53.96 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh--cCeEEEE
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID--SDMVLLL 323 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~--~Dri~vl 323 (362)
.++.++++||-- .+-......+...+........+|+++++.+.+.. .+|..++
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i 163 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 163 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred CCceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccccc
Confidence 367899999952 33344455566666655556778888888775533 3554443
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.52 E-value=0.0033 Score=54.17 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+..+.|.||.|+|||||++.++.-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999887653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0036 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999988753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.0036 Score=53.91 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+.|.||+|+||||++++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998754
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0033 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
|++|+++.|.|++|||||||...++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999999877763
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.49 E-value=0.0023 Score=54.83 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHc
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
+..++++|||+|+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999987744443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0034 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++||.|..||||||..+.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999988643
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0032 Score=51.11 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0034 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.44 E-value=0.0017 Score=58.18 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++||.|+|||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999877654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.0039 Score=50.10 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0019 Score=55.26 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=19.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+++++||+|+||||.+-=|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999988755554443
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0038 Score=50.38 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999988765
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.41 E-value=0.0072 Score=50.03 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=25.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
.++.-.+.+ .|.=+.|.|++|+|||||...+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 455555555 78899999999999999987765
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.008 Score=49.23 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.36 E-value=0.0035 Score=56.57 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.-+.++||+|+|||+|.++|+..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 4456899999999999999998753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.33 E-value=0.0032 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCc
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIVEPTA 171 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~~p~~ 171 (362)
+.+.||.|+||||+.++|+..+....
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCc
Confidence 67999999999999999998776543
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0061 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 488999999999999999887543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=0.0039 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0082 Score=48.50 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999988774
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.31 E-value=0.0044 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.31 E-value=0.0025 Score=52.25 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=18.0
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~ 164 (362)
+++++|++|+|||||++.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999874
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0046 Score=50.28 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999977654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0046 Score=50.50 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0043 Score=50.60 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
++.|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999988764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.005 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.19 E-value=0.0097 Score=48.14 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
++.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.16 E-value=0.0054 Score=52.70 Aligned_cols=28 Identities=21% Similarity=0.586 Sum_probs=24.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTA 171 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~ 171 (362)
..+.|.||.|+||||+++.++..+....
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 5788999999999999999998776433
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.0053 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999987654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.12 E-value=0.0047 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+.+.||.|+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999998643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0049 Score=50.04 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.09 E-value=0.01 Score=47.92 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
++.|+|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.0054 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.0053 Score=49.97 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.04 E-value=0.0059 Score=50.89 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999986553
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.0059 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.0055 Score=50.91 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018040 146 TGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~g 165 (362)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0062 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999988873
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.97 E-value=0.006 Score=55.42 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-++||.||.|||||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHH
Confidence 47999999999999999988864
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.92 E-value=0.004 Score=50.65 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=9.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0038 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=17.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.0074 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
..-+.+.||+|+|||+++++|+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 34578999999999999999998764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.81 E-value=0.014 Score=48.08 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=24.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++.--+ .-.|.=+.|.|+||+|||||...+..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3443333 44588899999999999999876653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0073 Score=48.79 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999987654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.78 E-value=0.0048 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++.++|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999987653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.75 E-value=0.0086 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+||+|...+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.70 E-value=0.007 Score=52.69 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+.+.||.|+|||++.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4789999999999999999874
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.0084 Score=48.27 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++|..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999987763
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.0076 Score=53.78 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=26.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.|-+|++.+|+|++|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999999888643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.53 E-value=0.0096 Score=50.64 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=23.0
Q ss_pred EEEEEcCCCccHHHHHHHH-HcCCCCCcc
Q 018040 145 KTGIVGRTGSGKSTLIQTL-FRIVEPTAG 172 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l-~gl~~p~~G 172 (362)
++.++|.+|+|||||++-+ .+-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999765 455667766
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.0091 Score=49.09 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=18.0
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~ 164 (362)
+++|+|..|+|||||++.+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999998765
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.48 E-value=0.0089 Score=53.02 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 145 KTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
-+||+|..|||||||+..|+ |.... .|++. +|..+.+..+.+..+.+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-cccee-cCceEEeccHHHHhcCCcc
Confidence 37999999999999998884 55443 46653 4444444444554444443
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.47 E-value=0.0096 Score=48.98 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=22.7
Q ss_pred EEEEEcCCCccHHHHHHHHH--cCCCCCcc
Q 018040 145 KTGIVGRTGSGKSTLIQTLF--RIVEPTAG 172 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~--gl~~p~~G 172 (362)
++.|+|.+|+|||||++-+. --+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68899999999999998773 22457888
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.40 E-value=0.012 Score=48.01 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=24.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
++.++|..|+|||||++-+..-..|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 579999999999999988776556677743
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.0096 Score=50.40 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
+.+++++||.-. +.......+...+........+++++++.+.+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~ 145 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKII 145 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhhh
Confidence 467999999653 444555666666666555678888888876653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.0083 Score=53.23 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-+|+|+||.++|||||++.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.37 E-value=0.01 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999976653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.35 E-value=0.0081 Score=56.95 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=26.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
=+.++||+|||||-|.+.|++++... -+..|...+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~f 85 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKF 85 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeeccee
Confidence 47899999999999999999987532 355554433
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.0084 Score=52.81 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=31.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCEe
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV-EPTAGLIAIDGID 180 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-~p~~G~I~i~g~~ 180 (362)
=+++|.++-|.||+|||||||+-.++... .+..--+++|.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 37889999999999999999986665544 3333346666654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.28 E-value=0.018 Score=47.12 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=22.6
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
++-.-.|.=+.|.|++|+|||||.-.+..
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 33345688999999999999998866553
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.011 Score=50.08 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
+.+++++||.- .+.......+...+.+..+...+++++++...+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHhH
Confidence 35699999974 5677777888888877666667777777766543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.011 Score=48.86 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.8
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~ 164 (362)
+++++|+.|+|||||++.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997665
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.24 E-value=0.01 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.+.||.|+|||+|.++|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999854
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.10 E-value=0.015 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999975
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.01 E-value=0.015 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999965
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.99 E-value=0.014 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.92 E-value=0.0071 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
--+.|+|+.|+|||||++.+.++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 34789999999999999999999987
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.89 E-value=0.0098 Score=51.30 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.85 E-value=0.014 Score=50.99 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.+.||.|+|||+++++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7799999999999999999864
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.78 E-value=0.071 Score=44.39 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=35.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
+.+++|+||+ -.|...+...+.+.|.+-.++...|++|++.+.+
T Consensus 79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 79 TRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 4689999995 4567788888889888766678889999998754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.58 E-value=0.02 Score=47.82 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
-+||+|.-.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.58 E-value=0.017 Score=48.66 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018040 146 TGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~g 165 (362)
++|+|..+||||||+..|++
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.55 E-value=0.017 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+||||..-+|||||+++|+|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999886
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.44 E-value=0.018 Score=51.31 Aligned_cols=22 Identities=45% Similarity=0.685 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+||||..-||||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999975
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.019 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++++|=|+-||||||+++.|.--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 5789999999999999999987654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.23 E-value=0.015 Score=51.36 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=31.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE-EEECCEe
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL-IAIDGID 180 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~-I~i~g~~ 180 (362)
=++.|.++-|.||+|+|||||+..++....-..|. |+||.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 36789999999999999999986666544434454 5666654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.21 E-value=0.016 Score=51.08 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=30.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCE
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGI 179 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~ 179 (362)
++.|.++-|.||+|||||||...++....-..| -++||.+
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 788999999999999999999777765543333 3566654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.95 E-value=0.025 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+.++||+|+|||.|.+.|+..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCcchhHHHHHHHHhhcc
Confidence 478999999999999999998764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.90 E-value=0.025 Score=46.09 Aligned_cols=28 Identities=43% Similarity=0.526 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC---CCCCcc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI---VEPTAG 172 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl---~~p~~G 172 (362)
++.++|..|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5789999999999999887533 234545
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.71 E-value=0.036 Score=48.88 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=25.5
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
=+.+-+|++++|+|+.|+|||||+.-++.
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 36789999999999999999999877754
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.45 E-value=0.028 Score=51.66 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=30.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-ECCE
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-IDGI 179 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-i~g~ 179 (362)
.++++..+.+.||.|+||||+.++|++.+. |.+. +++-
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s 188 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLP 188 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECc
Confidence 346788999999999999999999999865 4443 4443
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.44 E-value=0.032 Score=48.97 Aligned_cols=33 Identities=42% Similarity=0.684 Sum_probs=26.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC-----------CCCccEEEEC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV-----------EPTAGLIAID 177 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~-----------~p~~G~I~i~ 177 (362)
.+||||-.-+|||||+++|++-- .|.-|.|.+.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 68999999999999999999653 3445777654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.87 E-value=0.03 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++.|.|.=|||||||++-++.-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998874
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.038 Score=51.18 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=25.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhh
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSV 314 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~ 314 (362)
++++||.-+-.... .+.+.+.+. ..|..+++++..++.+
T Consensus 279 ~l~lDE~~~~~~~~---~l~~~l~~~Rk~Gv~~~l~~Qs~~ql 318 (433)
T d1e9ra_ 279 WLFIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTSQL 318 (433)
T ss_dssp EEEESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHHHH
T ss_pred EEEechHhhhcccH---HHHHHHHHhCCCCceEEEEeccHHHH
Confidence 67789976544322 244555543 3578999999997665
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.70 E-value=0.043 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+||+|.-.+|||||++.|++..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999998753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.37 E-value=0.052 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
..+++|+|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.20 E-value=0.053 Score=45.74 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=42.1
Q ss_pred cCCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhc-CCceEEEEecCh-hhhhh--cCeEEEEeCCEEEEecChhH
Q 018040 268 LKKSKVLVLDEATASV-DTATDNLIQHTLGQHF-SDCTVITIAHRI-TSVID--SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 268 ~~~p~illLDEPts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~l-~~~~~--~Dri~vl~~G~i~~~g~~~~ 336 (362)
+...+++++|+--.=. ++..+..+..++.... .++.+|+++... ..+.. .|=.-.+..|-++...++.+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~ 168 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNK 168 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHH
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcH
Confidence 4578999999974332 4667788888887754 567777777643 22221 12122256777776644444
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=90.77 E-value=0.045 Score=48.25 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=28.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
+.|-+|++++|+|++|+|||+|+..+..-..-+...+
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~ 98 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVIC 98 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEE
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhhcccCcee
Confidence 5788999999999999999999976544444344333
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.61 E-value=0.016 Score=44.25 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.8
Q ss_pred EeCCcEEEEEcCCCccHHHHH
Q 018040 140 FLGGMKTGIVGRTGSGKSTLI 160 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl 160 (362)
+++|+.+.|.+|+|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 357999999999999999544
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.52 E-value=0.054 Score=49.62 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=23.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
+.++||+|+|||-|.+.|+.++.. .-|.+|-
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~ 101 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA 101 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred eeeeCCCCccHHHHHHHHHhhccc--ceeehhh
Confidence 567899999999999999987632 2455443
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.40 E-value=0.094 Score=47.39 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=24.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA 175 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~ 175 (362)
+|.|=|+-||||||+++.|..-+....+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~ 38 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLY 38 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEE
Confidence 5778899999999999999987765433333
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.39 E-value=0.045 Score=49.33 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=23.6
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-...++| .+.++||.|+|||.|.++|++.+
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3455554 56668999999999999999864
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=90.37 E-value=0.097 Score=45.74 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=36.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
++-..+.+.||.++||||++++|..++ +..|.+ ++. -+......+..+--.+.+|+
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~~-~~~f~l~~l~~k~~~~~~e~ 157 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NWT-NENFPFNDCVDKMVIWWEEG 157 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CTT-CSSCTTGGGSSCSEEEECSC
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--ccc-CCCccccccCCCEEEEEeCC
Confidence 455788999999999999999999998 555543 221 12233444544444444554
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=89.92 E-value=0.085 Score=44.77 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018040 146 TGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~g 165 (362)
++++|...+|||||+..|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999953
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.77 E-value=0.077 Score=44.88 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=17.6
Q ss_pred EEEEcCCCccHHHHHHHHH
Q 018040 146 TGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~ 164 (362)
++++|..++|||||+..|+
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7999999999999998884
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.66 E-value=0.06 Score=41.41 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=22.5
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
.+.+-+++|+||.= .+|..+...+...++..
T Consensus 91 ~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 91 SGGAYDIIICDECH-STDATSILGIGTVLDQA 121 (136)
T ss_dssp GGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred hhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence 44677999999985 46887776676666544
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.62 E-value=0.081 Score=47.36 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDG 178 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g 178 (362)
.+.++||+|+|||.+.+.|+..+. ....-+.+|.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~ 89 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 89 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence 477999999999999999998752 2233455654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.60 E-value=0.087 Score=46.12 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-+.||||.|+|||+++.-++..+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999988654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=0.097 Score=43.59 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-+.||||.|.|||+++.-|+..+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 36799999999999999988654
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.25 E-value=0.091 Score=47.43 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 176 (362)
+|.|=|+=||||||+++.|.-.+......|.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 58889999999999999999887654334443
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.97 E-value=0.051 Score=48.09 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.6
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
.=+.+-+|++++|+|+.|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 33688999999999999999999986544
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.08 E-value=0.11 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|+|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478899999999999999987654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.49 E-value=0.18 Score=43.78 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
+=.++|||..-+|||||++.|.|--..
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~ 138 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIA 138 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEEecCccchhhhhhhhhccceE
Confidence 345999999999999999999996543
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=86.56 E-value=0.079 Score=46.13 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=17.1
Q ss_pred EeCCcEEEEEcCCCccHHH
Q 018040 140 FLGGMKTGIVGRTGSGKST 158 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKST 158 (362)
+.+|+.+.|.+|+|||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4579999999999999996
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.97 E-value=0.16 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHH---cCCC
Q 018040 146 TGIVGRTGSGKSTLIQTLF---RIVE 168 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~---gl~~ 168 (362)
+||+|.-|+|||||+..|+ |...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 8999999999999999885 6543
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.93 E-value=0.19 Score=43.02 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.7
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~ 164 (362)
-++++|..++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998874
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.55 E-value=0.082 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCccHHHHHHH
Q 018040 142 GGMKTGIVGRTGSGKSTLIQT 162 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~ 162 (362)
.|+-+.+++|+|+|||+..-+
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~ 77 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLA 77 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHH
Confidence 588889999999999976433
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.42 E-value=0.17 Score=43.41 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=17.5
Q ss_pred EEEEcCCCccHHHHHHHHH
Q 018040 146 TGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~ 164 (362)
++|+|..++|||||+..|+
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7999999999999998883
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.01 E-value=0.18 Score=44.79 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=17.5
Q ss_pred eCCcEEEEEcCCCccHHHHH
Q 018040 141 LGGMKTGIVGRTGSGKSTLI 160 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl 160 (362)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 35888899999999999975
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=84.75 E-value=0.16 Score=42.34 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=26.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
+++-..+.+.||.++|||++..+|+.++. |.+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~---G~v 81 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ---GAV 81 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT---CEE
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC---CEE
Confidence 35567899999999999999999999863 554
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=84.65 E-value=0.4 Score=43.40 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.9
Q ss_pred CcEEEEEcCCCccHHHHHH
Q 018040 143 GMKTGIVGRTGSGKSTLIQ 161 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~ 161 (362)
+.++.|.||-|+||||++.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCeEEEEcCCCCCceehHH
Confidence 6789999999999999874
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| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=84.63 E-value=0.18 Score=44.17 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.6
Q ss_pred EEEEEcCCCccHHHHH
Q 018040 145 KTGIVGRTGSGKSTLI 160 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl 160 (362)
.+.|.|+-||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4678899999999765
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| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=84.55 E-value=0.31 Score=38.94 Aligned_cols=56 Identities=23% Similarity=0.097 Sum_probs=44.0
Q ss_pred CCCEEEEeCCCCCCCH--HHHHHHHHHHHhhcCCceEEEEecChh-hh-hhcCeEEEEeC
Q 018040 270 KSKVLVLDEATASVDT--ATDNLIQHTLGQHFSDCTVITIAHRIT-SV-IDSDMVLLLSY 325 (362)
Q Consensus 270 ~p~illLDEPts~LD~--~~~~~i~~~l~~~~~~~tvi~itH~l~-~~-~~~Dri~vl~~ 325 (362)
+.+++||||-..+++. -.+..+.+.|+...++.-+|++-++.. .+ ..||.|--|..
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 4799999999998875 468899999987666778888888763 34 44999987764
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| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.23 E-value=0.22 Score=43.07 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.5
Q ss_pred EEEEEcCCCccHHHHH
Q 018040 145 KTGIVGRTGSGKSTLI 160 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl 160 (362)
-+.|+|+-||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4679999999999764
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| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.02 E-value=0.33 Score=43.26 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=17.0
Q ss_pred CCcEEEEEcCCCccHHHHH
Q 018040 142 GGMKTGIVGRTGSGKSTLI 160 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl 160 (362)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4788999999999999975
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| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.55 E-value=0.28 Score=43.78 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCccHHHHH
Q 018040 142 GGMKTGIVGRTGSGKSTLI 160 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl 160 (362)
.|++..+-|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5788899999999999997
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| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.14 E-value=0.39 Score=36.57 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH-cCCCCCcc-EEE-ECCEe
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAG-LIA-IDGID 180 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G-~I~-i~g~~ 180 (362)
.|=.+.+-|-+||||||+.++|. .|.+-..| .|. +||.+
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~n 46 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 46 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCC
Confidence 46678889999999999999884 55553333 354 35543
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| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.59 E-value=0.28 Score=44.97 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=17.0
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018040 146 TGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~g 165 (362)
+.|||++|.|||+++.-|+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHH
Confidence 46899999999999976664
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| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=81.59 E-value=0.46 Score=36.93 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCccHHH-HHHHHHcC
Q 018040 143 GMKTGIVGRTGSGKST-LIQTLFRI 166 (362)
Q Consensus 143 Ge~~~ivG~nGsGKST-Ll~~l~gl 166 (362)
|.+..|+||=.||||| |++.+-+.
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 7788999999999999 66776554
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| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.27 E-value=0.29 Score=40.06 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.8
Q ss_pred CCcEEEEEcCCCccHHHHH
Q 018040 142 GGMKTGIVGRTGSGKSTLI 160 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl 160 (362)
.|+-+.+..|+|||||+..
T Consensus 39 ~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 39 SGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TCSCEEEECSSHHHHHHHH
T ss_pred cCCCEEEEcCCCCchhHHH
Confidence 4677889999999999763
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| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=80.79 E-value=0.49 Score=40.36 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPT 170 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~ 170 (362)
+.-+.|.|+.|+||+++.++|...-+..
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~ 50 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKLSDRS 50 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence 4567899999999999999998755443
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