Citrus Sinensis ID: 018042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHcHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccccccccccccHEEEEEEHEHHHHcHHEcccccccccccccHHHHHHHcHHHHHHHcccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccEHHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEccc
Coil and Loop (DISEMBL)
MAAGMAIAseggdnniyngkITAFVILSCMMAGMGGVIFGYDIgisggvtsmepflekFFPEVHRKMkedtkisnyckfdsqlLTSFTSSLYVAGLVASFVASSVtrafgrkpsvlmGGAAFLAGSALGGAAVNVYMLIFGRLLLGVgvgfanqsvplylsemaparyrgainngfQFSIGIGALAANFINYgteqikggwgWRVSLALAAVPASILTLGalflpetpnsliqRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKAsstaktinhpfKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTiglgrlkvcqlskwiecggsigfgRNMWVKWMNRVrwrkldiytli
Flexible Loop (DISEMBL)
MAAGMAIAseggdnniyNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLkasstaktinhpfkKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIecggsigfgrnmwVKWMnrvrwrkldiytli
Low Complexity Region (SEG)
MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMggaaflagsalggaaVNVYMLIFGRlllgvgvgFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Disordered region (IsUnstruct)
*************NNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET****************************AEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL*
Disordered Region (DISOPRED)
**********************AFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKA*********PFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Disordered Region (DISEMBL)
MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Disordered Region (DISPRO)
************DNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q07423	510	Hexose carrier protein HE	N/A	no	0.872	0.617	0.827	1e-151
Q8L7R8	514	Sugar transport protein 3	yes	no	0.855	0.601	0.664	1e-120
Q41144	523	Sugar carrier protein C O	N/A	no	0.880	0.608	0.611	1e-112
P23586	522	Sugar transport protein 1	no	no	0.872	0.603	0.591	1e-108
Q9FMX3	514	Sugar transport protein 1	no	no	0.878	0.616	0.589	1e-107
Q39228	514	Sugar transport protein 4	no	no	0.872	0.612	0.592	1e-104
Q9SX48	517	Sugar transport protein 9	no	no	0.819	0.572	0.608	1e-102
Q9LT15	514	Sugar transport protein 1	no	no	0.822	0.577	0.598	1e-101
O65413	508	Sugar transport protein 1	no	no	0.847	0.602	0.576	1e-100
Q94AZ2	526	Sugar transport protein 1	no	no	0.861	0.591	0.566	2e-98

>sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1

 Score =  533 bits (1374), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/318 (82%), Positives = 297/318 (93%), Gaps = 3/318 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MAAG+AI SEGG    YNG++T+FV LSCMMA MGGVIFGYDIG+SGGVTSM+PFL+KFF
Sbjct: 1   MAAGLAITSEGGQ---YNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFF 57

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P+V+RKMKEDT+ISNYCKFDSQLLTSFTSSLYVAGLVASF ASSVTRAFGRKPS+L+GG 
Sbjct: 58  PDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGX 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
            FLA +ALGGAAVNVYMLIFGR+LLGVGVGFANQ+VPLYLSEMAP RYRGAINNGFQFS+
Sbjct: 118 VFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSV 177

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
           GIGAL+AN INYGTE+I+GGWGWR+SLA+AAVPA+ILT GALFLPETPNSLIQR +DH++
Sbjct: 178 GIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           AKLMLQRVRGT DV+AE DDL+KAS  ++TI HPFK I++RKYRPQL+MA+AIPFFQQVT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297

Query: 301 GINVIAFYAPLLFRTIGL 318
           GINVIAFYAP+LFRTIGL
Sbjct: 298 GINVIAFYAPILFRTIGL 315

Active uptake of hexoses. Probable glucose/hydrogen symport.
Ricinus communis (taxid: 3988)

>sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/316 (66%), Positives = 261/316 (82%), Gaps = 7/316 (2%)

Query: 10  EGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKE 69
           E    ++  GKIT FV+ SC+MA MGGVIFGYDIG+SGGV SM PFL++FFP+V++  +E
Sbjct: 9   EAMAKSVSGGKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEE 68

Query: 70  DTKI-----SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLA 124
           D +      ++YC F+SQLLTSFTSSLYV+GL+A+ +ASSVTR++GRKPS+ +GG +FLA
Sbjct: 69  DRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLA 128

Query: 125 GSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGA 184
           G+ALGG+A NV MLI  RLLLGVGVGFANQSVPLYLSEMAPA+YRGAI+NGFQ  IGIG 
Sbjct: 129 GAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGF 188

Query: 185 LAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLM 244
           L+AN INY T+ IK   GWR+SLA AA+PASILTLG+LFLPETPNS+IQ   D  K +LM
Sbjct: 189 LSANVINYETQNIKH--GWRISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELM 246

Query: 245 LQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV 304
           L+RVRGTNDV+ E  DL++ASS + T ++ F K++QRKYRP+L+MA+ IPFFQQVTGINV
Sbjct: 247 LRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINV 306

Query: 305 IAFYAPLLFRTIGLGR 320
           +AFYAP+L+RT+G G 
Sbjct: 307 VAFYAPVLYRTVGFGE 322

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/319 (61%), Positives = 246/319 (77%), Gaps = 1/319 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           M A   I   GG+  +Y G +T +V ++C++A MGG+IFGYDIGISGGVTSM+ FL+KFF
Sbjct: 1   MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P V+RK K D   + YC++DSQ LT FTSSLY+A L+AS VAS++TR FGRK S+L GG 
Sbjct: 61  PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
            F AG+ + GAA  V+MLI GR+LLG G+GFANQSVPLYLSEMAP +YRGA+N GFQ SI
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
            IG L AN +NY   +IKGGWGWR+SL  A VPA I+T+G+L LP+TPNS+I+R   H++
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIER-GQHEE 239

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           A+  L+RVRG  DV+ EF DL+ AS  +K + HP++ ++QRKYRP L MA+AIPFFQQ+T
Sbjct: 240 ARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLT 299

Query: 301 GINVIAFYAPLLFRTIGLG 319
           GINVI FYAP+LF TIG G
Sbjct: 300 GINVIMFYAPVLFDTIGFG 318

Ricinus communis (taxid: 3988)

>sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 244/318 (76%), Gaps = 3/318 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           M AG  +  +G     Y GK+T FV+ +C++A MGG+IFGYDIGISGGVTSM  FL++FF
Sbjct: 1   MPAGGFVVGDG--QKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFF 58

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P V+RK +ED   + YC++DS  LT FTSSLY+A L++S VAS+VTR FGR+ S+L GG 
Sbjct: 59  PSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGI 118

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
            F AG+ + G A +V+MLI GR+LLG G+GFANQ+VPLYLSEMAP +YRGA+N GFQ SI
Sbjct: 119 LFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSI 178

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
            IG L A  +NY   +IKGGWGWR+SL  A VPA I+T+G+L LP+TPNS+I+R   H++
Sbjct: 179 TIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIER-GQHEE 237

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           AK  L+R+RG +DV  EFDDL+ AS  +++I HP++ +++RKYRP L MA+ IPFFQQ+T
Sbjct: 238 AKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLT 297

Query: 301 GINVIAFYAPLLFRTIGL 318
           GINVI FYAP+LF TIG 
Sbjct: 298 GINVIMFYAPVLFNTIGF 315

Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 245/319 (76%), Gaps = 2/319 (0%)

Query: 3   AGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPE 62
           AG A   E G    Y G++TAFV+++C++A MGG++FGYDIGISGGV SME FL KFFP+
Sbjct: 2   AGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPD 61

Query: 63  VHRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAA 121
           V R+M+    + + YCK+D++LLT FTSSLY+A L ASF+AS++TR FGRK S+++G  A
Sbjct: 62  VLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLA 121

Query: 122 FLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIG 181
           FL+G+ L G A+N+ MLI GRL LGVGVGFANQSVPLYLSEMAPA+ RGA+N GFQ +I 
Sbjct: 122 FLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAIT 181

Query: 182 IGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKA 241
           IG LAAN +NY T +++ G GWR+SL LA VPA ++ +G  FLP+TPNS+++R  + +KA
Sbjct: 182 IGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILER-GNKEKA 240

Query: 242 KLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG 301
           K MLQ++RGT +VE EF++L  A   AK + HP+  I+Q +YRPQL     IPFFQQ+TG
Sbjct: 241 KEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTG 300

Query: 302 INVIAFYAPLLFRTIGLGR 320
           INVI FYAP+LF+TIG G 
Sbjct: 301 INVIMFYAPVLFKTIGFGN 319

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/319 (59%), Positives = 236/319 (73%), Gaps = 4/319 (1%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MA G    + G  N  YN K+T  V ++C +   GG+IFGYD+GISGGVTSMEPFLE+FF
Sbjct: 1   MAGGFVSQTPGVRN--YNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFF 58

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P V++KMK   + + YC+FDSQLLT FTSSLYVA LV+S  AS++TR FGRK S+ +GG 
Sbjct: 59  PYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGF 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
            F  GSA  G A N+ ML+ GR+LLG GVGFANQSVP+YLSEMAP   RGA NNGFQ +I
Sbjct: 118 TFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAI 177

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
             G + A  INY T Q+KG  GWR+SL LA VPA ++ +GAL LP+TPNSLI+R    ++
Sbjct: 178 IFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT-EE 236

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           AK MLQ +RGTN+V+ EF DL+ AS  +K + HP+K I+  +YRPQL+M   IPFFQQ+T
Sbjct: 237 AKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLT 296

Query: 301 GINVIAFYAPLLFRTIGLG 319
           GINVI FYAP+LF+T+G G
Sbjct: 297 GINVITFYAPVLFQTLGFG 315

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/299 (60%), Positives = 232/299 (77%), Gaps = 3/299 (1%)

Query: 21  ITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFD 80
           +T FVI++C++A MGG++FGYD+GISGGVTSME FL KFFPEV ++M E  + + YCKFD
Sbjct: 21  VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80

Query: 81  SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIF 140
           +QLL  FTSSLY+A L +SFVAS+VTR +GRK S+ +GG AFL GS     A NV MLI 
Sbjct: 81  NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140

Query: 141 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG 200
           GRLLLGVGVGFANQS P+YLSEMAPA+ RGA+N GFQ +I IG L AN INYGT Q+   
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN 200

Query: 201 WGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDD 260
            GWRVSL LAAVPA I+ +G+  LP+TPNS+++R   +++A+ MLQ++RG ++V+ EF D
Sbjct: 201 -GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLER-GKYEQAREMLQKIRGADNVDEEFQD 258

Query: 261 LLKASSTAKTINHPFKKIIQR-KYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGL 318
           L  A   AK +++P+K I Q+ KYRP L+   AIPFFQQ+TGINVI FYAP+LF+T+G 
Sbjct: 259 LCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGF 317

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/299 (59%), Positives = 233/299 (77%), Gaps = 2/299 (0%)

Query: 21  ITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFD 80
           +TAFVI++C++A MGG++FGYD+GISGGVTSME FL KFFP+V  +MK+    + YCKFD
Sbjct: 21  VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80

Query: 81  SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIF 140
           +Q+L  FTSSLY+A LVASF+AS +TR  GRK S+ +GG AFL G+     AVNV MLI 
Sbjct: 81  NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140

Query: 141 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG 200
           GRLLLGVGVGFANQS P+YLSEMAPA+ RGA+N GFQ +I IG L AN INYGT ++   
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKMAQH 200

Query: 201 WGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDD 260
            GWRVSL LAAVPA ++ +G+  LP+TPNS+++R   +++AK ML+++RG ++V+ EF D
Sbjct: 201 -GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLER-GKNEEAKQMLKKIRGADNVDHEFQD 258

Query: 261 LLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLG 319
           L+ A   AK + +P+K I++ KYRP L+   AIPFFQQ+TGINVI FYAP+LF+T+G G
Sbjct: 259 LIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFG 317

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/309 (57%), Positives = 231/309 (74%), Gaps = 3/309 (0%)

Query: 11  GGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKED 70
           G     Y GK+T +V ++C++A MGG+IFGYDIGISGGVT+M+ F +KFFP V+ K K+D
Sbjct: 9   GDGKKEYPGKLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPSVYEKQKKD 68

Query: 71  TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG 130
              + YC+FDS  LT FTSSLY+A L +S VAS VTR FGRK S+L+GG  F AG+ L G
Sbjct: 69  HDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGALLNG 128

Query: 131 AAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI 190
            A  V+MLI GRLLLG G+GF NQSVPLYLSEMAP +YRGA+N GFQ SI IG L AN +
Sbjct: 129 FATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVL 188

Query: 191 NYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRG 250
           N+   +I   WGWR+SL  A VPA I+T+G+L LP+TPNS+I+R    + A+  L+++RG
Sbjct: 189 NFFFSKIS--WGWRLSLGGAVVPALIITVGSLILPDTPNSMIER-GQFRLAEAKLRKIRG 245

Query: 251 TNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP 310
            +D++ E +DL+ AS  +K + HP++ ++QRKYRP L MA+ IP FQQ+TGINVI FYAP
Sbjct: 246 VDDIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHLTMAILIPAFQQLTGINVIMFYAP 305

Query: 311 LLFRTIGLG 319
           +LF+TIG G
Sbjct: 306 VLFQTIGFG 314

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2

 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 180/318 (56%), Positives = 237/318 (74%), Gaps = 7/318 (2%)

Query: 4   GMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEV 63
           G A ++ G +   +  KIT  VI+SC+MA  GG++FGYD+G+SGGVTSM  FLEKFFP V
Sbjct: 5   GFATSANGVE---FEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVV 61

Query: 64  HRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAF 122
           +RK+     K SNYCK+D+Q L  FTSSLY+AGL A+F AS  TR  GR+ ++L+ G  F
Sbjct: 62  YRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFF 121

Query: 123 LAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI 182
           + G AL   A ++ MLI GR+LLG GVGFANQ+VPL+LSE+AP R RG +N  FQ ++ I
Sbjct: 122 IIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTI 181

Query: 183 GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR-KSDHQKA 241
           G L AN +NYGT +IKGGWGWR+SL LA +PA +LT+GAL + ETPNSL++R + D  KA
Sbjct: 182 GILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKA 241

Query: 242 KLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG 301
             +L+R+RGT++VE EF DLL+AS  AK + HPF+ ++QR+ RPQL++A+A+  FQQ TG
Sbjct: 242 --VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTG 299

Query: 302 INVIAFYAPLLFRTIGLG 319
           IN I FYAP+LF T+G G
Sbjct: 300 INAIMFYAPVLFSTLGFG 317

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
225466031	508	PREDICTED: hexose carrier protein HEX6 [	0.875	0.622	0.833	1e-153
47078687	508	putative hexose transporter [Vitis vinif	0.875	0.622	0.833	1e-153
147816021	508	hypothetical protein VITISV_025873 [Viti	0.875	0.622	0.830	1e-152
255539853	510	sugar transporter, putative [Ricinus com	0.872	0.617	0.833	1e-149
1708191	510	RecName: Full=Hexose carrier protein HEX	0.872	0.617	0.827	1e-149
224129904	516	predicted protein [Populus trichocarpa]	0.878	0.614	0.785	1e-147
224139190	509	predicted protein [Populus trichocarpa]	0.880	0.624	0.818	1e-142
356517750	501	PREDICTED: hexose carrier protein HEX6-l	0.878	0.632	0.740	1e-141
356515367	510	PREDICTED: hexose carrier protein HEX6-l	0.878	0.621	0.776	1e-139
357455795	509	Hexose carrier [Medicago truncatula] gi|	0.842	0.597	0.763	1e-137

>gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/319 (83%), Positives = 295/319 (92%), Gaps = 3/319 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MA G+A+ S GG    YNG+IT FV+LSCMMAGMGGVIFGYDIGISGGVTSM+ FL+KFF
Sbjct: 1   MAVGIAVTSHGGH---YNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFF 57

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           PEV+++MKEDTKISNYCKFDSQLLTSFTSSLY+AGLVASFVAS +T+ FGRKP++L GGA
Sbjct: 58  PEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGA 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
           AFL GSALGGAA NVYM+I GR+LLGVGVGFANQ+VPLYLSEMAP RYRGAINNGFQFSI
Sbjct: 118 AFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSI 177

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
           G+GAL+AN IN+GTE+IKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR  D+ K
Sbjct: 178 GVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           A+LMLQRVRGTNDV+AE DDL+KASS AKTIN PFKKI+QRKYRPQL+MA+AIPFFQQVT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297

Query: 301 GINVIAFYAPLLFRTIGLG 319
           GINVIAFYAP+LFR IGLG
Sbjct: 298 GINVIAFYAPVLFRAIGLG 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/319 (83%), Positives = 295/319 (92%), Gaps = 3/319 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MA G+A+ S GG    YNG+IT FV+LSCMMAGMGGVIFGYDIGISGGVTSM+ FL+KFF
Sbjct: 1   MAVGIAVTSHGGH---YNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFF 57

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           PEV+++MKEDTKISNYCKFDSQLLTSFTSSLY+AGLVASFVAS +T+ FGRKP++L GGA
Sbjct: 58  PEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGA 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
           AFL GSALGGAA NVYM+I GR+LLGVGVGFANQ+VPLYLSEMAP RYRGAINNGFQFSI
Sbjct: 118 AFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSI 177

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
           G+GAL+AN IN+GTE+IKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR  D+ K
Sbjct: 178 GVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           A+LMLQRVRGTNDV+AE DDL+KASS AKTIN PFKKI+QRKYRPQL+MA+AIPFFQQVT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297

Query: 301 GINVIAFYAPLLFRTIGLG 319
           GINVIAFYAP+LFR IGLG
Sbjct: 298 GINVIAFYAPVLFRAIGLG 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/319 (83%), Positives = 294/319 (92%), Gaps = 3/319 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MA G+A+ S GG    YNG+IT FV+LSCMMAGMGGVIFGYDIGISGGVTSM+ FL+KFF
Sbjct: 1   MAVGIAVTSHGGH---YNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFF 57

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P V+++MKEDTKISNYCKFDSQLLTSFTSSLY+AGLVASFVAS +T+ FGRKP++L GGA
Sbjct: 58  PXVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGA 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
           AFL GSALGGAA NVYM+I GR+LLGVGVGFANQ+VPLYLSEMAP RYRGAINNGFQFSI
Sbjct: 118 AFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSI 177

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
           G+GAL+AN IN+GTE+IKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR  D+ K
Sbjct: 178 GVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           A+LMLQRVRGTNDV+AE DDL+KASS AKTIN PFKKI+QRKYRPQL+MA+AIPFFQQVT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297

Query: 301 GINVIAFYAPLLFRTIGLG 319
           GINVIAFYAP+LFR IGLG
Sbjct: 298 GINVIAFYAPVLFRAIGLG 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/318 (83%), Positives = 298/318 (93%), Gaps = 3/318 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MAAG+AI SEGG    YNG +T+FV LSCMMA MGGVIFGYDIG+SGGVTSM+PFL+KFF
Sbjct: 1   MAAGLAITSEGGQ---YNGSMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFF 57

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P+V+RKMKEDT+ISNYCKFDSQLLTSFTSSLYVAGLVASF ASSVTRAFGRKPS+L+GGA
Sbjct: 58  PDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGA 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
            FLAG+ALGGAAVNVYMLIFGR+LLGVGVGFANQ+VPLYLSEMAP RYRGAINNGFQFS+
Sbjct: 118 VFLAGAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSV 177

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
           GIGAL+AN INYGTE+I+GGWGWR+SLA+AAVPA+ILT GALFLPETPNSLIQR +DH++
Sbjct: 178 GIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           AKLMLQRVRGT DV+AE DDL+KAS  ++TI HPFK I++RKYRPQL+MA+AIPFFQQVT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297

Query: 301 GINVIAFYAPLLFRTIGL 318
           GINVIAFYAP+LFRTIGL
Sbjct: 298 GINVIAFYAPILFRTIGL 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/318 (82%), Positives = 297/318 (93%), Gaps = 3/318 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MAAG+AI SEGG    YNG++T+FV LSCMMA MGGVIFGYDIG+SGGVTSM+PFL+KFF
Sbjct: 1   MAAGLAITSEGGQ---YNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFF 57

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P+V+RKMKEDT+ISNYCKFDSQLLTSFTSSLYVAGLVASF ASSVTRAFGRKPS+L+GG 
Sbjct: 58  PDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGX 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
            FLA +ALGGAAVNVYMLIFGR+LLGVGVGFANQ+VPLYLSEMAP RYRGAINNGFQFS+
Sbjct: 118 VFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSV 177

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
           GIGAL+AN INYGTE+I+GGWGWR+SLA+AAVPA+ILT GALFLPETPNSLIQR +DH++
Sbjct: 178 GIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           AKLMLQRVRGT DV+AE DDL+KAS  ++TI HPFK I++RKYRPQL+MA+AIPFFQQVT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297

Query: 301 GINVIAFYAPLLFRTIGL 318
           GINVIAFYAP+LFRTIGL
Sbjct: 298 GINVIAFYAPILFRTIGL 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/327 (78%), Positives = 290/327 (88%), Gaps = 10/327 (3%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MAAG+AIA EGG+   YNGK+T FV LSCMMA MGGVIFGYDIGISGGVTSMEPFL+KFF
Sbjct: 1   MAAGLAIAGEGGE---YNGKMTWFVALSCMMASMGGVIFGYDIGISGGVTSMEPFLKKFF 57

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           PEV+ +MKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASF ASS+TR FGRKPS+L GGA
Sbjct: 58  PEVYARMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITRYFGRKPSILAGGA 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS-------VPLYLSEMAPARYRGAIN 173
           AFL+GSAL GAA N+YMLIFGR+LLGVGVGFANQ+       VPLYLSEMAP RYRGAIN
Sbjct: 118 AFLSGSALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRRAVPLYLSEMAPPRYRGAIN 177

Query: 174 NGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQ 233
           NGFQ  I IG L+ANFIN+GTE+I+GGWGWR+SLA+ A+PA+ LT+G+LFLPETPNSLIQ
Sbjct: 178 NGFQLCIAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTIGSLFLPETPNSLIQ 237

Query: 234 RKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAI 293
           R +D QKAK MLQR+RGT DVEAEF+DL+KAS  +K+I HP KKIIQ+KYRPQL+MA+AI
Sbjct: 238 RFNDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSIEHPIKKIIQKKYRPQLVMAIAI 297

Query: 294 PFFQQVTGINVIAFYAPLLFRTIGLGR 320
           PFFQQVTGINVI+FYAP+LFRTIGL  
Sbjct: 298 PFFQQVTGINVISFYAPILFRTIGLSE 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/320 (81%), Positives = 296/320 (92%), Gaps = 2/320 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MA  ++I S+ G   + NGK+T FV+LSCMMA MGGVIFGYDIGI+GGVTSMEPFLEKFF
Sbjct: 1   MAVELSIRSDQG--GLCNGKMTWFVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLEKFF 58

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P+V+RKMKEDT+ISNYCKFDSQLLTSFTSS+YVAG +ASF ASS+T+AFGRKPS+L+GGA
Sbjct: 59  PKVYRKMKEDTEISNYCKFDSQLLTSFTSSMYVAGFIASFFASSITKAFGRKPSILLGGA 118

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
           AFLAG+ALGGAA NVYMLIFGR+LLGVGVGFANQ+VPLYLSEMAP RYRGAINNGFQFSI
Sbjct: 119 AFLAGAALGGAAFNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSI 178

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
           GIGAL+AN INYGTE+IKGGWGWR+SLALAAVPA+ILTLGA+FLPETPNSLIQ   D ++
Sbjct: 179 GIGALSANLINYGTEKIKGGWGWRISLALAAVPATILTLGAVFLPETPNSLIQLTDDTER 238

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           AKLMLQRVRGT DV+AE DDL+KASS +KT+ HPFKKII+RKYRPQL+MA+AIPFFQQVT
Sbjct: 239 AKLMLQRVRGTEDVQAELDDLIKASSISKTVEHPFKKIIKRKYRPQLVMAIAIPFFQQVT 298

Query: 301 GINVIAFYAPLLFRTIGLGR 320
           GINVIAFYAP+LFRTIGLG 
Sbjct: 299 GINVIAFYAPILFRTIGLGE 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/320 (74%), Positives = 282/320 (88%), Gaps = 3/320 (0%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MA G+AIA+EG     Y+GKIT+ VILSCM+A  GG+IFGYDIGISGGVTSM PFLEKFF
Sbjct: 1   MAVGLAIANEGRG---YSGKITSIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFF 57

Query: 61  PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA 120
           P+V+ KMK+DTK+SNYCKFDSQLLT+FTSSLY+AGL+ASF ASSVTRAFGRKPS+L+GGA
Sbjct: 58  PDVYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGA 117

Query: 121 AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
           AFL G+ALGGAA+N+YMLI GR++LGVG+GFANQS PLYLSEMAP RYRGAIN GFQ  +
Sbjct: 118 AFLIGAALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPRYRGAINTGFQLCV 177

Query: 181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
           GIG L+AN +N+GTE+IK GWGWR+SL +AAVPAS+LT G+LFLPETPNS+IQ   +HQK
Sbjct: 178 GIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPETPNSIIQHDKNHQK 237

Query: 241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
           AKLMLQR+RGT+DV+ E +DL++AS  + +I HPFK I+ RKYRPQL+MA+AIPFFQQ T
Sbjct: 238 AKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQLVMAIAIPFFQQFT 297

Query: 301 GINVIAFYAPLLFRTIGLGR 320
           GINVI+FYAP+LF TIGLG 
Sbjct: 298 GINVISFYAPILFLTIGLGE 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/322 (77%), Positives = 281/322 (87%), Gaps = 5/322 (1%)

Query: 1   MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
           MA G+AI SE G NN   GKIT +V+LSCMMA MGGVIFGYDIGI+GGVTSMEPFL+KFF
Sbjct: 1   MAVGLAITSESGQNN---GKITLYVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLKKFF 57

Query: 61  PEVHRKMK-EDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGG 119
            +V+ KMK  D K+SNYC FDSQLLTSFTSSLYVAGLV SF AS +T+AFGRKPS+++GG
Sbjct: 58  HKVYLKMKLADDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYITKAFGRKPSIVVGG 117

Query: 120 AAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFS 179
           AAFLAG+ LGGAA NVYMLI GRLLLGVGVGFANQ+VPLYLSEMA  R RGAINNGFQ S
Sbjct: 118 AAFLAGTGLGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRLRGAINNGFQLS 177

Query: 180 IGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQ 239
           IGIGAL+AN INYGTE+I+GGWGWR+SLA+AAVPAS+LTLGALFLPETPNS+IQR  D Q
Sbjct: 178 IGIGALSANLINYGTEKIEGGWGWRMSLAMAAVPASVLTLGALFLPETPNSVIQRSHDKQ 237

Query: 240 KAKLMLQRVRGTNDVEAEFDDLLKASSTAKTIN-HPFKKIIQRKYRPQLLMAMAIPFFQQ 298
           KAKLMLQR+RG  DV+AE DDL+KASS +KT N    K I++ +YRPQL+MA+AIPFFQQ
Sbjct: 238 KAKLMLQRIRGMEDVQAELDDLIKASSPSKTNNKQSLKLILKGRYRPQLVMALAIPFFQQ 297

Query: 299 VTGINVIAFYAPLLFRTIGLGR 320
           VTGINVIAFYAPLLFRTIGLG 
Sbjct: 298 VTGINVIAFYAPLLFRTIGLGE 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/304 (76%), Positives = 272/304 (89%)

Query: 17  YNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNY 76
           YNGK+T  VILSCM+A  GG+IFGYDIGISGGVTSM PFLEKFFP+V+ KMK+D KISNY
Sbjct: 15  YNGKMTPIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPDVYTKMKQDNKISNY 74

Query: 77  CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY 136
           CKFDSQLLT+FTSSLY+AGL+ASF ASS+TRAFGRKPS+L+GGAAFL G+ALGGAA+N+Y
Sbjct: 75  CKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSILVGGAAFLIGAALGGAALNIY 134

Query: 137 MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ 196
           MLI GR+LLGVG+GFANQ+VPLYLSEMA  RYRGAIN GFQ  +GIG L+AN IN+GTE+
Sbjct: 135 MLILGRVLLGVGIGFANQAVPLYLSEMALPRYRGAINIGFQLCVGIGVLSANLINFGTEK 194

Query: 197 IKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEA 256
           IK GWGWR+SLA+AAVPA+ILTLGA FLPETPNS+IQ   +HQKAKLMLQ +RGT+DV+ 
Sbjct: 195 IKDGWGWRISLAMAAVPATILTLGAFFLPETPNSIIQNSKNHQKAKLMLQSIRGTHDVQQ 254

Query: 257 EFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI 316
           EF+DL++AS  + +I HPFK I+QRKYRPQL+MA+AIPFFQQ TGINVI+FYAP+LF TI
Sbjct: 255 EFEDLIEASIMSNSIKHPFKNILQRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTI 314

Query: 317 GLGR 320
           GLG 
Sbjct: 315 GLGE 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2151596	514	AT5G61520 [Arabidopsis thalian	0.839	0.589	0.619	8.4e-97
TAIR|locus:2202044	522	STP1 "AT1G11260" [Arabidopsis	0.869	0.601	0.555	4.5e-91
TAIR|locus:2166781	514	STP11 "sugar transporter 11" [	0.875	0.614	0.544	2.2e-89
TAIR|locus:2011957	517	STP9 "sugar transporter 9" [Ar	0.872	0.609	0.547	1.6e-88
TAIR|locus:2092221	514	AT3G19940 [Arabidopsis thalian	0.878	0.616	0.536	2.5e-88
TAIR|locus:2092286	514	STP4 "sugar transporter 4" [Ar	0.900	0.632	0.539	2.3e-87
TAIR|locus:2151074	526	MSS1 "AT5G26340" [Arabidopsis	0.861	0.591	0.528	1.9e-83
TAIR|locus:2132213	513	STP7 "sugar transporter protei	0.853	0.600	0.504	1.5e-81
TAIR|locus:2195995	504	STP14 "sugar transport protein	0.872	0.625	0.490	2.5e-81
TAIR|locus:2009323	506	AT1G34580 [Arabidopsis thalian	0.869	0.620	0.5	1.3e-75

TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 192/310 (61%), Positives = 238/310 (76%)

Query:    15 NIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKI- 73
             ++  GKIT FV+ SC+MA MGGVIFGYDIG+SGGV SM PFL++FFP+V++  +ED +  
Sbjct:    14 SVSGGKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRR 73

Query:    74 --SN--YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXXXXXXXXXXX 129
               SN  YC F+SQLLTSFTSSLYV+GL+A+ +ASSVTR++GRKPS+ +            
Sbjct:    74 GNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALG 133

Query:   130 XXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANF 189
                 NV MLI  R        FANQSVPLYLSEMAPA+YRGAI+NGFQ  IGIG L+AN 
Sbjct:   134 GSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANV 193

Query:   190 INYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVR 249
             INY T+ IK GW  R+SLA AA+PASILTLG+LFLPETPNS+IQ   D  K +LML+RVR
Sbjct:   194 INYETQNIKHGW--RISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVR 251

Query:   250 GTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA 309
             GTNDV+ E  DL++ASS + T ++ F K++QRKYRP+L+MA+ IPFFQQVTGINV+AFYA
Sbjct:   252 GTNDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYA 311

Query:   310 PLLFRTIGLG 319
             P+L+RT+G G
Sbjct:   312 PVLYRTVGFG 321

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 176/317 (55%), Positives = 228/317 (71%)

Query:     1 MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
             M AG  +  +G     Y GK+T FV+ +C++A MGG+IFGYDIGISGGVTSM  FL++FF
Sbjct:     1 MPAGGFVVGDG--QKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFF 58

Query:    61 PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXX 120
             P V+RK +ED   + YC++DS  LT FTSSLY+A L++S VAS+VTR FGR+ S+L    
Sbjct:    59 PSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGI 118

Query:   121 XXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
                          +V+MLI GR        FANQ+VPLYLSEMAP +YRGA+N GFQ SI
Sbjct:   119 LFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSI 178

Query:   181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
              IG L A  +NY   +IKGGWGWR+SL  A VPA I+T+G+L LP+TPNS+I+R   H++
Sbjct:   179 TIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIER-GQHEE 237

Query:   241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
             AK  L+R+RG +DV  EFDDL+ AS  +++I HP++ +++RKYRP L MA+ IPFFQQ+T
Sbjct:   238 AKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLT 297

Query:   301 GINVIAFYAPLLFRTIG 317
             GINVI FYAP+LF TIG
Sbjct:   298 GINVIMFYAPVLFNTIG 314

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 173/318 (54%), Positives = 228/318 (71%)

Query:     3 AGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPE 62
             AG A   E G    Y G++TAFV+++C++A MGG++FGYDIGISGGV SME FL KFFP+
Sbjct:     2 AGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPD 61

Query:    63 VHRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXXX 121
             V R+M+    + + YCK+D++LLT FTSSLY+A L ASF+AS++TR FGRK S+++    
Sbjct:    62 VLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLA 121

Query:   122 XXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSIG 181
                        +N+ MLI GR        FANQSVPLYLSEMAPA+ RGA+N GFQ +I 
Sbjct:   122 FLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAIT 181

Query:   182 IGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKA 241
             IG LAAN +NY T +++ G GWR+SL LA VPA ++ +G  FLP+TPNS+++R  + +KA
Sbjct:   182 IGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILER-GNKEKA 240

Query:   242 KLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG 301
             K MLQ++RGT +VE EF++L  A   AK + HP+  I+Q +YRPQL     IPFFQQ+TG
Sbjct:   241 KEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTG 300

Query:   302 INVIAFYAPLLFRTIGLG 319
             INVI FYAP+LF+TIG G
Sbjct:   301 INVIMFYAPVLFKTIGFG 318

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 174/318 (54%), Positives = 226/318 (71%)

Query:     1 MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
             MA G  ++  GG  N Y G +T FVI++C++A MGG++FGYD+GISGGVTSME FL KFF
Sbjct:     1 MAGGAFVSEGGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFF 60

Query:    61 PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXX 120
             PEV ++M E  + + YCKFD+QLL  FTSSLY+A L +SFVAS+VTR +GRK S+ +   
Sbjct:    61 PEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGV 120

Query:   121 XXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
                          NV MLI GR        FANQS P+YLSEMAPA+ RGA+N GFQ +I
Sbjct:   121 AFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAI 180

Query:   181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
              IG L AN INYGT Q+    GWRVSL LAAVPA I+ +G+  LP+TPNS+++R   +++
Sbjct:   181 TIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLER-GKYEQ 238

Query:   241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQR-KYRPQLLMAMAIPFFQQV 299
             A+ MLQ++RG ++V+ EF DL  A   AK +++P+K I Q+ KYRP L+   AIPFFQQ+
Sbjct:   239 AREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQI 298

Query:   300 TGINVIAFYAPLLFRTIG 317
             TGINVI FYAP+LF+T+G
Sbjct:   299 TGINVIMFYAPVLFKTLG 316

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 171/319 (53%), Positives = 226/319 (70%)

Query:     1 MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
             MA G  ++  GG    Y G +TAFVI++C++A MGG++FGYD+GISGGVTSME FL KFF
Sbjct:     1 MAGGAFVSEGGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFF 60

Query:    61 PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXX 120
             P+V  +MK+    + YCKFD+Q+L  FTSSLY+A LVASF+AS +TR  GRK S+ +   
Sbjct:    61 PQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGL 120

Query:   121 XXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
                         VNV MLI GR        FANQS P+YLSEMAPA+ RGA+N GFQ +I
Sbjct:   121 AFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAI 180

Query:   181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
              IG L AN INYGT ++    GWRVSL LAAVPA ++ +G+  LP+TPNS+++R   +++
Sbjct:   181 TIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLER-GKNEE 238

Query:   241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
             AK ML+++RG ++V+ EF DL+ A   AK + +P+K I++ KYRP L+   AIPFFQQ+T
Sbjct:   239 AKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQIT 298

Query:   301 GINVIAFYAPLLFRTIGLG 319
             GINVI FYAP+LF+T+G G
Sbjct:   299 GINVIMFYAPVLFKTLGFG 317

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 178/330 (53%), Positives = 225/330 (68%)

Query:     1 MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
             MA G    + G  N  YN K+T  V ++C +   GG+IFGYD+GISGGVTSMEPFLE+FF
Sbjct:     1 MAGGFVSQTPGVRN--YNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFF 58

Query:    61 PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXX 120
             P V++KMK   + + YC+FDSQLLT FTSSLYVA LV+S  AS++TR FGRK S+ +   
Sbjct:    59 PYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGF 117

Query:   121 XXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
                          N+ ML+ GR        FANQSVP+YLSEMAP   RGA NNGFQ +I
Sbjct:   118 TFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAI 177

Query:   181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
               G + A  INY T Q+KG  GWR+SL LA VPA ++ +GAL LP+TPNSLI+R    ++
Sbjct:   178 IFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT-EE 236

Query:   241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT 300
             AK MLQ +RGTN+V+ EF DL+ AS  +K + HP+K I+  +YRPQL+M   IPFFQQ+T
Sbjct:   237 AKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLT 296

Query:   301 GINVIAFYAPLLFRTIGLGRLKVCQLSKWI 330
             GINVI FYAP+LF+T+G G  K   LS  +
Sbjct:   297 GINVITFYAPVLFQTLGFGS-KASLLSAMV 325

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015770 "sucrose transport" evidence=TAS

TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 168/318 (52%), Positives = 223/318 (70%)

Query:     4 GMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEV 63
             G A ++ G +   +  KIT  VI+SC+MA  GG++FGYD+G+SGGVTSM  FLEKFFP V
Sbjct:     5 GFATSANGVE---FEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVV 61

Query:    64 HRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXXXX 122
             +RK+     K SNYCK+D+Q L  FTSSLY+AGL A+F AS  TR  GR+ ++L+     
Sbjct:    62 YRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFF 121

Query:   123 XXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSIGI 182
                        ++ MLI GR        FANQ+VPL+LSE+AP R RG +N  FQ ++ I
Sbjct:   122 IIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTI 181

Query:   183 GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR-KSDHQKA 241
             G L AN +NYGT +IKGGWGWR+SL LA +PA +LT+GAL + ETPNSL++R + D  KA
Sbjct:   182 GILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKA 241

Query:   242 KLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG 301
               +L+R+RGT++VE EF DLL+AS  AK + HPF+ ++QR+ RPQL++A+A+  FQQ TG
Sbjct:   242 --VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTG 299

Query:   302 INVIAFYAPLLFRTIGLG 319
             IN I FYAP+LF T+G G
Sbjct:   300 INAIMFYAPVLFSTLGFG 317

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005358 "high-affinity hydrogen:glucose symporter activity" evidence=IDA

GO:0009679 "hexose:hydrogen symporter activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 158/313 (50%), Positives = 220/313 (70%)

Query:     7 IASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRK 66
             +A E  +   Y GK+T++VI++C++A +GG IFGYDIGISGGVTSM+ FLE+FF  V+ K
Sbjct:    11 VAKERAEQ--YQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEK 68

Query:    67 MKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXXXXXXXX 126
              K+  + SNYCK+D+Q L +FTSSLY+AGLV++ VAS +TR +GR+ S++          
Sbjct:    69 KKQAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGS 127

Query:   127 XXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALA 186
                   VN+ ML+ GR        F NQ+VPLYLSE+AP   RG +N  FQ +  IG   
Sbjct:   128 GLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFT 187

Query:   187 ANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQ 246
             AN +NYGT+Q+K  WGWR+SL LAA PA ++TLG  FLPETPNSL++R    ++ + +L 
Sbjct:   188 ANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLV 245

Query:   247 RVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA 306
             ++RGT +V AE  D++ AS  A +I HPF+ I+Q+++RPQL+MA+ +P FQ +TGIN I 
Sbjct:   246 KLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSIL 305

Query:   307 FYAPLLFRTIGLG 319
             FYAP+LF+T+G G
Sbjct:   306 FYAPVLFQTMGFG 318

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 157/320 (49%), Positives = 225/320 (70%)

Query:     3 AGMAIASEGGDN--NIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
             AG A+  EGG    ++Y  +IT++ I +C++  MGG +FGYD+G+SGGVTSM+ FL++FF
Sbjct:     2 AGGALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFF 61

Query:    61 PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXX 120
             P ++++ +     ++YCK+D+Q+LT FTSSLY AGL+++F AS VTR +GR+ S+L+   
Sbjct:    62 PGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSV 121

Query:   121 XXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
                          N+ MLI GR        F NQ+VPLYLSEMAPA+ RG +N  FQ + 
Sbjct:   122 SFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTT 181

Query:   181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
              IG L AN INY TEQI   WGWR+SL LA VPA ++ LG L LPETPNSL+++    +K
Sbjct:   182 CIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQ-GKLEK 239

Query:   241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLM-AMAIPFFQQV 299
             AK +L +VRGTN++EAEF DL++AS  A+ + +PF+ ++ R+ RPQL++ A+ +P FQQ+
Sbjct:   240 AKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQL 299

Query:   300 TGINVIAFYAPLLFRTIGLG 319
             TG+N I FYAP++F+++G G
Sbjct:   300 TGMNSILFYAPVMFQSLGFG 319

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IGI

TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 162/324 (50%), Positives = 214/324 (66%)

Query:     1 MAAGMAIASEGGDNNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFF 60
             MA G          NI + KITA V++SC++A   G+IFGYDIGISGGVT+M+PFLEKFF
Sbjct:     1 MAGGGLALDVSSAGNI-DAKITAAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFF 59

Query:    61 PEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXX 120
             P V +K  E  K + YC +DSQLLT+FTSSLYVAGLVAS VAS +T A+GR+ ++++   
Sbjct:    60 PSVLKKASE-AKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGF 118

Query:   121 XXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNGFQFSI 180
                          N+ MLI GR        F NQ+ P+YLSE+AP R+RGA N GF   I
Sbjct:   119 TFLFGALINGLAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGFSCFI 178

Query:   181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK 240
              +G +AAN INYGT+  + GW  R+SL LAAVPA+I+T+G LF+ +TP+SL+ R   H +
Sbjct:   179 SMGVVAANLINYGTDSHRNGW--RISLGLAAVPAAIMTVGCLFISDTPSSLLAR-GKHDE 235

Query:   241 AKLMLQRVRGTN---DVEAEFDDLLKASSTAKTINHPF--KKIIQRKYRPQLLMAMAIPF 295
             A   L ++RG     DVE E  +L+++S  A         K I+QR+YRP L++A+ IP 
Sbjct:   236 AHTSLLKLRGVENIADVETELAELVRSSQLAIEARAELFMKTILQRRYRPHLVVAVVIPC 295

Query:   296 FQQVTGINVIAFYAPLLFRTIGLG 319
             FQQ+TGI V AFYAP+LFR++G G
Sbjct:   296 FQQLTGITVNAFYAPVLFRSVGFG 319

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7R8	STP3_ARATH	No assigned EC number	0.6645	0.8559	0.6011	yes	no
Q07423	HEX6_RICCO	No assigned EC number	0.8270	0.8725	0.6176	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-62
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	9e-48
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	9e-28
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-15
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-09
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	9e-09
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-08
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-07
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	4e-05
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	1e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-04
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-04

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  205 bits (523), Expect = 3e-62
 Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 16/296 (5%)

Query: 29  CMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFT 88
            ++A +GG +FGYD G+ G   ++  F ++F           + +         L     
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTV---------LSGLIV 52

Query: 89  SSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLG 146
           S   V  L+ S  A  +   FGRK S+L+G   F+ G+ L G A   + YMLI GR+++G
Sbjct: 53  SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Query: 147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVS 206
           +GVG  +  VP+Y+SE+AP + RGA+ + +Q  I  G L A  I  G  +     GWR+ 
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172

Query: 207 LALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFD---DLLK 263
           L L  VPA +L +G LFLPE+P  L+  K   ++A+ +L ++RG +DV+ E     D L+
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVL-KGKLEEARAVLAKLRGVSDVDQEIQEEKDSLE 231

Query: 264 ASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLG 319
            S  A+  +        +  R +LLM + +  FQQ+TGIN I +Y+P +F T+GL 
Sbjct: 232 RSVEAEKASWLELF-RGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS 286

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  167 bits (426), Expect = 9e-48
 Identities = 104/313 (33%), Positives = 156/313 (49%), Gaps = 25/313 (7%)

Query: 17  YNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNY 76
             G     V L  ++A +GG++FGYD G+ GG  ++  F E  F   +            
Sbjct: 18  GLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAF-EFKFTSANSD---------- 66

Query: 77  CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY 136
             + S L     S   V G + +  A  ++  FGRK S+L+    F+ G+ L G A    
Sbjct: 67  -SYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125

Query: 137 ---MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYG 193
              MLI GR+LLG+GVG A+  VP+YLSE+AP   RGA+ + +Q +I  G L A     G
Sbjct: 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG 185

Query: 194 TEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTND 253
              +    GWR+ L L  +PA +L LG  FLPE+P  L+  K   ++A+  L R+RGT+ 
Sbjct: 186 KVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV-GKGRVEEARKSLARLRGTSG 244

Query: 254 VEAEFDDLLKASSTAKTIN--------HPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVI 305
            + E  D L+     ++I                +R  R +L + + + +FQQ TGIN I
Sbjct: 245 EDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAI 303

Query: 306 AFYAPLLFRTIGL 318
            +Y+P +F   G+
Sbjct: 304 MYYSPTIFENAGV 316

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  113 bits (284), Expect = 9e-28
 Identities = 83/321 (25%), Positives = 138/321 (42%), Gaps = 62/321 (19%)

Query: 30  MMAGMGGVIFGYDIG-ISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDS-QLLTSF 87
           ++A +GG++FGYD   ISG V S    L   F                    +   L  F
Sbjct: 15  LVATLGGLLFGYDTAVISGTVES----LNTVFVA-----------PQNLSESAANSLLGF 59

Query: 88  TSS-----LYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----------- 131
             +       + G +  + ++     FGR+ S+ +    F   SALG A           
Sbjct: 60  CVASALIGCIIGGALGGYCSNR----FGRRDSLKIAAVLFFI-SALGSAWPEFGFTSIGP 114

Query: 132 --AVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANF 189
                V   +  R++ G+GVG A+   P+Y++E+APA  RG + +  QF+I  G L   F
Sbjct: 115 DNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF 174

Query: 190 INYGTEQIKGG----W----GWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKA 241
           +NY    I       W    GWR   A  A+PA +  +   F+PETP  L+ R    ++A
Sbjct: 175 VNYF---IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ-EQA 230

Query: 242 KLMLQRVRGTNDVEAEFDDLLKASSTAKTINHP---FKKIIQRKYRPQLLMAMAIPFFQQ 298
           + +L+++ G         ++  +    +        F   +       +++ + +  FQQ
Sbjct: 231 EGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGV-------IVIGVMLSVFQQ 283

Query: 299 VTGINVIAFYAPLLFRTIGLG 319
             GINV+ +YAP +F+T+G  
Sbjct: 284 FVGINVVLYYAPEIFKTLGAS 304

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 3/153 (1%)

Query: 73  ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA 132
           ++      +       S+  +   + S +A  ++  FGR+  +L+G   F  GS L   A
Sbjct: 25  LAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84

Query: 133 VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINY 192
            ++++L+ GR LLG+G G    +    ++E  P + RG     F    G+GAL    +  
Sbjct: 85  SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144

Query: 193 GTEQIKGGWGWRVSLALAAVPASILTLGALFLP 225
               +    GWR    + A+   +L L  LFL 
Sbjct: 145 L---LAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 4/142 (2%)

Query: 88  TSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGV 147
            ++  +   +A  +A  ++  FGR+  +L+G   F  G  L   A ++++L+  R+L G+
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 148 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSL 207
           G G    +    +++  P   RG          G+GA     +      +   +GWR + 
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL---LASLFGWRAAF 154

Query: 208 ALAAVPASILT-LGALFLPETP 228
            + A+ A +   L AL LP  P
Sbjct: 155 LILAILALLAAVLAALLLPRPP 176

Length = 346

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 80  DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLI 139
           D+  +    S  +V  L+ SFV   ++  FGRK  +L+          L   + N  + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184

Query: 140 FGRLLLGVGV-GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK 198
             RLL+G+G+ G   Q+V L   E  P + R  +    Q    +G +    + Y      
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-- 241

Query: 199 GGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTN 252
               WR      ++P  +  L + F+PE+P  LI +    ++A  +LQR+   N
Sbjct: 242 ----WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKIN 290

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 18/215 (8%)

Query: 109 FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY 168
            GR+  +L     F   + L   A NV  L+  R L G+G+G    ++   +SE AP R+
Sbjct: 79  IGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF 138

Query: 169 RGAINNGFQFSIGIGALAANFINYGTEQIKGGW-----GWRVSLALAAV-PASILTLGAL 222
           RG           IGA    F+         GW     GWR    +  + P  +L L   
Sbjct: 139 RGTAVGLMFCGYPIGAAVGGFL--------AGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190

Query: 223 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRK 282
           FLPE+ + L+ ++ +    + ++  +      EA+   L +  +T  T    FK + Q K
Sbjct: 191 FLPESIDFLVSKRPE--TVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGK 247

Query: 283 YRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIG 317
                ++   + F   V G+  +  + P L   +G
Sbjct: 248 TARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELG 281

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 90  SLYVAG-----LVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLL 144
            L +AG     L+ S ++  +T  FGRKP +L+G   F+  +A+   + N+ +LI  R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWR 204
            G G  FA  +    ++++ P   RG         I +G L    +      +    GWR
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL---GGVLAQFLGWR 117

Query: 205 VSLALAAVPASI-LTLGALFLPET 227
                 A+ A     L A  LPET
Sbjct: 118 APFLFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 79  FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLA-GSALGGAAVNVYM 137
             +       S   + G++ + +   ++   GR+  +L+ G    A G  L   A ++ +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267

Query: 138 LIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI 197
           L+   LLLG G+GFA  ++    SE+AP   RG  +  F     +G      +      +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLL 324

Query: 198 KGGWGWRVSLALAAVPASILTLGALFLP 225
               G+     + A  A +  L  L LP
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 14/147 (9%)

Query: 109 FGRKPS-----VLMGGAAFLAGSALGGAAVNVY---MLIFGRLLLGVGVGFANQSVPLYL 160
            GRK +     ++MG    L G     A + ++   +L+  RL+ G  +G       LYL
Sbjct: 62  IGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYL 121

Query: 161 SEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG-----WGWRVSLALAAVPAS 215
           +E AP   RG   +  Q    +G L A         + G      WGWR+   ++AV   
Sbjct: 122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVL 181

Query: 216 ILTLGALFLPETPNSLIQRKSDHQKAK 242
           I       L ETP    + +  H+K +
Sbjct: 182 IGLYLRRNLEETP-VFEKAQEKHKKKR 207

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 80  DSQLLTSFTSSLYVAGLVAS-FVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYML 138
           ++QL  +F  S+Y+AG+ A+   A  +    GRKP  + G A F+  S L   A    + 
Sbjct: 37  EAQLHIAF--SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF 94

Query: 139 IFGRLLLGVGVGF 151
           + GR L G+G G 
Sbjct: 95  LAGRFLQGIGAGC 107

Length = 392

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 23/180 (12%)

Query: 89  SSLYVAGLVASFVASSVTRAFGRKPSVLM-----GGAAFLAGSALGGAAVNVYMLIFGRL 143
             +Y+  +V +F    +    GRK  +L+     G  AF +    G         +F RL
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG-----FFLFCRL 263

Query: 144 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI------NYG-TEQ 196
           L G G+G A   V  Y +E      RG   +       IG + A  +      +YG + Q
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323

Query: 197 IKGGW---GWRVSLALAAVPASILTLGAL-FLPETPNSLIQRKSDHQKAKLMLQRVRGTN 252
           +   +    WRV + + A P  +  +GAL F+PE+P   ++    H +A ++L+ +  TN
Sbjct: 324 MGSAYQFHSWRVFVIVCAFP-CVFAIGALTFMPESPRFFLE-NGKHDEAWMILKLIHDTN 381

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 93  VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA 152
           +   + + + + +T    R+  +L   A F+  + L   A +  +L+  R L G+  G  
Sbjct: 59  LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118

Query: 153 NQSVPLYLSEMAPARYRGA----INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLA 208
                   + + P   RG     +  G   +  +G     F+  G       +GWR +  
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL--GQL-----FGWRATFL 171

Query: 209 LAAVPASILTLGALFL 224
             AV A +  L    L
Sbjct: 172 AIAVLALLALLLLWKL 187

Length = 394

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 109 FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY 168
           FGRKP ++    A+  G+ L G A  V ML   R ++G+G+         Y  E  P   
Sbjct: 80  FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139

Query: 169 RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVP 213
           +   +       GIG + A +           +GWR +  +  +P
Sbjct: 140 KSKASAFLVSGFGIGNIIAAYF---MPSFAEAYGWRAAFFVGLLP 181

Length = 426

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.98
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.98
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
TIGR00898	505	2A0119 cation transport protein.	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.96
PRK03545	390	putative arabinose transporter; Provisional	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
TIGR00895	398	2A0115 benzoate transport.	99.95
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.95
PRK09705	393	cynX putative cyanate transporter; Provisional	99.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.95
PLN00028	476	nitrate transmembrane transporter; Provisional	99.95
KOG2533	495	consensus Permease of the major facilitator superf	99.95
TIGR00893	399	2A0114 d-galactonate transporter.	99.94
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.94
PRK03699	394	putative transporter; Provisional	99.94
PRK10091	382	MFS transport protein AraJ; Provisional	99.94
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.94
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.94
KOG2532	466	consensus Permease of the major facilitator superf	99.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.94
PRK10133	438	L-fucose transporter; Provisional	99.94
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.94
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.93
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.93
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.93
TIGR00805	633	oat sodium-independent organic anion transporter.	99.93
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.93
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.93
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.93
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.93
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK03633	381	putative MFS family transporter protein; Provision	99.92
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.92
PRK11043	401	putative transporter; Provisional	99.92
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.92
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.92
PRK10504	471	putative transporter; Provisional	99.91
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.91
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.91
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.91
PRK12382	392	putative transporter; Provisional	99.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.91
PRK05122	399	major facilitator superfamily transporter; Provisi	99.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.9
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.9
PRK09874	408	drug efflux system protein MdtG; Provisional	99.9
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.89
TIGR00901	356	2A0125 AmpG-related permease.	99.89
PRK10054	395	putative transporter; Provisional	99.88
PRK11010	491	ampG muropeptide transporter; Validated	99.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.88
PRK10489	417	enterobactin exporter EntS; Provisional	99.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.86
PRK15011	393	sugar efflux transporter B; Provisional	99.85
KOG2615	451	consensus Permease of the major facilitator superf	99.85
PRK11902	402	ampG muropeptide transporter; Reviewed	99.85
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.84
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.83
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.82
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.82
PTZ00207	591	hypothetical protein; Provisional	99.81
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.81
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.81
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.81
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.8
PRK09528	420	lacY galactoside permease; Reviewed	99.79
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.78
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.76
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.76
PRK10642	490	proline/glycine betaine transporter; Provisional	99.74
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.71
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.7
KOG2563	480	consensus Permease of the major facilitator superf	99.68
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.68
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.67
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.63
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.62
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.61
PRK09669	444	putative symporter YagG; Provisional	99.61
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.61
PF13347	428	MFS_2: MFS/sugar transport protein	99.61
PRK10429	473	melibiose:sodium symporter; Provisional	99.6
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.57
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.57
KOG3626	735	consensus Organic anion transporter [Secondary met	99.56
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.52
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.5
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.49
PRK11462	460	putative transporter; Provisional	99.48
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.47
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.46
PRK09528	420	lacY galactoside permease; Reviewed	99.45
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.42
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.42
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.41
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.41
PRK09848	448	glucuronide transporter; Provisional	99.41
PRK05122	399	major facilitator superfamily transporter; Provisi	99.4
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.37
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.36
PRK12382	392	putative transporter; Provisional	99.35
COG2211	467	MelB Na+/melibiose symporter and related transport	99.35
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.33
PRK09952	438	shikimate transporter; Provisional	99.32
PRK03699	394	putative transporter; Provisional	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.29
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.28
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.28
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.28
PRK09705	393	cynX putative cyanate transporter; Provisional	99.28
PRK09874	408	drug efflux system protein MdtG; Provisional	99.28
PRK10489	417	enterobactin exporter EntS; Provisional	99.28
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.28
PRK03893	496	putative sialic acid transporter; Provisional	99.27
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
PRK03545	390	putative arabinose transporter; Provisional	99.26
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.24
TIGR00893	399	2A0114 d-galactonate transporter.	99.23
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.21
TIGR00891	405	2A0112 putative sialic acid transporter.	99.21
TIGR00898	505	2A0119 cation transport protein.	99.21
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.2
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.2
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.19
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.18
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.18
PLN00028	476	nitrate transmembrane transporter; Provisional	99.16
KOG0569	485	consensus Permease of the major facilitator superf	99.15
TIGR00895	398	2A0115 benzoate transport.	99.15
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.12
PRK10504	471	putative transporter; Provisional	99.11
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.11
TIGR00900	365	2A0121 H+ Antiporter protein.	99.1
PRK11010	491	ampG muropeptide transporter; Validated	99.1
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.1
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.09
PRK12307	426	putative sialic acid transporter; Provisional	99.09
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.09
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.08
PRK15075	434	citrate-proton symporter; Provisional	99.07
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.07
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.04
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.02
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.02
PRK11663	434	regulatory protein UhpC; Provisional	99.0
PRK09848	448	glucuronide transporter; Provisional	98.99
PRK10054	395	putative transporter; Provisional	98.99
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.98
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.94
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.93
TIGR00901	356	2A0125 AmpG-related permease.	98.92
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.92
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.9
COG0477	338	ProP Permeases of the major facilitator superfamil	98.9
PRK10091	382	MFS transport protein AraJ; Provisional	98.89
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.89
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.87
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.86
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.86
PRK11902	402	ampG muropeptide transporter; Reviewed	98.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.85
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.84
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.81
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.79
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.78
PRK10429	473	melibiose:sodium symporter; Provisional	98.78
PRK10133	438	L-fucose transporter; Provisional	98.76
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.74
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.71
PRK09669	444	putative symporter YagG; Provisional	98.69
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.67
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.67
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.63
PF13347	428	MFS_2: MFS/sugar transport protein	98.59
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.56
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.56
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.55
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.55
PRK11043	401	putative transporter; Provisional	98.54
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.54
COG2211	467	MelB Na+/melibiose symporter and related transport	98.45
KOG3762	618	consensus Predicted transporter [General function	98.41
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.41
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.4
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.39
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.38
KOG0254	513	consensus Predicted transporter (major facilitator	98.38
KOG0637	498	consensus Sucrose transporter and related proteins	98.37
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.36
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.35
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.34
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.33
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.3
KOG2532	466	consensus Permease of the major facilitator superf	98.3
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.3
PRK11462	460	putative transporter; Provisional	98.28
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.24
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.12
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.09
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.93
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.88
KOG2533	495	consensus Permease of the major facilitator superf	97.78
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.75
PF12832	77	MFS_1_like: MFS_1 like family	97.74
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.69
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.66
KOG2615	451	consensus Permease of the major facilitator superf	97.65
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.63
PF12832	77	MFS_1_like: MFS_1 like family	97.6
PTZ00207	591	hypothetical protein; Provisional	97.58
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.5
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.42
KOG3810	433	consensus Micronutrient transporters (folate trans	97.37
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.29
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.27
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.2
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.03
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.01
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.98
COG3202	509	ATP/ADP translocase [Energy production and convers	96.9
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.86
PRK03612	521	spermidine synthase; Provisional	96.85
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.68
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.37
KOG3762	618	consensus Predicted transporter [General function	95.72
KOG2563	480	consensus Permease of the major facilitator superf	95.62
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.29
TIGR00805	633	oat sodium-independent organic anion transporter.	94.13
KOG1330	493	consensus Sugar transporter/spinster transmembrane	93.32
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.2
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.11
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	92.16
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.09
KOG3880	409	consensus Predicted small molecule transporter inv	90.33
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	89.6
KOG0637	498	consensus Sucrose transporter and related proteins	89.35
KOG2325	488	consensus Predicted transporter/transmembrane prot	89.33
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	88.07
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	87.85
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.22
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	86.52
KOG3097	390	consensus Predicted membrane protein [Function unk	86.49
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	86.02
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	81.55

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.4e-36  Score=268.29  Aligned_cols=329  Identities=27%  Similarity=0.478  Sum_probs=274.4

Q ss_pred             CCcchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCc----hhHHHHHHHHHH
Q 018042           18 NGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDS----QLLTSFTSSLYV   93 (361)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~   93 (361)
                      +++++++....+..++++.+-.||..++.|..   ...+++++++...+....+       .+.    ...+.+.+++.+
T Consensus         2 ~~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~-------~s~~~~~~lwS~~vs~f~i   71 (485)
T KOG0569|consen    2 KPKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLP-------LSDSTLDLLWSLIVSIFFI   71 (485)
T ss_pred             CCCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCC-------CChHHHHHHHHHHHHHHHH
Confidence            45667788888888888899999999987665   5677777755543332111       222    235677899999


Q ss_pred             HHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCccccc
Q 018042           94 AGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA---AVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRG  170 (361)
Q Consensus        94 ~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~  170 (361)
                      |.++|+++.+.++||+|||..+.++.++..++.++..+   .+++.+++++|++.|+..|......+.|+.|..|++.||
T Consensus        72 G~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG  151 (485)
T KOG0569|consen   72 GGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRG  151 (485)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhcc
Confidence            99999999999999999999999999988888877766   478899999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhhcccC-CCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhh
Q 018042          171 AINNGFQFSIGIGALAANFINYGTEQIK-GGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVR  249 (361)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~  249 (361)
                      ....+.+.+..+|..++..++.  .... +...|++.+.+..+++++..+...++||||+|+..++.+.+||++.++.++
T Consensus       152 ~~g~~~~~~~~~g~ll~~~~~l--~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~  229 (485)
T KOG0569|consen  152 ALGTLLQIGVVIGILLGQVLGL--PSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYR  229 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc--HHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHh
Confidence            9999999999999999977753  3333 334799999999999999999999999999999985555999999999999


Q ss_pred             CCcchHHHHHHHHHHHhhh---hhcccchhhhccc-CchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHH
Q 018042          250 GTNDVEAEFDDLLKASSTA---KTINHPFKKIIQR-KYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQ  325 (361)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  325 (361)
                      ++++.+++.++..++.+++   ++++.++++++++ ..|++..+.+.+...+++++.+.+.+|...++++.|++..++.+
T Consensus       230 G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~  309 (485)
T KOG0569|consen  230 GKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQY  309 (485)
T ss_pred             CCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHH
Confidence            9987666555544333222   2256678899865 56777888889999999999999999999999999999999999


Q ss_pred             HhhhhhhcccccccchhhHHHHhhhccceeecccC
Q 018042          326 LSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  360 (361)
Q Consensus       326 ~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~~  360 (361)
                      .+...++..++..+++.+  +.||.|||++++.++
T Consensus       310 an~~~g~v~~~~t~~~~~--lid~~gRRpLll~~~  342 (485)
T KOG0569|consen  310 ANLGIGIVNLLSTLVSPF--LIDRLGRRPLLLISL  342 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHhcCCcHHHHHHH
Confidence            999999999999999999  699999999987653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.1e-34  Score=266.84  Aligned_cols=324  Identities=19%  Similarity=0.223  Sum_probs=230.3

Q ss_pred             CCcchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHH
Q 018042           18 NGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLV   97 (361)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   97 (361)
                      +.+..+.++..+.+++++.+.+|||.+..+.+...  ...++.             ..+.+.+..+.+++.+.+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~ig~~i   71 (502)
T TIGR00887         7 TAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKM--LGYVYY-------------HGKGPLPSSVSAAVNGSASIGTLA   71 (502)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc-------------cCcccchHHHHHHHHHHHHHHHHH
Confidence            35566778888888999999999999988776321  111110             112345667789999999999999


Q ss_pred             HHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccc
Q 018042           98 ASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN------VYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA  171 (361)
Q Consensus        98 ~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~  171 (361)
                      ++++.|+++||+|||+++.+++++..++.++++++++      ++.++++|++.|++.|...+..+.+++|++|+++|++
T Consensus        72 g~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~  151 (502)
T TIGR00887        72 GQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGA  151 (502)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHH
Confidence            9999999999999999999999999999998888765      7889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhccc--------------------CCCcchHHHHHhhHHHHHHHHHhcccccCChhHH
Q 018042          172 INNGFQFSIGIGALAANFINYGTEQI--------------------KGGWGWRVSLALAAVPASILTLGALFLPETPNSL  231 (361)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~--------------------~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~  231 (361)
                      ++++.+....+|.++++.++..+...                    ..+++||+.+.+.+++.++..+..+++||||+|+
T Consensus       152 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l  231 (502)
T TIGR00887       152 MMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT  231 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999888887654321                    0124799999998888887777778899999999


Q ss_pred             HhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchh---HHHHHHHHHHHHHhcchhhhHHc
Q 018042          232 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRP---QLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      ..++++++++++...+..+.+..+ +.++.++..++++..+.+++++++++.++   +..+.....++.+...++....|
T Consensus       232 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  310 (502)
T TIGR00887       232 ADVAKDVEQAASDMSAVLQVKIEA-EPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLN  310 (502)
T ss_pred             HHhCcchHHHHHHHHHHhcccccc-CcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            988875555665555554322111 01111111011111123567776532211   22232233333333344567778


Q ss_pred             HHHHHHhcCCCChhhHH------------HhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          309 APLLFRTIGLGRLKVCQ------------LSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       309 ~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .|.++++.|++...++.            ...+..++.+++.++.++  ++||+|||++++.+
T Consensus       311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~--l~dr~gRR~~l~~~  371 (502)
T TIGR00887       311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVF--LVDIIGRKPIQLMG  371 (502)
T ss_pred             cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhcchhHHHHH
Confidence            89999888887553221            223344566678888888  69999999987654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2e-32  Score=254.14  Aligned_cols=320  Identities=23%  Similarity=0.384  Sum_probs=237.0

Q ss_pred             chHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHH
Q 018042           21 ITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASF  100 (361)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (361)
                      ..+.....+.+++++.+.++||.+.+++.  .+.+.+.+          .+....+++.+..+.+++.+++.++..++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~   73 (479)
T PRK10077          6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVF----------VAPQNLSESAANSLLGFCVASALIGCIIGGA   73 (479)
T ss_pred             cchHHHHHHHHHHHHHHhcCcccceehHh--HHHHHHHh----------cccccccccCChhHHHHHHHHHHHHHHHHHH
Confidence            34456667777778899999999998776  24444444          2334566789999999999999999999999


Q ss_pred             hhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCccc
Q 018042          101 VASSVTRAFGRKPSVLMGGAAFLAGSALGGAA------------VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY  168 (361)
Q Consensus       101 ~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~  168 (361)
                      +.|+++||+|||++++.+.++..++.+.++++            +++..++++|++.|++.|...+...++++|++|+++
T Consensus        74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~  153 (479)
T PRK10077         74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI  153 (479)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence            99999999999999999999999888877753            235678899999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhhhcc-----cCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHH
Q 018042          169 RGAINNGFQFSIGIGALAANFINYGTEQ-----IKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKL  243 (361)
Q Consensus       169 R~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~  243 (361)
                      |++++++.+.+..+|.++++.++..+..     ..+..+||+.|++.+++.++..+..+++||+|+++..+++ .+++++
T Consensus       154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~~~~~  232 (479)
T PRK10077        154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK-QEQAEG  232 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC-HHHHHH
Confidence            9999999999999999998887665532     2234689999999888887776666779999998877665 666665


Q ss_pred             HHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhh
Q 018042          244 MLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKV  323 (361)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  323 (361)
                      ..++..+.++.+...++..+....++   ...+..+. ..............+.+..+.+...++.|.+.++.|.+....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~  308 (479)
T PRK10077        233 ILRKIMGNTLATQALQEIKHSLDHGR---KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA  308 (479)
T ss_pred             HHHHHcCChhHHHHHHHHHHHHHHhh---hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchH
Confidence            55555544333222222221111111   01111111 111122222333445555666777888899988889988877


Q ss_pred             HHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          324 CQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       324 ~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      ........+..+++.++.++  ++||+|||++++.+
T Consensus       309 ~~~~~~~~~~~~i~~~~~g~--l~dr~g~r~~~i~~  342 (479)
T PRK10077        309 LLQTIIVGVINLTFTVLAIM--TVDKFGRKPLQIIG  342 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHhcChHHHHHh
Confidence            77777788888999999999  69999999887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=3.4e-33  Score=264.43  Aligned_cols=272  Identities=18%  Similarity=0.227  Sum_probs=214.7

Q ss_pred             hHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHh
Q 018042           22 TAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFV  101 (361)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (361)
                      .++.|.+.++++++.+.++++....+.+                    .|.+.+++|++..+.+++.+++.++.++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~i--------------------lp~i~~~~gls~~~~g~l~s~~~lG~iiG~li  221 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFV--------------------LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFF  221 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888888888889999988876665                    55567778999999999999999999999999


Q ss_pred             hHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHH
Q 018042          102 ASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIG  181 (361)
Q Consensus       102 ~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~  181 (361)
                      +|+++||+|||+++++++++.+++.++++++++++.++++|++.|++.+...+....++.|++|+++|++.+++...+..
T Consensus       222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~  301 (742)
T TIGR01299       222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM  301 (742)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccC----------CCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCC
Q 018042          182 IGALAANFINYGTEQIK----------GGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGT  251 (361)
Q Consensus       182 ~g~~~~~~~~~~~~~~~----------~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~  251 (361)
                      +|.++++.++..+....          ...+||+.+++.+++.++.++..+++||||+|+..+++ .+++.+.+++++..
T Consensus       302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr-~~eA~~iL~~i~~~  380 (742)
T TIGR01299       302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGK-HDEAWMILKLIHDT  380 (742)
T ss_pred             HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCC-HHHHHHHHHHHhcC
Confidence            99999888765543211          12479999999888887777777889999999999888 88888888888765


Q ss_pred             cch-----HHHH--HHHHHHHhh------hhhc------------------ccchhhhcccCchhHHHHHHHHHHHHHhc
Q 018042          252 NDV-----EAEF--DDLLKASST------AKTI------------------NHPFKKIIQRKYRPQLLMAMAIPFFQQVT  300 (361)
Q Consensus       252 ~~~-----~~~~--~~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (361)
                      +..     ....  +..+...+.      ++..                  ..+++++++.+.++++++...+ +++...
T Consensus       381 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~~~  459 (742)
T TIGR01299       381 NMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTLSF  459 (742)
T ss_pred             CCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHHHH
Confidence            421     1110  111110000      0000                  0135566767676666665544 566667


Q ss_pred             chhhhHHcHHHHHHh
Q 018042          301 GINVIAFYAPLLFRT  315 (361)
Q Consensus       301 ~~~~~~~~~~~~~~~  315 (361)
                      +++++..|+|.++++
T Consensus       460 ~yygl~~w~P~~~~~  474 (742)
T TIGR01299       460 GYYGLSVWFPDMIKH  474 (742)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            889999999987643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=2.5e-32  Score=254.16  Aligned_cols=322  Identities=35%  Similarity=0.574  Sum_probs=256.2

Q ss_pred             cchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCc--hhHHHHHHHHHHHHHH
Q 018042           20 KITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDS--QLLTSFTSSLYVAGLV   97 (361)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~   97 (361)
                      .........+....++.+..|++ +..+....+...+.........            ..+.  ++.+++.+...++..+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~s~~~lga~~  104 (513)
T KOG0254|consen   38 MISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDL------------STGEYSVRQGLLTSILNLGALV  104 (513)
T ss_pred             cCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccccc------------ccchhHHHHHHHHHHHHHHHHH
Confidence            34456677788888888999998 4333333333444333221111            1111  5669999999999999


Q ss_pred             HHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHH
Q 018042           98 ASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQ  177 (361)
Q Consensus        98 ~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~  177 (361)
                      ++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|++.|+|.|....+.+.|++|..|++.||...+..+
T Consensus       105 g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~  184 (513)
T KOG0254|consen  105 GSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQ  184 (513)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhC--CcchH
Q 018042          178 FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRG--TNDVE  255 (361)
Q Consensus       178 ~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  255 (361)
                      ....+|..++..++....+. . .+||..+.+..+++++..+..+++||+|+|+.++++ .++++....++++  +.+.+
T Consensus       185 l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a~~~l~~l~g~~~~~~~  261 (513)
T KOG0254|consen  185 LFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEAKRSLKRLRGLSPEDVE  261 (513)
T ss_pred             HHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHHHHHHHHHhCCCCcchH
Confidence            99999999997777766544 2 589999999999999888887789999999999888 8889999888888  44555


Q ss_pred             HHHHHHHHHHhhh--hhc-ccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhh
Q 018042          256 AEFDDLLKASSTA--KTI-NHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIEC  332 (361)
Q Consensus       256 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  332 (361)
                      .+.++.+.....+  ... +..+++++++..+++..+...+..++++++.+...+|.+.+++..|.+... ........+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~  340 (513)
T KOG0254|consen  262 VELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGV  340 (513)
T ss_pred             HHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHH
Confidence            5555444211111  111 224666776667788888999999999999999999999999998887654 455555666


Q ss_pred             cccccccchhhHHHHhhhccceeecccC
Q 018042          333 GGSIGFGRNMWVKWMNRVRWRKLDIYTL  360 (361)
Q Consensus       333 ~~~~g~~~~~~~~l~dr~grr~~~~~~~  360 (361)
                      ..+++.+++..  +.||+|||++++.+.
T Consensus       341 v~~~~t~~~~~--lvd~~gRr~lll~s~  366 (513)
T KOG0254|consen  341 VNFLGTLVATY--LVDRFGRRKLLLFGA  366 (513)
T ss_pred             HHHHHHHHHHH--HHHHhccHHHHHHhH
Confidence            67777777777  699999999987664

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=6.9e-31  Score=243.54  Aligned_cols=326  Identities=33%  Similarity=0.561  Sum_probs=232.5

Q ss_pred             CcchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHH
Q 018042           19 GKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVA   98 (361)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   98 (361)
                      .+..++.+..+.++.++.+..+++....+..........++            +...+-+.+..+.+++.+++.++..++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~   87 (481)
T TIGR00879        20 GSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKF------------TSANSDSYSSSLWGLVVSIFLVGGFIG   87 (481)
T ss_pred             CcccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhc------------CCcccCCCChhHHHHHHHHHHHHHHHH
Confidence            34456666677777778888899888877663221111111            001112356899999999999999999


Q ss_pred             HHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhH
Q 018042           99 SFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA---VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNG  175 (361)
Q Consensus        99 ~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~  175 (361)
                      +++.|+++||+|||++++.+.++..++.+++.+.   .+++.++++|++.|++.+...+....+++|++|+++|++++++
T Consensus        88 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  167 (481)
T TIGR00879        88 ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSL  167 (481)
T ss_pred             HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhH
Confidence            9999999999999999999999999999988554   3455899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchH
Q 018042          176 FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVE  255 (361)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (361)
                      .+.+..+|..+++.++.......+..+||+.|++.++..++..+..+++||+|++...+++ .+++++...+....++.+
T Consensus       168 ~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  246 (481)
T TIGR00879       168 YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGED  246 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC-hHHHHHHHHHHhCCCCCc
Confidence            9999999999999997111222234589999999777766666666779999987766555 444444333332222111


Q ss_pred             HH-H---HHHHHHHh-hhhhcccchhhhcccC--chhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhh
Q 018042          256 AE-F---DDLLKASS-TAKTINHPFKKIIQRK--YRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSK  328 (361)
Q Consensus       256 ~~-~---~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  328 (361)
                      .+ .   +......+ +.+..+..+++.++..  .+++.++...+.++........+.++.|.++++.|++..+++....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  326 (481)
T TIGR00879       247 KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSI  326 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHH
Confidence            11 0   11011111 1111122234444321  2355555566666666666677888999999889999988888888


Q ss_pred             hhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          329 WIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       329 ~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      ...++.+++.++.++  ++||++||+.+..+
T Consensus       327 ~~~~~~~~~~~~~g~--l~d~~~~~~~~~~~  355 (481)
T TIGR00879       327 IVGAVNFAFTFVAIF--LVDRFGRRPLLLIG  355 (481)
T ss_pred             HHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence            889999999999999  69999999876544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.98  E-value=3.2e-32  Score=232.82  Aligned_cols=297  Identities=15%  Similarity=0.109  Sum_probs=236.8

Q ss_pred             CcchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHH
Q 018042           19 GKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVA   98 (361)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   98 (361)
                      +..++.++.+.+...++.....+..-.++.+                    .|.+.++.++|.+|.|.+.+.+.+.+.++
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a--------------------~p~l~e~~~lsk~~lG~i~s~f~i~YG~s   80 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLA--------------------MPALIEDGGLSKTQLGILGSAFSITYGVS   80 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------------------cHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            3445566777777777777777777777666                    78888999999999999999999999999


Q ss_pred             HHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHH
Q 018042           99 SFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQF  178 (361)
Q Consensus        99 ~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~  178 (361)
                      .++.|.++||.+.|+.+..++++.++.+++++++++.+.+.++.+++|..+|...|++...++.|+++++||+..++++.
T Consensus        81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~  160 (448)
T COG2271          81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNT  160 (448)
T ss_pred             HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHH
Q 018042          179 SIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAE  257 (361)
Q Consensus       179 ~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (361)
                      +.++|..+.+++..+ .....+.+||..|++.++++++..+..++ .+|+|+..-.         +..++.+++.     
T Consensus       161 shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL---------P~ie~~~~d~-----  225 (448)
T COG2271         161 SHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL---------PPIEEYRGDP-----  225 (448)
T ss_pred             hhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC---------CCHHHhhcCc-----
Confidence            999999998888622 22333458999999999999888777655 8888853211         1111111110     


Q ss_pred             HHHHHHHHhhhhhcccchhhhc-ccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhhccc
Q 018042          258 FDDLLKASSTAKTINHPFKKII-QRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGS  335 (361)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~  335 (361)
                       .+.  ..++++.+.-+.++++ +...+++.++.+++..+.....-+.+..|.|.|+.+ .|+|..++......+-.+++
T Consensus       226 -~e~--~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl  302 (448)
T COG2271         226 -LEI--YEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGL  302 (448)
T ss_pred             -hhh--hhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence             000  0011111112333333 455556777788888888888889999999999954 59999999999999999999


Q ss_pred             ccccchhhHHHHhhh--cccee
Q 018042          336 IGFGRNMWVKWMNRV--RWRKL  355 (361)
Q Consensus       336 ~g~~~~~~~~l~dr~--grr~~  355 (361)
                      +|.++.||  ++||+  |||..
T Consensus       303 ~G~Ll~Gw--lSDklfkgrR~p  322 (448)
T COG2271         303 PGTLLAGW--LSDKLFKGRRGP  322 (448)
T ss_pred             HHHHHHHH--HHHHhcccccch
Confidence            99999999  69997  67754

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.98  E-value=3.6e-31  Score=240.12  Aligned_cols=299  Identities=14%  Similarity=0.156  Sum_probs=221.3

Q ss_pred             HHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHH
Q 018042           25 VILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASS  104 (361)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  104 (361)
                      +|....+++++.+++++|....+..                    .|.+++|+|++.++.+++.+++.+++.+++++.|+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~--------------------~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~   65 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFA--------------------GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNI   65 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHH--------------------HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3455666666777888888887766                    56778999999999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHH
Q 018042          105 VTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGA  184 (361)
Q Consensus       105 l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~  184 (361)
                      ++||+|||+++..++++..++++++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.
T Consensus        66 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~  145 (412)
T TIGR02332        66 MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM  145 (412)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccc---CCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCc-chHHHHH
Q 018042          185 LAANFINYGTEQI---KGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTN-DVEAEFD  259 (361)
Q Consensus       185 ~~~~~~~~~~~~~---~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  259 (361)
                      +++++++..+...   .+..+||+.|++.+++.++..+.. +++||+|+..  +..++++++...+..+.+. +.+++.+
T Consensus       146 ~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~  223 (412)
T TIGR02332       146 ALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQPEG  223 (412)
T ss_pred             HHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccccccccc
Confidence            9999997766532   234589999999888877665544 5689988521  0011111111111111100 0000000


Q ss_pred             HHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhc--CCCChhhHHHhhhhhhccccc
Q 018042          260 DLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI--GLGRLKVCQLSKWIECGGSIG  337 (361)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~g  337 (361)
                      +.   .++....+..+++++    . +.++...+.+++.....+.+..|.|.++++.  |++..+++.+.....++.++|
T Consensus       224 ~~---~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g  295 (412)
T TIGR02332       224 AF---AHAAMPQRSMLREIF----T-PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFG  295 (412)
T ss_pred             cc---ccccccHHHHHHHhc----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHH
Confidence            00   000000011122222    1 2234445555556666778889999999874  677888888899999999999


Q ss_pred             ccchhhHHHHhhhcccee
Q 018042          338 FGRNMWVKWMNRVRWRKL  355 (361)
Q Consensus       338 ~~~~~~~~l~dr~grr~~  355 (361)
                      .++.++  ++||++||+.
T Consensus       296 ~l~~g~--l~dr~~~r~~  311 (412)
T TIGR02332       296 MIWWSR--HSDRLKERKH  311 (412)
T ss_pred             HHHHHH--HhcccCccHH
Confidence            999999  6999997764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=6.8e-31  Score=243.65  Aligned_cols=286  Identities=16%  Similarity=0.160  Sum_probs=204.2

Q ss_pred             HHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCc----hhHHH--HHHHHHHHHHHHHHh
Q 018042           28 SCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDS----QLLTS--FTSSLYVAGLVASFV  101 (361)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~  101 (361)
                      ....++++.++++||..+++..                    .|.+.++++.+.    +..+.  ..++.+++..+++++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~--------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~   76 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFV--------------------AYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLF   76 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667889999999987766                    222333333222    11222  247788999999999


Q ss_pred             hHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchh
Q 018042          102 ASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYM--------LIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAIN  173 (361)
Q Consensus       102 ~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~  173 (361)
                      .|+++||+|||+++.+++++++++++++++++|++.        ++++|+++|++.|..++....+++|++|+++|++..
T Consensus        77 ~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~  156 (490)
T PRK10642         77 FGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMG  156 (490)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHH
Confidence            999999999999999999999999999999999875        788999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccc-----CCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHh
Q 018042          174 NGFQFSIGIGALAANFINYGTEQI-----KGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRV  248 (361)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~  248 (361)
                      ++...+..+|.++++.+...+...     ..++|||+.|++.+++.++..+....+||+|++...+++ .++..      
T Consensus       157 ~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~------  229 (490)
T PRK10642        157 SWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK-LEQGD------  229 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh-hhhhc------
Confidence            999988888888887665443321     124699999999877666555555668999986532211 00000      


Q ss_pred             hCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHHHh
Q 018042          249 RGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLS  327 (361)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~  327 (361)
                       .              +...++.+.++++++++ .++...... ...+.....++.+..|.|.+++ ..|++........
T Consensus       230 -~--------------~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~  292 (490)
T PRK10642        230 -R--------------EGLQDGPKVSFKEIATK-HWRSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLII  292 (490)
T ss_pred             -c--------------ccccccccCCHHHHHHH-hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence             0              00000112345555543 222333222 2223333455677889999985 4598888877777


Q ss_pred             hhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          328 KWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       328 ~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      ....++.+++.++.++  ++||+|||+.+..+
T Consensus       293 ~~~~~~~~~~~~~~g~--l~dr~grr~~~~~~  322 (490)
T PRK10642        293 IAIMIGMLFVQPVMGL--LSDRFGRRPFVILG  322 (490)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHhccHHHHHHH
Confidence            7788888899999999  69999999876543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.1e-30  Score=226.29  Aligned_cols=267  Identities=16%  Similarity=0.167  Sum_probs=212.3

Q ss_pred             HHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHH
Q 018042           26 ILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV  105 (361)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  105 (361)
                      +...+..+++.|..+.+-.+....                    .|++.+|+|+|..+.|++.+.|.++..++.++...+
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gL--------------------Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~l   71 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGL--------------------LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALL   71 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhc--------------------hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556667777777666555                    788899999999999999999999999999999999


Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHH
Q 018042          106 TRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGAL  185 (361)
Q Consensus       106 ~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~  185 (361)
                      +||+.||++++..+.++.++++++++++|++.++++|++.|+..|..++....+..+..|+++|++++++...+..++.+
T Consensus        72 t~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v  151 (394)
T COG2814          72 TGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATV  151 (394)
T ss_pred             HcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 018042          186 AANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKA  264 (361)
Q Consensus       186 ~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (361)
                      +|.+++.++.+..   |||+.|+..+.++++..+..+ .+|  |+....++.                            
T Consensus       152 ~GvPLGt~ig~~~---GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~----------------------------  198 (394)
T COG2814         152 LGVPLGTFLGQLF---GWRATFLAIAVLALLALLLLWKLLP--PSEISGSLP----------------------------  198 (394)
T ss_pred             HhccHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC----------------------------
Confidence            9999999998765   799999999999888877664 477  211000000                            


Q ss_pred             HhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHH-HhcCCCChhhHHHhhhhhhcccccccchhh
Q 018042          265 SSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMW  343 (361)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~  343 (361)
                           .+.++..+.++++   +.+.......+ .+.+.+....|...++ +..|+|.+...+....+++++++|..++|+
T Consensus       199 -----~~~~~~~~~l~~p---~v~~~l~~t~l-~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr  269 (394)
T COG2814         199 -----GPLRTLLRLLRRP---GVLLGLLATFL-FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR  269 (394)
T ss_pred             -----cchhHHHHHhcCc---hHHHHHHHHHH-HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhh
Confidence                 0011123333443   33333333333 3344444444544455 556999999999999999999999999999


Q ss_pred             HHHHhhhccceeec
Q 018042          344 VKWMNRVRWRKLDI  357 (361)
Q Consensus       344 ~~l~dr~grr~~~~  357 (361)
                        +.|| +.|+.+.
T Consensus       270 --l~dr-~~~~~l~  280 (394)
T COG2814         270 --LADR-GPRRALI  280 (394)
T ss_pred             --hccc-cchhHHH
Confidence              6999 6665543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=5.2e-30  Score=234.31  Aligned_cols=281  Identities=17%  Similarity=0.142  Sum_probs=198.1

Q ss_pred             hHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHH---HHHHHHHHHHHHH
Q 018042           22 TAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLT---SFTSSLYVAGLVA   98 (361)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~   98 (361)
                      +++++.....++++.+++++|...++..  .+...+++.|.               +.+..+.+   ...+...++..++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ig   79 (432)
T PRK10406         17 TRRRIWAIVGASSGNLVEWFDFYVYSFC--SLYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFLMRPIG   79 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCC---------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666677889999999887665  22223332211               23334333   3344555566699


Q ss_pred             HHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhcCCccccc
Q 018042           99 SFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY--------MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRG  170 (361)
Q Consensus        99 ~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~  170 (361)
                      +++.|+++||+|||+++..+.+++.++++++++++++.        .++++|+++|++.|..++...++++|++|+++|+
T Consensus        80 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg  159 (432)
T PRK10406         80 GWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKG  159 (432)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCccc
Confidence            99999999999999999999999999999999988764        5888999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhhcccC-----CCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHH
Q 018042          171 AINNGFQFSIGIGALAANFINYGTEQIK-----GGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLML  245 (361)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~  245 (361)
                      ++.++.+.+...|.++++.+...+....     ...|||+.|++.+++.++........||+|++..+         +  
T Consensus       160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~---------~--  228 (432)
T PRK10406        160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR---------A--  228 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh---------h--
Confidence            9999988888888888777655444321     24699999999888777665554557887642100         0  


Q ss_pred             HHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhH
Q 018042          246 QRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVC  324 (361)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~  324 (361)
                                          .   +++.+++++++++   +.+.......+.....++.+..|.|.++++ .|++..+.+
T Consensus       229 --------------------~---~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~  282 (432)
T PRK10406        229 --------------------L---KEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVAS  282 (432)
T ss_pred             --------------------h---cccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence                                0   0012355555432   222222222222233456677889998854 699988888


Q ss_pred             HHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          325 QLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       325 ~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      .......++..++..+.|+  ++||++||+++..
T Consensus       283 ~~~~i~~~~~~i~~~~~G~--l~Dr~grr~~~~~  314 (432)
T PRK10406        283 GIMTAALFVFMLIQPLIGA--LSDKIGRRTSMLC  314 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHcCchHHHHH
Confidence            8777777777788888888  6999999986543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.97  E-value=1.2e-35  Score=273.45  Aligned_cols=316  Identities=30%  Similarity=0.588  Sum_probs=244.7

Q ss_pred             HHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 018042           31 MAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG  110 (361)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G  110 (361)
                      +.+++.+.+|||....+.......+...+..+..+         .+.+.++.+.++..+...+|..+|+++.|+++||+|
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G   74 (451)
T PF00083_consen    4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSE---------SSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG   74 (451)
T ss_pred             eeHHHHHHHHHHHHHHhhHHhhhhhhhcccccccc---------ccccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence            34556689999998887664433322222211111         111114567889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHH
Q 018042          111 RKPSVLMGGAAFLAGSALGGAAV---NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAA  187 (361)
Q Consensus       111 rr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~  187 (361)
                      ||+.++++.++..++.++.++++   +++.+.++|++.|++.|...+....++.|..|+++|++..++.+.+..+|.+++
T Consensus        75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~  154 (451)
T PF00083_consen   75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA  154 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999   999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhh
Q 018042          188 NFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASST  267 (361)
Q Consensus       188 ~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (361)
                      ..++.......++.+||+.+++.++++++..+..+++||||+|+..+++ .||+++..+++++++..+++.++..++.++
T Consensus       155 ~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~  233 (451)
T PF00083_consen  155 SLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR-DEEAEKVLRKLRGKEIEDEEIEEIKAEKKE  233 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeccccc-cccccccccccccccccccccccccccccc
Confidence            8887666544444679999999999988887777889999999998888 778888888876665444444433333333


Q ss_pred             hhhcccchhhhcccCc-hhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHH
Q 018042          268 AKTINHPFKKIIQRKY-RPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKW  346 (361)
Q Consensus       268 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l  346 (361)
                      .++.+..++++++++. +++......+..+.+..+.+...+|.+.++++.|.+..  ........+..+++.+++.+  +
T Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~  309 (451)
T PF00083_consen  234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIF--L  309 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc--c
Confidence            3233356777776543 56666667777777777777888888988888777777  33445556667777777777  6


Q ss_pred             HhhhccceeecccC
Q 018042          347 MNRVRWRKLDIYTL  360 (361)
Q Consensus       347 ~dr~grr~~~~~~~  360 (361)
                      .||+|||++++.+.
T Consensus       310 ~~~~GRr~~~i~~~  323 (451)
T PF00083_consen  310 IDRFGRRKLLIIGL  323 (451)
T ss_pred             cccccccccccccc
Confidence            99999999887664

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=2.1e-29  Score=228.78  Aligned_cols=304  Identities=15%  Similarity=0.174  Sum_probs=217.5

Q ss_pred             chHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHH
Q 018042           21 ITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASF  100 (361)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (361)
                      .++++|.....+.++.+.++++....+.+                    .|.+++++|++..+.+++.+.+.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~   65 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV--------------------LAEVAGEFGLTTVDAASLISAALISRWFGAL   65 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCChhhHHHHHHHHHHHHHHHHH
Confidence            34566666777778888888888877666                    5566788899999999999999999999999


Q ss_pred             hhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHH
Q 018042          101 VASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSI  180 (361)
Q Consensus       101 ~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~  180 (361)
                      +.|+++||+|||++++.+.++.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+.
T Consensus        66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  145 (405)
T TIGR00891        66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY  145 (405)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHH
Q 018042          181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDD  260 (361)
Q Consensus       181 ~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (361)
                      .+|.++++.++..+....+ .+||+.|++.++..++..+.....||++++..++++ +++.++..++..+.++.      
T Consensus       146 ~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------  217 (405)
T TIGR00891       146 AVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG-KALVRTMVDILYGGEHR------  217 (405)
T ss_pred             HHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh-hhhhhhHHHHHhccchh------
Confidence            9999999998776654322 259999988776666555555668888754322211 11111111111100000      


Q ss_pred             HHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHHHhhhhhhccccccc
Q 018042          261 LLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFG  339 (361)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~  339 (361)
                      .+   +..++.....++.  ...+++.+...................+.|.++. +.|++..+.+.+.....++.+++.+
T Consensus       218 ~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~  292 (405)
T TIGR00891       218 IA---NIVMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGC  292 (405)
T ss_pred             hh---hhhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            00   0000000011111  1111221221222222212222345566777774 5699999999999999999999999


Q ss_pred             chhhHHHHhhhccceeeccc
Q 018042          340 RNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       340 ~~~~~~l~dr~grr~~~~~~  359 (361)
                      +.++  +.||+|||+.+..+
T Consensus       293 ~~g~--l~dr~g~~~~~~~~  310 (405)
T TIGR00891       293 VFGF--LGDWLGRRKAYVCS  310 (405)
T ss_pred             HHHH--HHHHhCchhhhHHH
Confidence            9999  69999999876543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=2.4e-29  Score=229.96  Aligned_cols=288  Identities=18%  Similarity=0.197  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhH
Q 018042           24 FVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVAS  103 (361)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  103 (361)
                      +++.....+.++.+.++++....++.                    .|.+++++|+++.+.++..+.+.++..+++++.|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g   74 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYI--------------------MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFG   74 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556667777888888765554                    5566788899999999999999999999999999


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHH
Q 018042          104 SVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIG  183 (361)
Q Consensus       104 ~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g  183 (361)
                      +++||+|||+++..+.++..+++++.+++++++.++++|++.|++.+..++....++.|++|+|+|+++.++...+..+|
T Consensus        75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  154 (426)
T PRK12307         75 LLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIG  154 (426)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHH
Q 018042          184 ALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLK  263 (361)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (361)
                      .++++.+...+.   +..+||+.|++..+..++........||++++..++.+             .+++.         
T Consensus       155 ~~~~~~l~~~l~---~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------~~~~~---------  209 (426)
T PRK12307        155 NIIAAYFMPSFA---EAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS-------------GKGKH---------  209 (426)
T ss_pred             HHHHHHHHHHHc---ccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh-------------ccccc---------
Confidence            999988865554   33589999988655443333222335666533211100             00000         


Q ss_pred             HHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhh
Q 018042          264 ASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMW  343 (361)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~  343 (361)
                      ..+..+..+.++++.++++..+....... ..+........+..+.|.++++.|.+....+.......++.+++.++.++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~  288 (426)
T PRK12307        210 SQSAWSVFSLSMKGLFNRAQFPLTLCVFI-VLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGL  288 (426)
T ss_pred             cccchhhhhHHHHHHHhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000011224556665544333332222 22222333344667889898888999888888888889999999999999


Q ss_pred             HHHHhhhccceeeccc
Q 018042          344 VKWMNRVRWRKLDIYT  359 (361)
Q Consensus       344 ~~l~dr~grr~~~~~~  359 (361)
                        +.||++||+.+..+
T Consensus       289 --l~dr~~~~~~~~~~  302 (426)
T PRK12307        289 --CADRIGLKKTFSIG  302 (426)
T ss_pred             --HHHHhccHHHHHHH
Confidence              69999999876544

>TIGR00898 2A0119 cation transport protein

Probab=99.96  E-value=2.4e-29  Score=234.89  Aligned_cols=274  Identities=18%  Similarity=0.208  Sum_probs=204.7

Q ss_pred             cccccccccCC---chhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 018042           70 DTKISNYCKFD---SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLG  146 (361)
Q Consensus        70 ~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  146 (361)
                      .|.+.+|+|++   ..+.++..+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++.|
T Consensus       112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G  191 (505)
T TIGR00898       112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG  191 (505)
T ss_pred             cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            56789999999   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  226 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  226 (361)
                      ++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.      +||+.+++.+++.++..+..+++||
T Consensus       192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999877654      4999999998888877777778999


Q ss_pred             ChhHHHhhCCCHHHHHHHHHHhhCCcchH--HHHHHHH-HHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchh
Q 018042          227 TPNSLIQRKSDHQKAKLMLQRVRGTNDVE--AEFDDLL-KASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGIN  303 (361)
Q Consensus       227 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (361)
                      +|+|+..+++ .+++.+..++..+.++..  .+..+.. ++...+++.+.+++++++++..+...+.....++.....++
T Consensus       266 sp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  344 (505)
T TIGR00898       266 SPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYY  344 (505)
T ss_pred             ChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988887 666666665554333211  1111111 11111111234677777665544444433333333222222


Q ss_pred             hhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          304 VIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       304 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                          ..+.+....+.+.   ........+..+++.++.++  +.||+|||+.+.++
T Consensus       345 ----~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~--l~dr~grr~~~~~~  391 (505)
T TIGR00898       345 ----GLVLDLGNLGGNI---YLDLFISGLVELPAKLITLL--LIDRLGRRYTMAAS  391 (505)
T ss_pred             ----HHhccccccCCCh---HHHHHHHHHHHHHHHHHHHH--HHHHhCCHHHHHHH
Confidence                2222233344442   23334456667788888888  69999999876654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.96  E-value=8.2e-30  Score=235.23  Aligned_cols=297  Identities=11%  Similarity=0.014  Sum_probs=211.9

Q ss_pred             hHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHh
Q 018042           22 TAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFV  101 (361)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (361)
                      .+..+.+..++.++.+....+...++..                    .|.+.+|+|++.++.|++.+++.+++.+++++
T Consensus        24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~--------------------~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~   83 (467)
T PRK09556         24 FKPFMQSYLVVFIGYLTMYLIRKNFKAA--------------------QNDMISTYGLSTTELGMIGLGFSITYGVGKTL   83 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhh--------------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            3345555666666667667777777665                    56778889999999999999999999999999


Q ss_pred             hHHHHHhhchhHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHH
Q 018042          102 ASSVTRAFGRKPSVLMGGAAFLAGSALGGA-----AVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGF  176 (361)
Q Consensus       102 ~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~  176 (361)
                      .|+++||+|||+++..+.++++++++..+.     +++++.+++.|++.|++.+...+....+++|++|+++|+++++++
T Consensus        84 ~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~  163 (467)
T PRK09556         84 VGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFW  163 (467)
T ss_pred             hhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEee
Confidence            999999999999999888888777766655     589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCChhHHHhhCCCHHHHHHHHHHhhCCcchH
Q 018042          177 QFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVE  255 (361)
Q Consensus       177 ~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (361)
                      ..+..+|.++++++...+.......+||..|.+.+++.++..+..+ +.+++|+..... + .++   .   .....+.+
T Consensus       164 ~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~-~~~---~---~~~~~~~~  235 (467)
T PRK09556        164 NISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-K-AEE---I---FGEPISEE  235 (467)
T ss_pred             ecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-C-hhh---c---ccCccchh
Confidence            9999999999988865444321112699988887777766655544 467766421110 0 111   0   00000000


Q ss_pred             HHHHHHHHHHhhhhhcccchhhhc-ccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHHHhhhhhhc
Q 018042          256 AEFDDLLKASSTAKTINHPFKKII-QRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECG  333 (361)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~  333 (361)
                      .       + +.+ +.+.+.++.+ +...+.+.++...+..++..........|.|.|++ ..|+|..+++.......++
T Consensus       236 ~-------~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~  306 (467)
T PRK09556        236 D-------K-ETE-STDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIG  306 (467)
T ss_pred             h-------h-ccc-cccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            0       0 000 0001111111 11112233444444444444555668889999885 4699999999999889999


Q ss_pred             ccccccchhhHHHHhhhccceeec
Q 018042          334 GSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       334 ~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      .++|.++.|+  ++||++||+...
T Consensus       307 ~~ig~~~~G~--lsDr~g~r~~~~  328 (467)
T PRK09556        307 ALVGSLLWGW--LSDLANGRRALV  328 (467)
T ss_pred             HHHHHHHHHH--HHHHHCCCchHH
Confidence            9999999999  699999987654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=5e-29  Score=227.91  Aligned_cols=286  Identities=13%  Similarity=0.110  Sum_probs=206.5

Q ss_pred             hHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHh
Q 018042           22 TAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFV  101 (361)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (361)
                      ++.++.......++.+...++....+..                    .|.+.+++|++.++.+++.+.+.+++.+++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~   77 (434)
T PRK11663         18 RYWRRHILITMYLGYALFYFTRKSFNAA--------------------MPEMLADLGLSRSDIGLLATLFYITYGVSKFV   77 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHh--------------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444555556666655554444                    55667788999999999999999999999999


Q ss_pred             hHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHH
Q 018042          102 ASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIG  181 (361)
Q Consensus       102 ~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~  181 (361)
                      .|+++||+|||+++.++.++..+++++.+++++++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..
T Consensus        78 ~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  157 (434)
T PRK11663         78 SGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHN  157 (434)
T ss_pred             hhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHh-cccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHH
Q 018042          182 IGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG-ALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDD  260 (361)
Q Consensus       182 ~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (361)
                      +|.++++.+...+..   ..+||+.|++.+++.++..+. .+++||+|++...+.. .+..++          .++.   
T Consensus       158 ~g~~~~~~~~~~l~~---~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~----------~~~~---  220 (434)
T PRK11663        158 VGGALIPLVVGAIAL---HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV-GEWRHD----------ALEL---  220 (434)
T ss_pred             HHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc-cccccc----------cccc---
Confidence            999999998776653   358999999887776655443 3557887754211110 000000          0000   


Q ss_pred             HHHHHhhhhhcccchhhhcc-cCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHHHhhhhhhcccccc
Q 018042          261 LLKASSTAKTINHPFKKIIQ-RKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGF  338 (361)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~  338 (361)
                          .++.+..+.+.++.++ ...+++.++...+..+........+..|.|.+++ +.|++..+++.....+.+++++|.
T Consensus       221 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~  296 (434)
T PRK11663        221 ----AQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA  296 (434)
T ss_pred             ----chhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence                0000000112222221 1112233333333333334445567788999985 569999999999999999999999


Q ss_pred             cchhhHHHHhhh
Q 018042          339 GRNMWVKWMNRV  350 (361)
Q Consensus       339 ~~~~~~~l~dr~  350 (361)
                      ++.|+  +.||+
T Consensus       297 ~~~g~--l~dr~  306 (434)
T PRK11663        297 LVAGW--GSDKL  306 (434)
T ss_pred             HHHhh--hHHHh
Confidence            99999  69998

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=8.8e-29  Score=224.84  Aligned_cols=279  Identities=19%  Similarity=0.205  Sum_probs=215.4

Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhh
Q 018042           23 AFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVA  102 (361)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (361)
                      ++.|....++.+..+.++++....+..                    .|.+.+++|++.++.+++.+.+.++..+++++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~   70 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVA--------------------APRMAQEFGLDVAQMGWAFSAGILGLLPGALLG   70 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            366777777777888889988777665                    566677889999999999999999999999999


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHH
Q 018042          103 SSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI  182 (361)
Q Consensus       103 g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~  182 (361)
                      |+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+
T Consensus        71 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  150 (406)
T PRK11551         71 GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF  150 (406)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHH
Q 018042          183 GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDL  261 (361)
Q Consensus       183 g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (361)
                      |..+++.++..+..   ..+||+.|++.++..++..+.. .++||+|++..++++ +++.+                   
T Consensus       151 g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-------------------  207 (406)
T PRK11551        151 GGALASVIGVLAAG---DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA-GKQRA-------------------  207 (406)
T ss_pred             HHHHHHHHHHHHcc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-chhhh-------------------
Confidence            99999998765543   3579999988776655555444 457888754322111 00000                   


Q ss_pred             HHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccch
Q 018042          262 LKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRN  341 (361)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~  341 (361)
                                 ...+..+++...++.. .....++......+....|.|.++++.|++..+.+.......++.+++.++.
T Consensus       208 -----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~  275 (406)
T PRK11551        208 -----------PVLRALFGEGRATATL-LLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLI  275 (406)
T ss_pred             -----------hhHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHH
Confidence                       0001111111111111 1222223333344566778899998889999999999999999999999999


Q ss_pred             hhHHHHhhhccceeecc
Q 018042          342 MWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       342 ~~~~l~dr~grr~~~~~  358 (361)
                      ++  +.||+|||+.+..
T Consensus       276 g~--l~dr~g~~~~~~~  290 (406)
T PRK11551        276 GA--LMDRLRPRRVVLL  290 (406)
T ss_pred             HH--HHHHHhHHHHHHH
Confidence            99  6999999887653

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=5.5e-28  Score=221.09  Aligned_cols=281  Identities=16%  Similarity=0.212  Sum_probs=191.7

Q ss_pred             HHHHHHHHHhhhhccccccccccccCChHHH-HhhchhhhhcccccccccccccCCchhHHHHH-----HHHHHHHHHHH
Q 018042           26 ILSCMMAGMGGVIFGYDIGISGGVTSMEPFL-EKFFPEVHRKMKEDTKISNYCKFDSQLLTSFT-----SSLYVAGLVAS   99 (361)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~   99 (361)
                      +.......++.++++||....+.+  .+..+ +.++|                +.++. .++..     ++.+++..+++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~g~   81 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGIT--AALVFNREFFP----------------QVSPA-MGTLAAFATFGVGFLFRPLGG   81 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCC----------------CCCcH-HHHHHHHHHHHHHHHHHhhHH
Confidence            345566667889999999886654  11111 12221                22333 34432     34556778999


Q ss_pred             HhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccc
Q 018042          100 FVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY--------MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA  171 (361)
Q Consensus       100 ~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~  171 (361)
                      ++.|+++||+|||+++..+.++++++++++++++++.        .++++|+++|++.|..++....++.|++|+++|++
T Consensus        82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  161 (438)
T PRK09952         82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF  161 (438)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence            9999999999999999999999999999999999987        58889999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcccC-----CCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHH
Q 018042          172 INNGFQFSIGIGALAANFINYGTEQIK-----GGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQ  246 (361)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~  246 (361)
                      ..+..+.+..+|.+++..+...+....     .+.+||+.|++.+++.++........||+|++...+++ .++      
T Consensus       162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~-~~~------  234 (438)
T PRK09952        162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE-QAA------  234 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh-ccc------
Confidence            999999999999988876655443221     24689999998887765544444457888765322211 000      


Q ss_pred             HhhCCcchHHHHHHHHHHHhhhhhcccchh-hhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhH
Q 018042          247 RVRGTNDVEAEFDDLLKASSTAKTINHPFK-KIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVC  324 (361)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~  324 (361)
                                            .+.+.+.. .+++++   +.+.......+......+....|.|.+++ ..|.+.....
T Consensus       235 ----------------------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~  289 (438)
T PRK09952        235 ----------------------AKKRIPVIEALLRHP---GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFL  289 (438)
T ss_pred             ----------------------ccccCCHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence                                  00001111 122222   22222222233333445667778888875 4588876655


Q ss_pred             HHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          325 QLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       325 ~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .......+..+++.++.|+  ++||+|||+++..+
T Consensus       290 ~~~~~~g~~~~i~~~~~g~--l~Dr~grr~~~~~~  322 (438)
T PRK09952        290 NIGLLVGGLSCLTIPCFAW--LADRFGRRRVYITG  322 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHhCchHHHHHH
Confidence            5555566667788888898  69999999876543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=5e-28  Score=221.42  Aligned_cols=274  Identities=17%  Similarity=0.244  Sum_probs=194.3

Q ss_pred             HHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHH-HHHH-----HHHHHHHHHh
Q 018042           28 SCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSF-TSSL-----YVAGLVASFV  101 (361)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~  101 (361)
                      ......++.+++.+|....+..                    .|.+.++++.++.+.+.+ .+..     .++..+++++
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~--------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~   75 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFY--------------------ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIV   75 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4666667889999999988776                    566777788777665443 3322     2233478999


Q ss_pred             hHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchh
Q 018042          102 ASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY--------MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAIN  173 (361)
Q Consensus       102 ~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~  173 (361)
                      .|+++||+|||+.++.+.+++.+++++++++++++        .++++|++.|++.+...+....+++|++|+++|++++
T Consensus        76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  155 (434)
T PRK15075         76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT  155 (434)
T ss_pred             HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence            99999999999999999999999999999999877        4688899999999999998999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccc-----CCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHh
Q 018042          174 NGFQFSIGIGALAANFINYGTEQI-----KGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRV  248 (361)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~  248 (361)
                      ++...+..+|..+++.++..+...     .++.+||+.|++..+...+........||++++..++++            
T Consensus       156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------------  223 (434)
T PRK15075        156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR------------  223 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc------------
Confidence            999988888888877777665432     135699999987654432222222223443211100000            


Q ss_pred             hCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHh
Q 018042          249 RGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLS  327 (361)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~  327 (361)
                                          .+.++.+++..++   ++.+.......+.+....+.+..|.|.|+++ .|++..+++...
T Consensus       224 --------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~  280 (434)
T PRK15075        224 --------------------PSMREIFRSLAAN---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVT  280 (434)
T ss_pred             --------------------cccccHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence                                0000111111111   1222222223333444566788899999976 699988888888


Q ss_pred             hhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          328 KWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       328 ~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      ....++++++.++.|+  ++||+|||+.+..
T Consensus       281 ~~~~~~~~~~~~~~g~--l~Dr~g~r~~~~~  309 (434)
T PRK15075        281 LCVGVSNFIWLPIGGA--LSDRIGRRPVLIA  309 (434)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHhcchHHHHH
Confidence            8888999999999999  6999999987654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.96  E-value=2e-28  Score=227.31  Aligned_cols=303  Identities=10%  Similarity=0.021  Sum_probs=219.5

Q ss_pred             HHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHH
Q 018042           25 VILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASS  104 (361)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  104 (361)
                      +|.....++++.++...|.+..+.+                    .|++.+++|.+.++.+|+.+.+.++..++.++.|+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a--------------------~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~   63 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVA--------------------APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGA   63 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888889999999988777                    67778889999999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcC-CcccccchhhHHHHHHHHH
Q 018042          105 VTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMA-PARYRGAINNGFQFSIGIG  183 (361)
Q Consensus       105 l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~-~~~~R~~~~~~~~~~~~~g  183 (361)
                      ++||+|||++++.+.++..++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|
T Consensus        64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g  143 (495)
T PRK14995         64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG  143 (495)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888888787776 6789999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHH------------HHHhhC
Q 018042          184 ALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLM------------LQRVRG  250 (361)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~------------~~~~~~  250 (361)
                      ..++|.+++.+.+.   .+|||.|++...+.++..+.. +++||+++.   +.++.+.....            .+....
T Consensus       144 ~~~gp~lgg~l~~~---~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~---~~~~~d~~g~~~~~~~~~~l~~~~~~~~~  217 (495)
T PRK14995        144 AAFGPLVGGILLEH---FYWGSVFLINVPIVLVVMGLTARYVPRQAGR---RDQPLNLGHALMLIVAILLLVYSAKTALK  217 (495)
T ss_pred             HHHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCCChHhHHHHHHHHHHHHHHHHhccc
Confidence            99999998887754   589999999877666655444 457776531   11101110000            000000


Q ss_pred             Cc-chHHHHHH-------HHHHHhhhhhcccch--hhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCC
Q 018042          251 TN-DVEAEFDD-------LLKASSTAKTINHPF--KKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLG  319 (361)
Q Consensus       251 ~~-~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s  319 (361)
                      .. +.......       ...-...+.+.+.+.  .++++++..    ....+..+..........++.|.+++. .|+|
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s  293 (495)
T PRK14995        218 GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRII----LSGVVMAMTAMITLVGFELLMAQELQFVHGLS  293 (495)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            00 00000000       000000111111121  234444322    222233333333445667788888875 5999


Q ss_pred             ChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          320 RLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       320 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +.+++.......++..++.++.|+  +.||+|+|+.+..+
T Consensus       294 ~~~ag~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~g  331 (495)
T PRK14995        294 PLEAGMFMLPVMVASGFSGPIAGI--LVSRLGLRLVATGG  331 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCchHHHHHH
Confidence            999999999999999999999999  69999998876544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.96  E-value=5.7e-28  Score=218.19  Aligned_cols=241  Identities=16%  Similarity=0.072  Sum_probs=188.3

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+.+++|.+.++.++..+.+.+++.+++++.|+++||+|||+++..+.++..++++.+++++|++.++++|++.|++.
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~  111 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH  111 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +...+...+++.|++|+++|++++++...+..+|..++++++..+.+   +.+||+.|++.+++.++..+.. .++||.|
T Consensus       112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---YLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---HhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            98899999999999999999999999999999999999999877654   3489999999888776665444 3366643


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +     ++ +++                               .++.++.++++..+.......   +. .........+
T Consensus       189 ~-----~~-~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~  227 (390)
T PRK03545        189 S-----EH-SGS-------------------------------LKSLPLLFRRPALVSLYLLTV---VV-VTAHFTAYSY  227 (390)
T ss_pred             C-----CC-cch-------------------------------HHHHHHHHhCcHHHHHHHHHH---HH-HHHHHHHHHH
Confidence            2     00 000                               001233444432222222111   11 1122233455


Q ss_pred             HHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceee
Q 018042          309 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  356 (361)
Q Consensus       309 ~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~  356 (361)
                      .+.++++ .|.|..+++.......++++++.++.++  +.||++||++.
T Consensus       228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~--l~dr~~~~~~~  274 (390)
T PRK03545        228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSR--LGNRHPSGFLL  274 (390)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH--HhhccchhHHH
Confidence            5666654 6999999999999999999999999999  69999987653

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=9.6e-28  Score=221.71  Aligned_cols=308  Identities=12%  Similarity=0.059  Sum_probs=217.0

Q ss_pred             chHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchh----hhhcccccccccccccCCchhHHHHHHHHHHHHH
Q 018042           21 ITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPE----VHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGL   96 (361)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   96 (361)
                      ..+.++.+..++.++..+...|....+.+.  +...++-.++    .....+....-..|++++..+.|.+.+.+.+++.
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~   90 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQI   90 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHH
Confidence            344455666666666666666776665542  1111100000    0000000111233789999999999999999999


Q ss_pred             HHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhh
Q 018042           97 VASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINN  174 (361)
Q Consensus        97 ~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~  174 (361)
                      +++++.|+++||+|||+++..+.+++.+++++..++  .+++.+++.|++.|++.+...+....+++|++|+++|+++++
T Consensus        91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  170 (465)
T TIGR00894        91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG  170 (465)
T ss_pred             HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999999999998887554  567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-ccCChhHHHhhCCCHHHHHHHHHHhhCCcc
Q 018042          175 GFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTND  253 (361)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (361)
                      +...+..+|.+++++++..+.+..  .+||+.|++.+++.++..+.+++ .+|+|+..  ++.+++|. +..++      
T Consensus       171 ~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~-~~i~~------  239 (465)
T TIGR00894       171 MSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEK-KYINS------  239 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHH-HHHHh------
Confidence            999999999999999977665421  38999999988887777665544 66776421  11111111 11000      


Q ss_pred             hHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhh
Q 018042          254 VEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIEC  332 (361)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~  332 (361)
                             ..++++++.+.+.++++++++    +.++...+..++.....+.+..|+|.|+++ .|++..+++....+..+
T Consensus       240 -------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~  308 (465)
T TIGR00894       240 -------SLQGQKGSTRQSLPIKAIPKS----LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL  308 (465)
T ss_pred             -------hcccccCCCCCCCCHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence                   000000011123345665544    444445555666666677888899999864 59999999999999999


Q ss_pred             cccccccchhhHHHHhhhccce
Q 018042          333 GGSIGFGRNMWVKWMNRVRWRK  354 (361)
Q Consensus       333 ~~~~g~~~~~~~~l~dr~grr~  354 (361)
                      +.+++.++.|+  ++||.++|+
T Consensus       309 ~~~i~~~~~g~--l~d~~~~~~  328 (465)
T TIGR00894       309 FAWLCSIFAGY--LADFLKSSK  328 (465)
T ss_pred             HHHHHHHHHHH--HHHHHHHcC
Confidence            99999999999  699987654

>TIGR00895 2A0115 benzoate transport

Probab=99.95  E-value=6.6e-28  Score=218.34  Aligned_cols=301  Identities=22%  Similarity=0.281  Sum_probs=212.4

Q ss_pred             HHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHH
Q 018042           26 ILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV  105 (361)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  105 (361)
                      +.....+.+..+..+++....+..                    .|.+.+++|.+..+.+++.+...++..++.++.|++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l   75 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFA--------------------APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPL   75 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--------------------HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            334444444556666665554443                    455577789999999999999999999999999999


Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHH
Q 018042          106 TRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGAL  185 (361)
Q Consensus       106 ~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~  185 (361)
                      +||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..
T Consensus        76 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  155 (398)
T TIGR00895        76 ADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAA  155 (398)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHH-hcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 018042          186 AANFINYGTEQIKGGWGWRVSLALAAVPASILTL-GALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKA  264 (361)
Q Consensus       186 ~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (361)
                      +++.++..+..   +.+||+.+++.++...+..+ ...++||++++..++ + .+++.+..++.......+.+ ++..++
T Consensus       156 ~~~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~  229 (398)
T TIGR00895       156 VGGFLAGWLIP---VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-R-PETVRRIVNAIAPQMQAEAQ-SALPEQ  229 (398)
T ss_pred             HHHHHHHHHhh---cccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-C-HHHHHHHHHHHHHhcccccc-cccccc
Confidence            99999766553   35899999887655554444 345689987765443 2 22222222221111100000 000000


Q ss_pred             HhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhH
Q 018042          265 SSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWV  344 (361)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~  344 (361)
                      .++++..+...+..++.+..++.. ...+..+...........+.|++.++.|.+..+.+.......++.+++.++.++ 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-  307 (398)
T TIGR00895       230 KATQGTKRSVFKALFQGKTARITV-LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW-  307 (398)
T ss_pred             ccccchhhHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            000000111122233332222222 223333344445566778889777888999999999999999999999999999 


Q ss_pred             HHHhhhcccee
Q 018042          345 KWMNRVRWRKL  355 (361)
Q Consensus       345 ~l~dr~grr~~  355 (361)
                       ++||++||+.
T Consensus       308 -l~~~~~~~~~  317 (398)
T TIGR00895       308 -LADRLGPRVT  317 (398)
T ss_pred             -HHhhcchHHH
Confidence             6999999844

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.95  E-value=5.2e-27  Score=208.92  Aligned_cols=239  Identities=15%  Similarity=0.072  Sum_probs=175.7

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||++++.+......+.+.....++++.++++|++.|++.
T Consensus        14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~   93 (368)
T TIGR00903        14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQ   93 (368)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHh
Confidence            56778899999999999999999999999999999999999999876665555444433333379999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +. .......++|++|+++|++++++.+.+..+|.+++++++..+..   +.+||+.|++.+++.++..+.. +++||+|
T Consensus        94 ~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903        94 PF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            86 45666667999999999999999999999999999999887764   3589999999777776665544 5589987


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      ++..   +..+              .+    +      .    .++++++++++    .++...+.+++.....+.+..|
T Consensus       170 ~~~~---~~~~--------------~~----~------~----~~~~~~ll~~~----~~~~~~~~~~~~~~~~~~~~~w  214 (368)
T TIGR00903       170 FQAA---EGFG--------------FK----D------A----VKEFGALAGRK----DLWIIGAILGFGVALFDNLAIW  214 (368)
T ss_pred             CCCC---CCcc--------------hH----H------H----HHHHHHHHcCh----hHHHHHHHHHHHHHHHHHHHHH
Confidence            5321   0000              00    0      0    01245566553    3344445566666667788999


Q ss_pred             HHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccc
Q 018042          309 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  353 (361)
Q Consensus       309 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr  353 (361)
                      +|.++++.|++.. .+.......+.++++   .++  ++||..||
T Consensus       215 lp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~--~~d~~~r~  253 (368)
T TIGR00903       215 LEAALRPAGLEDI-AGDAVALAILAGLIG---VAV--IPDRVARA  253 (368)
T ss_pred             HHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHH--hhHHhhhh
Confidence            9999988888764 555555555555544   355  47777553

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.95  E-value=7.9e-27  Score=210.67  Aligned_cols=244  Identities=15%  Similarity=0.109  Sum_probs=188.5

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+++|+|+|.++.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|++.|++.
T Consensus        32 lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~  111 (393)
T PRK09705         32 LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGI  111 (393)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHH
Confidence            67778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc-cCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-PETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-~es~  228 (361)
                      +...+....++.|++| ++|+++++.+..+..+|..+++.++..+....  .+||+.+.+.++..++..+..++. ++.|
T Consensus       112 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (393)
T PRK09705        112 GIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREV  188 (393)
T ss_pred             HHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999997 78999999999988889888888876655432  279998876555544333322222 1111


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +      +   +                         +++   +...++.+++   ++.+ ...+.++.....+.....|
T Consensus       189 ~------~---~-------------------------~~~---~~~~~~~l~~---~~~~-~l~~~~~~~~~~~~~~~~~  227 (393)
T PRK09705        189 A------S---S-------------------------HKT---TTTPVRVVFT---PRAW-TLGVYFGLINGGYASLIAW  227 (393)
T ss_pred             c------c---c-------------------------cCC---CcCCcccccC---HhHH-HHHHHHHHHHHHHHHHHHH
Confidence            0      0   0                         000   0011122222   1222 2222333334455677888


Q ss_pred             HHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          309 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       309 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .|.++++.|.+..+++.....+.++.++|.++.++  +.||.+||+....+
T Consensus       228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~--l~~r~~~~~~~~~~  276 (393)
T PRK09705        228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPA--MARHQDRRKLLMLA  276 (393)
T ss_pred             HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHH--HHhhccchHHHHHH
Confidence            99999888999999999999999999999999999  69999998876543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=5.1e-29  Score=215.31  Aligned_cols=279  Identities=16%  Similarity=0.202  Sum_probs=212.7

Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhh
Q 018042           23 AFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVA  102 (361)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (361)
                      ...++.+.++++..++...|...+..+                    .+++++.||++.+..|++.+.+.+.+++.+|+.
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv--------------------~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~   88 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGV--------------------LKEVQTYFNISDSELGLLQTVFIVVFMIASPLF   88 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhh--------------------hHHHHHhcCCCchhccchhHHHHHHHHHHHHHH
Confidence            345566777777888889999887666                    567788999999999999999999999999999


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHH
Q 018042          103 SSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI  182 (361)
Q Consensus       103 g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~  182 (361)
                      |+++|||+||+++.+|..++.++.+.++++..+|++.++|.+.|+|.+...+..+++++|.+|.++|++++++++.+..+
T Consensus        89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv  168 (493)
T KOG1330|consen   89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV  168 (493)
T ss_pred             HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHH
Q 018042          183 GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDL  261 (361)
Q Consensus       183 g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (361)
                      |..+|.+++..+.....  .|||.|+..++++++..++. ++.+|++|-     . .+|.+.       ++..       
T Consensus       169 GsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a-~~~~~~-------~~~~-------  226 (493)
T KOG1330|consen  169 GSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPERG-----A-RDEVDG-------ENKM-------  226 (493)
T ss_pred             ccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcccc-----c-cccccc-------CCcC-------
Confidence            99999999988887765  49999999999999888776 557776531     1 111000       0000       


Q ss_pred             HHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH----hcCCCChhhHHHhhhhhhccccc
Q 018042          262 LKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR----TIGLGRLKVCQLSKWIECGGSIG  337 (361)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~s~~~~~~~~~~~~~~~~~g  337 (361)
                         ........++.+...+.+.    .....+.+.........+..|.|.+..    -.|++.....++..+...++.+|
T Consensus       227 ---~~~~ts~~kDl~~l~~~~v----~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lG  299 (493)
T KOG1330|consen  227 ---VKPFTSVWKDLKVLAKIKV----FVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLG  299 (493)
T ss_pred             ---CCCccchHHHHHHHHccCc----eeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhh
Confidence               0000011112222222221    111112222222223445566665542    33888889999999999999999


Q ss_pred             ccchhhHHHHhhhcc
Q 018042          338 FGRNMWVKWMNRVRW  352 (361)
Q Consensus       338 ~~~~~~~~l~dr~gr  352 (361)
                      .+.+|.  ++||+-|
T Consensus       300 vl~Ggi--isd~~~~  312 (493)
T KOG1330|consen  300 VLFGGI--ISDKLSR  312 (493)
T ss_pred             heehHH--HHHHHHH
Confidence            999999  5998654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.95  E-value=1.2e-26  Score=209.36  Aligned_cols=238  Identities=16%  Similarity=0.162  Sum_probs=184.2

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|++.+++|++.++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.++++|++.|++.
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  122 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL  122 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~  228 (361)
                      +...+....++.|++|+++|++++++...+.++|..++|+++..+.+.   .+||+.|++.+++.++..+... ..||+|
T Consensus       123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999999999999999999999998877643   4899999988776665544433 366653


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +.    ++   +                              ..++.++.++++.   .+. ..+..+...........+
T Consensus       200 ~~----~~---~------------------------------~~~~~~~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~  238 (394)
T PRK10213        200 GE----PS---H------------------------------QKQNTFRLLQRPG---VMA-GMIAIFMSFAGQFAFFTY  238 (394)
T ss_pred             cc----cc---c------------------------------chhHHHHHhcCHH---HHH-HHHHHHHHHHHHHHHHHH
Confidence            10    00   0                              0001223333322   221 112222222222333344


Q ss_pred             -HHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccc
Q 018042          309 -APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  353 (361)
Q Consensus       309 -~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr  353 (361)
                       .|.+.++.|++..+.+.......++++++.++.++  +.||.+++
T Consensus       239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~--l~~r~~~~  282 (394)
T PRK10213        239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSF--ILKRSVKL  282 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH--HHhccchh
Confidence             47777778999999999888889999999998888  58885444

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.95  E-value=3.3e-26  Score=213.41  Aligned_cols=311  Identities=15%  Similarity=0.179  Sum_probs=212.5

Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhh
Q 018042           23 AFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVA  102 (361)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (361)
                      ++.+.....+.++.+.++++....+..                    .|.+.+++|++..+.+++.+.+.++..+++++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~   75 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLV--------------------LTEVQGEFGLTTVQAASLISAAFISRWFGGLLL   75 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666667777888887766544                    455677889999999999999999999999999


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHH
Q 018042          103 SSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI  182 (361)
Q Consensus       103 g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~  182 (361)
                      |+++||+|||++++.+.++..+++++.+++++++.+++.|++.|++.+..++....++.|++|+++|++++++...+..+
T Consensus        76 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  155 (496)
T PRK03893         76 GAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI  155 (496)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHH-HH
Q 018042          183 GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFD-DL  261 (361)
Q Consensus       183 g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  261 (361)
                      |..+++.+...+..   +.+||+.|++..+..++..+.....||++++..++++ +++.++..+.....+....... ..
T Consensus       156 g~~~~~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  231 (496)
T PRK03893        156 GAVVAAQVYSLVVP---VWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAG-KAPVRTMVDILYRGEHRIINILLTL  231 (496)
T ss_pred             HHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccc-cccchhHHHHHhcchhHHHHHHHHH
Confidence            99999999776654   4589999987655544443333457887654322211 1111111111100000000000 00


Q ss_pred             HH----HHhhhhhcccchh-------------hhc--ccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCCh
Q 018042          262 LK----ASSTAKTINHPFK-------------KII--QRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRL  321 (361)
Q Consensus       262 ~~----~~~~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~  321 (361)
                      ..    ...........+.             ...  ....+++.........+..+........++|.+++ +.|++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~  311 (496)
T PRK03893        232 AAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH  311 (496)
T ss_pred             HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence            00    0000000000000             000  01111222222222222222222345678899985 7799999


Q ss_pred             hhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          322 KVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       322 ~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +.+.+.....++.+++.++.++  ++||+|||+++..+
T Consensus       312 ~~g~~~~~~~~~~~~g~~~~g~--l~dr~g~~~~~~~~  347 (496)
T PRK03893        312 TVANVLFFSGFGAAVGCCVGGF--LGDWLGTRKAYVCS  347 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence            9999999999999999999999  69999999876543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.95  E-value=5.8e-27  Score=216.26  Aligned_cols=252  Identities=10%  Similarity=0.051  Sum_probs=179.4

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.+++++++.++++|++.|++.
T Consensus        59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  138 (476)
T PLN00028         59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL  138 (476)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc------cCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ------IKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      +.. .....+++|++|+++|++++++......+|..+++.+...+..      ..+..+||+.|++.+++.++..+..++
T Consensus       139 ~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        139 ATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             Hhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            764 4456789999999999999999887666666666554433221      111248999999988888776666555


Q ss_pred             cc-CChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcch
Q 018042          224 LP-ETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGI  302 (361)
Q Consensus       224 ~~-es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (361)
                      ++ +.|+.     + .++.++   +  .+              .++......+++.++++   +.+. ..+.++......
T Consensus       218 ~~~~~p~~-----~-~~~~~~---~--~~--------------~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~  268 (476)
T PLN00028        218 LGQDLPDG-----N-YRELKK---S--GT--------------MPKDSFSKVLRYGVTNY---RTWI-LALTYGYSFGVE  268 (476)
T ss_pred             HcCcCCCC-----c-hhhHHh---c--Cc--------------cccccHHHHHHHHHcCc---hhHH-HHHHHHHHHHHH
Confidence            44 33320     0 000000   0  00              00000011223333332   2222 222233333333


Q ss_pred             hhhHHcHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccc
Q 018042          303 NVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  353 (361)
Q Consensus       303 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr  353 (361)
                      ..+..+.|.++. +.|++..+++.+..+..++++++.++.|+  ++||++||
T Consensus       269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~--lsDr~~~r  318 (476)
T PLN00028        269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGY--LSDVAARR  318 (476)
T ss_pred             HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHh
Confidence            456667888875 45999999999999999999999999999  69999876

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.2e-26  Score=209.96  Aligned_cols=289  Identities=18%  Similarity=0.205  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHH
Q 018042           25 VILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASS  104 (361)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  104 (361)
                      .+.+...++...+....+...++...                   .-.+.+|.++...+.+.+.+++.++++++.++++.
T Consensus        43 dl~i~~~~~~~y~~~~~d~~si~~a~-------------------l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~  103 (495)
T KOG2533|consen   43 DLFILPFLCYLYFHAYLDKSSIVNAS-------------------LSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGL  103 (495)
T ss_pred             HHHHHHHHHHHHHHHhcchhcchhHH-------------------HcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHH
Confidence            44555555666666666666554432                   22356888899999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHH
Q 018042          105 VTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGA  184 (361)
Q Consensus       105 l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~  184 (361)
                      +.||++-.+.+....+++.+..++.+...|++.+++.|++.|+.++..+|....+++.|+.+++|+..++++.+..++|+
T Consensus       104 L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~  183 (495)
T KOG2533|consen  104 LGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN  183 (495)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence            99999999999999999999998888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccC---CCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHH
Q 018042          185 LAANFINYGTEQIK---GGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDD  260 (361)
Q Consensus       185 ~~~~~~~~~~~~~~---~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (361)
                      ++|++++..+..+.   ...||||.|++.++++++..+++ +++|+.|....-..  ++|.+-..++.+..+        
T Consensus       184 i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~--~~ek~~~~~~~~~~~--------  253 (495)
T KOG2533|consen  184 IFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT--DEEKELVVERLRESP--------  253 (495)
T ss_pred             HHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccc--hHHHHHHHHHHHhcc--------
Confidence            99999988864322   23599999999999999888777 45999986221000  111111111111000        


Q ss_pred             HHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhhccccccc
Q 018042          261 LLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFG  339 (361)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~  339 (361)
                        .....++.++.++++.+++    +.++...+..++.....+++.+|+|.++++ .|+|..++..+...+.++++++.+
T Consensus       254 --~~~~~~~~~~~~~~~a~~d----p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i  327 (495)
T KOG2533|consen  254 --SGGIENKFKWKGFKEALKD----PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLI  327 (495)
T ss_pred             --CCCcccccCHHHHHHHHhc----hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHH
Confidence              0000011223344555555    444556666677777778999999999987 579999999999999999999999


Q ss_pred             chhhHHHHhhh
Q 018042          340 RNMWVKWMNRV  350 (361)
Q Consensus       340 ~~~~~~l~dr~  350 (361)
                      +.++  ++||.
T Consensus       328 ~ag~--lsdr~  336 (495)
T KOG2533|consen  328 LAGY--LSDRL  336 (495)
T ss_pred             HHHH--HHHHH
Confidence            9999  69994

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.94  E-value=6.2e-27  Score=211.67  Aligned_cols=264  Identities=14%  Similarity=0.144  Sum_probs=198.8

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+++++|++..+.+++.+++.++..++.++.|+++||+|||+++..+.++..++.++.+++++++.++++|++.|++.
T Consensus        17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   96 (399)
T TIGR00893        17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE   96 (399)
T ss_pred             HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~  228 (361)
                      +...+....++.|++|+++|++.+++.+....+|.++++.++..+..   +.+||+.|++.+++.++..+..+ +.||+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (399)
T TIGR00893        97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI---HFSWQWAFIIEGVLGIIWGVLWLKFIPDPP  173 (399)
T ss_pred             HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence            99999999999999999999999999999999999999999776553   34799999988877776665553 466665


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +...  ..++++.+...++...+          .++.++++..+...++.+++    +.++...+..+...........+
T Consensus       174 ~~~~--~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  237 (399)
T TIGR00893       174 QKAK--WLTEEEKYIVVGGLLAE----------QQGKGPSTPKKYQIKELLKD----RRVWGLALGQFLVNIGLGFFLTW  237 (399)
T ss_pred             Cccc--cCCHHHHhhcchhhccc----------cccccccCCCccchHHHhcC----HHHHHHHHHHHHHHhHHHHHHHH
Confidence            3210  11011111100000000          00001111122234444443    22333344444445556677888


Q ss_pred             HHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccce
Q 018042          309 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK  354 (361)
Q Consensus       309 ~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~  354 (361)
                      .|.++++ .|.+..+.+.......++.+++.++.++  +.||++||+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~  282 (399)
T TIGR00893       238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGR--LSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHhhcc
Confidence            8888854 5899899999999999999999999999  699999986

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.94  E-value=5e-27  Score=211.01  Aligned_cols=250  Identities=13%  Similarity=0.080  Sum_probs=186.0

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+++++|++.++.+++.+++.++..+++++.|+++||+|||+++..+.++.++++++++++++++.++++|++.|++.
T Consensus        26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  105 (377)
T TIGR00890        26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV  105 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            55667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~  228 (361)
                      +..++.....+.|++| ++|+++.++...+..+|..+++++...+.   +..+||+.|++.+++.++..+..+ +++|+|
T Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       106 GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI---NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP  181 (377)
T ss_pred             HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence            9888888888999987 67999999999999999877655543333   235899999998888777666554 455543


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +... +++  +             +.              ++.+.+.++.++++..+....    ..+...........+
T Consensus       182 ~~~~-~~~--~-------------~~--------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  227 (377)
T TIGR00890       182 GQLI-KTN--I-------------EV--------------SVKDYTVWEMLRTPQFWVLYL----SFFLNAVSGLLLIGL  227 (377)
T ss_pred             hhcc-ccC--c-------------cc--------------chhhhhHHHHHcCccHHHHHH----HHHHHhHHHHHHHHH
Confidence            2100 000  0             00              000112233444432222221    222222222334445


Q ss_pred             HHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          309 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       309 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .+.+.++.|.+..+.+.......++.+++.++.++  +.||++||+.+..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~~~~~  276 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGA--LSDKIGRQKTMSIV  276 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhhHH
Confidence            56666778888888888889999999999999999  69999999876543

>PRK03699 putative transporter; Provisional

Probab=99.94  E-value=3e-26  Score=207.16  Aligned_cols=269  Identities=12%  Similarity=0.084  Sum_probs=201.6

Q ss_pred             HHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHH
Q 018042           27 LSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVT  106 (361)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  106 (361)
                      ...+.+.++.+..+.+....+..                    .|++.+++|+|.++.+++.+.+.+++.++.++.|++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~--------------------~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~   66 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMV--------------------MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLM   66 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh--------------------hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555667777776665555                    5667888899999999999999999999999999999


Q ss_pred             HhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHH
Q 018042          107 RAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALA  186 (361)
Q Consensus       107 d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~  186 (361)
                      ||+|||+++..+.++..++.++.+++++++.++++|++.|++.+...+....++.|++|+++|+++++..+....+|..+
T Consensus        67 dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  146 (394)
T PRK03699         67 EIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI  146 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999989889999999999999999999888888888888


Q ss_pred             HHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHh
Q 018042          187 ANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASS  266 (361)
Q Consensus       187 ~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (361)
                      +|.+...+..  +..+||+.|.+.+++.++..+..++ .+.|+.  ++++  +           +               
T Consensus       147 ~~~~~~~l~~--~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~--~-----------~---------------  193 (394)
T PRK03699        147 FPIIAAYLLA--RSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA--P-----------K---------------  193 (394)
T ss_pred             HHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC--c-----------c---------------
Confidence            8887654432  2248999999877776655444332 222210  0000  0           0               


Q ss_pred             hhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHH
Q 018042          267 TAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVK  345 (361)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~  345 (361)
                      ++   +...+    ...+ +.++...+..++.....+.+..|.|.+++ +.|+|..+++.+...+.++..+|.++.++  
T Consensus       194 ~~---~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~--  263 (394)
T PRK03699        194 AD---KPVAK----EKWG-IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSF--  263 (394)
T ss_pred             cc---Ccccc----ccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHH--
Confidence            00   00000    1111 22222333334444445677889999995 56999999999999999999999999999  


Q ss_pred             HHhhhccceeecc
Q 018042          346 WMNRVRWRKLDIY  358 (361)
Q Consensus       346 l~dr~grr~~~~~  358 (361)
                      ++||++||+.+..
T Consensus       264 l~dr~~~~~~l~~  276 (394)
T PRK03699        264 IVRFFDLQRILTV  276 (394)
T ss_pred             HHHHhchhhHHHH
Confidence            6999999987653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.94  E-value=2.9e-26  Score=206.38  Aligned_cols=243  Identities=14%  Similarity=0.127  Sum_probs=186.8

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+++|+|++.++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.
T Consensus        26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~  105 (382)
T PRK10091         26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPH  105 (382)
T ss_pred             hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence            55667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +...+....++.|++|+++|++++++...+..+|..++++++..+..   ..+||+.|++.++..++..+.. .++||.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        106 GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ---EFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99888888999999999999999999999999999999998776654   3489999999887766655544 4477753


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +    +.+ . +             .                 ++.+ +.++++   +.+... ...+...........+
T Consensus       183 ~----~~~-~-~-------------~-----------------~~~~-~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~  221 (382)
T PRK10091        183 D----EAK-G-G-------------L-----------------REQF-HFLRSP---APWLIF-AATMFGNAGVFAWFSY  221 (382)
T ss_pred             c----ccc-c-C-------------H-----------------HHHH-HHhcCh---HHHHHH-HHHHHHHHHHHHHHHH
Confidence            1    000 0 0             0                 0001 112221   111111 1111211222233344


Q ss_pred             HHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          309 APLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       309 ~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      .+.+++ ..|+++.+.+.+.....++.+++.++.++  +.||+++|+++..
T Consensus       222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~--l~~r~~~~~~~~~  270 (382)
T PRK10091        222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGR--LSGRYSPLRIAAV  270 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHhe--eccccCchhHHHH
Confidence            455554 56999999999999999999999999999  6999999887654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.94  E-value=4.1e-26  Score=207.30  Aligned_cols=281  Identities=13%  Similarity=0.077  Sum_probs=206.6

Q ss_pred             CcchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHH
Q 018042           19 GKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVA   98 (361)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   98 (361)
                      .+.++..++..+.+.+..+...++...+.+.                    .|.+.+++|.+..+.++..+.+.++..++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~   64 (406)
T PRK15402          5 ARLGRQALLFPLCLVLFEFATYIANDMIQPG--------------------MLAVVEDFNAGAEWVPTSMTAYLAGGMFL   64 (406)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhhHhcc--------------------hHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            3445666777777777777767766665544                    44557778999999999999999999999


Q ss_pred             HHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHH
Q 018042           99 SFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQF  178 (361)
Q Consensus        99 ~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~  178 (361)
                      +++.|+++||+|||++++.+.++..+++++..++++++.+++.|++.|++.+...+....++.|.+|+++|.+..++...
T Consensus        65 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  144 (406)
T PRK15402         65 QWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMAN  144 (406)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888899999999999999999998888


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHH
Q 018042          179 SIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAE  257 (361)
Q Consensus       179 ~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (361)
                      ...+|..++|.++..+.+   +.+||+.+++.++..++..+.. +..||+++..   ++ ++             +    
T Consensus       145 ~~~~~~~~g~~i~~~l~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-------------~----  200 (406)
T PRK15402        145 VALLAPLLGPLVGAALIH---VLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-KL-------------S----  200 (406)
T ss_pred             HHHHHHHHHHHHHHHHHH---ccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-cc-------------c----
Confidence            888888999998776654   3489999998887777665544 3467764210   00 00             0    


Q ss_pred             HHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHHHhhhhhhcccc
Q 018042          258 FDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSI  336 (361)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~  336 (361)
                      .+          +..+++++.++++....    ..+..+...........+.|.++. ..|+++.+.+.......++.++
T Consensus       201 ~~----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~  266 (406)
T PRK15402        201 LK----------ELGRDYKLVLKNRRFVA----GALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIA  266 (406)
T ss_pred             HH----------HHHHHHHHHHcCcHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            00          00112344444432222    112222121222334455677764 5699988888877777778888


Q ss_pred             cccchhhHHHHhhhccceeeccc
Q 018042          337 GFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       337 g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      |.++.++  +.||+++|+.+..+
T Consensus       267 g~~~~g~--l~~r~~~~~~~~~~  287 (406)
T PRK15402        267 GNLTLAR--LTSRRPLRSLIRMG  287 (406)
T ss_pred             HHHHHHH--HHHhcCHHHHHHHH
Confidence            9999998  69999998876543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.94  E-value=5.2e-26  Score=209.10  Aligned_cols=258  Identities=16%  Similarity=0.079  Sum_probs=181.0

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV----NVYMLIFGRLLL  145 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~  145 (361)
                      .|.+.++ |++..+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+..++++    +++.+++.|++.
T Consensus        52 ~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~  130 (452)
T PRK11273         52 MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC  130 (452)
T ss_pred             hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence            3445666 88999999999999999999999999999999999999999999999998887753    778889999999


Q ss_pred             HhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHH-HHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHh-ccc
Q 018042          146 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGAL-AANFINYGTEQIKGGWGWRVSLALAAVPASILTLG-ALF  223 (361)
Q Consensus       146 G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~  223 (361)
                      |++.+...+.....+.|++|+++|++++++++.+..+|.. .+++++......   .+||+.|++.+++.++..+. .++
T Consensus       131 gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~  207 (452)
T PRK11273        131 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALFAFAM  207 (452)
T ss_pred             HHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888899999999999999999999988864 455543322221   38999999987776665444 456


Q ss_pred             ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcc-cCchhHHHHHHHHHHHHHhcch
Q 018042          224 LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQ-RKYRPQLLMAMAIPFFQQVTGI  302 (361)
Q Consensus       224 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  302 (361)
                      +||+|+....+ + +++.++   +   .++          ..+++++.+.+.++.++ ...+.+.++...+..++.....
T Consensus       208 ~~~~~~~~~~~-~-~~~~~~---~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  269 (452)
T PRK11273        208 MRDTPQSCGLP-P-IEEYKN---D---YPD----------DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR  269 (452)
T ss_pred             ccCCHhhcCCC-C-hhhhhh---c---ccc----------ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            78887542111 0 111000   0   000          00000000111222111 1111233333333333333344


Q ss_pred             hhhHHcHHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhc
Q 018042          303 NVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVR  351 (361)
Q Consensus       303 ~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~g  351 (361)
                      +....|.|.++++ .|++..+++.+.....++.+++.++.|+  ++||++
T Consensus       270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~--l~dr~~  317 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW--MSDKVF  317 (452)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHc
Confidence            6678899999976 5899889888888888999999999999  699994

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.94  E-value=7.8e-27  Score=217.03  Aligned_cols=299  Identities=14%  Similarity=0.098  Sum_probs=212.7

Q ss_pred             HHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 018042           29 CMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA  108 (361)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  108 (361)
                      ...++++.+...++....+..                    .|.+.+++|.+.++.+++.+.+.++..++.++.|+++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~--------------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr   63 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVA--------------------IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR   63 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence            344555667777777766555                    566788889999999999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHH
Q 018042          109 FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAAN  188 (361)
Q Consensus       109 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~  188 (361)
                      +|||++++.+.++..++.+++++++|++.++++|++.|++.+...+....++.|++|+++|+++++++..+..+|..+++
T Consensus        64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  143 (485)
T TIGR00711        64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP  143 (485)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHH------------HHHhhCCc--c
Q 018042          189 FINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLM------------LQRVRGTN--D  253 (361)
Q Consensus       189 ~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~------------~~~~~~~~--~  253 (361)
                      .+++.+.+   +.+||+.|++.+.+.++..+.. ++.||+++.   ++++.+.....            ..+-....  +
T Consensus       144 ~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~  217 (485)
T TIGR00711       144 TLGGWIIE---NYHWRWIFLINVPIGIIVVVVAFFILPRDKPA---ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFD  217 (485)
T ss_pred             ccHhHhcc---CcCceehhhhhhHHHHHHHHHHHHHcCCcccc---ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            99776654   4589999998877766665544 346664321   11101111000            00000000  0


Q ss_pred             hHHHHHHH---------HHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhh
Q 018042          254 VEAEFDDL---------LKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKV  323 (361)
Q Consensus       254 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~  323 (361)
                      ........         ....+..++.+....+.++++......    +..+..........++.|.++++ .|.++.++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~  293 (485)
T TIGR00711       218 SNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGC----VYMSLLGLGLYGSFYLLPLYLQQVLGYTALQA  293 (485)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            00000000         000001111111112344443332222    22222233345667788988875 59999999


Q ss_pred             HHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          324 CQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       324 ~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +.......++.+++.++.++  +.||+|||+++..+
T Consensus       294 g~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~~~~g  327 (485)
T TIGR00711       294 GLHILPVGLAPMLSSPIAGR--MGDKIDPRKLVTIG  327 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHhhcCcHHHHHHH
Confidence            99999999999999999999  69999999876544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=8.5e-26  Score=204.13  Aligned_cols=256  Identities=16%  Similarity=0.194  Sum_probs=211.9

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~  151 (361)
                      +.+++++.++.+++.+.++.|+.+++++.|++.||+|-|+++..+.++.++++++...+.  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            568999999999999999999999999999999999999999999999999999998875  445778899999999999


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCChhH
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETPNS  230 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~~~  230 (361)
                      .++....+.+.|.|++||++..++...+..+|.+++-++++.+.+.  ..||++.|++.++++++..++++ +..|+|..
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            9999999999999999999999999999999999998887777754  35999999999999999888774 46777753


Q ss_pred             HHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHH
Q 018042          231 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  310 (361)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (361)
                      .  +.-+++|.+...+..              .+.+.+++.+.++++++++    +.++...+..++...+++.+..|+|
T Consensus       223 h--~~is~~El~~I~~~k--------------~~~~~~~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~y~P  282 (466)
T KOG2532|consen  223 H--PNISEKELKYIEKGK--------------SEAHVKKKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLTYLP  282 (466)
T ss_pred             C--CCCCHHHHHHHHhcc--------------cccccCCCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1  111122221111110              0011111136688998887    6666777788888888999999999


Q ss_pred             HHHHhc-CCCChhhHHHhhhhhhcccccccchhhHHHHhhhccc
Q 018042          311 LLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  353 (361)
Q Consensus       311 ~~~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr  353 (361)
                      .|+++. |++..+.+++.++..+...+..+++|.  ++||..+|
T Consensus       283 tY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~--lsD~l~~~  324 (466)
T KOG2532|consen  283 TYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQ--LSDRLTFR  324 (466)
T ss_pred             HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhc
Confidence            999765 999999999999999999999999999  69998775

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.94  E-value=9.7e-26  Score=202.44  Aligned_cols=239  Identities=13%  Similarity=0.047  Sum_probs=175.7

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~  149 (361)
                      +++|+|.+|.+++.++..+++.++.++.|++.||+|.|+++.++.+++.+.++..+++     ++++.+++.|++.|++ 
T Consensus        63 ~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-  141 (462)
T PRK15034         63 IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-  141 (462)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-
Confidence            3789999999999999999999999999999999999999999999999999999987     8999999999999998 


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc-----c----------cCCCcchHHHHHhhHHHH
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE-----Q----------IKGGWGWRVSLALAAVPA  214 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~-----~----------~~~~~~wr~~~~~~~~~~  214 (361)
                      +..++.....+++|+|+++||+++++.....++|..+++++...+.     .          ..+..+||...++.+++.
T Consensus       142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~  221 (462)
T PRK15034        142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL  221 (462)
T ss_pred             HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            7788999999999999999999999996666666654444432211     0          011346888888877777


Q ss_pred             HHHHHhccc-ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHH
Q 018042          215 SILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAI  293 (361)
Q Consensus       215 ~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (361)
                      ++..+..++ .++.|.    ++                                  ...++..+.+|++.    .+...+
T Consensus       222 iv~~i~~~~~~~~~~~----~~----------------------------------~~~~~~~~vlk~~~----~Wllsl  259 (462)
T PRK15034        222 AIATIAAWSGMNDIAS----SR----------------------------------ASIADQLPVLQRLH----LWLLSL  259 (462)
T ss_pred             HHHHHHHHHhCCCccc----cc----------------------------------cCHHHHHHHhCCCc----hhHHHH
Confidence            666665555 333221    00                                  00112334445533    233444


Q ss_pred             HHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          294 PFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .+++.+.++..+.+++|++.++ .++.........+..+...++.+++|+  ++||+|+|+++.++
T Consensus       260 ly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~--LADRiG~~~vl~~~  322 (462)
T PRK15034        260 LYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGA--ISDKFGGVRVTLIN  322 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHH--HHHhcCchHHHHHH
Confidence            5566666777888899999865 344333333344456677788899999  69999999877654

>PRK10133 L-fucose transporter; Provisional

Probab=99.94  E-value=1.2e-25  Score=205.07  Aligned_cols=252  Identities=12%  Similarity=0.089  Sum_probs=180.3

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAAVNVYMLIFGRLLLG  146 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G  146 (361)
                      .|++++++|++..+.++..+.+.+++.+++++.|++.||+|||+++..+.+++.++++++   ..+++++.++++|++.|
T Consensus        49 ~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G  128 (438)
T PRK10133         49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA  128 (438)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            566788889999999999999999999999999999999999999999999999999875   46889999999999999


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc-cC-------------CC---------cch
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ-IK-------------GG---------WGW  203 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-------------~~---------~~w  203 (361)
                      +|.+...+....++.|+.|+++|...++..+....+|..+++.++..+.. ..             ++         .+|
T Consensus       129 ~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w  208 (438)
T PRK10133        129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSV  208 (438)
T ss_pred             HHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHH
Confidence            99999999999999998877777778999999999999999988764431 10             00         256


Q ss_pred             HHHHHhhH-HHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhccc
Q 018042          204 RVSLALAA-VPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQR  281 (361)
Q Consensus       204 r~~~~~~~-~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (361)
                      |+.|+... +..++..+.. ...||.+.    +++ .+                          +++....++.++++++
T Consensus       209 ~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~-~~--------------------------~~~~~~~~~~~~ll~~  257 (438)
T PRK10133        209 QTPYMIIVAIVLLVALLIMLTKFPALQS----DNH-SD--------------------------AKQGSFSASLSRLARI  257 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc-cc--------------------------ccccchhhhHHHHHhC
Confidence            66665433 3332322222 22454221    000 00                          0000001123445554


Q ss_pred             CchhHHHHHHHHHHHHHhcchhhhHHcHHHHH-H-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          282 KYRPQLLMAMAIPFFQQVTGINVIAFYAPLLF-R-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      +..+...+.    .++..........|.+.++ + ..|.++.+++.....+.++.++|++++++  +.||+|+|+++..
T Consensus       258 ~~~~~~~l~----~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~--l~~r~g~~~~l~~  330 (438)
T PRK10133        258 RHWRWAVLA----QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW--LISRFAPHKVLAA  330 (438)
T ss_pred             chHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCHHHHHHH
Confidence            433322222    2222233344555677664 4 45999999999999999999999999999  6999999987644

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.94  E-value=5.3e-26  Score=205.16  Aligned_cols=248  Identities=13%  Similarity=0.108  Sum_probs=192.2

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+.+++|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.
T Consensus        28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  107 (385)
T TIGR00710        28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGA  107 (385)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcch
Confidence            45567778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +...+....++.|++|+++|+++.++.+....+|..+++.++..+.+.   .+||+.+++.++..++..+.. ++.||++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       108 SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999998766543   479999988777766665544 4467754


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +..    + ++             +.+              +..+.+++.++++..+....    ..............+
T Consensus       185 ~~~----~-~~-------------~~~--------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  228 (385)
T TIGR00710       185 PYE----A-RI-------------QIS--------------TYFETFLLLLKSKMFWGYAL----IYGASFGGFFAFFSG  228 (385)
T ss_pred             CCc----c-cC-------------CHH--------------HHHHHHHHHHcCchhHHHHH----HHHHHHHHHHHHHHc
Confidence            210    0 00             000              00112333444432222221    122222233455667


Q ss_pred             HHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          309 APLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       309 ~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      .|.+++ +.|.++.+.+.+.....++.+++.++.++  +.||+++|+.+..
T Consensus       229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~~~~  277 (385)
T TIGR00710       229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGR--FIKKWGAKSLLRM  277 (385)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHH
Confidence            787775 67999999999999999999999999999  6999999876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.93  E-value=2.7e-26  Score=206.37  Aligned_cols=261  Identities=16%  Similarity=0.159  Sum_probs=189.7

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+.+++|++.++.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.
T Consensus        18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   97 (379)
T TIGR00881        18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQ   97 (379)
T ss_pred             hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHH-HHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCC
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAAN-FINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPET  227 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es  227 (361)
                      +...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+..   ..+||+.|++.+++.++..+.. ++.||+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881        98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWHWVFIVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence            999999999999999999999999999999999999998 45544433   3489999988877766654444 557776


Q ss_pred             hhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHH
Q 018042          228 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  307 (361)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (361)
                      |+....++.  ++.+      ..+.+.++     ++++++.+..+...++.++++    .++...+..+...........
T Consensus       175 ~~~~~~~~~--~~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  237 (379)
T TIGR00881       175 PQSCGLPPA--EEMP------NEEPDGDA-----EKKEEELTKKQIFLQYVLLNK----VLWYISLGYVFVYVVRTGILD  237 (379)
T ss_pred             ccccccCcc--ccCc------cccccccc-----ccccccccchHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHH
Confidence            542111100  0000      00000000     000000001111233333332    222233333333344456777


Q ss_pred             cHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhcc
Q 018042          308 YAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRW  352 (361)
Q Consensus       308 ~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~gr  352 (361)
                      +.|.+++ ..|++..+.+.......++.+++.++.++  +.||..+
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~r~~~  281 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGW--LSDKLFN  281 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHH--HHHHHcC
Confidence            8888885 45999999999999999999999999999  6998643

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.93  E-value=1.6e-25  Score=200.64  Aligned_cols=257  Identities=14%  Similarity=0.122  Sum_probs=180.5

Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHhhhhh
Q 018042           73 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~  151 (361)
                      +++++|++..+.+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.+++++++ +++.+++.|++.|++.+.
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~  107 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS  107 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh
Confidence            6788899999999999999999999999999999999999999999999999999999999 999999999999998654


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhccc-------CCCcchHHHH-HhhHHHHHHHHHh-cc
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI-------KGGWGWRVSL-ALAAVPASILTLG-AL  222 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~wr~~~-~~~~~~~~~~~~~-~~  222 (361)
                       .+....+++|++|+++|++++++......+|..+++.++..+...       .++.+||+.+ +..++...+..+. ..
T Consensus       108 -~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  186 (366)
T TIGR00886       108 -FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFF  186 (366)
T ss_pred             -hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHH
Confidence             566788999999999999999998877777776666665443321       1234799998 4434444443333 34


Q ss_pred             cccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcch
Q 018042          223 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGI  302 (361)
Q Consensus       223 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (361)
                      +.+|+|+..   ++ +++.+.     ..... .           .+++...+.++.++++..+    ...+..+......
T Consensus       187 ~~~~~~~~~---~~-~~~~~~-----~~~~~-~-----------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  241 (366)
T TIGR00886       187 VGADTPPGK---PA-TGKLSF-----KGARW-S-----------VGTGALGDQLKVFRDRHTW----ILALLYSVTFGSF  241 (366)
T ss_pred             hcccCCccc---cc-chhccc-----ccccc-c-----------ccchhHHHHHHHHhccchh----hHHHHHHHHHHHH
Confidence            466665311   00 000000     00000 0           0000001233344433222    2222233333344


Q ss_pred             hhhHHcHHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          303 NVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       303 ~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      .....+.|.++++ .|+++.+++.+.....+.++++.++.++  ++||+|||+.+.
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~  295 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGA--ISDRLGGARKLL  295 (366)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccch--HHHhhccchhHH
Confidence            5667788888864 5999999998888888899999999999  699999987654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.93  E-value=3.9e-25  Score=200.66  Aligned_cols=236  Identities=13%  Similarity=0.156  Sum_probs=182.0

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|++.+++|.+.++.++..+++.+++.+++++.|+++||+|||++++.+.+++++++++++++++++.++++|+++|++.
T Consensus        39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~  118 (413)
T PRK15403         39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSI  118 (413)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            56678888999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +...+....++.|++|+++|++++++......+|..++|+++..+.+.   .+||+.|++.++..++..+.. +++||++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        119 CFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            877777788899999999999999999999999999999998776643   489999999888777666544 4578875


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +.   +++ ..             +.              +...+++++.+++    +.++...+..+...........+
T Consensus       196 ~~---~~~-~~-------------~~--------------~~~~~~~~~ll~~----~~~~~~~l~~~~~~~~~~~~~~~  240 (413)
T PRK15403        196 KR---GAV-PF-------------SA--------------KSVLRDFRNVFRN----RLFLTGAATLSLSYIPMMSWVAV  240 (413)
T ss_pred             cc---cCC-CC-------------Ch--------------HHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHh
Confidence            31   000 00             00              0001133444444    22322333333333444556667


Q ss_pred             HHHHHHhc-CCCChhhHHHhhhhhhcccccccchhh
Q 018042          309 APLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMW  343 (361)
Q Consensus       309 ~~~~~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~~~  343 (361)
                      .|.++++. |.+..+.++.......+.+++..+.+.
T Consensus       241 ~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~  276 (413)
T PRK15403        241 SPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVAR  276 (413)
T ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888665 899999998887777777777666666

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=2e-25  Score=186.94  Aligned_cols=309  Identities=18%  Similarity=0.152  Sum_probs=230.0

Q ss_pred             hHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHh
Q 018042           22 TAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFV  101 (361)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (361)
                      .+.+|...+....++.-+....-..+.+                    .|.+++.+|.+..+..++....+.|..+++..
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i--------------------~~~l~~~w~~s~~q~~llt~~v~~gmllga~~  132 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLI--------------------LPALDEVWGPSEGQAPLLTLSVFLGMLVGAMV  132 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHH--------------------HHHHHhhhchhhhhhhHHHHHHHhhhhhhhhh
Confidence            3556666666666655444433322222                    55667788889999999999999999999999


Q ss_pred             hHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHH
Q 018042          102 ASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIG  181 (361)
Q Consensus       102 ~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~  181 (361)
                      +|.++|++|||+.+.......++...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|.-|..+|...+-+. ..+.
T Consensus       133 w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~wa  210 (528)
T KOG0253|consen  133 WGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWA  210 (528)
T ss_pred             hheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHH
Confidence            99999999999999999999999999999999999999999999999998 888888899999999999877777 8999


Q ss_pred             HHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCCcch-------
Q 018042          182 IGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDV-------  254 (361)
Q Consensus       182 ~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  254 (361)
                      +|.+....++..+...   .||||.......+..+.+...+.+|||||+...+++ +++|...++++...|..       
T Consensus       211 ig~v~ea~law~vm~~---~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~-~~kAletL~kiArmNg~qlplgvl  286 (528)
T KOG0253|consen  211 IGQVFEALLAWGVMSN---FGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD-DYKALETLHKIARMNGKQLPLGVL  286 (528)
T ss_pred             HHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC-hHHHHHHHHHHHHhcCCCCCccee
Confidence            9999998887776643   489999988888877777777889999999999998 88888888887765521       


Q ss_pred             ------HHHHHHHHHH---HhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhc---CC----
Q 018042          255 ------EAEFDDLLKA---SSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI---GL----  318 (361)
Q Consensus       255 ------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~----  318 (361)
                            ++|.++.+.+   ....++.+.+..+++....|+..++...+.+...+. ++.........++..   +.    
T Consensus       287 ~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~  365 (528)
T KOG0253|consen  287 ESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRF  365 (528)
T ss_pred             eeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhc
Confidence                  1111111111   112233455677788888888877766665555444 334333333333321   11    


Q ss_pred             -------------CChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          319 -------------GRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       319 -------------s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                                   +......-..+..+..++|.++.++  ++||+|||+++..+
T Consensus       366 ~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~--iverlGRKkTMal~  417 (528)
T KOG0253|consen  366 LPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGV--IVERLGRKKTMALS  417 (528)
T ss_pred             chhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHH--HHHHhcchhHHHHH
Confidence                         1122222345567889999999999  59999999987544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.93  E-value=2.9e-26  Score=216.72  Aligned_cols=270  Identities=14%  Similarity=0.150  Sum_probs=194.9

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh----------------
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV----------------  133 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~----------------  133 (361)
                      .++++++|+++..+.|++.+.+.++++++.++.+++.||+|||+.+.+++++++++++++++.+                
T Consensus        56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~  135 (633)
T TIGR00805        56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG  135 (633)
T ss_pred             chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence            6788999999999999999999999999999999999999999999999999999999987753                


Q ss_pred             -----------------------------------hHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHH
Q 018042          134 -----------------------------------NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQF  178 (361)
Q Consensus       134 -----------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~  178 (361)
                                                         .+..++++|+++|+|.+..++...+++.|++|+++|+++++++..
T Consensus       136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~  215 (633)
T TIGR00805       136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES  215 (633)
T ss_pred             cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH
Confidence                                               245677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCC------------------c-chHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHH
Q 018042          179 SIGIGALAANFINYGTEQIKGG------------------W-GWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQ  239 (361)
Q Consensus       179 ~~~~g~~~~~~~~~~~~~~~~~------------------~-~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~  239 (361)
                      +..+|..+|+++++.+.+...+                  . .|+..|++.+++.++..+.++++|++.+....+.+ .+
T Consensus       216 ~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~-~~  294 (633)
T TIGR00805       216 IAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN-VD  294 (633)
T ss_pred             HHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc-hh
Confidence            9999999999998877653211                  0 37777888887777766656666654211000000 00


Q ss_pred             HHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCC
Q 018042          240 KAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGL  318 (361)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~  318 (361)
                      +.++  +......+..  ..   +..+..++.....+.++++    +.++...+..+.....++.+..|+|.|++ ..|+
T Consensus       295 ~~~~--~~~~~~~~~~--~~---~~~~~~~~~~~~~~~Ll~n----~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~  363 (633)
T TIGR00805       295 VHET--EKLEKSEDKS--RK---KNSDITKDFPKIIKRLLCN----PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGI  363 (633)
T ss_pred             hhhh--hccccccccc--ch---hhhhhHHHHHHHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            0000  0000000000  00   0000001112234445554    44555555555566667888899999997 4699


Q ss_pred             CChhhHHHhhhhhh-cccccccchhhHHHHhhhccc
Q 018042          319 GRLKVCQLSKWIEC-GGSIGFGRNMWVKWMNRVRWR  353 (361)
Q Consensus       319 s~~~~~~~~~~~~~-~~~~g~~~~~~~~l~dr~grr  353 (361)
                      ++.+++.+.....+ +.++|.+++|+  ++||++++
T Consensus       364 s~~~ag~l~~~~~i~~~~vG~~l~G~--l~~r~~~~  397 (633)
T TIGR00805       364 SSAEANFLIGVVNLPAAGLGYLIGGF--IMKKFKLN  397 (633)
T ss_pred             cHHHHHHHhhhhhhhHHHHHHhhhhh--eeeeeccc
Confidence            99999988877665 56789999999  69999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.93  E-value=8.5e-26  Score=201.19  Aligned_cols=251  Identities=21%  Similarity=0.309  Sum_probs=187.1

Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 018042           72 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      .+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++.+.++++|++.|++.+.
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  101 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF  101 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence            55788899999999999999999999999999999999999999999999999977766768888999999999999999


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhH
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNS  230 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~  230 (361)
                      ..+....++.|++|+++|++++++...+..+|.++++.++..+.+   +.+||+.|++.++..++..++. .+++++++.
T Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~  178 (352)
T PF07690_consen  102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---YFGWRWAFLISAILSLIAAILFILFLPEPPPP  178 (352)
T ss_dssp             HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred             ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---ccccccccccccchhhhhhhhHhhhhhhcccc
Confidence            999999999999999999999999999999999999999887663   3479999999988888876642 445444321


Q ss_pred             HHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhccc-chhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcH
Q 018042          231 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINH-PFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  309 (361)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (361)
                      ...+++++++                         +++++... .++..++++..+    ......+...........+.
T Consensus       179 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  229 (352)
T PF07690_consen  179 RERESPKESE-------------------------SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFL  229 (352)
T ss_dssp             TT--SSTTTT---------------------------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccc-------------------------cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhccc
Confidence            1111110000                         00011111 244444433222    12222222223345578888


Q ss_pred             HHHH-HhcCCC-ChhhHHHhhhhhhcccccccchhhHHHHhhhccceee
Q 018042          310 PLLF-RTIGLG-RLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  356 (361)
Q Consensus       310 ~~~~-~~~g~s-~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~  356 (361)
                      |.++ +..|.+ ..+.+.......+.++++.++.++  +.||+++|+..
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~  276 (352)
T PF07690_consen  230 PLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGR--LSDRFGRRRRL  276 (352)
T ss_dssp             HHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCHHHH
T ss_pred             chhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCcHHHH
Confidence            8884 566888 688888888889999999999999  69999986543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=1.5e-24  Score=203.09  Aligned_cols=268  Identities=18%  Similarity=0.159  Sum_probs=186.3

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +.++.+.....+..+++++|.++|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.+....
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            44566888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhh
Q 018042          155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR  234 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~  234 (361)
                      ....+++|++++++|+.+.++ ......+..+++..+.++..     +||+.+++..+++++.++..++.||+|||+..+
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK  264 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence            999999999999999999999 55555555555555554443     799999999999988877766677999999999


Q ss_pred             CCCHHHHHHHHHHhhCCc----chHHHHHHH-HHHHhh--hhhcccchhhhcccC-chhHHHHHHHHHHHHHhcchhhhH
Q 018042          235 KSDHQKAKLMLQRVRGTN----DVEAEFDDL-LKASST--AKTINHPFKKIIQRK-YRPQLLMAMAIPFFQQVTGINVIA  306 (361)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  306 (361)
                      ++ .+++.+..++..+.|    +.++..+.. ..+.+.  ..+.+..+.+.++.+ .+.+.+..... .+..    ....
T Consensus       265 g~-~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~~----~~~y  338 (521)
T KOG0255|consen  265 GR-IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFI-WFVF----SLVY  338 (521)
T ss_pred             Cc-hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHH-HHHH----hHHH
Confidence            98 677777777665432    121211111 111111  111224566676655 33333333222 2211    1111


Q ss_pred             HcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          307 FYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       307 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +-++......|.+....   ..........+....+.  ..|+.|||.....+
T Consensus       339 ~gl~~~~~~lg~~~~~~---~~~~~~~~~p~~~~~~~--~~~~~gR~~~~~~~  386 (521)
T KOG0255|consen  339 YGLSLNVSGLGGNIYLN---FTLSGLVELPAYFRNGL--LLPEFGRRPPLFLS  386 (521)
T ss_pred             HhhhhhhhhcCchHHHH---HHHHHHHHhhHHHHHHH--HHHHhCcHHHHHHH
Confidence            12222223333332222   22222244455555555  58999999876543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.93  E-value=9.8e-25  Score=196.36  Aligned_cols=251  Identities=16%  Similarity=0.151  Sum_probs=192.7

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+.+++|++.++.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|++.|++.
T Consensus        14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~   93 (377)
T PRK11102         14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAA   93 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +...+....++.|++|+++|++++++.+....+|..+++.++..+.+.   .+||+.|++.+++.++..+.. ++.||++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102         94 AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            999999999999999999999999999999999999999997766543   479999988877776665544 5577764


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +..   ++  +           +.+.++              ..+++++.++++..   + ...+..+....+......+
T Consensus       171 ~~~---~~--~-----------~~~~~~--------------~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~  216 (377)
T PRK11102        171 PKE---RR--Q-----------PFHLRT--------------TIRNFASLFRHKRV---L-GYMLASGFSFAGMFSFLTA  216 (377)
T ss_pred             ccc---cc--C-----------CCChHH--------------HHHHHHHHHcChHH---H-HHHHHHHHHHHHHHHHHHc
Confidence            210   00  0           000000              01123334444221   1 1222222333334455556


Q ss_pred             HHHHH-HhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          309 APLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       309 ~~~~~-~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .|.++ +..|+++.+.+.+.....++.+++.++.++  +.||+|||+.+..+
T Consensus       217 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~~  266 (377)
T PRK11102        217 GPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSR--FVRRVGALNMLRFG  266 (377)
T ss_pred             CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCHHHHHHHH
Confidence            66666 456999999999999999999999999999  69999999876543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.93  E-value=6.4e-25  Score=201.14  Aligned_cols=255  Identities=17%  Similarity=0.085  Sum_probs=180.6

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHhhhhhh
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA----VNVYMLIFGRLLLGVGVGFA  152 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~  152 (361)
                      +|++.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.+..    ++++.+.+.|++.|++.+..
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~  135 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG  135 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence            48899999999999999999999999999999999999999999999988887664    46777888899999999999


Q ss_pred             hhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHH
Q 018042          153 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSL  231 (361)
Q Consensus       153 ~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~  231 (361)
                      ++....++.|++|+++|++++++.+.+..+|..+++.+......  .+.+||+.|++.+++.++..+.. +++||+|+..
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  213 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA--WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSC  213 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhc
Confidence            99899999999999999999999999999999888776543222  12489999999888777655444 5578877532


Q ss_pred             HhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccch-hhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHH
Q 018042          232 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPF-KKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  310 (361)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (361)
                      ..++  .++.++   +.  ..+..       ++.+.+.+.++.+ +..++++    .++...+..++.....+....|.|
T Consensus       214 ~~~~--~~~~~~---~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p  275 (438)
T TIGR00712       214 GLPP--IEEYRN---DY--PDDYN-------EKAEQELTAKEIFMQYVLPNK----LLWYIAIANVFVYLLRYGVLDWSP  275 (438)
T ss_pred             CCCC--chhccc---cc--ccccc-------cccccccchHHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHHhHH
Confidence            1100  000000   00  00000       0000000000111 1233332    222222233333344456778999


Q ss_pred             HHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccc
Q 018042          311 LLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  353 (361)
Q Consensus       311 ~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr  353 (361)
                      .++++ .|+++.+++.......++++++.++.++  ++||++++
T Consensus       276 ~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~--l~dr~~~~  317 (438)
T TIGR00712       276 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW--MSDKVFKG  317 (438)
T ss_pred             HHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHH--HHHHhccC
Confidence            99976 5999999999999999999999999999  69999654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.92  E-value=1.9e-24  Score=195.54  Aligned_cols=248  Identities=17%  Similarity=0.149  Sum_probs=186.6

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+.+++|.+.++.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.++...+++++.++++|++.|++.
T Consensus        26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~  105 (392)
T PRK10473         26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGA  105 (392)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence            45567778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +...+....++.|++|+++|+++.++.+....+|..++|.++..+.+   ..+||+.+++.++..++..+.. +++||++
T Consensus       106 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        106 GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---KFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999998776553   3489999998877766665544 4567764


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +..  +++ +++                .              .+..++.++++..........+    ..........+
T Consensus       183 ~~~--~~~-~~~----------------~--------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  225 (392)
T PRK10473        183 PAR--APA-ASS----------------K--------------PRENSESLLNRFFLSRLVITTL----SVTVILTFVNT  225 (392)
T ss_pred             Ccc--cCC-ccc----------------h--------------HHHHHHHHhCHHHHHHHHHHHH----HHHHHHHHHHh
Confidence            210  000 000                0              0011122222211111111111    11112234455


Q ss_pred             HHHHH-HhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          309 APLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       309 ~~~~~-~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .|.++ ++.|++..+.+.......++.+++.++.++  +.||+|||+.+..+
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~--l~~r~g~~~~~~~~  275 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPF--ALGIFKPRTLMLTS  275 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHH
Confidence            56666 456999988888888889999999999999  69999999876544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=8.8e-25  Score=195.58  Aligned_cols=247  Identities=14%  Similarity=0.035  Sum_probs=184.2

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV-----NVYMLIFGRLLLGVGV  149 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~  149 (361)
                      .+++.+..+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++..+.+     +++.+++.|++.|++.
T Consensus        27 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  106 (365)
T TIGR00900        27 LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQ  106 (365)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            34467889999999999999999999999999999999999999999999888888887     9999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc--ccCC
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF--LPET  227 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~--~~es  227 (361)
                      +...+...+++.|++|+++|++.+++.+.+..+|.++++.++..+...   .+||+.|++.++..++..+..++  .||+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (365)
T TIGR00900       107 AFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIWVDAVGFAISALLIVSVRIPEL  183 (365)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            999999999999999999999999999999999999999998777643   47999998877766555444333  3333


Q ss_pred             hhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhH-
Q 018042          228 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA-  306 (361)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  306 (361)
                      ++.    ++  ++.+            ++..          ++.++.+++.++++..+.......   . ......... 
T Consensus       184 ~~~----~~--~~~~------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~  231 (365)
T TIGR00900       184 AAS----EI--QALS------------NAVL----------RDTREGIKFVLKNPLLRTLLLLAL---L-FNLVFAPAIV  231 (365)
T ss_pred             CCc----cc--cccc------------hhHH----------HHHHhHHHHHHcCcHHHHHHHHHH---H-HHHHHHHHHH
Confidence            210    00  0000            0000          000112344444433322222211   1 112222333 


Q ss_pred             HcHHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          307 FYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       307 ~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      .+.|.+.++ .|.+..+.+.......++.+++.++.++  +.||.+||+.+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~  282 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGL--LGRYFKRMALMTG  282 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHhchhHHHHH
Confidence            678888875 6999999999999999999999999998  6999999887654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.92  E-value=7.3e-24  Score=190.83  Aligned_cols=257  Identities=12%  Similarity=0.075  Sum_probs=185.0

Q ss_pred             HhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhH
Q 018042           34 MGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKP  113 (361)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~  113 (361)
                      ++.++.+.+.+..++.                    .|.+.+++|.|.++.|++.+.+.++..+++++.|+++||+|||+
T Consensus        13 ~~~~~~~~~~~~~~~~--------------------lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633         13 CGLLLLTLAIAVLNTL--------------------VPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             HHHHHHHHhhhhHHHH--------------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4556666666665554                    45556677999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhh
Q 018042          114 SVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYG  193 (361)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  193 (361)
                      ++..+.++..++++++++++|++.++++|++.|++.+...+.....+.+..++++|+++++.+..+..+|..+++.++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999888888888899999999999999999999999999999776


Q ss_pred             hcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcc
Q 018042          194 TEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTIN  272 (361)
Q Consensus       194 ~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (361)
                      +....   .|.. .+..+.......... ...+|++      .+                                ++..
T Consensus       153 l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~--------------------------------~~~~  190 (381)
T PRK03633        153 VSTEL---MSVL-PWVTGLVLAAILPLLFTRILNQQ------AE--------------------------------NHDS  190 (381)
T ss_pred             ccccc---cchH-HHHHHHHHHHHHHHHHhcccCCC------CC--------------------------------CCCC
Confidence            65421   1222 222222111111111 1122210      00                                0001


Q ss_pred             cchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhcc
Q 018042          273 HPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRW  352 (361)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~gr  352 (361)
                      .+.++.++++..+...    ...+.....+.....+.|.++++.|.+....+.......++.+++.+..++  +.||+++
T Consensus       191 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~dr~~~  264 (381)
T PRK03633        191 TSIWPMLKLRQARLGV----NGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGR--LADRFGR  264 (381)
T ss_pred             CCHHHHHHhcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHH--HHHHcCc
Confidence            1223334333222111    111111122334556789888888999988888888888999999999999  6999999


Q ss_pred             ceeecc
Q 018042          353 RKLDIY  358 (361)
Q Consensus       353 r~~~~~  358 (361)
                      |+.+..
T Consensus       265 ~~~l~~  270 (381)
T PRK03633        265 LLVLRV  270 (381)
T ss_pred             HHHHHH
Confidence            987643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.92  E-value=4.2e-24  Score=193.32  Aligned_cols=267  Identities=12%  Similarity=0.092  Sum_probs=192.7

Q ss_pred             HHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 018042           31 MAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG  110 (361)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G  110 (361)
                      +++...+..|+..+..++.                    .|.+++++|++..+.+++.+.+.+++.+++++.|++.||+|
T Consensus         7 ~~~~~f~~~G~~~~~~~~l--------------------~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G   66 (410)
T TIGR00885         7 LITSLFALWGFANDITNPM--------------------VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS   66 (410)
T ss_pred             HHHHHHHHHHHHHHhHHHH--------------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3444557777777666555                    56668888999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHH
Q 018042          111 RKPSVLMGGAAFLAGSALGGA---AVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAA  187 (361)
Q Consensus       111 rr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~  187 (361)
                      ||++++.+.+++++++++...   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..++
T Consensus        67 ~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g  146 (410)
T TIGR00885        67 YKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIG  146 (410)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988644   46899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccC-----------------------CCcchHHHHHhhHHHHHHHHHhccc--ccCChhHHHhhCCCHHHHH
Q 018042          188 NFINYGTEQIK-----------------------GGWGWRVSLALAAVPASILTLGALF--LPETPNSLIQRKSDHQKAK  242 (361)
Q Consensus       188 ~~~~~~~~~~~-----------------------~~~~wr~~~~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~  242 (361)
                      +.++..+....                       +..+||+.|++.+++.++..+...+  .||.++     ++  ++  
T Consensus       147 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~--~~--  217 (410)
T TIGR00885       147 MVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD--AK--  217 (410)
T ss_pred             HHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc--cc--
Confidence            99877664221                       1136999998887766665544433  343210     00  00  


Q ss_pred             HHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhc--CCCC
Q 018042          243 LMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI--GLGR  320 (361)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~  320 (361)
                                               +...+.+.++.++++....    ..+..++..........+++.+.++.  +.+.
T Consensus       218 -------------------------~~~~~~~~~~~~~~~~~~~----~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~  268 (410)
T TIGR00885       218 -------------------------QISFSASLSRLARIRHYRE----GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTA  268 (410)
T ss_pred             -------------------------cccchhhHHHHHhChhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH
Confidence                                     0000112233444432222    22223333333445567788887654  4444


Q ss_pred             hhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          321 LKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       321 ~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      ..+.........+..+|++++++  +.||+++|+++.
T Consensus       269 ~~a~~~~~~~~~~~~vGR~~~~~--l~~r~~~~~~l~  303 (410)
T TIGR00885       269 GFAANYNIGAMVIFFISRFIGTW--LISYLAAHKVLM  303 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHcCHHHHHH
Confidence            44455566666777899999999  699999988754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=99.92  E-value=3.9e-24  Score=194.00  Aligned_cols=243  Identities=14%  Similarity=0.092  Sum_probs=185.3

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|++++++|.+.++.++..+++.++..+++++.|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.
T Consensus        29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  108 (401)
T PRK11043         29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGV  108 (401)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Confidence            34557788999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPN  229 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~  229 (361)
                      +...+....++.|++|+++|++..+.......+|..++|.++..+..   +.+||+.|++.+++.++..+..++++|+++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (401)
T PRK11043        109 CSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN---HFGWQAIFATLFAITLLLILPTLRLKPSKK  185 (401)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            88888888999999999999888888888888899999998776654   348999999888777776665555555432


Q ss_pred             HHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcH
Q 018042          230 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  309 (361)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (361)
                      .    ++ +++                              .+.++++.++++..+......    ......+.....+.
T Consensus       186 ~----~~-~~~------------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  226 (401)
T PRK11043        186 A----RK-QSQ------------------------------DALTFKQLLKSKTYLGNVLIF----AACSAAFFAWLTGS  226 (401)
T ss_pred             c----cc-cch------------------------------HHHHHHHHHcChhHHHHHHHH----HHHHHHHHHHHHHh
Confidence            0    00 000                              011233444332222111111    11122234456678


Q ss_pred             HHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceee
Q 018042          310 PLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  356 (361)
Q Consensus       310 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~  356 (361)
                      |.++++.|++..+.+.......++.++|.+..++  +.||+++|+..
T Consensus       227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~--l~~r~~~~~~~  271 (401)
T PRK11043        227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRA--ALQKWGGEQLL  271 (401)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCHHHHH
Confidence            8888888999988888777777888888888888  59999988753

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.4e-24  Score=187.31  Aligned_cols=321  Identities=20%  Similarity=0.219  Sum_probs=221.2

Q ss_pred             cchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHH
Q 018042           20 KITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVAS   99 (361)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (361)
                      ...|+.....++...+.+.|+||...++.+.   +.+...+....+.         .-+.++...+.+..+.++|.++|+
T Consensus        34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt---~il~~lY~~~~~~---------~g~~ps~i~~~Vn~~A~vGti~GQ  101 (538)
T KOG0252|consen   34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVT---KILGYLYYHGDES---------GGHYPSGVLALVNAAALVGTIFGQ  101 (538)
T ss_pred             chhHHHHHHHHHhhhhhcccchhhhhHHHHH---HHHHHHhcCCCCC---------CCcCCchHHHHHHHHHHHHHHHHH
Confidence            3478899999999999999999999988773   3333333322211         124577788899999999999999


Q ss_pred             HhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh-------hHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccch
Q 018042          100 FVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV-------NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAI  172 (361)
Q Consensus       100 ~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~  172 (361)
                      ++.|++.||+|||+++...++++++++++++++.       -.+++.+.|++.|+|.|+-+|...+..+|..-++.||..
T Consensus       102 l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~  181 (538)
T KOG0252|consen  102 LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAF  181 (538)
T ss_pred             HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccce
Confidence            9999999999999999999999999999877742       235677779999999999999999999999999999998


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhc----ccCCC--------cchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHH
Q 018042          173 NNGFQFSIGIGALAANFINYGTE----QIKGG--------WGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK  240 (361)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~----~~~~~--------~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~  240 (361)
                      ++...+..+.|...|.+++..+.    ...+.        .-||..+.+.+++.+.+....+.+|||+++.....++.+.
T Consensus       182 iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~  261 (538)
T KOG0252|consen  182 IAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQ  261 (538)
T ss_pred             eEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhh
Confidence            88776666666655555544443    22221        2599999999999988888888899999876443332333


Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhh-hcccCchh--HHHHHHHHHHHHHhcchhhhHHcHHHHHHhcC
Q 018042          241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKK-IIQRKYRP--QLLMAMAIPFFQQVTGINVIAFYAPLLFRTIG  317 (361)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  317 (361)
                      +.   ++..++.+.+.+.++.  . +......++... ..+...++  +.++..+..+|..-..++....+...+++..|
T Consensus       262 a~---~d~~k~~~~~~~~~~~--~-~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig  335 (538)
T KOG0252|consen  262 AA---GDMKKVLSVDIEAEST--A-ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIG  335 (538)
T ss_pred             hh---hccccccccccchhhc--c-ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhc
Confidence            22   1111111111110000  0 111111111122 22222222  44556666777777778888889999998887


Q ss_pred             CCChhhHH--------H-hhhhhhcccccccchhhHHHHhhhccceeecccC
Q 018042          318 LGRLKVCQ--------L-SKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  360 (361)
Q Consensus       318 ~s~~~~~~--------~-~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~~  360 (361)
                      +.+.+...        . ..+...+.++|..+...  ++|++||++..+.|+
T Consensus       336 ~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~--~id~iGRk~iq~~GF  385 (538)
T KOG0252|consen  336 VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVY--FIDIIGRKYIQLMGF  385 (538)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEE--EeehhhhHHHHHhhH
Confidence            76654433        2 23334455568888887  699999999877665

>TIGR00897 2A0118 polyol permease family

Probab=99.92  E-value=1.9e-23  Score=189.33  Aligned_cols=245  Identities=11%  Similarity=0.058  Sum_probs=174.1

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh---h-hhhHHHHHHHHHHHHhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---A-AVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~  149 (361)
                      .+++|.+.++.++..+.+.++..++.++.|++.||+|||+++..+.++.+++++++.   . .++++.+++.|++.|++.
T Consensus        40 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~  119 (402)
T TIGR00897        40 LKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGY  119 (402)
T ss_pred             HHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcch
Confidence            345688999999999999999999999999999999999999999999888876542   3 357888899999999998


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHH-HHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCC
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGA-LAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPET  227 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es  227 (361)
                      +...+.....+.|++|+++|++++++.+.+.++|. ++++.++..+..   ..||+..++.......+..+.. ++.+|.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (402)
T TIGR00897       120 PLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP---AFGEMNTLWSALAFVLTGGVIALFSNKDI  196 (402)
T ss_pred             HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            88888888889999999999999999999999996 578888655443   2465554444333322222222 334443


Q ss_pred             hhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHH
Q 018042          228 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  307 (361)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (361)
                      ++.  +++++++             +    .++          .++.++.+++++.    ++...+..+++.........
T Consensus       197 ~~~--~~~~~~~-------------~----~~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  243 (402)
T TIGR00897       197 FTP--QHMQTRE-------------K----FSE----------LGKAATILFTNPN----VLLGGMVRIINTIGLFGFAV  243 (402)
T ss_pred             CCc--ccccCCc-------------c----hhh----------HHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHH
Confidence            210  0000000             0    000          0112333444432    22222333334445567788


Q ss_pred             cHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceee
Q 018042          308 YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  356 (361)
Q Consensus       308 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~  356 (361)
                      +.|.++++.|++..+.+.......+++.++.+..|+  ++||++||+..
T Consensus       244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~--l~dr~~~~~~~  290 (402)
T TIGR00897       244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGI--VGDKLGWMNTV  290 (402)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHhhcchhHH
Confidence            999999888999999888888888999999999999  69999988764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10504 putative transporter; Provisional

Probab=99.91  E-value=1.4e-23  Score=194.48  Aligned_cols=294  Identities=13%  Similarity=0.126  Sum_probs=202.6

Q ss_pred             HHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhch
Q 018042           32 AGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR  111 (361)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr  111 (361)
                      ++++.+...++....++.                    .|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+||
T Consensus        15 ~~~~~~~~~~~~~~~~~~--------------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~   74 (471)
T PRK10504         15 VAFGFFMQSLDTTIVNTA--------------------LPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV   74 (471)
T ss_pred             HHHHHHHHHHhHHHHHHH--------------------HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            334556666666655443                    445566779999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHH
Q 018042          112 KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFIN  191 (361)
Q Consensus       112 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  191 (361)
                      |++++.+.++..++.++++++++++.++++|++.|++.+...+....++.|++|+++|+++.++......+|..+++.++
T Consensus        75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  154 (471)
T PRK10504         75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG  154 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCChhHHHhhCCCHHHHHHHH-------H--HhhCCcc---hHHHH
Q 018042          192 YGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETPNSLIQRKSDHQKAKLML-------Q--RVRGTND---VEAEF  258 (361)
Q Consensus       192 ~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~~~~~~~~~~~~~~~~~~-------~--~~~~~~~---~~~~~  258 (361)
                      +.+.+.   .+||+.|.+......+..+... ..|+.+..   ..+ .+......       .  ...+.+.   .....
T Consensus       155 g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~---~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (471)
T PRK10504        155 GLLVEY---ASWHWIFLINIPVGIIGAIATLMLMPNYTMQ---TRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAI  227 (471)
T ss_pred             HHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHH
Confidence            777643   4899999987776665554443 34544311   111 11110000       0  0000000   00000


Q ss_pred             HH-----------HHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHH
Q 018042          259 DD-----------LLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQL  326 (361)
Q Consensus       259 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~  326 (361)
                      ..           ...++...++...+. ++++++....    .....++..........+.|+|++. .|.++...++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  302 (471)
T PRK10504        228 AGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSL----GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLM  302 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            00           000001111111122 3444433222    2222223333345566778888874 69999999988


Q ss_pred             hhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          327 SKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       327 ~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .....++.+++.++.++  +.||+|||+++..+
T Consensus       303 ~~~~~~~~~~~~~~~~~--l~~r~g~~~~~~~~  333 (471)
T PRK10504        303 MIPMVLGSMGMKRIVVQ--VVNRFGYRRVLVAT  333 (471)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHcCchHHHHHH
Confidence            88888888888888888  69999999887644

>TIGR00896 CynX cyanate transporter

Probab=99.91  E-value=1.8e-23  Score=186.49  Aligned_cols=243  Identities=19%  Similarity=0.179  Sum_probs=181.0

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+++++|++.++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.. ..++.+.+++.|++.|++.
T Consensus        23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~  101 (355)
T TIGR00896        23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGI  101 (355)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence            566788899999999999999999999999999999999999999999998888888777 7789999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPN  229 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~  229 (361)
                      +...+....++.|++| ++|++++++.+.+..+|..+++.+...+..... .+||+.|...++..++...  .++||.++
T Consensus       102 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~~~  177 (355)
T TIGR00896       102 AIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQVRR  177 (355)
T ss_pred             HHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhhcc
Confidence            9888888888999986 689999999999999999999888666553321 2499988776654433322  22344321


Q ss_pred             HHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcH
Q 018042          230 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  309 (361)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (361)
                      .    ++ +                            +++..+...++.++++.    .+...+..+.....+.....|.
T Consensus       178 ~----~~-~----------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l  220 (355)
T TIGR00896       178 R----VA-A----------------------------NQTTTRLTPVRIWRSPL----AWQVTVFFGLQSGLYYSLIGWL  220 (355)
T ss_pred             c----cC-C----------------------------CCCCCCCCCchhhcCHh----HHHHHHHHHHHHHHHHHHHHHH
Confidence            0    00 0                            00000112334444322    2222222333333445667789


Q ss_pred             HHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhc-cceee
Q 018042          310 PLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVR-WRKLD  356 (361)
Q Consensus       310 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~g-rr~~~  356 (361)
                      |.++++.|++..+.+...+...++.+++.++.++  +.||++ ||+.+
T Consensus       221 p~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~--l~dr~~~~~~~~  266 (355)
T TIGR00896       221 PAILISHGASAATAGSLLALMQLAQAASALLIPA--LARRVKDQRGIV  266 (355)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH--HHhhhccchHHH
Confidence            9999888999999999999999999999999999  699995 45443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.91  E-value=1.2e-23  Score=190.10  Aligned_cols=243  Identities=21%  Similarity=0.227  Sum_probs=176.0

Q ss_pred             CchhHHHHHHH-----HHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHHH
Q 018042           80 DSQLLTSFTSS-----LYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY--------MLIFGRLLLG  146 (361)
Q Consensus        80 ~~~~~~~~~~~-----~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G  146 (361)
                      ++++.+...+.     ..++..+++++.|+++||+|||+++..+.++..++.+++++++++.        .++++|+++|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  107 (394)
T TIGR00883        28 GDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQG  107 (394)
T ss_pred             CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHH
Confidence            44445544432     3334457899999999999999999999999999999999998875        4788899999


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhccc-----CCCcchHHHHHhhHHHHHHHHHhc
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI-----KGGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      ++.+...+....++.|++|+++|++..+....+..+|.++++.++..+...     .+..+||+.|++.+++.++.....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  187 (394)
T TIGR00883       108 FSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR  187 (394)
T ss_pred             hhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998886655431     134689999988777665555444


Q ss_pred             ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcc
Q 018042          222 LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG  301 (361)
Q Consensus       222 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (361)
                      ...||++++..+++                               ++++.+.+.++.++++. ++.+. .....+.....
T Consensus       188 ~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~  234 (394)
T TIGR00883       188 RNLEETPVFEKAQE-------------------------------KHKKKRGPIRETLTKHR-KPFLL-GLGLVIATTTT  234 (394)
T ss_pred             HhcCCChhHHHHHh-------------------------------ccccccCCHHHHHHhch-HHHHH-HHHHHHHHHHH
Confidence            55677653211100                               00111223444443322 11222 22333333344


Q ss_pred             hhhhHHcHHHHH-HhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          302 INVIAFYAPLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       302 ~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      ......+.|.++ ++.|.+..+.+.......++..++.++.++  ++||+|||+.+.
T Consensus       235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~~~  289 (394)
T TIGR00883       235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGA--LSDRIGRRPVLI  289 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHhchHHHHH
Confidence            556777888888 456899999998888888999999999999  699999998654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.2e-24  Score=184.25  Aligned_cols=248  Identities=15%  Similarity=0.165  Sum_probs=195.1

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN---VYMLIFGRLLLG  146 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G  146 (361)
                      .+.+++++|+|++|.+++.++..+...+.-++.|.+.||+|.|++...++++..+-++..+++.+   ++++++++++.|
T Consensus        37 ~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G  116 (417)
T COG2223          37 GVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLG  116 (417)
T ss_pred             HhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHh
Confidence            55667999999999999999999999999999999999999999999999999999999998754   459999999999


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-cc
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LP  225 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~  225 (361)
                      ++ |..+.....+++++||+|++|.+++++. ..++|..+...++..+........||....+..+..++..+..++ ..
T Consensus       117 ~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         117 LA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             cc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            97 5567788899999999999999999998 777787766666555443321012999988888877776666654 66


Q ss_pred             CChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcc-cchhhhcccCchhHHHHHHHHHHHHHhcchhh
Q 018042          226 ETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTIN-HPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  304 (361)
Q Consensus       226 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
                      |.|......+.                                  .. .+++.++++    +..+.+.+.++..+.++..
T Consensus       195 d~p~~r~~~~~----------------------------------~~~~~~~~v~~~----~~~W~lsllY~~tFG~Fvg  236 (417)
T COG2223         195 DVPEHRASVKP----------------------------------QLPAQLKAVFSN----KDTWLLSLLYFATFGGFVG  236 (417)
T ss_pred             CChhhhccccc----------------------------------cchhHHHHHhcC----cchHHHHHHHHHHHHHHHH
Confidence            66532111110                                  00 123334333    3334456667777788899


Q ss_pred             hHHcHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          305 IAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       305 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +..++|.|++ ++|.++.+++.....+.+.+.+.+..+|+  ++||+|.+|++.+.
T Consensus       237 fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~--LsDR~Gg~rv~~~~  290 (417)
T COG2223         237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGW--LSDRIGGRRVTLAV  290 (417)
T ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccch--hhhhccchhHHHHH
Confidence            9999999996 56999999999999999999999999999  69999988876543

>PRK12382 putative transporter; Provisional

Probab=99.91  E-value=1e-22  Score=184.24  Aligned_cols=236  Identities=15%  Similarity=0.114  Sum_probs=165.3

Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh---h-----hhhHHHHHHHHHH
Q 018042           73 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---A-----AVNVYMLIFGRLL  144 (361)
Q Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~~~~~r~l  144 (361)
                      +++++|+|.++.+++.+++.++..+++++.|+++||+|||++++.+.+...++.+...   .     .++++.++++|++
T Consensus        42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  121 (392)
T PRK12382         42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLI  121 (392)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Confidence            4677899999999999999999999999999999999999999998887776554321   1     3578899999999


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       145 ~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      .|++.+...+...+++.|++|+|+|++++++.+.+...|..++++++..+..   ..+||+.+.+..+..++........
T Consensus       122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~  198 (392)
T PRK12382        122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS---HFGFAALALTTMVLPLLAWAFNGTV  198 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998888889999999999999999999999999999999999776654   3479987766544433333222223


Q ss_pred             cCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhh
Q 018042          225 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  304 (361)
Q Consensus       225 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
                      ||.++.   +++                                   +.+.++.++...+.. .. ..+    .......
T Consensus       199 ~~~~~~---~~~-----------------------------------~~~~~~~~~~~~~~~-~~-~~l----~~~~~~~  234 (392)
T PRK12382        199 RKVPAH---AGE-----------------------------------RPSLWSVVGLIWKPG-LG-LAL----QGVGFAV  234 (392)
T ss_pred             cCCCCC---ccc-----------------------------------CchHHHHHHHHHHhH-HH-HHH----HHHHHhH
Confidence            332110   000                                   001111111100111 11 111    1122334


Q ss_pred             hHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          305 IAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       305 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      ...+.|.++++.|++.  .+.......++.+++.+..++  +.||+|+|+.+..+
T Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~~  285 (392)
T PRK12382        235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGW--MPDRFGGVKVAIVS  285 (392)
T ss_pred             HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHH--HHHhcCCCeehHHH
Confidence            5667777777766653  445555667777888888998  69999999887644

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.91  E-value=2.9e-23  Score=187.32  Aligned_cols=247  Identities=13%  Similarity=0.071  Sum_probs=178.4

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      .++++.+..+.+++.+.+.+++.+..++.|+++||+|||++++.+.++..++++.+.++.+.   ++.|+++|++.+...
T Consensus        30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~  106 (393)
T PRK11195         30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYS  106 (393)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            34557788899999999999999999999999999999999999999999988887777664   678999999999999


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHh
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQ  233 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~  233 (361)
                      |...+++.|++|+++|++++++.+....+|.++||.+++.+...    .|+..+.+.+...++..+..+.+||+|+....
T Consensus       107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~  182 (393)
T PRK11195        107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGARRPG  182 (393)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence            99999999999999999999999999999999999999887753    37777766655544444444567886532110


Q ss_pred             hCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHH
Q 018042          234 RKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLF  313 (361)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (361)
                      ++.   +...             ...+.          ++.++.+++++..+...+...+.++.    .....+..|.++
T Consensus       183 ~~~---~~~~-------------~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  232 (393)
T PRK11195        183 QSW---NPIA-------------LLRDF----------FHACRVLWRDKLGRFSLAGTTLFWGA----GATLRFLVLAWA  232 (393)
T ss_pred             cCC---CHHH-------------HHHHH----------HHHHHHHHhCchhHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            000   0000             00000          01123445444433333222222221    223344555555


Q ss_pred             H-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          314 R-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       314 ~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      + ..|.++.+.+.......++.++|.+..++  +.||.++|+.+..+
T Consensus       233 ~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~--l~~~~~~~~~~~~g  277 (393)
T PRK11195        233 PVALGITLNQPAYLQAVVAIGIAVGAGAAAR--LVTLETVLRVLPAG  277 (393)
T ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHH--HhcCCcccchHHHH
Confidence            4 35999999999999999999999999998  58888887765443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.91  E-value=2.2e-23  Score=188.99  Aligned_cols=235  Identities=20%  Similarity=0.150  Sum_probs=167.3

Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh--------hhHHHHHHHHHH
Q 018042           73 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--------VNVYMLIFGRLL  144 (361)
Q Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~r~l  144 (361)
                      +++++|.|..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+.+.++        .+++.+++.|++
T Consensus        42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  121 (399)
T PRK05122         42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLL  121 (399)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Confidence            466779999999999999999999999999999999999999999999888776655443        256788999999


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       145 ~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      .|++.+...+....++.|++|+++|++++++...+..+|.++++.++..+..   +.+||+.+++..+..++..+.....
T Consensus       122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~  198 (399)
T PRK05122        122 LGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH---WGGLAGLGLLIMLLALLGLLLARPR  198 (399)
T ss_pred             HHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999776654   3479998877666554433333223


Q ss_pred             cCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhh
Q 018042          225 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  304 (361)
Q Consensus       225 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
                      |++++    +++   +                               +.++++.+++.....  ....+    ....+..
T Consensus       199 ~~~~~----~~~---~-------------------------------~~~~~~~~~~~~~~~--~~~~~----~~~~~~~  234 (399)
T PRK05122        199 PAVPP----VKG---E-------------------------------RLPFRRVLGRVWPYG--MGLAL----ASIGFGT  234 (399)
T ss_pred             CCCCC----CCc---c-------------------------------chhHHHHHHHHHHHH--HHHHH----HHHHHHH
Confidence            33221    000   0                               001111111100001  11111    1122334


Q ss_pred             hHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          305 IAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       305 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      ...+.+.++++.|.+  +.+.......++.+++.++.++  +.||+++|+.+..
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~~~~  284 (399)
T PRK05122        235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGN--LINRLGGLRVAIV  284 (399)
T ss_pred             HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHH--HHHHhccHHHHHH
Confidence            556777777666663  3455566777888889899998  6999999887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.90  E-value=8.5e-23  Score=184.84  Aligned_cols=240  Identities=15%  Similarity=0.205  Sum_probs=180.3

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+.+++|++..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.
T Consensus        31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  110 (394)
T PRK11652         31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT  110 (394)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Confidence            45556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +...+....+..|.+++++|+++.+....+..+|..++|.++..+.+   ..+||+.|++.++..++..+.. ++.||++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        111 GVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT---LFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            88888888899999999999999999999999999999999876654   3489999998877666554433 5577764


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +..   ++ +++                              .++++++.++++..+.....    .+...........+
T Consensus       188 ~~~---~~-~~~------------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  229 (394)
T PRK11652        188 PAD---AR-RTR------------------------------VLASYRTLLSNRRFNCYLLM----LIGTLAGIAVFEAC  229 (394)
T ss_pred             ccc---cc-hhH------------------------------HHHHHHHHHcChHHHHHHHH----HHHHHHHHHHHHHh
Confidence            210   00 000                              01123334443322222221    11122223344555


Q ss_pred             HHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhcc
Q 018042          309 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRW  352 (361)
Q Consensus       309 ~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~gr  352 (361)
                      .+.++++ .|.+..+.+.......++.+++..+.++  +.||.++
T Consensus       230 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~--l~~~~~~  272 (394)
T PRK11652        230 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR--PNKRFST  272 (394)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            6667765 6999888888887777888888888887  5888774

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.90  E-value=2e-23  Score=191.81  Aligned_cols=260  Identities=13%  Similarity=0.074  Sum_probs=179.5

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFG-RLLLGVG  148 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-r~l~G~~  148 (361)
                      .|++.+++|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..+++++++++++++.+++. |++.|++
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~  121 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLG  121 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            455677889999999999999999999999999999999999999999999999999999999999988754 7999999


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc-cCC
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-PET  227 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-~es  227 (361)
                      .+...+....++.++++ ++|+++.++.+.+..+|..++++++..+...   .+||+.|++.+++.++..+..++. ++.
T Consensus       122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~~  197 (455)
T TIGR00892       122 LAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCVCGALMRPVG  197 (455)
T ss_pred             chhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            98877777888899996 7899999999999999999998887666543   489999999888776655444333 322


Q ss_pred             hhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHH
Q 018042          228 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  307 (361)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (361)
                      +...  ..+ .++.    +.....+..+..    +.....++..+....+.++++    .++......+....+......
T Consensus       198 ~~~~--~~~-~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~  262 (455)
T TIGR00892       198 PSQR--VSK-SKSK----EGLPPDGSTKKL----SKKSTAEKINRFLDFSLFTHR----GFLVYLSGNVIMFLGFFAPII  262 (455)
T ss_pred             cccc--ccc-cccc----ccCCCCCccccc----cccchhhhhhhhcchHHhcCc----hHHHHHHHHHHHHHHccchHH
Confidence            2100  000 0000    000000000000    000000000000001233332    222222333333334455667


Q ss_pred             cHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhh
Q 018042          308 YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRV  350 (361)
Q Consensus       308 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~  350 (361)
                      ++|.+.++.|++..+++.+.....++.+++.++.++  +.||.
T Consensus       263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~d~~  303 (455)
T TIGR00892       263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGL--IAGLK  303 (455)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hhccc
Confidence            888888888999999999999999999999999998  58873

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.90  E-value=1.3e-22  Score=184.44  Aligned_cols=151  Identities=17%  Similarity=0.095  Sum_probs=126.4

Q ss_pred             cccccCCchh-----HHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 018042           74 SNYCKFDSQL-----LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG  148 (361)
Q Consensus        74 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  148 (361)
                      .+++|++..+     .+++.++..++..+++++.|+++||+|||+++..+.++..++.++..+.++++.+++.|++.|++
T Consensus        41 ~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  120 (408)
T PRK09874         41 VEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL  120 (408)
T ss_pred             HHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            3344666443     48889999999999999999999999999999999999999999998999999999999999998


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCC
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPET  227 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es  227 (361)
                      .+ ..+....++.|++|+++|++++++...+..+|.++++.++..+...   .+||+.|++.++..++..+.. ++.||+
T Consensus       121 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        121 GG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             hh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            65 4677788899999999999999999999999999999998766543   479999998887766655544 446665


Q ss_pred             h
Q 018042          228 P  228 (361)
Q Consensus       228 ~  228 (361)
                      +
T Consensus       197 ~  197 (408)
T PRK09874        197 F  197 (408)
T ss_pred             c
Confidence            3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.90  E-value=1.6e-22  Score=181.90  Aligned_cols=242  Identities=15%  Similarity=0.130  Sum_probs=173.8

Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 018042           73 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLM-GGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      +++++|.+..+.+++.+.+.+...+.+++.|+++||+|||+.++. +.++..++.++.+++++++.+++.|++.|.+.+.
T Consensus        24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  103 (375)
T TIGR00899        24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAST  103 (375)
T ss_pred             HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhh
Confidence            467789999999999999999999999999999999999887654 5666677778888999999999999999988888


Q ss_pred             hhhHHHHHHHhcCCcccccch--hhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          152 ANQSVPLYLSEMAPARYRGAI--NNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      ..+....+..|+.|++.|+..  .+....+.++|.++++.++..+.+.   .+||+.|++.+++.++..+.. +++||+|
T Consensus       104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            888888889999887777654  5677778889999999997776543   489999999888776666555 4478876


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +...++.+                                   +.+.++.++++..+.......+.+    ........+
T Consensus       181 ~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  221 (375)
T TIGR00899       181 RGAPGALT-----------------------------------RLEVRGLLASRDTRLLFVACTLMW----GCNILYIIN  221 (375)
T ss_pred             cCcccccC-----------------------------------cchhhhhhcCcchHHHHHHHHHHH----HHHHHHHhh
Confidence            32100000                                   001112233322222222111111    122334556


Q ss_pred             HHHHH-HhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          309 APLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       309 ~~~~~-~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      .|.++ ++.|.++.+.+..........+++.++.++  +.||+|||+.+..
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~  270 (375)
T TIGR00899       222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGY--LIKRFGKRRLMLL  270 (375)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhcchhHHHH
Confidence            67776 456999888888777766667778888888  6999999987654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.89  E-value=1.6e-22  Score=179.80  Aligned_cols=222  Identities=26%  Similarity=0.391  Sum_probs=188.3

Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 018042           72 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      ...+++|.+.++.++..+...++..+++++.|+++||+|||+.+..+.++..++.+...+.++++.++++|++.|++.+.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  103 (352)
T cd06174          24 LLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGA  103 (352)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccccc
Confidence            33455678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHH
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL  231 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~  231 (361)
                      ..+...+++.|++|+|+|++.+++......+|..+++.++..+.+.   .+||+.+++.++..++..+...+++      
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------  174 (352)
T cd06174         104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFLILAILGLLLALLLLFLL------  174 (352)
T ss_pred             ccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            9999999999999999999999999999999999999998777653   3699999988877776665544332      


Q ss_pred             HhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHH
Q 018042          232 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPL  311 (361)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (361)
                                                                            +.++...+..+...........+.|.
T Consensus       175 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (352)
T cd06174         175 ------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPL  200 (352)
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                                                                  11222333344444556777888888


Q ss_pred             HHHhc-CCCChhhHHHhhhhhhcccccccchhhHHHHhhhccce-eecc
Q 018042          312 LFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK-LDIY  358 (361)
Q Consensus       312 ~~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~-~~~~  358 (361)
                      +.++. |.+..+.+.......++..++.++.++  +.||++||+ .+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~  247 (352)
T cd06174         201 YLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL--LSDRLGRRRLLLLI  247 (352)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHH
Confidence            88766 999999999999999999999999999  699999998 6543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00901 2A0125 AmpG-related permease

Probab=99.89  E-value=3.5e-22  Score=178.36  Aligned_cols=254  Identities=13%  Similarity=0.057  Sum_probs=178.5

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-----chhHHH-HHHHHHHHHHHHHhhhh---hhHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-----GRKPSV-LMGGAAFLAGSALGGAA---VNVYMLIF  140 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~~~~~~~  140 (361)
                      .|.+.+|+|+|.++.++..+. .+...+ .+++|+++||+     |||+.+ +.+.++.++.....++.   .+.+.+..
T Consensus        11 ~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~   88 (356)
T TIGR00901        11 LPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAG   88 (356)
T ss_pred             HHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence            455677889999999999755 444444 89999999998     898874 56777777776666666   46666777


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCC-----CcchHHHHHhhHHHHH
Q 018042          141 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG-----GWGWRVSLALAAVPAS  215 (361)
Q Consensus       141 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~wr~~~~~~~~~~~  215 (361)
                      ..++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+....+     .++||..|++.++..+
T Consensus        89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l  168 (356)
T TIGR00901        89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLIL  168 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHH
Confidence            78888888888899999999999999999999999999999999999999876654432     2249999999888777


Q ss_pred             HHHHhccc-ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHH
Q 018042          216 ILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIP  294 (361)
Q Consensus       216 ~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (361)
                      +..+..++ .||+++.   +++ +++                +.          ++.+.+++++++++..++.+..... 
T Consensus       169 ~~~~~~~~~~~e~~~~---~~~-~~~----------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-  217 (356)
T TIGR00901       169 PGLLVTLFLAKEPQED---ASV-PKP----------------LT----------QAVLKPIREFFQRKNMIQALLLLLL-  217 (356)
T ss_pred             HHHHHHHHhccCCCcc---ccc-chh----------------HH----------HHHHHHHHHHHHhcCchHHHHHHHH-
Confidence            66555544 5664320   000 000                00          0001133444444332233332222 


Q ss_pred             HHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhh-hcccccccchhhHHHHhhhccceeecc
Q 018042          295 FFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIE-CGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      .+......+....+.|.++++.|++..+.+....... ++.++|.+++++  +.||+|||+.+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~--l~~r~g~~~~l~~  280 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGI--IMQPLNILYALLL  280 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHH
Confidence            2223344456677888888778999999887776655 577899999999  6999998877554

>PRK10054 putative transporter; Provisional

Probab=99.88  E-value=7.4e-22  Score=178.29  Aligned_cols=243  Identities=12%  Similarity=0.016  Sum_probs=173.5

Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhh
Q 018042           73 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  152 (361)
Q Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  152 (361)
                      +++++|++..+.++..+.+.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.++++|.+.|.+.+..
T Consensus        34 l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  113 (395)
T PRK10054         34 LSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVF  113 (395)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            35677999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             hhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHH
Q 018042          153 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSL  231 (361)
Q Consensus       153 ~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~  231 (361)
                      .+....+..|.+|+++|+++.++.....++|.+++|+++..+..    .+|+..|++.++..++..+.. +++||+++. 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~-  188 (395)
T PRK10054        114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEKA-  188 (395)
T ss_pred             HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhccccc-
Confidence            88899999999999999999999999999999999999887653    379999998877766655444 335554310 


Q ss_pred             HhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHH
Q 018042          232 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPL  311 (361)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (361)
                        +++  ++               +         +     ..+.++.++++..+.......+..+.    ......+.+.
T Consensus       189 --~~~--~~---------------~---------~-----~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~  231 (395)
T PRK10054        189 --IAT--ET---------------G---------S-----VWSPSVLLQDKALLWFTCSGFLASFV----SGAFASCISQ  231 (395)
T ss_pred             --ccc--ch---------------h---------h-----hhhhhhhccCceehHHHHHHHHHHHH----HHHhhhhHHH
Confidence              000  00               0         0     00113344443332222222221111    2222334444


Q ss_pred             HH---HhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          312 LF---RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       312 ~~---~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +.   ++.+.+....+.......+..+......+.  +.||.++|+.+..+
T Consensus       232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~l~~~  280 (395)
T PRK10054        232 YVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGR--RLNAANIRPLMTAG  280 (395)
T ss_pred             HHHHhcccchHHHHHHHHHHhhhhheeeehhHHHH--HHccCCchhHHHHH
Confidence            44   233555556666666666666666666666  59999988876544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.88  E-value=1.1e-21  Score=181.54  Aligned_cols=244  Identities=16%  Similarity=0.156  Sum_probs=171.0

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-----chhHH-HHHHHHHHHHHHHHhhhh---hhHHHHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-----GRKPS-VLMGGAAFLAGSALGGAA---VNVYMLIFGRLL  144 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l  144 (361)
                      .++.|.+.++++.+ +.....+ ++.+++|+++||+     |||+. +..+.+..+++....++.   ++++.+.+.+++
T Consensus        39 l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l  116 (491)
T PRK11010         39 MTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVV  116 (491)
T ss_pred             HHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            44447788888886 3333333 6899999999999     99985 556777777777666664   478888889999


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       145 ~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      .|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+...  ..|||..|++.++..++..+..++.
T Consensus       117 ~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~~~~  194 (491)
T PRK11010        117 IAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIATLLA  194 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999887766541  2489999999888777666655567


Q ss_pred             cCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhh
Q 018042          225 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  304 (361)
Q Consensus       225 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
                      ||+++..   ++ +++             .+             +....++++.++++..+.......   ... .....
T Consensus       195 ~e~~~~~---~~-~~~-------------~~-------------~~~~~~l~~~~~~~~~~~~ll~~~---l~~-~~~~~  240 (491)
T PRK11010        195 PEPTDTI---PV-PKT-------------LE-------------QAVVAPLRDFFGRNNAWLILLLIV---LYK-LGDAF  240 (491)
T ss_pred             CCCcccc---cc-ccc-------------hh-------------hhHHHHHHHHHcCcCHHHHHHHHH---HHH-HHHHH
Confidence            8864310   00 000             00             000113445554433222222221   111 22233


Q ss_pred             hHHcHHHHH-HhcCCCChhhHHHhh-hhhhcccccccchhhHHHHhhhccceeec
Q 018042          305 IAFYAPLLF-RTIGLGRLKVCQLSK-WIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       305 ~~~~~~~~~-~~~g~s~~~~~~~~~-~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      ...+.+.++ ++.|++..+.+.+.. ...++.++|.+++|+  ++||+|+|+.+.
T Consensus       241 ~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~--L~dr~g~~~~l~  293 (491)
T PRK11010        241 AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGI--LMQRLSLFRALM  293 (491)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHH
Confidence            344555565 567999999999874 556789999999999  699999887654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.88  E-value=4.1e-21  Score=169.71  Aligned_cols=160  Identities=14%  Similarity=0.138  Sum_probs=138.9

Q ss_pred             cccccccccCCchh-HHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 018042           70 DTKISNYCKFDSQL-LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG  148 (361)
Q Consensus        70 ~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  148 (361)
                      .|.+.+++|++.++ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++
T Consensus        49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGva  128 (511)
T TIGR00806        49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVT  128 (511)
T ss_pred             HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667899999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHh---hHHHHHHHHHhccccc
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLAL---AAVPASILTLGALFLP  225 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~---~~~~~~~~~~~~~~~~  225 (361)
                      +|... ....++..|+|+++|+++.++...+..+|.+++++++..+.    ..|||+.+.+   ......+.+++.+++|
T Consensus       129 EA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       129 MAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999 99999999999999999999999999999999999987733    3478876543   3333334445557788


Q ss_pred             CChhHHHhh
Q 018042          226 ETPNSLIQR  234 (361)
Q Consensus       226 es~~~~~~~  234 (361)
                      ..++.+.-+
T Consensus       204 ~~~~sl~f~  212 (511)
T TIGR00806       204 RPKRSLFFN  212 (511)
T ss_pred             CCchhhhhc
Confidence            666655443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.86  E-value=1e-21  Score=179.07  Aligned_cols=244  Identities=12%  Similarity=0.060  Sum_probs=177.5

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-----AVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~  149 (361)
                      ++++.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+.     .++++.+++.|++.|++.
T Consensus        45 ~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  124 (417)
T PRK10489         45 QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFG  124 (417)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            334568889999999999999999999999999999999998888777776655432     567888999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPN  229 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~  229 (361)
                      +...+....++.|++|+++|+++.++......+|..+++.+++.+...   .+|++.+++.++..++..+..+.+||+++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (417)
T PRK10489        125 SLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFITLLPLLRLPALPP  201 (417)
T ss_pred             HHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            888888999999999999999999999999999999999998776543   37999998877776666655566777542


Q ss_pred             HHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcH
Q 018042          230 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  309 (361)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (361)
                      ..   ++ +++                ..+          +.++.++..++++......+..   .... . ......+.
T Consensus       202 ~~---~~-~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~---~~~~-~-~~~~~~~~  246 (417)
T PRK10489        202 PP---QP-REH----------------PLR----------SLLAGFRFLLASPVVGGIALLG---GLLT-M-ASAVRVLY  246 (417)
T ss_pred             CC---cc-ccc----------------chH----------HHHHHHHHHHcChHHHHHHHHH---HHHH-H-HHhHHHhh
Confidence            10   00 000                000          0011223333332222222111   1111 1 23456678


Q ss_pred             HHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          310 PLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       310 ~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      |.++++ .|.+....+.+.....++.+++.++.++  +.||.++++.+..
T Consensus       247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~--l~~~~~~~~~l~~  294 (417)
T PRK10489        247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGW--LAHSARPGLLMLL  294 (417)
T ss_pred             HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHH--hhhccCcchHHHH
Confidence            888877 6999999999999999999999999998  5888666655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.86  E-value=7.2e-21  Score=172.17  Aligned_cols=149  Identities=16%  Similarity=0.172  Sum_probs=132.8

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      ++++|++..+.|+..+...+...+.+++.|+++||+|||+++..+.++..++.+...++++++.+++.|++.|++.+...
T Consensus        38 ~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~  117 (400)
T PRK11646         38 VDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFD  117 (400)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            55678899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccC
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPE  226 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~e  226 (361)
                      +...+++.|++|+++|++++++......+|..++|.+++.+..    .+||+.|++.++..++..+.. ++.||
T Consensus       118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999999887762    489999998877666554433 44555

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.85  E-value=3.6e-20  Score=167.48  Aligned_cols=240  Identities=15%  Similarity=0.097  Sum_probs=161.8

Q ss_pred             ccccccCCchhHHHHHHHHH-HHHHHHHHhhHHHHHhhchhHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 018042           73 ISNYCKFDSQLLTSFTSSLY-VAGLVASFVASSVTRAFGRKPSVL-MGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        73 i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  150 (361)
                      +.+++|.+.++.|++.+... .+..++.++.++ +||+|||+.++ .+.++..+++.+.+++++++.+++.+.+.|...+
T Consensus        42 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  120 (393)
T PRK15011         42 LTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS  120 (393)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            46778999999999977654 466666666666 99999998754 5566666778888889999988766655555556


Q ss_pred             hhhhHHHHHHHhcCCccccc--chhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCC
Q 018042          151 FANQSVPLYLSEMAPARYRG--AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPET  227 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es  227 (361)
                      ...+....+..|+.+++.|.  ...++.+.+.++|.+++|+++..+.+.   .|||..|++.++..++..+.. +++||.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~~~  197 (393)
T PRK15011        121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVCGVMVWLFLPSM  197 (393)
T ss_pred             hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            77888888888888766553  445778888999999999998877643   489999998887776665554 457876


Q ss_pred             hhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHH
Q 018042          228 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  307 (361)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (361)
                      ++.   +++   +.          +              +    .+..+   ++  ++..+........ ..........
T Consensus       198 ~~~---~~~---~~----------~--------------~----~~~~~---~~--~~~~~~~~~~~~~-~~~~~~~~~~  237 (393)
T PRK15011        198 RKE---LPL---AT----------G--------------T----LEAPR---RN--RRDTLLLFVICTL-MWGTNSLYII  237 (393)
T ss_pred             CCC---Ccc---cc----------c--------------c----ccccc---cc--cccHHHHHHHHHH-HHHHHHHHHH
Confidence            421   000   00          0              0    00000   01  0111111111111 1222344556


Q ss_pred             cHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          308 YAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       308 ~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      +.|.+++ +.|+++.+.+.+.....++.+++.++.|+  ++||+|||+.+..
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~--l~dr~g~~~~~~~  287 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGY--FAKRLGKRFLMRV  287 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhChHHHHHH
Confidence            7888875 56999888888877777777888999999  6999999986543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=1.9e-20  Score=158.16  Aligned_cols=150  Identities=20%  Similarity=0.222  Sum_probs=122.3

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  157 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  157 (361)
                      +.+....|.+.+.+.++..++++.+|.++||||||++++++++..++...+.+++.|+..+++.|++.|+..|- ..+..
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHH
Confidence            34667789999999999999999999999999999999999999999999999999997777779999998765 45778


Q ss_pred             HHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhccc---CCCcchHHHHHhhHHHHHH-HHHhcccccCCh
Q 018042          158 LYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI---KGGWGWRVSLALAAVPASI-LTLGALFLPETP  228 (361)
Q Consensus       158 ~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~wr~~~~~~~~~~~~-~~~~~~~~~es~  228 (361)
                      ++++|.+++|+|+++++.+...+++|.++||.+++++.+.   ...+..-.+-++..+.... .....+++||+-
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9999999999999999999999999999999999999872   2211122222233333333 334457799983

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.85  E-value=3.7e-20  Score=167.90  Aligned_cols=245  Identities=15%  Similarity=0.123  Sum_probs=171.3

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-----chhH-HHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-----GRKP-SVLMGGAAFLAGSALGGAA---VNVYMLIFGRLL  144 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l  144 (361)
                      -++.|++.+++|++..+...  .+..+++|+++||+     |||+ .++.+.++.+++....++.   .+++.+++..++
T Consensus        26 l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~  103 (402)
T PRK11902         26 MTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVL  103 (402)
T ss_pred             HHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            34458999999999777665  58899999999999     8875 6788888887777777766   457778888888


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       145 ~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      .+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+....  .+||..|++.++..++..+..++.
T Consensus       104 ~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~~~~  181 (402)
T PRK11902        104 VAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLLMAGLMLAGALTTLWA  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888999999999999999999999999999999999999988876655421  389999999887766655555567


Q ss_pred             cCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhh
Q 018042          225 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  304 (361)
Q Consensus       225 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
                      ||+++.   +++ +++.+                          ++.+++++++++++..+..+....+......   ..
T Consensus       182 ~e~~~~---~~~-~~~~~--------------------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~  228 (402)
T PRK11902        182 PEPEVP---ARP-PRSLG--------------------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FA  228 (402)
T ss_pred             CCCccc---ccc-cchhH--------------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HH
Confidence            776431   000 00000                          0001234556666544443332222222111   11


Q ss_pred             hHHcHHHHHHhcCCCChhhHHHhhhh-hhcccccccchhhHHHHhhhccceeec
Q 018042          305 IAFYAPLLFRTIGLGRLKVCQLSKWI-ECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       305 ~~~~~~~~~~~~g~s~~~~~~~~~~~-~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      .....+.+.++.|+++.+.+.+.... .++.++|.+++++  +.||+++|+.+.
T Consensus       229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~--l~~r~g~~~~l~  280 (402)
T PRK11902        229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGT--LMVRLGLYRSLM  280 (402)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhHHHHHH
Confidence            12233444456799998888887554 4567899999999  699999887654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.84  E-value=3.5e-19  Score=150.20  Aligned_cols=241  Identities=18%  Similarity=0.152  Sum_probs=197.0

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .+++++|+|+|.+..|.++++..+...+.+++..++.+|+|.++.+..++++..++.++-... +.+.++.+..+.|.|.
T Consensus        35 L~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gI  113 (395)
T COG2807          35 LDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGI  113 (395)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhH
Confidence            667799999999999999999999999999999999999999999999999999999999887 7788899999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPN  229 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~  229 (361)
                      +......++.+.+.||+ +-+..+++|....++|..+++.+...+.+..  .+||....+-+.++++.++.++.-...++
T Consensus       114 av~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~WlPq~~r~~  190 (395)
T COG2807         114 AVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWLPQALREQ  190 (395)
T ss_pred             HHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            99999999999999984 5689999999999999999888876666554  38999999988888877776653211110


Q ss_pred             HHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcH
Q 018042          230 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  309 (361)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (361)
                       .                                  ...+....+..+++++    +..+...+++..+...+|....|+
T Consensus       191 -~----------------------------------~~~~~~~~~~~~vw~~----~~aW~vtLfmGlqS~~~Y~~~~WL  231 (395)
T COG2807         191 -A----------------------------------ASIATKLVSVRKVWRS----PLAWQVTLFMGLQSLLYYIVIGWL  231 (395)
T ss_pred             -c----------------------------------cccccccccccccccC----chhHHHHHHHHhhHHHHHHHHHHH
Confidence             0                                  0000111122344555    444455566666777789999999


Q ss_pred             HHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhcccee
Q 018042          310 PLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKL  355 (361)
Q Consensus       310 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~  355 (361)
                      |.++.+.|+|..+++.+.++..+..++..+...+  +.+|...++.
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~--la~R~~n~r~  275 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPL--LARRSKNQRP  275 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHH--HHHHhcccch
Confidence            9999999999999999999999999999999999  5887654443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.84  E-value=3.5e-20  Score=166.90  Aligned_cols=244  Identities=9%  Similarity=0.052  Sum_probs=170.0

Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 018042           72 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSV----LMGGAAFLAGSALGGAAVNVYMLIFGRLLLGV  147 (361)
Q Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  147 (361)
                      ...+++|+|.++++++.+++.+...+++++.|+++||+||+...    ..+..+..+  .....+++++.+++.|.+.|.
T Consensus        29 ~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~  106 (382)
T TIGR00902        29 AWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFAL  106 (382)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHH
Confidence            33556799999999999999999999999999999999985433    222222222  233467899999999999999


Q ss_pred             hhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCC
Q 018042          148 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET  227 (361)
Q Consensus       148 ~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es  227 (361)
                      +.+...+...++..|+  +++|++..+......++|.++++++++.+.+.   .|||..|++......+..+ .+.++|+
T Consensus       107 ~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~~~-~~~~~~~  180 (382)
T TIGR00902       107 FFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFMLI-GFLIKPT  180 (382)
T ss_pred             HHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHH-HHHcCCC
Confidence            9888888888887664  47789999999999999999999997777643   4899998876554333222 2333333


Q ss_pred             hhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHH
Q 018042          228 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  307 (361)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (361)
                      ++.   +++ .++                          ++.+..++.++.++++.    ++...+..+...........
T Consensus       181 ~~~---~~~-~~~--------------------------~~~~~~~~~~~~l~~~~----~~~~l~~~~l~~~~~~~~~~  226 (382)
T TIGR00902       181 IPP---KDA-IPE--------------------------DESQGDSAFIALLKNPM----NLRFLAAVCLIQGAHAAYYG  226 (382)
T ss_pred             CCC---Ccc-ccc--------------------------cccccchhHHHHHcChH----HHHHHHHHHHHHHHHHHHHH
Confidence            210   000 000                          00001123445555532    22222223333344566677


Q ss_pred             cHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          308 YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       308 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +.|.++++.|.+....+.......++.+++....++  +.||+|+|+++.++
T Consensus       227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~--l~~r~g~~~~l~~~  276 (382)
T TIGR00902       227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNK--LFQNCSARDLLLIS  276 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHH--HHhhCCHHHHHHHH
Confidence            888888889999999999988888888999888888  69999999887654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.84  E-value=3.6e-20  Score=189.43  Aligned_cols=248  Identities=13%  Similarity=-0.026  Sum_probs=171.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 018042           81 SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---AAVNVYMLIFGRLLLGVGVGFANQSVP  157 (361)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~  157 (361)
                      ....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..   ..++++.++++|++.|++.+...+...
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  125 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY  125 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence            45578899999999999999999999999999999998877666555443   457899999999999999999999999


Q ss_pred             HHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccC------CCcchHHHHHhhHHHHH-HHHHhcccccCChhH
Q 018042          158 LYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK------GGWGWRVSLALAAVPAS-ILTLGALFLPETPNS  230 (361)
Q Consensus       158 ~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~wr~~~~~~~~~~~-~~~~~~~~~~es~~~  230 (361)
                      +++.|++|+++|++++++...+..+|.++++++++.+....      ...+|++.+.+..+... +..+..+++||+|..
T Consensus       126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (1146)
T PRK08633        126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA  205 (1146)
T ss_pred             hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence            99999999999999999999999999999999988776530      01134444444333333 333344557877642


Q ss_pred             HHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHH
Q 018042          231 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  310 (361)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (361)
                      ...+.+  ++.         ..              ..+.....++.+++++..+..++...    ...........+.|
T Consensus       206 ~~~~~~--~~~---------~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  256 (1146)
T PRK08633        206 APEVFD--KKK---------YL--------------FPKLLWRNLKLLRSDRVLWLAIIGLS----YFWFISQLAQANFP  256 (1146)
T ss_pred             Cccccc--ccc---------cc--------------cHHHHHHHHHHHhcCcHHHHHHHHHH----HHHHHHHHHHHhhH
Confidence            111000  000         00              00000113444444433222222222    22222344556677


Q ss_pred             HHHH-hcCCCCh-hhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          311 LLFR-TIGLGRL-KVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       311 ~~~~-~~g~s~~-~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .++. ..|++.. ..+++.....++.++|.++.++  +.||+++++.+.++
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~--l~~r~~~~~~~~~~  305 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGR--LSGRHIELGLVPLG  305 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HhCCceEccchhHH
Confidence            7774 5699988 8899999999999999999999  69999988776543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.83  E-value=7.6e-20  Score=164.75  Aligned_cols=242  Identities=10%  Similarity=0.050  Sum_probs=167.1

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchh----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRK----PSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .+++|.|.+++|+..+++.++..+++++.|+++||+|||    +.+.+..++.  .......+++++.+++.|++.|++.
T Consensus        31 l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~  108 (382)
T PRK11128         31 LKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFF  108 (382)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHH
Confidence            455688999999999999999999999999999999984    3333222222  2223344688999999999999998


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPN  229 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~  229 (361)
                      +...+...++..++  .++|++..+.......+|..++|++++.+...   .|||..|++.++..++..+...+.||.++
T Consensus       109 ~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  183 (382)
T PRK11128        109 SPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASMLLGQLLRPTIMP  183 (382)
T ss_pred             cccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHccCCCCC
Confidence            88888888887776  35688888888888899999999998877643   47999998777655444443344454321


Q ss_pred             HHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcH
Q 018042          230 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  309 (361)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (361)
                          +++ +++                          +.++...+++++++++..+.......+.    .........+.
T Consensus       184 ----~~~-~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~----~~~~~~~~~~~  228 (382)
T PRK11128        184 ----QGE-SRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVSLL----QGSHAAYYGFS  228 (382)
T ss_pred             ----ccc-ccc--------------------------ccccccchHHHHHcChhHHHHHHHHHHH----HHHhHhHHHHH
Confidence                000 000                          0000123456666654333322222221    12233455666


Q ss_pred             HHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          310 PLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       310 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      |.++++.|.+..+.+.+.....++.++..++.++  +.||+++|+.+..+
T Consensus       229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~l~~~  276 (382)
T PRK11128        229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNR--LFRRWSARDLLLLS  276 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHH--HHHHCCHHHHHHHH
Confidence            7777788999988898888888888888888888  69999999876544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.82  E-value=1.2e-19  Score=185.13  Aligned_cols=240  Identities=14%  Similarity=-0.006  Sum_probs=170.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHH---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 018042           82 QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLM---GGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPL  158 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  158 (361)
                      ...++..+++.+.+.+.++++|+++||+|||+++..   ..++..+..+.....++++.++++|+++|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457788889999999999999999999999997533   22333333333334589999999999999999999999999


Q ss_pred             HHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCH
Q 018042          159 YLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDH  238 (361)
Q Consensus       159 ~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~  238 (361)
                      ++.|++|+++|++++++.+.+..+|.++||++++.+...   .+|++.|+..++..++..++.+++|+++...  .+. .
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  205 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---GNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDL-K  205 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCC-e
Confidence            999999999999999999999999999999999887754   4799998555555555555556677654210  000 0


Q ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cC
Q 018042          239 QKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IG  317 (361)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g  317 (361)
                      .+.           .   ...          .....++.+.+++..+..    .+..+........+..+.|.|+++ .|
T Consensus       206 ~~~-----------~---~~~----------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~g  257 (1140)
T PRK06814        206 IDR-----------N---IIR----------STITLLKYAKADKRIWLA----ILGISWFWLVGAVVLSQLPLLAKETLG  257 (1140)
T ss_pred             ecc-----------c---hHH----------HHHHHHHHHhcCchHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence            000           0   000          001134444444332222    222222222334566788888865 59


Q ss_pred             CCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          318 LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       318 ~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      .+....+.+.+...++.++|.++.++  ++++..+++.+.
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~~~g~--l~~~~~~~~~~~  295 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSFLASK--LSEGRITLLYVP  295 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH--HhCCceeeeeeh
Confidence            99999999999999999999999999  587776665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.82  E-value=4e-19  Score=152.08  Aligned_cols=249  Identities=14%  Similarity=0.136  Sum_probs=194.3

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---AAVNVYMLIFGRLLLG  146 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G  146 (361)
                      .|.+++.|+++..+.+++...++.|+.+.+++.+++.+|+|+|+.++.|+.++++++.+..   ...++..++++-++.|
T Consensus        36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila  115 (422)
T COG0738          36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA  115 (422)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            6666778899999999999999999999999999999999999999999999999999985   5578899999999999


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccC----------------CCcchHHHHHhh
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK----------------GGWGWRVSLALA  210 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~wr~~~~~~  210 (361)
                      .|.+...+....+++...++++-...+++.+..+++|.+++|+++..+....                ....|+++|...
T Consensus       116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~  195 (422)
T COG0738         116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLIL  195 (422)
T ss_pred             hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHH
Confidence            9999999999999999999988888999999999999999999987666410                012578888777


Q ss_pred             HHHHHHHHHhccc--ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHH
Q 018042          211 AVPASILTLGALF--LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLL  288 (361)
Q Consensus       211 ~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (361)
                      +...++..+....  .||.+....+                                 ..+..+....+.+++++    +
T Consensus       196 ~~~lvll~v~~~~~k~p~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~----~  238 (422)
T COG0738         196 AGLLVLLAVLILLSKLPDLQVAAPS---------------------------------LGASGSAGLSSLFQNKH----L  238 (422)
T ss_pred             HHHHHHHHHHHHhccCCcCCccccc---------------------------------ccccccchHHHHHhChH----H
Confidence            7666665555433  4443210000                                 00000113445555533    3


Q ss_pred             HHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          289 MAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      ....+..++..........|++.|+.+ .|.+..++....+.+..+.++|++++.+  +..|+...|.+.
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~--lm~~~~~~k~La  306 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSA--LMSRIKPEKYLA  306 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCHHHHHH
Confidence            334444555555667888999999987 6999999999999999999999999998  577887766543

>PTZ00207 hypothetical protein; Provisional

Probab=99.81  E-value=6.7e-19  Score=162.79  Aligned_cols=155  Identities=15%  Similarity=0.088  Sum_probs=125.7

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA------VNVYMLIFGRL  143 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~r~  143 (361)
                      .|++++++|++.++.+++.++. ....+.+++.|++.||+|||+++.++.+++.+++++++++      ++++.+++.|+
T Consensus        50 s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~  128 (591)
T PTZ00207         50 SGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG  128 (591)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence            4556788899999999988764 3455678889999999999999999999999999999987      68999999999


Q ss_pred             HHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHH-HHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-
Q 018042          144 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALA-ANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-  221 (361)
Q Consensus       144 l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-  221 (361)
                      +.|+|.+...+.....+.++|| ++||++.++...+.++|.++ +++...++.     .+|+..|++.++..++..+.. 
T Consensus       129 l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        129 LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997 78999999999999999975 444444433     258888887777776665544 


Q ss_pred             ccc--cCChhHH
Q 018042          222 LFL--PETPNSL  231 (361)
Q Consensus       222 ~~~--~es~~~~  231 (361)
                      +++  |+.+++.
T Consensus       203 ~~vr~p~~~~~~  214 (591)
T PTZ00207        203 VFMRLPPFHLTG  214 (591)
T ss_pred             hheeCCcchhhc
Confidence            333  4445543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=8e-20  Score=155.38  Aligned_cols=238  Identities=15%  Similarity=0.096  Sum_probs=186.1

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      ++.+-+++++|++.+...+...+.+++.|.+.||+|+|..+++|++++...++++++..+++++++.|.++|+|.+...+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            45566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCccc-ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHh
Q 018042          155 SVPLYLSEMAPARY-RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQ  233 (361)
Q Consensus       155 ~~~~~~~e~~~~~~-R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~  233 (361)
                      ...++++|.+|+++ |++++|+.-.+.++|..+||+.++.+.+..   |.+..|.+.+++.++-..+.+++-|..+    
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---Gk~aPFlVL~~v~Lld~~L~l~vi~p~~----  251 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---GKSAPFLVLAIVLLLDGALQLLVIEPTE----  251 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---CCcCcHHHHHHHHHHHHHHHHheeCccc----
Confidence            99999999999876 799999999999999999999999888664   7999999999998888777766433210    


Q ss_pred             hCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHH
Q 018042          234 RKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLF  313 (361)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (361)
                      .+                              +++..+..+++++++++.   +........++ ......+...++.++
T Consensus       252 ~~------------------------------~~~~~~~~~~~~Ll~dP~---I~~~agai~~~-n~~lafLePtlslwm  297 (464)
T KOG3764|consen  252 MD------------------------------PDSTEQGTPMWSLLMDPY---ILLIAGAITFS-NSSLAFLEPTLSLWM  297 (464)
T ss_pred             cC------------------------------ccccccCccHHHHHhCch---Hhhhhcchhhc-cchHHHhCcccHHHH
Confidence            00                              011222445666665532   22222222222 223344455555655


Q ss_pred             -HhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhcccee
Q 018042          314 -RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKL  355 (361)
Q Consensus       314 -~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~  355 (361)
                       ++...+..+.+..+....+.-.+|.-+.|.  +.||++..++
T Consensus       298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~--la~k~~~~~w  338 (464)
T KOG3764|consen  298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGK--LADKYPHLRW  338 (464)
T ss_pred             HHhccCCCcceeeeecccccchhccCchHHH--HHHhcCchhH
Confidence             455655558888888888899999999998  6999984333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.81  E-value=6.6e-19  Score=159.53  Aligned_cols=248  Identities=12%  Similarity=0.007  Sum_probs=159.4

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh---hh-----hhHHHHHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---AA-----VNVYMLIFGRLLL  145 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~~r~l~  145 (361)
                      ++++|.+..+.+++.+.+.++..+++++.|+++||+|||+.++.+++...++.....   +.     ......++.+++.
T Consensus        30 ~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (396)
T TIGR00882        30 HDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYL  109 (396)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            455688999999999999999999999999999999999999887766655443221   11     1233456678888


Q ss_pred             HhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-c
Q 018042          146 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-L  224 (361)
Q Consensus       146 G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~  224 (361)
                      |++.+...+....+..|..+  +++...+......++|..+++.+++.+..    .+||+.|++.++..++..+..++ .
T Consensus       110 g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~  183 (396)
T TIGR00882       110 GFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMFAK  183 (396)
T ss_pred             HHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHhC
Confidence            98888888888887777533  34556677777778899999988776643    37999999888777776655544 4


Q ss_pred             cCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhh
Q 018042          225 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  304 (361)
Q Consensus       225 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
                      ||+|+.        ++.++.    .+              .++++.+.++.++.++++..+...+   . .+.....+..
T Consensus       184 ~~~~~~--------~~~~~~----~~--------------~~~~~~~~~~~~~~l~~~~~~~~~l---~-~~~~~~~~~~  233 (396)
T TIGR00882       184 PKAPSS--------ATVANA----LG--------------ANASAFSLKLALELFRQRKFWMFVL---Y-VVGVACVYDV  233 (396)
T ss_pred             CCCchh--------hhhhcc----cc--------------cccCCCCHHHHHHHHcCCcHHHHHH---H-HHHHHHHHHH
Confidence            444321        000000    00              0000111123455555543222221   1 1111122233


Q ss_pred             hHHcHHHHHHhc----CCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          305 IAFYAPLLFRTI----GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       305 ~~~~~~~~~~~~----g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      ...+.+.++++.    +.+....+.......+...++.+..++  +.||+|||+.+.++
T Consensus       234 ~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~--l~~r~g~~~~l~~~  290 (396)
T TIGR00882       234 FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPL--IINRIGAKNALLIA  290 (396)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccchhHHHH
Confidence            444566666543    445556677777777777888888888  69999999987654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.81  E-value=5.5e-20  Score=168.52  Aligned_cols=274  Identities=16%  Similarity=0.207  Sum_probs=196.2

Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHhhh
Q 018042           71 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFG-RLLLGVGV  149 (361)
Q Consensus        71 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-r~l~G~~~  149 (361)
                      +.++++++.+.++++|+.++......+.+++.+.+.||+|.|.+.+.|.++..++.++.++++++|++++. -++.|+|.
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~  149 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL  149 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence            44577778899999999999999999999999999999999999999999999999999999999999887 79999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc-cCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-PETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-~es~  228 (361)
                      |..+.+....+..+|+ |+|+.+.++...+.++|.++-|.+...   ..+..|||+.+++.+.+.+-.++..... |.++
T Consensus       150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~---l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~  225 (509)
T KOG2504|consen  150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKY---LLSKYGWRGALLIFGGISLNVLVAGALLRPLSP  225 (509)
T ss_pred             hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHH---HHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999998776 679999999999999999988888444   4455689999988777765555544433 3222


Q ss_pred             hHHHhhCCCHHHHHHHH-------HHhhCC-c--chH---HHHHHHHHHHhhhh--hcccch----hhhcccCchhHHHH
Q 018042          229 NSLIQRKSDHQKAKLML-------QRVRGT-N--DVE---AEFDDLLKASSTAK--TINHPF----KKIIQRKYRPQLLM  289 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~-------~~~~~~-~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~  289 (361)
                      +......++.+......       ++.... +  ...   ...++.++..++..  ..+...    .+++++    +.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl  301 (509)
T KOG2504|consen  226 PKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----PKFL  301 (509)
T ss_pred             CCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----chHH
Confidence            11000000000000000       000000 0  000   00000000000000  001111    233333    6677


Q ss_pred             HHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccce
Q 018042          290 AMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK  354 (361)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~  354 (361)
                      ...+...+...++.....++|.+.++.|++..++..+.++.++..++|+++.|+  +.|+...++
T Consensus       302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~--laD~~~~~~  364 (509)
T KOG2504|consen  302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGL--LADKPGIRA  364 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhh--hcCccccch
Confidence            777777777788888999999999999999999999999999999999999999  599987443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.80  E-value=2.7e-18  Score=157.86  Aligned_cols=143  Identities=22%  Similarity=0.262  Sum_probs=117.2

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      .+|+| +.+...|+.+.+.++..++.++.|.++|.+|||++++.+.++..+|+++++.++|...++++..+.|+|.|...
T Consensus        71 ~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~  149 (599)
T PF06609_consen   71 NADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE  149 (599)
T ss_pred             HHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH
Confidence            33334 34667889999999999999999999999999999999999999999999999999999999999999987766


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                       .....++|..|.|+|+....+......+....++.++..+.   .+.+|||.|++.++...+.++..
T Consensus       150 -~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~---~~~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  150 -LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA---AHSGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             -HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc---cCCCcchHHHHHHHHHHHHHHHH
Confidence             45566899999999988777766665555556667755443   23589999999888777665544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.79  E-value=2.2e-18  Score=157.31  Aligned_cols=247  Identities=14%  Similarity=0.035  Sum_probs=146.5

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh---hhh-----hHHHHHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---AAV-----NVYMLIFGRLLL  145 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~~~~~r~l~  145 (361)
                      ++++|++..+.|++.+++.++..+++++.|+++||+|||++++++..+..++.....   .++     .....++++++.
T Consensus        38 ~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (420)
T PRK09528         38 HDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYL  117 (420)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455789999999999999999999999999999999999999887666554433211   111     111122333444


Q ss_pred             HhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc-
Q 018042          146 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-  224 (361)
Q Consensus       146 G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-  224 (361)
                      |.+.....+....+..+ . .++|++.++.......+|..+++++++.+..    .+|++.|++.++..++..+..++. 
T Consensus       118 ~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        118 GFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             hhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhccc
Confidence            43333333333333322 2 2456778888888889999999999877653    279999988887776666555554 


Q ss_pred             cCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhh
Q 018042          225 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  304 (361)
Q Consensus       225 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
                      +|.++....+++  ++          +              ++++...+..++.++++..+...+.......    ....
T Consensus       192 ~~~~~~~~~~~~--~~----------~--------------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~----~~~~  241 (420)
T PRK09528        192 PDAPSTAKVANA--LG----------A--------------NASAVSLKDALALLKLPKFWFLVLYVIGVAC----FYDV  241 (420)
T ss_pred             ccccchhhhccc--hh----------c--------------ccccccHHHHHHHccCCCeEeehHHHHHHHH----HHHH
Confidence            343221000000  00          0              0000001122334444332222221111111    1122


Q ss_pred             hHHcHHHHHH----hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          305 IAFYAPLLFR----TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       305 ~~~~~~~~~~----~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      ...+.|.++.    +.+.+....+.......++..++.++.++  +.||+|+|+.+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~~~~  297 (420)
T PRK09528        242 FDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPF--IINRIGAKNALLL  297 (420)
T ss_pred             HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcchhhHH
Confidence            3334455443    23566667778888888888899999999  6999999987654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.78  E-value=3.4e-19  Score=163.60  Aligned_cols=251  Identities=12%  Similarity=0.124  Sum_probs=166.0

Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh----hchh-HHHHHHHHHHHHHHHHhhhhhh------HHHHHH
Q 018042           72 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRK-PSVLMGGAAFLAGSALGGAAVN------VYMLIF  140 (361)
Q Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~  140 (361)
                      .+.+++|++..+.|++.++..+..++..|+.|+++||    +||| +.++.+.....++.+++...++      ...+++
T Consensus        25 ~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  104 (437)
T TIGR00792        25 FYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYI  104 (437)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            3466779999999999999999999999999999998    6874 4667788888888777766553      456667


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhcC-CcccccchhhHHHHHHHHHHHHHHHHHhhhcc-c---CCCcchHHHHHhhHHHHH
Q 018042          141 GRLLLGVGVGFANQSVPLYLSEMA-PARYRGAINNGFQFSIGIGALAANFINYGTEQ-I---KGGWGWRVSLALAAVPAS  215 (361)
Q Consensus       141 ~r~l~G~~~~~~~~~~~~~~~e~~-~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~-~---~~~~~wr~~~~~~~~~~~  215 (361)
                      .+++.+++.+....+..++..|.. ++++|++..++.+.+..+|..+++.+...+.. .   .+..+||+.+.+.+++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~  184 (437)
T TIGR00792       105 TYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGV  184 (437)
T ss_pred             HHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHH
Confidence            788889988888888888889987 46889999998888888877666554333321 1   234589999988888777


Q ss_pred             HHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHH
Q 018042          216 ILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIP  294 (361)
Q Consensus       216 ~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (361)
                      +..+.. ++.||+++.    .+ .++                         +++.+.++.++++++++....    ..+.
T Consensus       185 ~~~~~~~~~~~e~~~~----~~-~~~-------------------------~~~~~~~~~~~~l~~~~~~~~----~~~~  230 (437)
T TIGR00792       185 VSLIICFFGTKERYSE----IP-KNI-------------------------EKKLSLKQIFKALFKNDQLLI----LCLA  230 (437)
T ss_pred             HHHHHHHcCCEecCCC----CC-ccc-------------------------ccCCCHHHHHHHHhCCHHHHH----HHHH
Confidence            666554 557775410    00 000                         000001112344444432222    2222


Q ss_pred             HHHHhcchhhhHHcHHHHHHhc-CCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          295 FFQQVTGINVIAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .+...........+.+++.+.. + +....+.+.....++.+++.++.++  ++||+|+|+++..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~--l~~r~g~~~~~~~~  293 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPR--LVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcHHHHHHH
Confidence            2222223333334445554432 4 4455566666778888899999998  69999999876554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.76  E-value=3.9e-17  Score=150.74  Aligned_cols=137  Identities=16%  Similarity=0.169  Sum_probs=120.7

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh-hchhHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYM-LIFGRLLLGVGVGF  151 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~~~  151 (361)
                      ++++|++.++.+++.+.+.....+..+++|+++|| +|||++++.+.+++.++.++++++++... ++++|+++|+|.|.
T Consensus        42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~  121 (489)
T PRK10207         42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGL  121 (489)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccc
Confidence            55678899999999999998888889999999999 99999999999999999999998876544 45789999999999


Q ss_pred             hhhHHHHHHHhcCCccc--ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHH
Q 018042          152 ANQSVPLYLSEMAPARY--RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVP  213 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~  213 (361)
                      ..+...++++|.+|+++  |..+.+++..+.++|..++|.+++.+.+.   .|||+.|++.++.
T Consensus       122 ~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~---~gw~~~F~i~~i~  182 (489)
T PRK10207        122 FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK---FGYSVTYNLCGAG  182 (489)
T ss_pred             ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH
Confidence            99999999999998874  57789999999999999999998887754   4799999886543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.76  E-value=1.2e-17  Score=151.77  Aligned_cols=243  Identities=10%  Similarity=0.014  Sum_probs=155.0

Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhch-hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 018042           72 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR-KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  150 (361)
                      .+++++|++.+++|++.+++.++..+++++.|.++||+|| |+++.++.++..++..+..+.++++.+.+.|++.|++.+
T Consensus        28 ~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  107 (418)
T TIGR00889        28 YMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYM  107 (418)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHc
Confidence            3466779999999999999999999999999999999965 778888888888888888888999999999999999877


Q ss_pred             hhhhHHHHHHH--------hcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          151 FANQSVPLYLS--------EMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       151 ~~~~~~~~~~~--------e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      ...+...++..        |......|.+..+      .+|.++++.+++.+..   ...|+. |++.++..++..+..+
T Consensus       108 ~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~---~~~~~~-f~~~~~~~~~~~~~~~  177 (418)
T TIGR00889       108 PTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI---ELSNIQ-LYITAGSSALLGVFAL  177 (418)
T ss_pred             cHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc---cchhHH-HHHHHHHHHHHHHHHh
Confidence            66665554432        2222223444444      2566667777655522   124654 4444444455555556


Q ss_pred             cccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcch
Q 018042          223 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGI  302 (361)
Q Consensus       223 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (361)
                      ++||+|+.   +++ + +           .+.            . +..+.+.++.+|++.....++...+    .....
T Consensus       178 ~~~e~~~~---~~~-~-~-----------~~~------------~-~~~~~~~~~~~k~~~~~~~~~~~~~----~~~~~  224 (418)
T TIGR00889       178 TLPDIPVA---KST-A-K-----------MSI------------K-VMLGLDAFILFKNKRMAIFFFFSML----LGAPL  224 (418)
T ss_pred             cCCCCCCC---ccc-c-c-----------cCH------------H-HHhhhhHHHHhcCCCeeeHHHHHHH----HHhHH
Confidence            68887531   000 0 0           000            0 0001122334444332222222111    11122


Q ss_pred             hhhHHcHHHHHHhcCCCC--------hhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          303 NVIAFYAPLLFRTIGLGR--------LKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       303 ~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .....+.+.++++.|.++        +..+.......+..+++.+..++  ++||+|||+++..+
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~--l~dr~g~r~~l~~~  287 (418)
T TIGR00889       225 QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPF--FLKRFGIKKVMLLS  287 (418)
T ss_pred             HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHhCcHHHHHHH
Confidence            334456677777666543        55678888888888899999998  69999999887654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.74  E-value=4.9e-17  Score=151.16  Aligned_cols=183  Identities=19%  Similarity=0.185  Sum_probs=131.1

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSAL---GGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      +++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.   ...+++...+++++++.|++.+.
T Consensus       279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  358 (490)
T PRK10642        279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC  358 (490)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            344667777777788888999999999999999999999988877654433322   22345577778889999988887


Q ss_pred             hhhHHHHHHHhcCCcccccchhhH-HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhH
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  230 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  230 (361)
                      ..+....++.|.+|++.|+++++. ++.+. ++..++|.+...+....  .+|+..+++..++.++..+..+++||+|++
T Consensus       359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~~~  435 (490)
T PRK10642        359 FTGVMASTLPAMFPTHIRYSALAAAFNISV-LVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHCCCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            777888899999999999999997 55544 44456666655444322  257777766666666666666778999998


Q ss_pred             HHhh----CCCHHHHHHHHHHhhCCcchHHHHHHHH
Q 018042          231 LIQR----KSDHQKAKLMLQRVRGTNDVEAEFDDLL  262 (361)
Q Consensus       231 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (361)
                      +.++    +.+.||+++.+++++.  +.+++.++++
T Consensus       436 ~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~i~  469 (490)
T PRK10642        436 PLKGATPAASDIQEAKEILVEHYD--NIEQKIDDID  469 (490)
T ss_pred             CCCCccccccchhhHHHHhhcccc--cccchhhhcc
Confidence            7754    2337888888887763  3344444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.71  E-value=4.9e-16  Score=143.36  Aligned_cols=140  Identities=18%  Similarity=0.246  Sum_probs=125.7

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh-hchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      +|++..+.+.+.+.+.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|++.|...+.
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~  122 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN  122 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence            78899999999999999999999999999999 89999999999999999999999999889999999999999999999


Q ss_pred             HHHHHHhcCCccc---ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHH
Q 018042          156 VPLYLSEMAPARY---RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  219 (361)
Q Consensus       156 ~~~~~~e~~~~~~---R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  219 (361)
                      ..++++|++|+++   |+.+.++++.+.++|..+++.+++.+.+   +.+|++.|.+.++..++..+
T Consensus       123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~---~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE---NYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHHH
Confidence            9999999998765   8889999999999999999999877764   34799999887755444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.70  E-value=1.6e-16  Score=143.60  Aligned_cols=247  Identities=12%  Similarity=-0.007  Sum_probs=159.2

Q ss_pred             ccccccccCCchhHHHHH--HHHHHHHHHHHHhh-HHHHHhhchhHHHHHHHHHH-HHHHHHhh---hhhh-HHHHHHHH
Q 018042           71 TKISNYCKFDSQLLTSFT--SSLYVAGLVASFVA-SSVTRAFGRKPSVLMGGAAF-LAGSALGG---AAVN-VYMLIFGR  142 (361)
Q Consensus        71 ~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~Grr~~l~~~~~~~-~~~~~~~~---~~~~-~~~~~~~r  142 (361)
                      |...++.|.+.+++|.+.  +...+...+.+++. ++..||+|||+..++.+.+. .+.....+   ...+ ...++..-
T Consensus        25 p~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (390)
T TIGR02718        25 PTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLL  104 (390)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            334555688999999974  55567777777777 55789999999876655332 21122222   2222 33444555


Q ss_pred             HHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          143 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       143 ~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      ++.++..+...+....+..|..++++++...+....+..+|.++++.....+.+   +.+||..|++.++..++..+..+
T Consensus       105 ~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~---~~gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       105 ACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG---KFGQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHH
Confidence            666677777888888888999988888888888888888898888877555543   34899999998887776665555


Q ss_pred             cccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcch
Q 018042          223 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGI  302 (361)
Q Consensus       223 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (361)
                      +++|+++.   +++ .++                             +...+.++.++++..+.......+    .....
T Consensus       182 ~~~~~~~~---~~~-~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~~~l----~~~~~  224 (390)
T TIGR02718       182 WLKDRAVA---SPE-APL-----------------------------ARRASLFRFFRRPLAWSLLALALL----SAMTA  224 (390)
T ss_pred             HcCCCCcC---ccc-cch-----------------------------hhHHHHHHHHcCcCHHHHHHHHHH----HHHHH
Confidence            55443210   000 000                             001134455555443333322222    22223


Q ss_pred             hhhHHcHHHHHHhcCCCChhhHHHhhhhh-hcccccccchhhHHHHhhhccceeeccc
Q 018042          303 NVIAFYAPLLFRTIGLGRLKVCQLSKWIE-CGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       303 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .....+.+.++++.|++.++.+....... ...+++.++.++  +.||+|+|+.+..+
T Consensus       225 ~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~--l~~r~g~~~~l~~~  280 (390)
T TIGR02718       225 VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAW--LVRRAGLWRTFILG  280 (390)
T ss_pred             HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHH
Confidence            34455667777788999999999887765 466778889999  69999999876543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=9.1e-16  Score=133.26  Aligned_cols=279  Identities=10%  Similarity=0.045  Sum_probs=193.2

Q ss_pred             cchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHH
Q 018042           20 KITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVAS   99 (361)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (361)
                      +..+++|+++.++++-.+..++....+++.                    .+..++.|| +.+..-|++.+|.+.+....
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i--------------------~n~~~~~Yg-s~~~~~wlsmIym~v~vp~g   96 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPI--------------------NNYVNSFYG-SSSAADWLSMIYMVVSVPFG   96 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhH--------------------HHHHHHHhc-chHHHHHHHHHHHHHHHHHh
Confidence            567789999998888887777766555444                    222244456 67778899999999999999


Q ss_pred             HhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh------hhHH--HHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccc
Q 018042          100 FVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA------VNVY--MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA  171 (361)
Q Consensus       100 ~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~  171 (361)
                      +++-|+.||+|-|..++++..+.++++.+-..+      +.++  ....+..+.+.++-.....-.....-||++++|..
T Consensus        97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~  176 (480)
T KOG2563|consen   97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI  176 (480)
T ss_pred             hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence            999999999999999999999999999988775      3345  66678889988887777666678889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcccC---CCcchHHH--HHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHH
Q 018042          172 INNGFQFSIGIGALAANFINYGTEQIK---GGWGWRVS--LALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLML  245 (361)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~wr~~--~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~  245 (361)
                      +..+-..+..+|.+++.++...+....   ++..|...  |+....+..+.+++. +..++.|+......+      .  
T Consensus       177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~------~--  248 (480)
T KOG2563|consen  177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQ------A--  248 (480)
T ss_pred             hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhH------h--
Confidence            999888888888888888766666543   33466553  443333333333333 334444422111100      0  


Q ss_pred             HHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHH
Q 018042          246 QRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQ  325 (361)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  325 (361)
                                         .+.+....++.++.+++    +.++...+.+......++.+...+...+...|++...++.
T Consensus       249 -------------------~~~~~~f~~si~~~~~n----~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~  305 (480)
T KOG2563|consen  249 -------------------ALQDASFPKSIKSCFKN----RQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGY  305 (480)
T ss_pred             -------------------hhhcCcHHHHHHHHHcC----ccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccch
Confidence                               00011123455666655    3333344445545555555555555444445888889999


Q ss_pred             HhhhhhhcccccccchhhHHHHhhhcc
Q 018042          326 LSKWIECGGSIGFGRNMWVKWMNRVRW  352 (361)
Q Consensus       326 ~~~~~~~~~~~g~~~~~~~~l~dr~gr  352 (361)
                      ......+++++|+++.|.  +.||.+.
T Consensus       306 ig~l~iv~Gmlga~~~gi--i~Dktk~  330 (480)
T KOG2563|consen  306 IGALMIVAGMLGALASGI--IADKTKK  330 (480)
T ss_pred             hHHHHHHHHHHHHHHHHh--hhhhhhh
Confidence            999999999999999999  5999865

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.68  E-value=9.5e-16  Score=141.43  Aligned_cols=241  Identities=15%  Similarity=0.144  Sum_probs=170.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHhhhhhhhh
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      |+...+++..+..+-..+.++++|.++||+.||++++.+.++..+..+..++.     .+++.+++.-++.|++.+...|
T Consensus        43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P  122 (524)
T PF05977_consen   43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP  122 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999999999999999999999999999999988776655544432     4788899999999999999999


Q ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhh
Q 018042          155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR  234 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~  234 (361)
                      ...+++.|..|+++...++++.+...++..++||.+++.+....   |-.+.|.+.++..++........+..++   .+
T Consensus       123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~---G~~~~f~inalsfl~~i~~l~~~~~~~~---~~  196 (524)
T PF05977_consen  123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF---GAAAAFLINALSFLISILALLRWKPPPP---PS  196 (524)
T ss_pred             HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcccccc---cc
Confidence            99999999999999999999999999999999999988776543   5677787776655544433333332210   00


Q ss_pred             CCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH
Q 018042          235 KSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR  314 (361)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (361)
                      +. .+|  ..                       .+..+..++.+.+++..+..++...+..   +. ...+...+|.+.+
T Consensus       197 ~~-~~e--~~-----------------------~~~l~~G~ryv~~~~~l~~~l~~~~~~~---l~-~~a~~aLlPl~a~  246 (524)
T PF05977_consen  197 SL-PRE--RF-----------------------FSALREGLRYVRSSPPLRSVLLRSFLFN---LF-ASAVWALLPLFAR  246 (524)
T ss_pred             cc-chh--hh-----------------------hhhHHHHHHHHhcchHHHHHHHHHHHHH---Hh-hhHHHHhhhHHHH
Confidence            00 000  00                       0001223333333332222222111111   11 1234455788875


Q ss_pred             -hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          315 -TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       315 -~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                       ..|.++...+++....++|.++|.++.+.  +.+|+++++++..
T Consensus       247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~--l~~~~~~~~lv~~  289 (524)
T PF05977_consen  247 DVLGGGASGYGLLLAAFGVGAILGALLLPR--LRRRLSSRRLVLL  289 (524)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCcchhhHH
Confidence             45899999999999999999999999998  5788877766543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.67  E-value=1.8e-15  Score=137.31  Aligned_cols=154  Identities=18%  Similarity=0.209  Sum_probs=118.6

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHH----hhchhHHHHHH-HHHHHHHHHHhhhhhhHH-------------
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR----AFGRKPSVLMG-GAAFLAGSALGGAAVNVY-------------  136 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grr~~l~~~-~~~~~~~~~~~~~~~~~~-------------  136 (361)
                      +++|.+..+.+++..+..+...+.+++.|+++|    |+|||+.++.+ .+...++.++.+++++.+             
T Consensus        32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~  111 (477)
T TIGR01301        32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP  111 (477)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence            446889999999999999999999999999999    59999998874 666666667777766542             


Q ss_pred             ----HHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccc--cchhhHHHHHHHHHHHHHHHHHhhhc--cc----CCC----
Q 018042          137 ----MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYR--GAINNGFQFSIGIGALAANFINYGTE--QI----KGG----  200 (361)
Q Consensus       137 ----~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R--~~~~~~~~~~~~~g~~~~~~~~~~~~--~~----~~~----  200 (361)
                          .++++-.+..++.....++..++++|.+|+++|  +.+.++.+...++|.++++.+++...  ..    ...    
T Consensus       112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~  191 (477)
T TIGR01301       112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGV  191 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccc
Confidence                333344455567888888999999999998876  57899999999999999999887641  11    000    


Q ss_pred             --cchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          201 --WGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       201 --~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                        .+.|+.|++.++..++..+.. ++.+|.|
T Consensus       192 ~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       192 SCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence              267889998887777666555 5588876

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.63  E-value=4.8e-15  Score=113.49  Aligned_cols=135  Identities=27%  Similarity=0.392  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCccc
Q 018042           89 SSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY  168 (361)
Q Consensus        89 ~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~  168 (361)
                      +.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            34567888999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-ccC
Q 018042          169 RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  226 (361)
Q Consensus       169 R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  226 (361)
                      |++..++.+....+|..+++.+...+.+   ..+|++.+++.+...++..+..++ .||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQ---FLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhc---ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999776653   347999998887776666555543 555

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.62  E-value=4.5e-17  Score=150.66  Aligned_cols=274  Identities=15%  Similarity=0.172  Sum_probs=3.0

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----------------
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----------------  132 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----------------  132 (361)
                      .+.+++.|++++++.|++.+.+-++..+..++..++.+|..|-+.+-.|.++.+++++++++-                 
T Consensus        26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~  105 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG  105 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence            667899999999999999999999999999999999999888889999999999999887751                 


Q ss_pred             --------h-------------------------hHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHH
Q 018042          133 --------V-------------------------NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFS  179 (361)
Q Consensus       133 --------~-------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~  179 (361)
                              -                         -++.+++++++.|+|....++...+|+-|..++++-+..+++..+.
T Consensus       106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~  185 (539)
T PF03137_consen  106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM  185 (539)
T ss_dssp             ----------------------------------------------SSS-------------------------------
T ss_pred             ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence                    0                         1356778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCC---------------Cc----chHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHH
Q 018042          180 IGIGALAANFINYGTEQIKG---------------GW----GWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK  240 (361)
Q Consensus       180 ~~~g~~~~~~~~~~~~~~~~---------------~~----~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~  240 (361)
                      ..+|.++|.++++...+...               +.    .|-.-|++.++..++..+..+++|+..+...+.+   ++
T Consensus       186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~---~~  262 (539)
T PF03137_consen  186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQ---EE  262 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCccccc---ch
Confidence            99999999999876664311               01    2555566666666666666666665532110000   00


Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCC
Q 018042          241 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLG  319 (361)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s  319 (361)
                      ++....+.  ++..+++.++.+ ......+..+.+...+++..++++++...+...........+..+.|.|++ +++.+
T Consensus       263 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~s  339 (539)
T PF03137_consen  263 KESSERKE--EDSDKDSFKDPK-SKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLS  339 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhcch--hhhhhhcccccc-cccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            00000000  000000000000 000000111223333345566688888888888888888999999999996 56999


Q ss_pred             ChhhHHHhhhhhh-cccccccchhhHHHHhhhc
Q 018042          320 RLKVCQLSKWIEC-GGSIGFGRNMWVKWMNRVR  351 (361)
Q Consensus       320 ~~~~~~~~~~~~~-~~~~g~~~~~~~~l~dr~g  351 (361)
                      ++.+..+.....+ +..+|.+++|+  +++|+.
T Consensus       340 as~A~~l~G~v~ip~~~~G~llGG~--ivkk~k  370 (539)
T PF03137_consen  340 ASQASLLTGIVSIPGAALGILLGGY--IVKKFK  370 (539)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHhhhhcchhheehheEEE--EEEEec
Confidence            9988888766544 67789999998  588774

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.61  E-value=3.5e-14  Score=126.81  Aligned_cols=190  Identities=16%  Similarity=0.165  Sum_probs=142.2

Q ss_pred             CcchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHH
Q 018042           19 GKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVA   98 (361)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   98 (361)
                      ++.+|+...++.   +..++.+...+++.+.  +.+|.+..                |.+.+.+..|++.++..++.+++
T Consensus        29 ~~t~wrsi~l~~---~~sfl~~v~~sI~~~s--~wpYl~~l----------------D~~A~~~ffG~viaa~slg~~i~   87 (488)
T KOG2325|consen   29 RKTNWRSIYLAL---LNSFLVAVQFSIYLTS--MWPYLQKL----------------DPTATATFFGLVIAASSLGHAIF   87 (488)
T ss_pred             cCCchHhHHHHH---HHHHHHhhhheEEEee--cchhhhhc----------------CCCCCcchhhHHHHHHHHHHHhc
Confidence            334444444333   4456667777666444  33444332                33558889999999999999999


Q ss_pred             HHhhHHHHHhhch-hHHHHHHHHHHHHHHHHh-hhh---h-hHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccch
Q 018042           99 SFVASSVTRAFGR-KPSVLMGGAAFLAGSALG-GAA---V-NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAI  172 (361)
Q Consensus        99 ~~~~g~l~d~~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~  172 (361)
                      ++..|+++.|.+. |+.++.|.++..+++++. ++.   + ..+.++++|++.|+|.|. ....-.|+++....++|.++
T Consensus        88 ~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA  166 (488)
T KOG2325|consen   88 SLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRA  166 (488)
T ss_pred             chhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHH
Confidence            9999999999986 788899999999999988 332   3 678899999999999664 56888999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcccCCC----------cchHHHHHhhHHHHHHHHHhc-ccccCChhH
Q 018042          173 NNGFQFSIGIGALAANFINYGTEQIKGG----------WGWRVSLALAAVPASILTLGA-LFLPETPNS  230 (361)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~  230 (361)
                      ++....+..+|.++||.++..+..+.+.          .-+..+-|+.++..++.++.. .+++|.++.
T Consensus       167 ~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  167 FAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            9999999999999999998877765421          123345567777777666655 457887653

>PRK09669 putative symporter YagG; Provisional

Probab=99.61  E-value=1.8e-15  Score=139.00  Aligned_cols=247  Identities=11%  Similarity=0.035  Sum_probs=149.8

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh----hchh-HHHHHHHHHHHHHHHHhhhhhh------HHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRK-PSVLMGGAAFLAGSALGGAAVN------VYMLIFGR  142 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r  142 (361)
                      .+++|++..+.|.+.++..+..++..|+.|+++||    +||| +.++.+.+..++...+....++      .+.+++..
T Consensus        37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~  116 (444)
T PRK09669         37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY  116 (444)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            45579999999999999999999999999999999    7874 5556677777666655444432      45556666


Q ss_pred             HHHHhhhhhhhhHHHHHHHhcC-CcccccchhhHHHHHHHHHHHHHHHHHhhhccc----CCCcchHHHHHhhHHHHHHH
Q 018042          143 LLLGVGVGFANQSVPLYLSEMA-PARYRGAINNGFQFSIGIGALAANFINYGTEQI----KGGWGWRVSLALAAVPASIL  217 (361)
Q Consensus       143 ~l~G~~~~~~~~~~~~~~~e~~-~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~wr~~~~~~~~~~~~~  217 (361)
                      ++.+.+......+..++.+|+. ++++|.+..+....+..+|..+++.+...+...    ..+.+|+..+.+.+++..+.
T Consensus       117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~  196 (444)
T PRK09669        117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL  196 (444)
T ss_pred             HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            6777777777778889999998 557899888887777777766665543322211    22358998888877776665


Q ss_pred             HHhcc-cccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHH
Q 018042          218 TLGAL-FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFF  296 (361)
Q Consensus       218 ~~~~~-~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (361)
                      .+..+ ..+|.++.    ++                             +++.+.+++.++.++++..+..+....+.  
T Consensus       197 ~~~~~~~~~e~~~~----~~-----------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~--  241 (444)
T PRK09669        197 FFCCFFMTKERYTP----EV-----------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVL--  241 (444)
T ss_pred             HHHHhCCeEEecCC----CC-----------------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHH--
Confidence            55443 35553210    00                             00000122344555554433332222211  


Q ss_pred             HHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          297 QQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                        ...........+++.+..--+.+....+.....+..+++.++.++  ++||+|+|+.+..+
T Consensus       242 --~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~--l~~r~gk~~~~~~~  300 (444)
T PRK09669        242 --LTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSER--LLGKFDRVRAFKWT  300 (444)
T ss_pred             --HHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhChHHHHHHH
Confidence              111122222223333222112233334444555667778888888  69999999876543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.61  E-value=2.4e-14  Score=132.95  Aligned_cols=141  Identities=18%  Similarity=0.188  Sum_probs=117.0

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh-hchhHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~  151 (361)
                      ++++|++.++.++..+.+........++.|+++|| +|||+++..+.++..++.+++++++ +.+.+.++|++.|++.|.
T Consensus        49 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~  128 (500)
T PRK09584         49 VKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGL  128 (500)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhc
Confidence            55678899888888888776666667899999999 5999999999999999999888874 456677889999999999


Q ss_pred             hhhHHHHHHHhcCCccc--ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHH
Q 018042          152 ANQSVPLYLSEMAPARY--RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  217 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  217 (361)
                      ..+...++++|++|+++  |..+.++++.+.++|..++|.+++.+.+   +.|||+.|.+.++...+.
T Consensus       129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~---~~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA---KYGWSVAFALSVVGMLIT  193 (500)
T ss_pred             ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHHH
Confidence            88999999999998654  4457888899999999999999887764   348999999877544443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.61  E-value=1.8e-15  Score=138.47  Aligned_cols=249  Identities=14%  Similarity=0.145  Sum_probs=170.3

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHH----hhchhHHH-HHHHHHHHHHHHHhhhh-h-------hHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR----AFGRKPSV-LMGGAAFLAGSALGGAA-V-------NVYMLIF  140 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grr~~l-~~~~~~~~~~~~~~~~~-~-------~~~~~~~  140 (361)
                      .+.+|+++...+.+..+.-+..++..|+.|.++|    |+|||+.+ +++.+..+++.++.... |       ....+.+
T Consensus        29 ~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~  108 (428)
T PF13347_consen   29 TDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFV  108 (428)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Confidence            4445889999999999999999999999999999    89977554 56777788877777655 4       2234566


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhcCC-cccccchhhHHHHHHHHHHHHHHHHHhhhcccCC---C-cchHHHHHhhHHHHH
Q 018042          141 GRLLLGVGVGFANQSVPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIKG---G-WGWRVSLALAAVPAS  215 (361)
Q Consensus       141 ~r~l~G~~~~~~~~~~~~~~~e~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~-~~wr~~~~~~~~~~~  215 (361)
                      ..++..++......+..++..|..+ +++|.+..+.-..+..+|..+...+...+....+   . .+|++...+.+++.+
T Consensus       109 ~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~  188 (428)
T PF13347_consen  109 FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL  188 (428)
T ss_pred             HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence            6777799999999999999999998 4689999999888888888655555443333222   1 279999988888877


Q ss_pred             HHHHhccc-ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHH
Q 018042          216 ILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIP  294 (361)
Q Consensus       216 ~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (361)
                      +..+...+ .+|.++      + .+                        +++++.+.++.++++++++....    ....
T Consensus       189 v~~~i~~~~~ke~~~------~-~~------------------------~~~~~~~~~~~~~~~~~nr~~~~----l~~~  233 (428)
T PF13347_consen  189 VFFLITFFFVKERSV------E-VT------------------------EQEKKISLRDSLRSLFRNRPFRI----LLLA  233 (428)
T ss_pred             HHhhhhhheeeeccc------c-cc------------------------ccccccccccchhhhcccchHHH----HHHH
Confidence            76666544 677211      0 00                        00111122334555555543333    3333


Q ss_pred             HHHHhcchhhhHHcHHHHHHhc-CCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecccC
Q 018042          295 FFQQVTGINVIAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  360 (361)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~~  360 (361)
                      .+.............+++.+.. |.+ ...+.......++.+++.++.++  ++||+|+|+.+..+.
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~--l~~r~gk~~~~~~~~  297 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGR--LSKRFGKKKVYIIGL  297 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHH--HHHHccceeehhhhH
Confidence            3333344455555666666554 544 45566677778888899999998  699999999887654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.60  E-value=5.6e-15  Score=136.71  Aligned_cols=251  Identities=12%  Similarity=0.048  Sum_probs=152.2

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHH----hhch-hHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR----AFGR-KPSVLMGGAAFLAGSALGGAAV------NVYMLIFGR  142 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~r  142 (361)
                      .+.+|++...+|.+..+.-+.-++..|+.|.++|    |+|| |+.++.+.+..+++..+....+      .+..+.+..
T Consensus        34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~  113 (473)
T PRK10429         34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY  113 (473)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence            3446889999999999999999999999999999    6798 5666678777777765554322      133455556


Q ss_pred             HHHHhhhhhhhhHHHHHHHhcC-CcccccchhhHHHHHHHHHHHHHHHHHhhh----cccCCCcchHHHHHhhHHHHHHH
Q 018042          143 LLLGVGVGFANQSVPLYLSEMA-PARYRGAINNGFQFSIGIGALAANFINYGT----EQIKGGWGWRVSLALAAVPASIL  217 (361)
Q Consensus       143 ~l~G~~~~~~~~~~~~~~~e~~-~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~wr~~~~~~~~~~~~~  217 (361)
                      ++.+++......+..++..|+. ++++|.+..++-..+..+|..+.+.+...+    ....+..+|+....+.+++.++.
T Consensus       114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~  193 (473)
T PRK10429        114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS  193 (473)
T ss_pred             HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            7778888888888999999998 688999988886666666654444432211    11122236888777776666654


Q ss_pred             HHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHH
Q 018042          218 TLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFF  296 (361)
Q Consensus       218 ~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (361)
                      .+.. +..+|.+..    ++  ++                          .+++++.++++.++...+++.+.......+
T Consensus       194 ~~~~~~~~~e~~~~----~~--~~--------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~  241 (473)
T PRK10429        194 TIITLRNVHEVYSS----DN--QV--------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGMAL  241 (473)
T ss_pred             HHHHHcCceecCCc----cc--cc--------------------------cccccCCCHHHHHHHHhcCHHHHHHHHHHH
Confidence            4444 336664310    00  00                          000011223333221111122222222222


Q ss_pred             HHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          297 QQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      ...........+.+++.+...-+....+.+.....++.+++.++.++  +.||+|+|+.+.+
T Consensus       242 ~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~--l~~r~gkk~~~~~  301 (473)
T PRK10429        242 AYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPR--LVKSLSRRILWAG  301 (473)
T ss_pred             HHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCcHHHHHH
Confidence            22233344444555555443334444555556666778888888888  6999999988754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.57  E-value=5.2e-14  Score=134.46  Aligned_cols=141  Identities=16%  Similarity=-0.014  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhc
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEM  163 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~  163 (361)
                      ......+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++.+++.|++.+..++...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677789999999999999999999999999999999999999998888888889999998888899999999999


Q ss_pred             CCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 018042          164 APARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  228 (361)
Q Consensus       164 ~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  228 (361)
                      +|++.|++++++......+|.+++|.+++.+...    +...+|++.+++.++..++.+++||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999997755432    345677777777777666667789874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.57  E-value=1.5e-14  Score=133.14  Aligned_cols=265  Identities=11%  Similarity=-0.006  Sum_probs=161.1

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-----hhHHHHHHHHHHH-HHHHHhhhhhhHHHH-HHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-----RKPSVLMGGAAFL-AGSALGGAAVNVYML-IFGR  142 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~r  142 (361)
                      .|-+++++|++.++++...+...+...+-.+ +|+++||++     ||+.++++.++.. +.....+..++.... .+..
T Consensus        49 ~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  127 (468)
T TIGR00788        49 SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI  127 (468)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            3445667899999999999999999998665 999999998     7787788776663 444444444554444 4478


Q ss_pred             HHHHhhhhhhhhHHHHHHHhcCCcccccchhh---HHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHH
Q 018042          143 LLLGVGVGFANQSVPLYLSEMAPARYRGAINN---GFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  219 (361)
Q Consensus       143 ~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  219 (361)
                      ++.+++.+......-++..|..+ +++....+   .......+|.++++.+++.+.+.   .+||..|++.+...++..+
T Consensus       128 ~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       128 FLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQLF  203 (468)
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999998 55544333   33333457888888887766643   4799999988877777755


Q ss_pred             hcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHh
Q 018042          220 GALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQV  299 (361)
Q Consensus       220 ~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (361)
                      ..++++|++.....+.  .++.......        ......    +..++......+.++++..++.+....+.+. . 
T Consensus       204 ~~~~~~E~~~~~~~~~--~~~~~~~~~~--------~~~~~~----~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~-  267 (468)
T TIGR00788       204 VSNLSKERRAFVRPRI--GTYLEMNMAL--------LTLGVL----ANVKVQILGLRGAIQLLEIAKPLIFIFLSYA-N-  267 (468)
T ss_pred             HHHhcccccccccccc--cccchhhhhh--------hhhhHH----HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-h-
Confidence            5566788631100000  0000000000        000000    0000001122223333222221221111011 1 


Q ss_pred             cchhhhHH-cHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          300 TGINVIAF-YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       300 ~~~~~~~~-~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                       ....... +. ...+..|+++...+.......++.++|....+.  +.+|++.|+++.++
T Consensus       268 -~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~--~~~~~~~r~~l~~~  324 (468)
T TIGR00788       268 -LPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDR--FLKTFPYRLLFGVT  324 (468)
T ss_pred             -cCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHH
Confidence             1111111 11 111356999999999999999999999999998  57899988876544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.56  E-value=3.7e-15  Score=138.29  Aligned_cols=265  Identities=15%  Similarity=0.167  Sum_probs=194.3

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----------------
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----------------  132 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----------------  132 (361)
                      ...+++.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|++++++++++.++-                 
T Consensus       120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~  199 (735)
T KOG3626|consen  120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS  199 (735)
T ss_pred             hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence            667799999999999999999999999999999999999999999999999999999988761                 


Q ss_pred             ---h-------------------------------hHH-HHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHH
Q 018042          133 ---V-------------------------------NVY-MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQ  177 (361)
Q Consensus       133 ---~-------------------------------~~~-~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~  177 (361)
                         +                               .++ .++++.++.|+|....++...+|+-|...+++-+..+++..
T Consensus       200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~  279 (735)
T KOG3626|consen  200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY  279 (735)
T ss_pred             ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence               0                               023 56667999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCc----------------chHHHHHhhHHHHHHHHHhcccccCChhHHHhhCCCHHHH
Q 018042          178 FSIGIGALAANFINYGTEQIKGGW----------------GWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKA  241 (361)
Q Consensus       178 ~~~~~g~~~~~~~~~~~~~~~~~~----------------~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~  241 (361)
                      ....+|.++|.+++.+..++..+.                .|..-|++.+.+.++..+..+++|...+...++   +++.
T Consensus       280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~---~~~~  356 (735)
T KOG3626|consen  280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR---KRAR  356 (735)
T ss_pred             HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc---chhh
Confidence            999999999999988877532211                466667778887777777777777654211100   0000


Q ss_pred             HHHHHHhhCCcchHHHHHHHHHHHhhhhhccc---chhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcC
Q 018042          242 KLMLQRVRGTNDVEAEFDDLLKASSTAKTINH---PFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIG  317 (361)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g  317 (361)
                      +.  +..+.+++          ..++.....+   .+.+.+++...+++++...+...+....+.....|+|.|++ ++|
T Consensus       357 ~~--~~~k~~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg  424 (735)
T KOG3626|consen  357 DL--HVLKTESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFG  424 (735)
T ss_pred             hh--cccccccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcC
Confidence            00  00000000          0000011111   22222334444578888888888888889999999999996 569


Q ss_pred             CCChhhHHHhhhhhh-cccccccchhhHHHHhhhc
Q 018042          318 LGRLKVCQLSKWIEC-GGSIGFGRNMWVKWMNRVR  351 (361)
Q Consensus       318 ~s~~~~~~~~~~~~~-~~~~g~~~~~~~~l~dr~g  351 (361)
                      .+...+..+.....+ +..+|.+++|++  +.|+.
T Consensus       425 ~sas~An~l~G~i~vp~~~~Gi~lGG~i--ikkfk  457 (735)
T KOG3626|consen  425 ISASLANILTGSIGVPAAAVGIFLGGLI--IKKFK  457 (735)
T ss_pred             CCHHHHHHHhhhhhhhhhhhhhhcccee--eeeec
Confidence            999999888866544 455888888884  77664

>TIGR00889 2A0110 nucleoside transporter

Probab=99.52  E-value=2.5e-13  Score=123.60  Aligned_cols=149  Identities=15%  Similarity=0.179  Sum_probs=124.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHhhhhhhhhH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV----NVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      +.+..+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    +.+.+++.+++.|++.+...+.
T Consensus       249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~  328 (418)
T TIGR00889       249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS  328 (418)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999999999999888876666532    3456777899999999988889


Q ss_pred             HHHHHHhcCCcccccchhhHHH-HHHHHHHHHHHHHHhhhcccCCC---cchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          156 VPLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGG---WGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~---~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      ...++.|++|+++|+++.++.+ ...++|.+++|++++.+.+..+.   .||+..|.+.+++.++..+.. ++++|+.
T Consensus       329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999997 67889999999999887765432   579999988887777766665 4478774

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.52  E-value=7.4e-13  Score=119.83  Aligned_cols=149  Identities=15%  Similarity=0.132  Sum_probs=121.9

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      ++++|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+...
T Consensus       244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~  323 (393)
T PRK15011        244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILG  323 (393)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34457788888888888778888899999999999999998887776666655555566788888888999998888877


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  226 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  226 (361)
                      +....+..|.+|+ +|+++.++++....+|..+++.+++.+.+.   .+|+..+++.+++.++..+..++.||
T Consensus       324 ~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        324 GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            7888888999985 599999999888999999999998877653   47999999888887777777777765

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.50  E-value=4.5e-13  Score=122.33  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=113.9

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~  151 (361)
                      .+++|++..+.+.+.+.+.....++++++|+++||+ |||+++.++.++..++.++.+... +...+.++..+.++|.|.
T Consensus        37 ~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~  116 (493)
T PRK15462         37 TNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGL  116 (493)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccc
Confidence            344688999999999999999999999999999999 999999999999999987776543 223344444455566677


Q ss_pred             hhhHHHHHHHhcCCcc--cccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHH
Q 018042          152 ANQSVPLYLSEMAPAR--YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT  218 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~--~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~  218 (361)
                      ..+...++++|.+|++  +|..+.++...+.++|..++|.+.+.+.+   +.||++.|.+.++..++..
T Consensus       117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~---~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE---EYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh---hhChHHHHHHHHHHHHHHH
Confidence            7777889999999976  68999999999999999999999877654   3589999988765444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.49  E-value=1.2e-12  Score=117.43  Aligned_cols=246  Identities=15%  Similarity=0.065  Sum_probs=158.7

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      .|+|..|+|.+.+...+...++++++|.++||++ +|+.+.+..++..+........++++.+++.-++..+...+..+.
T Consensus        32 ~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl  111 (400)
T PF03825_consen   32 RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPL  111 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHH
Confidence            4789999999999999999999999999999986 567777777777777777777889998888888888888888888


Q ss_pred             HHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHH-HhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhh
Q 018042          156 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI-NYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR  234 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~  234 (361)
                      ..++..+...+  ++.-.+-.-...++|-+++... ...+....+..+..+.+++.+..+++.....+.+|+.|+....+
T Consensus       112 ~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~  189 (400)
T PF03825_consen  112 SDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAK  189 (400)
T ss_pred             HHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccC
Confidence            88887777653  2333444444455555444322 11122111112333455666555555555556678776210000


Q ss_pred             CCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH
Q 018042          235 KSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR  314 (361)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (361)
                      +.                              .++....+..+++|++...   + +.+..+...........+.+.|++
T Consensus       190 ~~------------------------------~~~~~~~~~~~llk~~~~~---~-Fll~~~l~~~~~~~~~~f~~~yl~  235 (400)
T PF03825_consen  190 ES------------------------------VKKLLGLDALKLLKNPRFL---V-FLLAAFLIGISHAAYYTFFSIYLQ  235 (400)
T ss_pred             CC------------------------------cccccchHHHHHhcCccHH---H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00                              0000011223455553222   2 222223333345667778888899


Q ss_pred             hcC-CCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecccC
Q 018042          315 TIG-LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  360 (361)
Q Consensus       315 ~~g-~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~~  360 (361)
                      +.| .+....+....+..++.++-....++  +..|+|.|+++.+++
T Consensus       236 ~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~--~~~r~g~~~ll~~a~  280 (400)
T PF03825_consen  236 ELGGYSGSTIGILWALGVVAEIPFFFFSGR--FLKRFGIKWLLLLAL  280 (400)
T ss_pred             HcccchhhHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHHH
Confidence            887 77788787777878888888888888  599999888876653

>PRK11462 putative transporter; Provisional

Probab=99.48  E-value=1e-12  Score=121.04  Aligned_cols=244  Identities=10%  Similarity=-0.001  Sum_probs=149.4

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh----hchhH-HHHHHHHHHHHHHHHhhhhhh------HHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRKP-SVLMGGAAFLAGSALGGAAVN------VYMLIFGR  142 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r  142 (361)
                      .+.+|++...+|.+..+.-+.-++..|+.|.++||    +|||+ .++++.+..+++.++.-..|+      ...+.+.-
T Consensus        37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~  116 (460)
T PRK11462         37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY  116 (460)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            34458899999999999999999999999999996    78864 455576777777666544442      33455566


Q ss_pred             HHHHhhhhhhhhHHHHHHHhcCC-cccccchhhHHHHHHHHHHHHHHHHHhhhcccC----CCcchHHHHHhhHHHHHHH
Q 018042          143 LLLGVGVGFANQSVPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIK----GGWGWRVSLALAAVPASIL  217 (361)
Q Consensus       143 ~l~G~~~~~~~~~~~~~~~e~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~wr~~~~~~~~~~~~~  217 (361)
                      ++..++......+-.++.+|..+ +++|.+..++...+..+|..+++.+...+....    ...+|+....+.+++.++.
T Consensus       117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~  196 (460)
T PRK11462        117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM  196 (460)
T ss_pred             HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            77788888888889999999987 788999999988888888777666543322211    1236887777766665555


Q ss_pred             HHhccc-ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHH
Q 018042          218 TLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFF  296 (361)
Q Consensus       218 ~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (361)
                      ....++ .+|.++.    ++  +                            +...++..+..++++..+.....    .+
T Consensus       197 ~~i~~~~~kE~~~~----~~--~----------------------------~~~~~~~l~~~~~Nk~~~~l~~~----~~  238 (460)
T PRK11462        197 LAFCFFTTKERVEA----PP--T----------------------------TTSMREDLRDIWQNDQWRIVGLL----TI  238 (460)
T ss_pred             HHHHHhcceeccCC----Cc--c----------------------------CCCHHHHHHHHhCChHHHHHHHH----HH
Confidence            544433 4553210    00  0                            00001123344444332222211    11


Q ss_pred             HHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          297 QQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      ..............++.+...-++...+.+.....++++++.+++++  +.||+++|+.+.
T Consensus       239 ~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~--l~~r~gkk~~~~  297 (460)
T PRK11462        239 FNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKP--LTDWKCKVTIFW  297 (460)
T ss_pred             HHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHhChHHHHH
Confidence            11122122222222232222112233344556667788888888888  699999987754

>TIGR01272 gluP glucose/galactose transporter

Probab=99.47  E-value=4.2e-13  Score=116.88  Aligned_cols=191  Identities=14%  Similarity=0.083  Sum_probs=138.5

Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCC----------
Q 018042          130 GAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG----------  199 (361)
Q Consensus       130 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------  199 (361)
                      +...++..++++-++.|.|.+...+....++++..++|++.+.+++.+.++++|..++|.++..+.....          
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            3457899999999999999999999999999999999999999999999999999999999886653210          


Q ss_pred             ---CcchHHHHHhhHHHHHHHHHhccc--ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccc
Q 018042          200 ---GWGWRVSLALAAVPASILTLGALF--LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHP  274 (361)
Q Consensus       200 ---~~~wr~~~~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (361)
                         ...|+++|++.+.+.++..+.+.+  +||.++     ++ .++.                       .+++   ...
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~-~~~~-----------------------~~~~---~~~  132 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----AD-VARV-----------------------SSGD---TTQ  132 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cc-cccc-----------------------cccc---ccc
Confidence               137999998766665555544433  455321     00 0000                       0000   000


Q ss_pred             hhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh---cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhc
Q 018042          275 FKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT---IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVR  351 (361)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~g  351 (361)
                      .++.++    ++.++...+..++.......+..|.+.|+.+   .|+++.+++.....+..+.++|++++++  +.||++
T Consensus       133 ~~~~~~----~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~--l~~r~g  206 (310)
T TIGR01272       133 KTSAFQ----FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSA--VMPMIS  206 (310)
T ss_pred             hhhHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC
Confidence            111222    2333345556666666677889999999964   4899999999999999999999999999  699999


Q ss_pred             cceeecc
Q 018042          352 WRKLDIY  358 (361)
Q Consensus       352 rr~~~~~  358 (361)
                      +|+++.+
T Consensus       207 ~~~~l~~  213 (310)
T TIGR01272       207 QGRYLAF  213 (310)
T ss_pred             HHHHHHH
Confidence            8877644

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.46  E-value=2.7e-14  Score=116.56  Aligned_cols=259  Identities=10%  Similarity=0.052  Sum_probs=158.5

Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh-hchhHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHH
Q 018042           71 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGA---AVNVYMLIFGRLLLG  146 (361)
Q Consensus        71 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G  146 (361)
                      .+.+.+.+++.++..++-+.+..-..+-+++.|++.|| +|.|..-++-+++..++.++++.   .+.+|.++++|++.|
T Consensus        68 ~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FG  147 (459)
T KOG4686|consen   68 IDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFG  147 (459)
T ss_pred             hhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeec
Confidence            34466677888888899999999999999999999998 69888888888888888887765   689999999999999


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc----ccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE----QIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      +|.-........|..-||..|+-+.++++.....-+|+.+-..+...+.    .+....+-... .+...+....+    
T Consensus       148 IGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~L-G~~l~~~~~tc----  222 (459)
T KOG4686|consen  148 IGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLL-GLWLCFEVKTC----  222 (459)
T ss_pred             cCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHH-HHHHHHHHHHH----
Confidence            9988888888999999999999999999988888888654333322221    11111111100 00000000000    


Q ss_pred             cccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcch
Q 018042          223 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGI  302 (361)
Q Consensus       223 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (361)
                        ..+-......+..++++++..++-.+.                 ..+...+.+..  ...++.++ ....+++.....
T Consensus       223 --~~slical~lg~~D~rAerilh~e~g~-----------------~Ge~pkLtdv~--~f~ppfw~-~~iicv~yyva~  280 (459)
T KOG4686|consen  223 --KQSLICALSLGLSDDRAERILHLEEGF-----------------LGEEPKLTDVN--TFYPPFWV-LVIICVLYYVAW  280 (459)
T ss_pred             --HHHHHHHHHhhhhhhHHHHHHhhhcCc-----------------ccCCccccccc--ccCccHHH-HHHHHHHHHHHH
Confidence              001001111111122232222211110                 00011111111  11122222 223333333333


Q ss_pred             hhhHHcHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          303 NVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       303 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      .-+....|.+++ ++|+|+..++.+.+.......+-+.+.|.  ++||.|++-+++.
T Consensus       281 fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~--i~Dk~G~n~~wv~  335 (459)
T KOG4686|consen  281 FPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGA--ISDKYGFNLWWVA  335 (459)
T ss_pred             HHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHH--hHhhhcceehhHH
Confidence            444555666664 66999999999888887777777777787  4999999877654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.45  E-value=1.5e-12  Score=118.93  Aligned_cols=148  Identities=18%  Similarity=0.161  Sum_probs=123.6

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  157 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  157 (361)
                      +.+..+.+.+.++..++..++.++.|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  337 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF  337 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667789999999999999999999999999999999999999999888888899999999999999999888888888


Q ss_pred             HHHHhcCCcccccchhhH-HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCCh
Q 018042          158 LYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETP  228 (361)
Q Consensus       158 ~~~~e~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~  228 (361)
                      .++.|.+|++.|+...+. ++....+|.++++.+.+.+.+.   .||+..|.+.+++.++..+..+ ++++.+
T Consensus       338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~---~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS---IGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999887655 6777889999999997776653   4799999987777666554443 344443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.42  E-value=4.3e-12  Score=112.70  Aligned_cols=145  Identities=22%  Similarity=0.267  Sum_probs=131.6

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKP-SVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      +|.+..+.+...+...++..++.++.+++.||+|||+ .+..+.++..++.+.....++.+.+++..++.|++.+...+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  285 (352)
T cd06174         206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA  285 (352)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence            4778999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          156 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      ...++.|..|+++|++.+++.+....+|..+++.+.+.+.+   +.+|++.+.+.+++.++..+..+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---~~~~~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---TGGYGGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHHHheec
Confidence            99999999999999999999999999999999999777664   3589999999888887776665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.42  E-value=3.8e-12  Score=115.77  Aligned_cols=148  Identities=14%  Similarity=0.068  Sum_probs=121.3

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      ++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+.+...++.++....++.+.+.+..++.|++.+...+
T Consensus       248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  327 (406)
T PRK11551        248 VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQS  327 (406)
T ss_pred             HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHH
Confidence            33578888999999999999999999999999999999999887777777777777777888888888889998888888


Q ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      ....++.|.+|+++|++..++.+....+|..++|.+.+.+.+..  .+|...++......++..+..++.
T Consensus       328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999987766432  256666666655555544444444

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=2.1e-12  Score=115.96  Aligned_cols=140  Identities=10%  Similarity=-0.014  Sum_probs=117.3

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNV--YMLIFGRLLLGVGVGFA  152 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~~~  152 (361)
                      +++|.+.++.+.+.+...++..++.++.|++.||+|||+.+..+.++..++.++..+.++.  ..++...++.|++.+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  312 (377)
T TIGR00890       233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT  312 (377)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence            3456778888999999999999999999999999999999999998888888877766643  33445678888888888


Q ss_pred             hhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHH
Q 018042          153 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  217 (361)
Q Consensus       153 ~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  217 (361)
                      .+..+.++.|.+|+++|++..++.+....+|..++|.+.+.+.+   +.||++.|.+.+++.++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT---EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh---hhchhhHHHHHHHHHHHh
Confidence            88888899999999999999999999999999999999776654   347999998877765543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.41  E-value=1.1e-11  Score=113.34  Aligned_cols=247  Identities=17%  Similarity=0.162  Sum_probs=165.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHH-HHHHHHHHHHHhhhh-h-hHHHHHHHHHHHHhhhhhhhhHHHH
Q 018042           82 QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLM-GGAAFLAGSALGGAA-V-NVYMLIFGRLLLGVGVGFANQSVPL  158 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~-~~~~~~~~~~~~~~~-~-~~~~~~~~r~l~G~~~~~~~~~~~~  158 (361)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ...+..+.+.+..+. + +++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678888899999999999999999987765554 455555666666663 3 4444455566666788888888999


Q ss_pred             HHHhcCCcccc--------------------------cchhhHHHHHHHHHHHHHHHHHhhhcccCC-----CcchHHHH
Q 018042          159 YLSEMAPARYR--------------------------GAINNGFQFSIGIGALAANFINYGTEQIKG-----GWGWRVSL  207 (361)
Q Consensus       159 ~~~e~~~~~~R--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~wr~~~  207 (361)
                      ++.|..+++.+                          ++..+.-.....+|.++...+...+....+     ..+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999988                          888888777777777776666554432222     12457777


Q ss_pred             HhhHHHHHHHHHh-cccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhH
Q 018042          208 ALAAVPASILTLG-ALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQ  286 (361)
Q Consensus       208 ~~~~~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (361)
                      .+.++.-++..+. .+++||.|+....++. ..-...             .              .+..++.+++..+.+
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~-~~~~~~-------------g--------------~~~l~~t~k~~~~~~  281 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSG-SSYLRF-------------G--------------FKRLWRTFKEIRKLR  281 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-hhHHHH-------------H--------------HHHHHHHHHHHHhCh
Confidence            7776665555444 4558887642000000 000000             0              001122222222234


Q ss_pred             HHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccc--eeecc
Q 018042          287 LLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR--KLDIY  358 (361)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr--~~~~~  358 (361)
                      ....+++.+++..-+.+.+......|.+ .+|++..+...+.....+.+++|.++.++  +.||+|.|  ++++.
T Consensus       282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~--l~~r~g~k~~~~l~~  354 (477)
T PF11700_consen  282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGW--LQDRFGPKTKRTLLI  354 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCchhHHHHH
Confidence            4444556666666677777777777775 67999999999999999999999999999  69999988  66544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.41  E-value=1.5e-11  Score=105.26  Aligned_cols=232  Identities=15%  Similarity=0.171  Sum_probs=145.3

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +++|++..+++.+....+...++..++.|.++||+|||+.-+..+++..+.|+. -..++++.++++|++.|++.+..+.
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999999964 4568999999999999999999888


Q ss_pred             HHHHHH-Hhc----CCcccccchhhHHH-HHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-ccCC
Q 018042          155 SVPLYL-SEM----APARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPET  227 (361)
Q Consensus       155 ~~~~~~-~e~----~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es  227 (361)
                      .-.+++ .|.    +|++..+...+... ...++-.+.+.+++..+.+..+ .|-..+|....++.++..+.+.. -+|.
T Consensus       141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            877764 443    22222222222222 2223333444444444433222 24467787777666666555433 4554


Q ss_pred             hhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHH
Q 018042          228 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  307 (361)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (361)
                      +....++ .  +..                           +..++.++.+.++   ++++........+..+.+..+..
T Consensus       220 yg~~~~~-~--~~~---------------------------~~~~~a~~~i~~d---~ril~LG~~qslFE~smy~FVfl  266 (354)
T PF05631_consen  220 YGDTSSS-S--SLS---------------------------GSFREAWRAILSD---PRILLLGLIQSLFEGSMYLFVFL  266 (354)
T ss_pred             CCCcccc-c--chH---------------------------HHHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHheee
Confidence            3210000 0  000                           0001122333332   35555555566666565566666


Q ss_pred             cHHHHHHhcCCCChhhHHHhhhhhhcccccccchhh
Q 018042          308 YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMW  343 (361)
Q Consensus       308 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~  343 (361)
                      |.|.+- ..+ ....-+.+++.+.++.++|+.+..+
T Consensus       267 WtPaL~-~~~-~~~P~GlIFssFM~a~MlGS~lf~~  300 (354)
T PF05631_consen  267 WTPALD-PDD-EELPLGLIFSSFMVAMMLGSSLFSR  300 (354)
T ss_pred             eeceec-CCC-CCCCchHHHHHHHHHHHHHHHHHHH
Confidence            777654 111 2334677888888888888877765

>PRK09848 glucuronide transporter; Provisional

Probab=99.41  E-value=1.4e-12  Score=120.20  Aligned_cols=245  Identities=11%  Similarity=0.026  Sum_probs=137.7

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh----chhHHH-HHHHHHHHHHHHHh-hh----hh--hHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF----GRKPSV-LMGGAAFLAGSALG-GA----AV--NVYMLIFG  141 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----Grr~~l-~~~~~~~~~~~~~~-~~----~~--~~~~~~~~  141 (361)
                      ++.+|++..++|.+.+...+..++..++.|+++||.    |||+.+ ..+.+...+..++. ..    ..  ..+.+++.
T Consensus        36 ~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (448)
T PRK09848         36 TDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLT  115 (448)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHH
Confidence            455688999999999999999999999999999996    777654 55555444444332 11    11  22334445


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhcCCc-ccccchhhHHHHH-----HHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHH
Q 018042          142 RLLLGVGVGFANQSVPLYLSEMAPA-RYRGAINNGFQFS-----IGIGALAANFINYGTEQIKGGWGWRVSLALAAVPAS  215 (361)
Q Consensus       142 r~l~G~~~~~~~~~~~~~~~e~~~~-~~R~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~  215 (361)
                      .++.+++.+...++..++..|..++ ++|.+..+.-..+     ..++..++|.++....... ..+|.....+.+++.+
T Consensus       116 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~~  194 (448)
T PRK09848        116 YMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAGM  194 (448)
T ss_pred             HHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHH
Confidence            5677888888887777877777654 6788776654433     3345556666654322110 0122222222233333


Q ss_pred             HHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHH
Q 018042          216 ILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIP  294 (361)
Q Consensus       216 ~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (361)
                      +..+.. ...||+++.    +.                              ++...+..++++++++...    ...+.
T Consensus       195 ~~~~~~~~~~~e~~~~----~~------------------------------~~~~~~~~~~~l~~n~~f~----~~~~~  236 (448)
T PRK09848        195 VLYFICFKSTRENVVR----IV------------------------------AQPSLKISLQTLKRNRPLF----MLCIG  236 (448)
T ss_pred             HHHHHHHcCcEeccCC----Cc------------------------------cCCCHHHHHHHHhCCchHH----HHHHH
Confidence            322222 335554310    00                              0000111344555553322    22222


Q ss_pred             HHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          295 FFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .++............|+++++ .|.+....+.......++.+++.++.++  +.||+|+|+++.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~r~g~~~~~~~g  300 (448)
T PRK09848        237 ALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPG--MVARIGKKNTFLIG  300 (448)
T ss_pred             HHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcHHHHHHH
Confidence            233333334455566666654 4766555554444445666778888888  69999999887654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.40  E-value=8.9e-12  Score=113.09  Aligned_cols=141  Identities=15%  Similarity=0.110  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhc
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEM  163 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~  163 (361)
                      .+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++.+.+++..++.|++.+..++.....+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  330 (399)
T PRK05122        251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR  330 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            45566778888899999999999999999999999888888888888888888888889999999998888888888999


Q ss_pred             CCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCC
Q 018042          164 APARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET  227 (361)
Q Consensus       164 ~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es  227 (361)
                      +|+++|+++.++++....+|..+++.+.+.+.+.   .||++.+++.++..++..+..+++++.
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        331 VPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999988888876666543   479999998887777766665555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=1.4e-11  Score=110.84  Aligned_cols=148  Identities=16%  Similarity=0.182  Sum_probs=120.7

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +++|.+..+.+++.+.......++.++.|++.||+|||+.+..+.++..+........++.+.+++.+++.|++.+...+
T Consensus       228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  307 (375)
T TIGR00899       228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAG  307 (375)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577888888888777777788889999999999999999888777666666666677888888889999999988888


Q ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 018042          155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  226 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  226 (361)
                      ....++.|..|+ +|+.+.++++....+|..+++.+.+.+.+.   .+|+..|++.++..++..+...+++|
T Consensus       308 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       308 IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHheecC
Confidence            888999999875 567999999988889999999997776543   47999999888877777666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.37  E-value=1.8e-11  Score=113.95  Aligned_cols=155  Identities=17%  Similarity=0.124  Sum_probs=111.1

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh--h-HH-HHHHHHHHHHhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--N-VY-MLIFGRLLLGVGV  149 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~-~~-~~~~~r~l~G~~~  149 (361)
                      .++.|.+.....+......++..++.++.++++||+|||+.++.+.++.+++.++.+...  + .+ ....+.++.+.+.
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  377 (479)
T PRK10077        298 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF  377 (479)
T ss_pred             HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence            445577777667777777888899999999999999999999999998888877765432  1 11 2223344444444


Q ss_pred             hhh-hhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc---ccCCCcchHHHHHhhHHHHHHHHHhcc-cc
Q 018042          150 GFA-NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE---QIKGGWGWRVSLALAAVPASILTLGAL-FL  224 (361)
Q Consensus       150 ~~~-~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~  224 (361)
                      +.. .+....+++|.+|+++|+.++++......+|.++++.+...+.   ...++.+|++.|++.++..++..+..+ +.
T Consensus       378 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (479)
T PRK10077        378 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV  457 (479)
T ss_pred             hccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcc
Confidence            432 3667899999999999999999999988888888765543332   223356788888887776666665554 46


Q ss_pred             cCCh
Q 018042          225 PETP  228 (361)
Q Consensus       225 ~es~  228 (361)
                      ||+.
T Consensus       458 ~e~~  461 (479)
T PRK10077        458 PETK  461 (479)
T ss_pred             ccCC
Confidence            7763

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.36  E-value=5.2e-12  Score=116.36  Aligned_cols=142  Identities=9%  Similarity=-0.062  Sum_probs=114.7

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh--hchhHHHHH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA--FGRKPSVLM--GGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      ++|.+..+.+.+.++..++..++.++.|+++||  +++|+...+  +.++.+++.++....++++.+++.+++.|++.+.
T Consensus       270 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~  349 (455)
T TIGR00892       270 DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGS  349 (455)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhch
Confidence            347788999999999999999999999999997  344433333  3344445555666778888888999999999999


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHH
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  219 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  219 (361)
                      ..+...+++.|.+|+++|++.+++++....+|.+++|.+++.+.+..+  +|++.|++.++..++..+
T Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999999999999999999776664432  699999888776655443

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=2.7e-11  Score=109.65  Aligned_cols=136  Identities=13%  Similarity=0.107  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhc
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEM  163 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~  163 (361)
                      .+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+.++++.++.|++.+...+.....+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45556677788889999999999999999999999988888888888888888888899999999998888888899999


Q ss_pred             CCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          164 APARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       164 ~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      +|+++|+++.++++....+|..+++.+.+.+.+.   .||++.|.+.+++.++..+..+
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997776643   4799999988877766665544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.35  E-value=3.4e-12  Score=114.00  Aligned_cols=247  Identities=15%  Similarity=0.150  Sum_probs=170.1

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh----hchh-HHHHHHHHHHHHHHHHhhhhhh------HHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRK-PSVLMGGAAFLAGSALGGAAVN------VYMLIFGR  142 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r  142 (361)
                      .+.+|++...+|.+..+.=+--++..|+.|.++||    |||+ +.++.+.+..++.+.++-.+++      .....+.-
T Consensus        40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY  119 (467)
T COG2211          40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY  119 (467)
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence            44468899999999888888889999999999996    7865 5666777888888888877663      34456668


Q ss_pred             HHHHhhhhhhhhHHHHHHHhcCC-cccccchhhHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHHhhHHHHHHH
Q 018042          143 LLLGVGVGFANQSVPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIKG----GWGWRVSLALAAVPASIL  217 (361)
Q Consensus       143 ~l~G~~~~~~~~~~~~~~~e~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~wr~~~~~~~~~~~~~  217 (361)
                      .+.+++......+-.++.+|+.+ ++||.+..+.-..+..+|.++...+...+....+    ..||+...++.+++.++.
T Consensus       120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~  199 (467)
T COG2211         120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL  199 (467)
T ss_pred             HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence            89999999999999999999975 5789999999888888886555444333332221    348888888888887777


Q ss_pred             HHhccc-ccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchh----hhcccCchhHHHHHHH
Q 018042          218 TLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFK----KIIQRKYRPQLLMAMA  292 (361)
Q Consensus       218 ~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  292 (361)
                      .+.+++ .+|.+..   ...                              .+...+.+++    .+++++    .+...+
T Consensus       200 ~l~~~~~v~ER~~~---~~~------------------------------~~~~~~~~~~~~~~~~~~Nr----p~~~~l  242 (467)
T COG2211         200 LLFCFFNVKERVVE---TQP------------------------------TKTGVKLKLKDSFLLIFKNR----PLLLLL  242 (467)
T ss_pred             HHHHHHHhhcccCc---ccc------------------------------CcccccccHHHHHHHHHccc----hHHHHH
Confidence            777666 6665420   000                              0001122333    333442    222233


Q ss_pred             HHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          293 IPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +..++...+.+.......+|.+ ..|.+.............+.+++.++...  +.+|+|+|+++.++
T Consensus       243 ~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~--L~~~~gkk~~~~~~  308 (467)
T COG2211         243 LMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPR--LVKKFGKKKLFLIG  308 (467)
T ss_pred             HHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhchHHHHHHH
Confidence            3444445555555666666654 33777777777777777777777888888  79999999987665

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.33  E-value=2.1e-11  Score=112.86  Aligned_cols=150  Identities=15%  Similarity=-0.006  Sum_probs=108.8

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSA--LGGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      ++++|++..+.++..+...++..++.++.|+++||+|||+.+.....+..++..  .....++.+...+.+++.|++...
T Consensus       286 ~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  365 (467)
T PRK09556        286 FQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFG  365 (467)
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Confidence            445688999999999999999999999999999999999877665444443322  222345666666778888865444


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHH-HHHHHHHHHhhhcc-cC--------CCcchHHHHHhhHHHHHHHHHhc
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQ-IK--------GGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~-~~--------~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      ..........|.+|++.|+.+.++.+....+ |..++|.+.+.+.+ ..        ...+|+..|++..+..++..+..
T Consensus       366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        366 PQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence            3434446777999999999999999887775 76788888666665 10        03579999988766666655544


Q ss_pred             cc
Q 018042          222 LF  223 (361)
Q Consensus       222 ~~  223 (361)
                      ++
T Consensus       446 ~~  447 (467)
T PRK09556        446 AI  447 (467)
T ss_pred             HH
Confidence            43

>PRK09952 shikimate transporter; Provisional

Probab=99.32  E-value=6e-11  Score=108.91  Aligned_cols=152  Identities=14%  Similarity=0.105  Sum_probs=109.4

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----AVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~  150 (361)
                      +++|.+.+..........+...++.++.|+++||+|||+++..+.++..++.+....    .++.+.+++..++.+++.+
T Consensus       279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  358 (438)
T PRK09952        279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD  358 (438)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            344666665555555666677888999999999999999988887766554433322    1234445556677788888


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhH-HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCC
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET  227 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es  227 (361)
                      ...+...++++|.+|++.|+.+.++ +..+..+|..++|.+.+.+.+..+ .+|+..+.+.++..++..+..+.++|+
T Consensus       359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        359 MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            8888889999999999999888888 445566888888988777654322 258888887777777666666666664

>PRK03699 putative transporter; Provisional

Probab=99.30  E-value=6.4e-11  Score=107.28  Aligned_cols=148  Identities=14%  Similarity=0.041  Sum_probs=120.1

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +++|++..+.+.+.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+..++
T Consensus       234 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  313 (394)
T PRK03699        234 KKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYT  313 (394)
T ss_pred             HHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            44578899999999999999999999999999999999999888877777777766777777777778889998888888


Q ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 018042          155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  226 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  226 (361)
                      ...++..|..| ++++...+.......+|..++|.+.+.+.+.   .||+..+++.+++.++..+...+.++
T Consensus       314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        314 TIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH---FGLQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH---hCchhhhhhhHHHHHHHHHHHHHHHH
Confidence            88888888776 4567778888888889999999997776653   47999988877777766665555543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.29  E-value=5.6e-11  Score=107.19  Aligned_cols=142  Identities=15%  Similarity=0.065  Sum_probs=113.5

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      .|.+.++.+...+...++..++.++.|++.||+|+|+++..+..+..++.+...  + ........++.|++.....+..
T Consensus       230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~  306 (381)
T PRK03633        230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVA  306 (381)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHH
Confidence            367888889999999999999999999999999999999888887777665443  2 2334456778888877788899


Q ss_pred             HHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          157 PLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      ..++.|..|+++++...+.......+|.+++|.+++.+.+.   .+|++.|.+.+.+.++..+..+..
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---YSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHHHHHhc
Confidence            99999999988888788888888999999999998877653   479999988777776555444433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.28  E-value=7.8e-11  Score=102.56  Aligned_cols=247  Identities=13%  Similarity=0.100  Sum_probs=153.1

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-----hhHHH-HHHHHHHHHHHHHhhhh-----h--------h
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-----RKPSV-LMGGAAFLAGSALGGAA-----V--------N  134 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rr~~l-~~~~~~~~~~~~~~~~~-----~--------~  134 (361)
                      -.|++++....+.+.+...+... ..+.+|+.||+.+     ||..+ ..|.++...+..+..++     .        .
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            34567888888888887776655 5889999999999     88555 44666666665555442     2        2


Q ss_pred             -HH--HHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHh--
Q 018042          135 -VY--MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLAL--  209 (361)
Q Consensus       135 -~~--~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~--  209 (361)
                       .+  ...+...+.|+|.+...+...++++|..|+|+|+++.++......+|.+++.++.+.+.+..+  .-|..-.+  
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s--~~rL~~v~~~  163 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS--PERLIQVIQG  163 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC--HHHHHHHHHH
Confidence             22  334457889999999999999999999999999999999999999999998888655443322  22222222  


Q ss_pred             hHHHHHHHHHhcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHH
Q 018042          210 AAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLM  289 (361)
Q Consensus       210 ~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (361)
                      .+++.+...++..+-.|.+.....+ .                           .++++...+..+++++.++..++.+.
T Consensus       164 ~a~i~~~l~~ia~wg~E~r~~~~~~-~---------------------------~~~~~~~f~~a~~~~~~~~~a~~f~~  215 (403)
T PF03209_consen  164 VALIALLLNLIALWGQEPRRSRRAA-A---------------------------AERPRPPFREAWRQVWASPQARRFFV  215 (403)
T ss_pred             HHHHHHHHHHHHHHhcccCCccccc-C---------------------------CCCCCccHHHHHHHHHhCCChhHHHH
Confidence            2222222222223323332100000 0                           00111112334556665555555544


Q ss_pred             HHHHHHHHHhcchhhhHHcHHHHH-HhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceee
Q 018042          290 AMAIPFFQQVTGINVIAFYAPLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  356 (361)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~  356 (361)
                      ...+..+.    +..-...+..|- +-+|++..+...++.....+..+|....++. +..|.+++++.
T Consensus       216 fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~-l~~~~~~~~~a  278 (403)
T PF03209_consen  216 FLFLGTLA----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFL-LSRRLGKKRTA  278 (403)
T ss_pred             HHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCchHHH
Confidence            44333322    122222333333 3359999999999999999999999999984 44466665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.28  E-value=3e-11  Score=112.11  Aligned_cols=151  Identities=16%  Similarity=0.097  Sum_probs=112.0

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh-----hh------hHHHHHHHHH
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-----AV------NVYMLIFGRL  143 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-----~~------~~~~~~~~r~  143 (361)
                      +++|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.++.++     .+      +...+....+
T Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (481)
T TIGR00879       312 ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL  391 (481)
T ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence            345778888888889999999999999999999999999999988887777766652     11      2222333333


Q ss_pred             HHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-c
Q 018042          144 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-L  222 (361)
Q Consensus       144 l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~  222 (361)
                      +.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+..   +.+|++.|++.+++.++..+.. +
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE---SIGVGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             HHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccceehhHHHHHHHHHHHHhe
Confidence            33332223345666778999999999999999999999999999988665543   2479998888887777766655 4


Q ss_pred             cccCCh
Q 018042          223 FLPETP  228 (361)
Q Consensus       223 ~~~es~  228 (361)
                      +.||++
T Consensus       469 ~~~~~~  474 (481)
T TIGR00879       469 FLPETK  474 (481)
T ss_pred             ecccCC
Confidence            467653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.28  E-value=1.5e-10  Score=104.32  Aligned_cols=140  Identities=9%  Similarity=0.023  Sum_probs=121.7

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      +.|.+.++.+.+.+...++..++.++.+++.||+|+|+.+.++.+...+..+..+++++.+.+++.+++.|++.+...+.
T Consensus       234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~  313 (382)
T TIGR00902       234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA  313 (382)
T ss_pred             HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccccchhhHHH-HHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHh
Q 018042          156 VPLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  220 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  220 (361)
                      ...++.+. |+++|++..++++ ...++|.++++.+++.+.+..   ++ ..|+..+.+.++..+.
T Consensus       314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHH
Confidence            99999998 9999999999876 577899999999988887643   55 4455666555554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.28  E-value=1.4e-10  Score=104.93  Aligned_cols=148  Identities=16%  Similarity=0.070  Sum_probs=113.3

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-AVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      +|.+..+.+...+.+.++..++.++.+++.||+|||+.+..+..+..++.++... .++...+  .-++.|++.+...+.
T Consensus       235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~  312 (393)
T PRK09705        235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPL  312 (393)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHH
Confidence            4778889999999999999999999999999999999998888777777665543 2222222  234667887777777


Q ss_pred             HHHHHHhcCC-cccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          156 VPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       156 ~~~~~~e~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      ......+.++ +++|++..++.+....++..++|.+.+.+.+..+  +|...|.+.++..++..+.. ++.||++
T Consensus       313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            7777777775 5789999999999999999999999887776554  57777777666666555544 5577764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.28  E-value=7.7e-11  Score=107.27  Aligned_cols=137  Identities=15%  Similarity=0.043  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhc
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEM  163 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~  163 (361)
                      .+.+.++..++..++.+..|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+....++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45666677788889999999999999999999999888888888777778888888999999999999999999999999


Q ss_pred             CCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          164 APARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       164 ~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      .|+++|++.+++......+|..++|.+++.+.+.   .+|++.|++.++..++..+..++
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---YGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998877643   47999999888877776655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.28  E-value=1.2e-10  Score=106.43  Aligned_cols=149  Identities=11%  Similarity=0.050  Sum_probs=123.9

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++.+...++.++.|++.+...+..
T Consensus       254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  333 (417)
T PRK10489        254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQ  333 (417)
T ss_pred             cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788899999999999999999999999999888888888888888888888888888888888999999988888888


Q ss_pred             HHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHh-cccccCCh
Q 018042          157 PLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG-ALFLPETP  228 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~~es~  228 (361)
                      .+++.|..|++.|+++++++.....+|..+++.+.+.+.+.   .|.+..+.+.+...++..++ ...+||.+
T Consensus       334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM---MTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH---hchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            89999999999999999999999999999999998777654   36777777666555554443 35566654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.28  E-value=4.6e-11  Score=107.92  Aligned_cols=138  Identities=14%  Similarity=0.097  Sum_probs=106.2

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHH--HHhhh--hhhHHHHHHHHHHHHhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGS--ALGGA--AVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~r~l~G~~~~  150 (361)
                      +++|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+..  +....  .++.+.+++..++.|++.+
T Consensus       248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  327 (394)
T TIGR00883       248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG  327 (394)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            3457788889999999999999999999999999999998776554443332  12222  2466777777889999988


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhH-HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHH
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPA  214 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~  214 (361)
                      ...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.+..+  .|++.++......
T Consensus       328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~  390 (394)
T TIGR00883       328 MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALA  390 (394)
T ss_pred             HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHH
Confidence            8999999999999999999999997 456677888899999877765442  3777766655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.27  E-value=2.1e-11  Score=113.96  Aligned_cols=136  Identities=12%  Similarity=-0.062  Sum_probs=105.3

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--VNVYMLIFGRLLLGVGVGFA  152 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~  152 (361)
                      +++|++..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.+.....  .+.+.+.+..++.+......
T Consensus       304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (496)
T PRK03893        304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI  383 (496)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc
Confidence            4668899999999999999999999999999999999999888877766665544332  34444444455554444444


Q ss_pred             hhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHH
Q 018042          153 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVP  213 (361)
Q Consensus       153 ~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~  213 (361)
                      .+..+.++.|.+|+++|++.+++......+|..++|.+++.+.+.   .||+..+...+..
T Consensus       384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~---~g~~~~~~~~~~~  441 (496)
T PRK03893        384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR---LDLGTALASLSFS  441 (496)
T ss_pred             chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc---CChHHHHHHHHHH
Confidence            567778899999999999999999999999999999998777653   4788777554433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=1.6e-10  Score=105.84  Aligned_cols=151  Identities=11%  Similarity=0.112  Sum_probs=132.0

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchh--HHHHHHHHHHHHHHHHhhh--------hhhHHHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRK--PSVLMGGAAFLAGSALGGA--------AVNVYMLIFGRL  143 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~  143 (361)
                      ++++|++..+...+.-+..+...+|++++|++.||+|.|  ++++++.+++.+.++...+        ..+.+.+.+.-+
T Consensus       309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~  388 (477)
T PF11700_consen  309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV  388 (477)
T ss_pred             HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence            557799999999999999999999999999999999999  8999988888777666666        678889999999


Q ss_pred             HHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          144 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       144 l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      +.|+..|..++...++.+|+.|+++.+..++++....-....+||.+-+.+.+..+  +-|+.+....++.++.+++.++
T Consensus       389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999888887765  5777777777776666666666


Q ss_pred             ccC
Q 018042          224 LPE  226 (361)
Q Consensus       224 ~~e  226 (361)
                      +++
T Consensus       467 v~~  469 (477)
T PF11700_consen  467 VDV  469 (477)
T ss_pred             ccc
Confidence            654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.26  E-value=1.9e-10  Score=104.13  Aligned_cols=144  Identities=15%  Similarity=0.078  Sum_probs=113.6

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGS-ALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      +++|.+..+.+++.+...++..++.++.|+++||+|||.... +..+..++. .+....++.+.++++.++.|++.+...
T Consensus       234 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~  312 (390)
T PRK03545        234 QVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIG  312 (390)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcch
Confidence            345778888999999999999999999999999999887644 444444433 334456778888888999999887777


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      +.....+.|..| ++|+++++++.....+|..+|+++++.+.+.   .|++..|++.+++.++..+..++
T Consensus       313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~---~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        313 LAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH---LGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHH
Confidence            777788888876 6889999999998999999999998777643   58999998888777766655543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.24  E-value=1.8e-10  Score=102.42  Aligned_cols=146  Identities=23%  Similarity=0.260  Sum_probs=125.0

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhhhhhh
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVGFA  152 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~  152 (361)
                      .+|+++++..-+.++|..-.-+.++++|+++||+ |+|+++..|.++..+|.++.+.+.  +...++++-.+.++|.|..
T Consensus        55 gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~  134 (498)
T COG3104          55 GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF  134 (498)
T ss_pred             cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence            3778999988888888888888999999999996 999999999999999999999884  7888999999999999999


Q ss_pred             hhHHHHHHHhcCCccc--ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          153 NQSVPLYLSEMAPARY--RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       153 ~~~~~~~~~e~~~~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      =+...++++|.+|+++  |-...+++..+.++|+.++|++...+..   +.||...|...++-..+.++..+..
T Consensus       135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~---~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI---NYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999998764  5667888999999999999999776664   4589999988777666555544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.23  E-value=1.6e-10  Score=104.43  Aligned_cols=143  Identities=15%  Similarity=0.064  Sum_probs=102.9

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhH--HH------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKP--SV------LMGGAAFLAGSALGGAAVNVYMLIFGRLLLG  146 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~--~l------~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  146 (361)
                      +++|.+..+.+++.+...++..++.++.|+++||+|||+  ..      ..+.++..+........++.+..+....+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (399)
T TIGR00893       244 QERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF  323 (399)
T ss_pred             HHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            345778888999999999999999999999999999996  11      1111111222222222334444444445555


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcc-hHHHHHhhHHHHHHHHHhc
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWG-WRVSLALAAVPASILTLGA  221 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-wr~~~~~~~~~~~~~~~~~  221 (361)
                      .+.+ ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.   .+ |+..+++.++..++..+..
T Consensus       324 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       324 FGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT---TGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC---CCchhHHHHHHHHHHHHHHHHH
Confidence            5544 7888999999999999999999999999999999999997766543   35 8888888777666555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.21  E-value=3.9e-10  Score=105.47  Aligned_cols=140  Identities=23%  Similarity=0.097  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHhhhhhhhhHHHHHHHhcC
Q 018042           89 SSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN----VYMLIFGRLLLGVGVGFANQSVPLYLSEMA  164 (361)
Q Consensus        89 ~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~  164 (361)
                      .+..++..++.++.++++||+|||+.++++.++.+++.++.++..+    ...+...-+...++.....+....+.+|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3445566778899999999999999998888777777665554321    111111111112222223456677789999


Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHhhhcccCC-------CcchHHHHHhhHHHHHHHHHhcccccCCh
Q 018042          165 PARYRGAINNGFQFSIGIGALAANFINYGTEQIKG-------GWGWRVSLALAAVPASILTLGALFLPETP  228 (361)
Q Consensus       165 ~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~wr~~~~~~~~~~~~~~~~~~~~~es~  228 (361)
                      |++.|+++.++.+....+|.++++.+...+.+..+       +.++...|++.+++.++..+..+++||+.
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence            99999999999999999999999988665544211       23455667776666666655556789974

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.21  E-value=1.9e-10  Score=104.43  Aligned_cols=133  Identities=17%  Similarity=0.023  Sum_probs=106.8

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSA-LGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      +++|++..+.+++.+...++..++.++.|+++||+|||+.+..+.++..+..+ .....++.+.+.++.++.|++.+...
T Consensus       267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (405)
T TIGR00891       267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW  346 (405)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence            34578899999999999999999999999999999999998888776533332 33344566667777778887777777


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHh
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLAL  209 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~  209 (361)
                      +....++.|.+|+++|++++++.+....+|..++|++.+.+.+..+  .|+..+..
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g--~~~~~~~~  400 (405)
T TIGR00891       347 GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD--EYGTALAS  400 (405)
T ss_pred             hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhHHh
Confidence            8888999999999999999999999999999999999887776432  26655543

>TIGR00898 2A0119 cation transport protein

Probab=99.21  E-value=5.7e-10  Score=104.58  Aligned_cols=136  Identities=20%  Similarity=0.104  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHhhhhhhhhHHHHHHHhcCC
Q 018042           88 TSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNV--YMLIFGRLLLGVGVGFANQSVPLYLSEMAP  165 (361)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~  165 (361)
                      .....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+..++....+.+|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344456677888999999999999999999999988888877776544  445555677777777888889999999999


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 018042          166 ARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  228 (361)
Q Consensus       166 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  228 (361)
                      ++.|+.++++.+....+|.+++|.+.. +..    .++...+++.++..++..+..+++||+.
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            999999999999999999999999876 322    2566777777777777767677788874

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.20  E-value=2.8e-11  Score=107.03  Aligned_cols=242  Identities=18%  Similarity=0.143  Sum_probs=130.9

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHH--HHHHHH-hhhh----hhHH-HHHHHHHHHHhh
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAF--LAGSAL-GGAA----VNVY-MLIFGRLLLGVG  148 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~--~~~~~~-~~~~----~~~~-~~~~~r~l~G~~  148 (361)
                      -|++.+++|.+.++..+...+.+++.|.++||+|.||-++....+.  ..+... ..+.    .|.+ ..+++-+..|++
T Consensus        38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~  117 (412)
T PF01306_consen   38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV  117 (412)
T ss_dssp             H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999999999999776554433222  222222 2222    2222 233334444555


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-ccCC
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPET  227 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es  227 (361)
                      .....+..-+++.++.  ++.+.=.|-.-...++|.+++..+++.+...    +-+..||+.....++..++.++ -|+.
T Consensus       118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~~~~  191 (412)
T PF01306_consen  118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLKPDV  191 (412)
T ss_dssp             TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS---S
T ss_pred             HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcCCcC
Confidence            5555566666655543  2223344445566677777777776655532    3567777766655555544433 3343


Q ss_pred             hhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchh---hhcccCchhHHHHHHHHHHHHHhcchhh
Q 018042          228 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFK---KIIQRKYRPQLLMAMAIPFFQQVTGINV  304 (361)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
                      ++.....+.                             +.+++++.+.+   ++++.+   +.+. +.+......+.+..
T Consensus       192 ~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l~k~~---~fw~-~~l~v~g~~~~Y~v  238 (412)
T PF01306_consen  192 PPQAEVADA-----------------------------LGAKKDKVSLKDVLSLFKMR---NFWF-FVLFVIGVAAIYDV  238 (412)
T ss_dssp             SSSS-SSTT-----------------------------SSS------HHHHHHHTTSH---HHHH-HHHHHHHHHHHHHH
T ss_pred             chhhhhhcc-----------------------------cccCCCCCcHHHHHHHhcch---hHHH-HHHHHHHHHHHHHH
Confidence            321111110                             00011111223   344442   2222 22222222233455


Q ss_pred             hHHcHHHHHHhc----CCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          305 IAFYAPLLFRTI----GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       305 ~~~~~~~~~~~~----g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .....+.|+...    +.+....+.+.+.-.+..++...+..+  +.+|+|.|+.++++
T Consensus       239 fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~--li~rig~k~~Llla  295 (412)
T PF01306_consen  239 FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPW--LINRIGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHH--HHHhcChHhHHHHH
Confidence            555566666544    334456677788888888888888888  69999999877653

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.20  E-value=6.7e-10  Score=92.14  Aligned_cols=153  Identities=17%  Similarity=0.164  Sum_probs=115.1

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-------VNVYMLIFGR  142 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~r  142 (361)
                      .|++++.+|.|.+|...+.++-.+|..+| ++.|.+.|++|.+.++.+|.+...+|..+...+       .++|.+.+..
T Consensus        25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~  103 (250)
T PF06813_consen   25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL  103 (250)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH
Confidence            56678889999999999999999999875 888999999999999999999999998877653       4677887778


Q ss_pred             HHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          143 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       143 ~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      ++.|.+.+...+.+.....+.|| ++||++.++.-...+++..+-..+...+-..   ..-+..+.....+.++..+..+
T Consensus       104 ~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~  179 (250)
T PF06813_consen  104 FLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMF  179 (250)
T ss_pred             HHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhh
Confidence            88888877777777777778887 5899999999999999887665553333221   2334444444444444444445


Q ss_pred             cccCC
Q 018042          223 FLPET  227 (361)
Q Consensus       223 ~~~es  227 (361)
                      +++..
T Consensus       180 ~vr~~  184 (250)
T PF06813_consen  180 FVRPV  184 (250)
T ss_pred             heecc
Confidence            55443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.19  E-value=3.9e-10  Score=98.11  Aligned_cols=249  Identities=15%  Similarity=0.084  Sum_probs=162.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHH-HHHHHHHHHHHHHhhhhhh--H-HHHHHHHHHHHhhhhhhhhH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSV-LMGGAAFLAGSALGGAAVN--V-YMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l-~~~~~~~~~~~~~~~~~~~--~-~~~~~~r~l~G~~~~~~~~~  155 (361)
                      +.+..+...++..+..++-.|+.|.++|+.|+||.. -....+..++.+...++++  + +..++.-.+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            456678888888999999999999999999976554 4455556666666666654  4 44555578888888888899


Q ss_pred             HHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhccc---------------CCCcchHHHHHhhHHHHHHHHH-
Q 018042          156 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI---------------KGGWGWRVSLALAAVPASILTL-  219 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~wr~~~~~~~~~~~~~~~-  219 (361)
                      ..+++.+..++++-++..+.-.....+|+++.-+........               .+...-|..+.+.++.-++..+ 
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            999999999988877777665544455554443332111110               1233567777666655554443 


Q ss_pred             hcccccCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHh
Q 018042          220 GALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQV  299 (361)
Q Consensus       220 ~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (361)
                      .++..|+.++..    . + +++..          ....          ++.+.++++..+++    .+..+.+..+...
T Consensus       216 m~~~v~~~~~~~----~-~-~~~~l----------~~g~----------k~L~~t~k~i~~~~----~i~~FLiA~~~~~  265 (438)
T COG2270         216 MILNVHDAEKIS----S-P-PPTAL----------RNGF----------KELKSTFKEIRGRK----NLVLFLIARFFYI  265 (438)
T ss_pred             HHhccccccccc----c-c-chHHH----------HHHH----------HHHHHHHHHHhccc----chHHHHHHHHHHH
Confidence            334465554210    0 0 00000          0000          11123444544332    3334445555555


Q ss_pred             cchhhhHHcHHHHHH-hcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecccC
Q 018042          300 TGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  360 (361)
Q Consensus       300 ~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~~  360 (361)
                      -+.+.+......+-. ++|++..+...+.....+.+++|+++.|+  +.||+|.|+++..++
T Consensus       266 DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~--Ld~rfg~k~vl~~~l  325 (438)
T COG2270         266 DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGF--LDERFGSKPVLMIGL  325 (438)
T ss_pred             hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCceeehHHH
Confidence            677778888888876 77999999999999999999999999999  799999999887664

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.18  E-value=4e-10  Score=98.06  Aligned_cols=152  Identities=19%  Similarity=0.164  Sum_probs=135.3

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      .+++|++..+..++.....+..++|+++.|+|.||+|-|+++..+.++..+.++..-+......+.++-++.|...|..+
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            45789999999999999999999999999999999999999999999999999988888777778888999999999999


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCC
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET  227 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es  227 (361)
                      ....+|.++..|+++-++.+++++...-.++.+||.+-..+.+..+  +-|..+....++..+..+..+..|+.
T Consensus       360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence            9999999999999999999999999999999999999888887766  57777777666666666666667654

>TIGR00897 2A0118 polyol permease family

Probab=99.18  E-value=7.1e-10  Score=100.76  Aligned_cols=144  Identities=15%  Similarity=0.116  Sum_probs=108.3

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHH-HHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHhhh
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVL-MGGAAFLAGSALGGA-----AVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~  149 (361)
                      ++|.+..+.+.+.+...++..++.++.|+++||+|||+.+. .+.+...++.+....     .++.+.+++..++.|++.
T Consensus       251 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~  330 (402)
T TIGR00897       251 ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFL  330 (402)
T ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence            35778888888888999999999999999999999988764 333333333333222     245666777888899888


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      +...+ ....+.|..| ++|+++.++.+....+|..++|.+.+.+.+.   .||+..+++.+++.++..+...|+
T Consensus       331 ~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~---~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       331 AGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF---FGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHHHHHHh
Confidence            76544 4556677655 6899999999999999999999997776654   479999988887777766655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.16  E-value=2.4e-10  Score=105.98  Aligned_cols=146  Identities=14%  Similarity=0.060  Sum_probs=103.4

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchh-------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRK-------PSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGV  147 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  147 (361)
                      +++|++..+.+.+.+...++..++.++.|+++||+|||       ....+..++.++..++....++.+..++.-++.++
T Consensus       281 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~  360 (476)
T PLN00028        281 DRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI  360 (476)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            44588889999999999999999999999999999875       23333344444444455556666655556666677


Q ss_pred             hhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccccc
Q 018042          148 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  225 (361)
Q Consensus       148 ~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  225 (361)
                      +.+...+...+++.+..| ++|+...++...+..+|..+++.+-.    ..+..+|+..|++.+++.++..+..++++
T Consensus       361 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~----~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        361 FVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF----TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH----hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            666666666666777654 78999999988877788877776622    22234699999888877777666665554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.15  E-value=3.4e-09  Score=95.83  Aligned_cols=151  Identities=16%  Similarity=0.190  Sum_probs=111.6

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh----hH--H---HHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV----NV--Y---MLIFGRLL  144 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~----~~--~---~~~~~r~l  144 (361)
                      -++-|++.++..+.+....+...+..+++..+.||+|||+.++.+..++.+..++.....    ..  |   ..+++.++
T Consensus       297 ~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~  376 (485)
T KOG0569|consen  297 FKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFL  376 (485)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344488999999999999999999999999999999999999999999888888776541    11  1   12344444


Q ss_pred             HHhhhhhh-hhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-c
Q 018042          145 LGVGVGFA-NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-L  222 (361)
Q Consensus       145 ~G~~~~~~-~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~  222 (361)
                      ..++.+.. .|...-+.+|.+|++.|+.++++......+...+-...-..+.+..+   - +.|++..+++.+..+.. .
T Consensus       377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---~-~~filF~i~~~~~~i~~~~  452 (485)
T KOG0569|consen  377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---P-YVFILFVIPLAIFLIYLYR  452 (485)
T ss_pred             HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-hhhHHHHHHHHHHHHHHHH
Confidence            44444433 56677889999999999999999888888877665555444444332   2 66667777776666655 4


Q ss_pred             cccCCh
Q 018042          223 FLPETP  228 (361)
Q Consensus       223 ~~~es~  228 (361)
                      .+|||.
T Consensus       453 ~lPETk  458 (485)
T KOG0569|consen  453 YLPETK  458 (485)
T ss_pred             hCcccC
Confidence            599984

>TIGR00895 2A0115 benzoate transport

Probab=99.15  E-value=2.5e-10  Score=103.28  Aligned_cols=120  Identities=12%  Similarity=0.057  Sum_probs=99.1

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      .+++|.+.++.+...+...++..++.++.|+++||+|||+.+....+......++.....+.+.+++..++.|++.+...
T Consensus       277 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  356 (398)
T TIGR00895       277 MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQ  356 (398)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            34457788889999999999999999999999999999955444444333333333335677777888999999999999


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhh
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYG  193 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  193 (361)
                      +....++.|.+|+++|+++.++......+|..++|.+.+.
T Consensus       357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            9999999999999999999999999999999999998654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.12  E-value=1.9e-09  Score=99.51  Aligned_cols=145  Identities=13%  Similarity=0.044  Sum_probs=96.1

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh--chhHHH-HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSV-LMGGAAFLAGSALGGA--AVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~  149 (361)
                      ++.|++..+.+.....+.++..++.++.|+++||+  |||+.. .....+..++.+...+  ..+.+..+++.++.|.+.
T Consensus       282 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  361 (452)
T PRK11273        282 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLI  361 (452)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence            33477888888888888899999999999999999  555433 2222333333332222  234444445555555543


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHH-HHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGAL-AANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      .........+..|.+|++.|+++.++.+....+|.. .+|.+.+.+.+.   .||+..|++.++..++.++...
T Consensus       362 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~---~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        362 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH---hcchHHHHHHHHHHHHHHHHHH
Confidence            333333445678999999999999999887777754 467776665543   4799999887776666655443

>PRK10504 putative transporter; Provisional

Probab=99.11  E-value=1.6e-09  Score=100.69  Aligned_cols=120  Identities=13%  Similarity=0.008  Sum_probs=99.9

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHhhhhhhh
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA---VNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      +|.+..+.++......++..++.++.+++.||+|||+++..+.++..++..+..+.   ++.+.+.+..++.|++.+...
T Consensus       292 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  371 (471)
T PRK10504        292 LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRF  371 (471)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence            46788888988888888888899999999999999999999888887776665553   334444556778888888888


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                      +....++.+..|+++|+.+.++.+....+|..+++.+++.+..
T Consensus       372 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        372 SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999998888888766543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.11  E-value=2.5e-09  Score=96.52  Aligned_cols=136  Identities=13%  Similarity=0.053  Sum_probs=112.1

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      .|.+..+.+.+.+...++..+..++.+++.||+|+|+.+..+.+..+++.+..+..++.+.+++..++.|++.+...+..
T Consensus       235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  314 (382)
T PRK11128        235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA  314 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788889999998888999999999999999999999999999988888888888999999999999999999988999


Q ss_pred             HHHHHhcCCcccccchhhHHH-HHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHH
Q 018042          157 PLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  217 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  217 (361)
                      ..++.+. +++++++..+.+. ....+|..+++.+++.+.+..   ++ ..++..+++.++.
T Consensus       315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHH
Confidence            9998887 5566788888775 566778889999988777544   45 3455555554443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.10  E-value=1.1e-09  Score=97.91  Aligned_cols=120  Identities=13%  Similarity=0.021  Sum_probs=108.1

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHhhhhhhhhH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN-VYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      +|.+..+.+...+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+++..++.|++.+...+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  321 (365)
T TIGR00900       242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVP  321 (365)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4778889999999999999999999999999999999999888888888887777774 888888999999999999999


Q ss_pred             HHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          156 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                      ...++.|.+|+++|++..++.+....+|..+++.+++.+.+
T Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       322 QGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998776653

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.10  E-value=2.4e-09  Score=99.59  Aligned_cols=150  Identities=11%  Similarity=0.052  Sum_probs=112.4

Q ss_pred             ccccCCchhHHHHHH-HHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHh---hhh-hhHHHHHHHHHHHHhhh
Q 018042           75 NYCKFDSQLLTSFTS-SLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAA-VNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r~l~G~~~  149 (361)
                      +++|++.++.++... ...++..++.++.|+++||+|+|+.+.++.++..+..+..   +.. ++.+.+.+.-++..++.
T Consensus       251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~  330 (491)
T PRK11010        251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG  330 (491)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            345889999999874 5568999999999999999999988877666555444322   232 35555555566666666


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCC
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET  227 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es  227 (361)
                      |...+...++..+..+++.+++..++.+....+|..+++.+.+.+.+.   .||+..|.+.++..++..+...+++++
T Consensus       331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~---~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA---HGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666677788899999999999999999998999988777776666543   479999988888887776666555543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.10  E-value=2.9e-09  Score=97.70  Aligned_cols=149  Identities=13%  Similarity=0.017  Sum_probs=92.5

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh--h--hhhHHHHHHHHHHHHhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG--A--AVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~r~l~G~~~~  150 (361)
                      +++|.+..+.+...++..++..+++++.|+++||+|||+.+.++.++..+..+...  .  .++....+..-.+.+.+.+
T Consensus       272 ~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (432)
T PRK10406        272 NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVS  351 (432)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            34577888888888888888889999999999999999988776655433332211  1  1233322222222333334


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHH-HHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIG-IGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  226 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  226 (361)
                      ...+....+++|++|++.|+.+.++.+.... +.....|.+...+.. .  ..|...+++.++..++..+..+++++
T Consensus       352 ~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~--g~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        352 FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-I--GMETAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-h--CCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            4445667889999999999999999765433 333346666554432 1  13555666555555555555455443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.09  E-value=1.2e-08  Score=93.74  Aligned_cols=117  Identities=22%  Similarity=0.243  Sum_probs=97.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhhhhhhhhHHHH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-VNVYMLIFGRLLLGVGVGFANQSVPL  158 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~  158 (361)
                      +..+.+++.+...++..++.++.++++||+|+|+++..+.++.+++.+...+. .+.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777788889999999999999999999999999988888887776665 45667777788999999999999999


Q ss_pred             HHHhcCC-------cccccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          159 YLSEMAP-------ARYRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       159 ~~~e~~~-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                      +++|..+       ++.+|...++.+....+|..+++.+.+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999875       4567889999999999999999888776654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.09  E-value=1.5e-09  Score=99.49  Aligned_cols=120  Identities=13%  Similarity=0.050  Sum_probs=89.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh--hhhhhhH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG--VGFANQS  155 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~--~~~~~~~  155 (361)
                      |.+.++.+...+...++..++.++.|++.||+|||+.+..+.++..++.+.....++.....+.-++.|++  .....+.
T Consensus       262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (426)
T PRK12307        262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGL  341 (426)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHH
Confidence            66788888888999999999999999999999999999888877766655444332221122222333332  2233455


Q ss_pred             HHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhccc
Q 018042          156 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI  197 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  197 (361)
                      .+.++.|.+|+++|++++++......+|..++|.+.+.+.+.
T Consensus       342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             HHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence            667889999999999999999988899999999997777643

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.09  E-value=1.9e-09  Score=99.93  Aligned_cols=143  Identities=15%  Similarity=0.149  Sum_probs=125.2

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +++|.+....|++.+.+.+|..+|+++.+.+.+|+++++.+..+.++++++.+..+++++.+...+..++.|++......
T Consensus       247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~  326 (524)
T PF05977_consen  247 DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANS  326 (524)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHh
Q 018042          155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  220 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  220 (361)
                      ...+.+.+..|++.||++++++......+..+|..+.+.+.+.   .|-+..+.+.++..++..++
T Consensus       327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~---~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  327 SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH---FGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888888888887777754   36787877766554444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.08  E-value=3.6e-09  Score=95.95  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=116.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  157 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  157 (361)
                      +.+....+...+...+...++.+..+++.||+|||+.+.++.++.++...+...+++.+.+++.+++.|++.+.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            33556778888888888899999999999999999999999998888888878888999999999999999877777777


Q ss_pred             HHHHhcCCcccccchhhH-HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHh
Q 018042          158 LYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  220 (361)
Q Consensus       158 ~~~~e~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  220 (361)
                      .+..+..+++.++...+. ++....+|..+++.+++.+.+.   .||+..|.+.+++.++..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~---~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS---IGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh---cccHHHHHHHHHHHHHHHHH
Confidence            788888888888887766 6788899999999997777654   37999998877776665543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.07  E-value=5.8e-09  Score=95.78  Aligned_cols=123  Identities=15%  Similarity=0.045  Sum_probs=88.5

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHH-h---hhhhhHHHHHHHHHHHHhhhhh
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSAL-G---GAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~-~---~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      .+|++..+.++......++..++.++.|+++||+|||+.+..+.++..+.... .   ...+++..+.+..++.|++.+.
T Consensus       268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  347 (434)
T PRK15075        268 VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGS  347 (434)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            35778888888888888999999999999999999999987765544332211 1   1223444444556666777777


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHH-HHHHHHHHHHHHHHHhhhcccC
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGF-QFSIGIGALAANFINYGTEQIK  198 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~  198 (361)
                      ..+....++.|.+|+++|+.+.++. +.+..++..++|.+.+.+.+..
T Consensus       348 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        348 YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence            7777778899999999999999985 4444555667787766665543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.07  E-value=1.3e-09  Score=98.89  Aligned_cols=241  Identities=14%  Similarity=0.144  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh--hhhhhhHHHHHHHhcCCcc
Q 018042           90 SLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG--VGFANQSVPLYLSEMAPAR  167 (361)
Q Consensus        90 ~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~--~~~~~~~~~~~~~e~~~~~  167 (361)
                      ...+...+.++..|.++||||||..+....+...+..+...+.. +|.+ +   +.|+.  .+.......++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchh
Confidence            34567788999999999999999999999998888888777766 3333 3   33332  3455678889999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHH
Q 018042          168 YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQ  246 (361)
Q Consensus       168 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~  246 (361)
                      +|....++.......+..++|.++....+.   .+.-..|.+..+..++..+.. .++||+.....+.     ++ . ..
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~-----~~-~-~~  214 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF---LGIALVFLIAAASGILSLLYMLLFLPESLQEKERS-----DA-T-LR  214 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHhhccccccCccccc-----cc-c-cc
Confidence            999999999999999999999998877765   357777888877777776665 5589984211000     00 0 00


Q ss_pred             HhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHH-hcCCCChhhHH
Q 018042          247 RVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQ  325 (361)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~  325 (361)
                      +.....             .........++...+...++..+.......+..........-..+++++ ..|++..+.+.
T Consensus       215 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~  281 (463)
T KOG2816|consen  215 ELTPGS-------------LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD  281 (463)
T ss_pred             ccCCCc-------------ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH
Confidence            000000             0000001111111111111222222222222221111111112233443 55999999998


Q ss_pred             HhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          326 LSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       326 ~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +.+.....+.++.++.... +...+|.|++...|
T Consensus       282 ~~~~~~~~~~i~~l~~~~~-l~~~l~~~~~i~lG  314 (463)
T KOG2816|consen  282 LLSLVSILGIISQLLLLPL-LSSILGEKRLISLG  314 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHhhhhHhhHH
Confidence            9888888889998888864 67777877755544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.07  E-value=3.4e-09  Score=93.50  Aligned_cols=265  Identities=12%  Similarity=0.097  Sum_probs=167.9

Q ss_pred             ccCCchhHH-HHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           77 CKFDSQLLT-SFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        77 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      .|++.+++. -+.-...-.++...++...+.|..+.|++++++.+...+...+..+.++...+-+..+..|++.+. ...
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva  113 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA  113 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence            577877765 455666667788889999999999999999999999999999999999999999999999998765 667


Q ss_pred             HHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhC
Q 018042          156 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRK  235 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~  235 (361)
                      ..+|+-...|+++-.++.+...+...+|..++.++|..+... ++.+.+....+......+.++..+++|..++...-++
T Consensus       114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r  192 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-GGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR  192 (412)
T ss_pred             HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence            888998889998888889888888888888888887766653 3346777777766666666666677887765443333


Q ss_pred             CCHHHHHHHHHHhhCCcchHHHHHHHHHHHh-hhhhcccchhhhc---ccCchhHHHHHHHHHHHHHhcchhhhHHcHHH
Q 018042          236 SDHQKAKLMLQRVRGTNDVEAEFDDLLKASS-TAKTINHPFKKII---QRKYRPQLLMAMAIPFFQQVTGINVIAFYAPL  311 (361)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (361)
                      +..++.+....+....++.++..++.++..+ .....+..++.++   ++..+.+.++...+.+....++++-+..|...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~  272 (412)
T PF01770_consen  193 KPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQS  272 (412)
T ss_pred             cCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            2111111000000000000000000000000 0000011111221   22233355555666666677777777777777


Q ss_pred             HHHhc---CCCChhhHHHhhhhhhcccccccchhh
Q 018042          312 LFRTI---GLGRLKVCQLSKWIECGGSIGFGRNMW  343 (361)
Q Consensus       312 ~~~~~---g~s~~~~~~~~~~~~~~~~~g~~~~~~  343 (361)
                      ..++.   +-...-.|.+-+...+.+.++.+..|.
T Consensus       273 LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~  307 (412)
T PF01770_consen  273 LWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGY  307 (412)
T ss_pred             HHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhH
Confidence            77666   223334455555556666666666666

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.04  E-value=2.4e-09  Score=110.26  Aligned_cols=140  Identities=14%  Similarity=0.087  Sum_probs=116.9

Q ss_pred             ccccCCch-hHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           75 NYCKFDSQ-LLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        75 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      +.+|.+.. +.+++.+...++.+++.++.|+++||+++++.+.++.++.+++.++..+..+.+.++++.++.|++.+...
T Consensus       261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  340 (1146)
T PRK08633        261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFI  340 (1146)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            34577888 89999999999999999999999999999999999988888888888888888888889999999999999


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHH
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASI  216 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~  216 (361)
                      +...+++.+..|++.|++++++.+....+|.++++.++..+...  ..++...+++.+.+.++
T Consensus       341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--GLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888777776655431  13565566555544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.02  E-value=1.2e-08  Score=92.34  Aligned_cols=141  Identities=14%  Similarity=0.027  Sum_probs=105.8

Q ss_pred             cccCCchhHHHHHHHHH-HHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHhh
Q 018042           76 YCKFDSQLLTSFTSSLY-VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA------AVNVYMLIFGRLLLGVG  148 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~  148 (361)
                      |.|++.++.+++..... ....++.++.|++.||+|+|+.+..+.++..+..+....      .++...+.....+.+++
T Consensus       237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (390)
T TIGR02718       237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI  316 (390)
T ss_pred             hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence            35889999999888776 466778999999999999999998877665333322221      22334444555666777


Q ss_pred             hhhhhhHHHHHHHhcCCc-ccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHH
Q 018042          149 VGFANQSVPLYLSEMAPA-RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  219 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~-~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  219 (361)
                      .+...+.....+.+..++ +++++.+++.+....+|..+++.+++.+.+.   .|++..|...+++.++..+
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---FGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHH
Confidence            777777888887777776 7899999999999999999999998877654   3788888887776655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.02  E-value=7.6e-09  Score=90.89  Aligned_cols=149  Identities=10%  Similarity=0.052  Sum_probs=120.8

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-VNVYMLIFGRLLLGVG  148 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~  148 (361)
                      .|.+++..|++.+..++..-.+.++..+|..+.|++.|| +.|+.+.....+..+..+...+. .+.+..++.-++.|+.
T Consensus       235 ~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a  313 (394)
T COG2814         235 RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFA  313 (394)
T ss_pred             HHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            444566679999999999999999999999999999999 99999888877777776666554 5556666667778887


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      .+.........+++ ..++.+..+.+++...+++|..+|..+++.+.+.   .|+....++.++..++.....+.
T Consensus       314 ~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~---~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         314 FSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA---LGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             hhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHH
Confidence            77666666666677 4467899999999999999999999998887754   58999999988888777766544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.00  E-value=4.5e-09  Score=96.47  Aligned_cols=145  Identities=17%  Similarity=0.104  Sum_probs=99.0

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh--ch-hHHHHH---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GR-KPSVLM---GGAAFLAGSALGGAAVNVYMLIFGRLLLGVG  148 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Gr-r~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  148 (361)
                      +++|++..+.+...+.+.++..++.++.|+++||+  ++ |+....   +.++..+...... ..+.....+..+..|++
T Consensus       272 ~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~  350 (434)
T PRK11663        272 ETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFF  350 (434)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHH
Confidence            45688888999999999999999999999999999  33 332222   2222222222222 22333333344445544


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      ...........+.|.+|+++|++++++.+....+|..++|.+.+.+.+   +.||+..|++.+++.++..+..++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~---~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        351 VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE---IWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH---hcccHHHHHHHHHHHHHHHHHHHH
Confidence            332233345667899999999999999999999999999998766654   357999998888877776655543

>PRK09848 glucuronide transporter; Provisional

Probab=98.99  E-value=3.6e-08  Score=90.92  Aligned_cols=119  Identities=12%  Similarity=0.051  Sum_probs=94.7

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhhhhhhhh
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +|.+....++......++..++.++.+++.||+|+|+++.++.++..++.++..+.+  +.+.+++..++.|+|.+...+
T Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~  338 (448)
T PRK09848        259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT  338 (448)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            454555444444445677888999999999999999999999988888877776643  667777778899999999999


Q ss_pred             HHHHHHHhcCCcc-------cccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          155 SVPLYLSEMAPAR-------YRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       155 ~~~~~~~e~~~~~-------~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      ...++.+|..|.+       ++|...++.+....+|..+++.+.+.+.
T Consensus       339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988754       3588889999999899988888766554

>PRK10054 putative transporter; Provisional

Probab=98.99  E-value=6.5e-09  Score=94.17  Aligned_cols=147  Identities=11%  Similarity=0.036  Sum_probs=111.5

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhhhhhhhhHH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-VNVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      +.+....+.+.+...+......++.|.+.||+++|+.+..++.+..++.+...++ ++.+.+.+..++.|++.+...+..
T Consensus       240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~  319 (395)
T PRK10054        240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGE  319 (395)
T ss_pred             chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4456677777777777777778899999999999999999988888887777664 567777778899999998888888


Q ss_pred             HHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc-cccCCh
Q 018042          157 PLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETP  228 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~  228 (361)
                      ..++.+..|++.|+.+.+..+ ...+|..+||.+++.+.+.   .|.+..|++.+....+..+..+ -..|.|
T Consensus       320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT---LPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH---cChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            899999999999999888655 4557999999998877754   3666677665444443333332 244443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.98  E-value=5.8e-09  Score=85.84  Aligned_cols=146  Identities=13%  Similarity=0.048  Sum_probs=110.9

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA-AFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  152 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  152 (361)
                      ++.||+|+...+.+.+....-.++.+++.|.++||+|++...+.+.+ ...++-....+  +.+.=..+..+.|+..+..
T Consensus       292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysll  369 (459)
T KOG4686|consen  292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLL  369 (459)
T ss_pred             HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHH
Confidence            67789999999999999999999999999999999999977666544 44444444433  3333345667788888777


Q ss_pred             hhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc
Q 018042          153 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       153 ~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      .......++...|+++-|++.+..+...++|..+-+++++.+....+.+.|--.|.+......+..+..
T Consensus       370 AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgi  438 (459)
T KOG4686|consen  370 ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGI  438 (459)
T ss_pred             HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            777788888899999999999999999999999999999888876665566555554433333333333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.96  E-value=1.3e-08  Score=92.30  Aligned_cols=140  Identities=12%  Similarity=0.039  Sum_probs=106.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHH-hhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTR-AFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPL  158 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  158 (361)
                      ++.+.+++.+...++...+..+.+++.| |++.++.+..+.++..++.++.+.+++++.+.+..++.+++.+...+...+
T Consensus       241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~  320 (400)
T PRK11646        241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET  320 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence            5567788777777766655556666665 466677777888888888888888888888877888899998888889999


Q ss_pred             HHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcch-HHHHHhhHHHHHHHHH
Q 018042          159 YLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGW-RVSLALAAVPASILTL  219 (361)
Q Consensus       159 ~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w-r~~~~~~~~~~~~~~~  219 (361)
                      ++.|..|+++|++++++.+....+|..++|.+++.+.+..+..+. ...++..++..++..+
T Consensus       321 ~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (400)
T PRK11646        321 LSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLL  382 (400)
T ss_pred             HHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888765432232 3444444444444433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.95  E-value=3.8e-08  Score=89.56  Aligned_cols=139  Identities=13%  Similarity=0.040  Sum_probs=104.6

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~  149 (361)
                      +++|.+..+.++......++..++.++.++++||+|+|+.+.++.++..++.++....     .+.+.++++.++.|++.
T Consensus       244 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~  323 (406)
T PRK15402        244 SGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGI  323 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence            3457788888888887888889999999999999999999998888777777666543     35666777888999998


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHH
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  217 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  217 (361)
                      +...+........ .++++|++..+.++....+|..+|+.++..+...   .++....+..++..++.
T Consensus       324 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        324 GLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG---GGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccC---CchHHHHHHHHHHHHHH
Confidence            8877766665544 3458899999999999999999999887665543   34555444444443333

>TIGR00896 CynX cyanate transporter

Probab=98.94  E-value=1.8e-08  Score=90.04  Aligned_cols=122  Identities=16%  Similarity=0.003  Sum_probs=95.8

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      .|.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++..++.+...+.++..... .-++.|++.+...+.
T Consensus       227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~  305 (355)
T TIGR00896       227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPL  305 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHH
Confidence            477888999999999999999999999999999 567777778787877777666655443332 456789999888888


Q ss_pred             HHHHHHhcCC-cccccchhhHHHHHHHHHHHHHHHHHhhhcccCC
Q 018042          156 VPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIKG  199 (361)
Q Consensus       156 ~~~~~~e~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  199 (361)
                      ....+.+..+ +++++...++.+....+|..++|.+.+.+.+..+
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777766554 4567888888888888888899988877776544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.93  E-value=5.7e-08  Score=84.75  Aligned_cols=131  Identities=11%  Similarity=0.047  Sum_probs=101.5

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      .+|++.++.+...+.+..+..+|.++.+++.||+|+|+.+.++.++..++.++....++... ..+-++.|++.+..+|.
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT  250 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999998888888877766655544333 34566889999999999


Q ss_pred             HHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHH
Q 018042          156 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAV  212 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~  212 (361)
                      ..+...+..|++ .+.+.++. ....+|..+.|++.+.+.+.   .|.+..+++..+
T Consensus       251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~---~g~~~a~~v~~~  302 (310)
T TIGR01272       251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC---LGIQLAFALPVP  302 (310)
T ss_pred             HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh---ccchHHHHHHHH
Confidence            999998888754 45566665 45568888899876666543   367777764443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.92  E-value=1.3e-08  Score=90.84  Aligned_cols=105  Identities=10%  Similarity=0.081  Sum_probs=88.7

Q ss_pred             ccCCchhHHHHHHHHH-HHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHH
Q 018042           77 CKFDSQLLTSFTSSLY-VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----------VNVYMLIFGRLL  144 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l  144 (361)
                      +|++.++.+.+.++.. ++..++.+++|++.||+|||+.+..+.++..++..+..+.           ++.+.+..+.++
T Consensus       239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (356)
T TIGR00901       239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITL  318 (356)
T ss_pred             cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence            5788889888777655 5778999999999999999999998888887776655443           456777788999


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHH
Q 018042          145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIG  181 (361)
Q Consensus       145 ~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~  181 (361)
                      .+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       319 EAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            9999999999999999999999999999999876543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.92  E-value=1.5e-08  Score=88.30  Aligned_cols=145  Identities=19%  Similarity=0.176  Sum_probs=109.8

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh--chhHHH-HHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSV-LMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVG  148 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~l-~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~  148 (361)
                      .|..|+|....++..+.+-.+...|.++.|+++||+  |||... ++.++...++.+..-.++  |+++..++-++.|+.
T Consensus       280 ~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~  359 (448)
T COG2271         280 SEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL  359 (448)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            344588999999999999999999999999999996  777554 444444444444444454  458888889999988


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHH-HHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      .-+..-.......|..|++--|.+.|+...+..+ |.+.+...   +....+.+||...|++..+.+++..+..
T Consensus       360 IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~---~g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         360 IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP---LGYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc---ceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            7776777778889999999999999999887777 77777666   3333344799999987666666555444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.91  E-value=1.4e-08  Score=93.32  Aligned_cols=149  Identities=13%  Similarity=0.026  Sum_probs=95.0

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHH---HHHHHHhhh--hhhHHHHHHHHHHHHhhhh
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAF---LAGSALGGA--AVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~---~~~~~~~~~--~~~~~~~~~~r~l~G~~~~  150 (361)
                      ..|.+..+.++....+.++..++.++.|+++||+++++....+....   .++.+....  ..+.+...+..++.|++..
T Consensus       281 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  360 (438)
T TIGR00712       281 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIY  360 (438)
T ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHc
Confidence            34778888899999999999999999999999996543222232221   112222111  1233433344445555432


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHHHH-HHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCC
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIG-ALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPET  227 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es  227 (361)
                      ...........|.+|+++|+.+.++.+....+| ..++|.+.+.+.+.   .||...+++.....++..+.. .+.||.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       361 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            222223346789999999999999998776665 56788887666643   368888887666665555544 345654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.90  E-value=2.2e-08  Score=93.41  Aligned_cols=121  Identities=10%  Similarity=0.060  Sum_probs=103.7

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----AVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~  150 (361)
                      +.+|.+..+.++......++..++.++.|++.||+|||+.+..+.++..++..+..+    ..+.+.+....++.|++.+
T Consensus       284 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~  363 (485)
T TIGR00711       284 QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMG  363 (485)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence            335778999999999999999999999999999999999999999888888877662    2355667777899999999


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      ...+.......+..|+++|+.+.++.+....+|..+++.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       364 CFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             HHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888899999999999999999999999988855543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.90  E-value=2.9e-08  Score=86.16  Aligned_cols=134  Identities=25%  Similarity=0.349  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHhhhhhhhhHHHHH
Q 018042           82 QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN--VYMLIFGRLLLGVGVGFANQSVPLY  159 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~~~~~~~~~~~  159 (361)
                      ...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+...+..+  .+.+++.|++.|++.+...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            46889999999999999999999999999998888888766666666666665  8899999999999999999999999


Q ss_pred             HHhcCCc-ccccchhhHHHH-HHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHH
Q 018042          160 LSEMAPA-RYRGAINNGFQF-SIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASI  216 (361)
Q Consensus       160 ~~e~~~~-~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~  216 (361)
                      +.|++|+ ++|+...+.... ...+|..+++.++..+... ...+||+.+.........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence            9999997 678888888777 5778888888776666655 556899977666555433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.89  E-value=3.3e-08  Score=89.24  Aligned_cols=143  Identities=8%  Similarity=0.009  Sum_probs=102.8

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG-AAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      +.+|.+.++.+.+.+...++..++.++.|++.||+|+|+.+..+..+..++.++.. ..++.+..++..++.+++.....
T Consensus       228 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  307 (382)
T PRK10091        228 FISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALS  307 (382)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence            34578889999999999999999999999999999999999988888777775554 34555666666667777655444


Q ss_pred             hHHHH-HHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc
Q 018042          154 QSVPL-YLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       154 ~~~~~-~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      ++... ...+..+++.++..  ..+....+|..+||.+++.+.+..  .+|++.+.+.++..++.....
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        308 APLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHHHH
Confidence            44443 34444444445443  346677889999999987766532  378888888776666554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.89  E-value=1e-08  Score=93.37  Aligned_cols=134  Identities=11%  Similarity=0.024  Sum_probs=89.9

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPS-VLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      +.+..+.+...+...++..++.++.|+++||++||+. .....++..++.++.....+....+++-.+.+++.....+..
T Consensus       275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  354 (412)
T TIGR02332       275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIF  354 (412)
T ss_pred             CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHH
Confidence            4567788888999999999999999999999997764 344444444433322222222222222223333333333444


Q ss_pred             HHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHH
Q 018042          157 PLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVP  213 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~  213 (361)
                      .....|.+|+++|+.+.++.+....+|.+++|.+.+.+.+..+  +|++.+++.++.
T Consensus       355 ~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--~~~~~~~~~~~~  409 (412)
T TIGR02332       355 WTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--SFNSGLWFVAAL  409 (412)
T ss_pred             HhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--CCchhHHHHHHH
Confidence            4555788999999999999999999999999998655554332  588888776554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.89  E-value=1e-07  Score=84.72  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=118.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLY  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~  159 (361)
                      +++..|.+.+...+.-.+.-.+..++.+|+|.|+.++++.++..+=.+.++++++.+.+.+.+.+-|+-.+........|
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY  336 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccchhhH-HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-ccC
Q 018042          160 LSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  226 (361)
Q Consensus       160 ~~e~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  226 (361)
                      +++.+|+|..++...+ .+....+|..+.+.+++.+.+   +.|.+..|++.+.+.+...+...+ +++
T Consensus       337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd---~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD---RIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh---hcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence            9999999887776666 467888888888888766664   457888888877776666655544 543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.89  E-value=7.3e-08  Score=87.30  Aligned_cols=141  Identities=11%  Similarity=-0.016  Sum_probs=106.8

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      .+++|++.++.+.......++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++.+...
T Consensus       244 ~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~  323 (394)
T PRK10213        244 MNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVP  323 (394)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence            34457888889999999999999999999999999654443443333344444554566777888888999999999989


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHH
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT  218 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~  218 (361)
                      +....++.+..| +++++..+.......+|..+|+.+++.+.+.   .|++..+...+...++..
T Consensus       324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~---~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        324 VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN---IGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHHH
Confidence            989988998887 5566777777788889999999998887653   468887777665544443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.89  E-value=8.1e-08  Score=86.65  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=91.9

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~  149 (361)
                      +++|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+..+..++.++....     ++...++...++.|++.
T Consensus       235 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  314 (385)
T TIGR00710       235 DIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGN  314 (385)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            3457788899999999999999999999999999999999988887777776665543     23445555678889999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHH-HHHHHHHHHHH
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSI-GIGALAANFIN  191 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~-~~g~~~~~~~~  191 (361)
                      +...+....+..|..| ++|+++.++.+... ..|.+.++.++
T Consensus       315 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       315 SMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888899899886 67899999877655 45666666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.88  E-value=2.3e-08  Score=102.91  Aligned_cols=136  Identities=15%  Similarity=0.008  Sum_probs=109.3

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh--------------------hhH
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--------------------VNV  135 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~  135 (361)
                      .+|.+..+.+++.+.+.++.+++.++.|+++|+.++++.+..+.++..++.+..++.                    ++.
T Consensus       255 ~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (1140)
T PRK06814        255 TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHG  334 (1140)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccccc
Confidence            357788999999999999999999999999998887776666666555555444432                    677


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHH
Q 018042          136 YMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVP  213 (361)
Q Consensus       136 ~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~  213 (361)
                      +.++++.++.|++.+...+...+++.+.+|+++||+++++.+....+|..+++++.+.+....  .+....+++.++.
T Consensus       335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--~~~~~~~~~~~~~  410 (1140)
T PRK06814        335 WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--FSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHH
Confidence            788888999999999999999999999999999999999999999999999998877665322  2566666554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.87  E-value=3.4e-08  Score=92.27  Aligned_cols=122  Identities=14%  Similarity=-0.068  Sum_probs=104.4

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA---AVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~  150 (361)
                      ++.+|.+..+.+.......++..++.++.|++.||+|+|+.+..+.++..++.++...   .++.+......++.|++.|
T Consensus       287 q~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g  366 (495)
T PRK14995        287 QFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAA  366 (495)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHH
Confidence            4445889999999999999999999999999999999999999888888777665543   2456666777899999999


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      ...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        367 SALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999889999999999999999999999999999999988865543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.87  E-value=5.2e-08  Score=90.40  Aligned_cols=150  Identities=14%  Similarity=0.065  Sum_probs=98.2

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHH--------HHHHHHHH--HHHHHHhhh-hhhHHHHHHHHH
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPS--------VLMGGAAF--LAGSALGGA-AVNVYMLIFGRL  143 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~--------l~~~~~~~--~~~~~~~~~-~~~~~~~~~~r~  143 (361)
                      +.+|.+..+.++..++..++..++.++.|+++||+++|+.        +..+....  .+..+.... ..+.+..+++-.
T Consensus       290 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (465)
T TIGR00894       290 WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT  369 (465)
T ss_pred             HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            3457788999999999999999999999999999875521        11111111  111111111 234444444455


Q ss_pred             HHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          144 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       144 l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      +.+.+.+...+.......|..| +.+|...++.+....+|..++|.+.+.+.+..+..+|+..|.+.++..++..+...+
T Consensus       370 l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       370 LANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            5555555555555555566666 489999999999999999999988665544322235999998888777776665554


Q ss_pred             cc
Q 018042          224 LP  225 (361)
Q Consensus       224 ~~  225 (361)
                      ++
T Consensus       449 ~~  450 (465)
T TIGR00894       449 FG  450 (465)
T ss_pred             ee
Confidence            43

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.86  E-value=6e-08  Score=87.81  Aligned_cols=120  Identities=10%  Similarity=-0.109  Sum_probs=98.5

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +.+|.+..+.|.+.+...++..+++++.+++.||.++|+++..+. +.++..+..++.++++...+.-++.|++.+...+
T Consensus       234 ~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~  312 (393)
T PRK11195        234 VALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVV  312 (393)
T ss_pred             HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence            345778999999999999999999999999999999998887775 3444455556677777777788899999888888


Q ss_pred             HHHHHHHhcCCccc-ccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          155 SVPLYLSEMAPARY-RGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       155 ~~~~~~~e~~~~~~-R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      +..+.+.|..|++. +|++.++.+....+|..++..+...+.
T Consensus       313 ~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        313 PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            88888888766654 799999999999999888888876554

>TIGR00788 fbt folate/biopterin transporter

Probab=98.86  E-value=3.4e-08  Score=91.31  Aligned_cols=152  Identities=8%  Similarity=-0.019  Sum_probs=120.1

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh----------hhhHHHHHHHHHH
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----------AVNVYMLIFGRLL  144 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~r~l  144 (361)
                      +.+|.++++.|.......++.+++....+.+.+|++.|+++.++.++.+++.+....          .++.+.++...++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            457899999999999999999999999999999999999999999999888755431          1344455566889


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHH-hhHHHHHHHHH
Q 018042          145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG----GWGWRVSLA-LAAVPASILTL  219 (361)
Q Consensus       145 ~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~wr~~~~-~~~~~~~~~~~  219 (361)
                      .+++.+....+...++.+..|+++++...++.....++|..+++.+++.+.+..+    +++.++... ++.+..++...
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~  440 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP  440 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887776433    233333333 34444444444


Q ss_pred             hcccccC
Q 018042          220 GALFLPE  226 (361)
Q Consensus       220 ~~~~~~e  226 (361)
                      ..+++|+
T Consensus       441 ~~~llP~  447 (468)
T TIGR00788       441 LLHLLPR  447 (468)
T ss_pred             HHHhCCC
Confidence            4456886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.85  E-value=8.9e-08  Score=87.04  Aligned_cols=144  Identities=11%  Similarity=0.043  Sum_probs=98.7

Q ss_pred             cccccCCchhHHHHHHHHH-HHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHh---hhh-hhHHHHHHHH----HH
Q 018042           74 SNYCKFDSQLLTSFTSSLY-VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAA-VNVYMLIFGR----LL  144 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r----~l  144 (361)
                      .+++|++.++.+++.+... ++..++.++.|++.||+|||+.+..+.++..+..+..   +.. ++.+.++++-    +.
T Consensus       237 ~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  316 (402)
T PRK11902        237 IRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLC  316 (402)
T ss_pred             HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            3445888899999876554 5688999999999999999998877776665554333   333 3555555544    45


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       145 ~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      .|++.+...+....++.+.+|.+.+    +..+...++|.+.++.+++.+.+.   .||+..|.+.++++++..++.+..
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~---~G~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        317 GGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEA---YGWPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHH
Confidence            5666677777777888888776654    444444556666555566555543   489999999888877766555433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.85  E-value=1.2e-08  Score=94.24  Aligned_cols=152  Identities=16%  Similarity=0.083  Sum_probs=134.7

Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc--hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           72 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG--RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        72 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      +..++.+.+..+...+.++..+...++.++.|+++|+..  ++.+..++.++.+++.+..+++++++.++..-.+.|++.
T Consensus       323 ~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~  402 (509)
T KOG2504|consen  323 SYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCV  402 (509)
T ss_pred             HHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            335566889999999999999999999999999999987  567778888889999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccccc
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  225 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  225 (361)
                      |.........+.|....++-..+.++.....+++..+||++++.+.+..+  +|...|+.+++..++....+++.|
T Consensus       403 g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  403 GSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence            99998888999999999999999999999999999999999887766654  588899998888887777666665

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.84  E-value=2.4e-07  Score=88.07  Aligned_cols=147  Identities=15%  Similarity=0.202  Sum_probs=115.0

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHH
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAVN--------VYMLIFGRLLL  145 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~r~l~  145 (361)
                      +.+|++.+....+...+....-+.+++.|.++|++ ||++++.++.++..++..+.+++..        ....+++-.+.
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi   95 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI   95 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence            34577888888888888888888999999999985 9999999999999999888776421        23356778888


Q ss_pred             HhhhhhhhhHHHHHHHhcCCccc---ccchhhHHHHHHHHHHHHHHHHHhhhcccC----CCcchHHHHHhhHHHHHHHH
Q 018042          146 GVGVGFANQSVPLYLSEMAPARY---RGAINNGFQFSIGIGALAANFINYGTEQIK----GGWGWRVSLALAAVPASILT  218 (361)
Q Consensus       146 G~~~~~~~~~~~~~~~e~~~~~~---R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~wr~~~~~~~~~~~~~~  218 (361)
                      ++|.|..-+...+...|.+++++   |-....++..+.++|+.+++.+...+....    ...+|...|.+.++..++..
T Consensus        96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~  175 (654)
T TIGR00926        96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL  175 (654)
T ss_pred             HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence            89999999999999999998654   556777788888999988888866655321    23479999988887777665


Q ss_pred             Hhc
Q 018042          219 LGA  221 (361)
Q Consensus       219 ~~~  221 (361)
                      +..
T Consensus       176 lvf  178 (654)
T TIGR00926       176 IVF  178 (654)
T ss_pred             HHH
Confidence            544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.84  E-value=1.4e-07  Score=84.99  Aligned_cols=149  Identities=18%  Similarity=0.247  Sum_probs=115.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-hhHHHHHH----HHHHHHhhhhhhh
Q 018042           79 FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-VNVYMLIF----GRLLLGVGVGFAN  153 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~r~l~G~~~~~~~  153 (361)
                      .+.+..+.+.++..+.-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+    ...+.|+..+..+
T Consensus       240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~  319 (400)
T PF03825_consen  240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH  319 (400)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence            456667777777777778888999999999999999999999999988888776 45444333    3456999999999


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHH-HHHHHHHHHHHHHhhhcccCCC---cchHHHHHhhHHHHHHHHHhc-ccccCC
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQF-SIGIGALAANFINYGTEQIKGG---WGWRVSLALAAVPASILTLGA-LFLPET  227 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~---~~wr~~~~~~~~~~~~~~~~~-~~~~es  227 (361)
                      .....|+.+..|++.|+++.++++. ..++|..+|..+++.+.+..+.   ..|...+.+.+++.++..+.. ++++|+
T Consensus       320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999775 5789999999998887764331   245566666666666555554 446554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.82  E-value=1.7e-07  Score=83.95  Aligned_cols=140  Identities=13%  Similarity=0.064  Sum_probs=91.4

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhch---hHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR---KPSVLM-GGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      |.+.+ .+...++..+...++   .++++||..|   |+.... ..++..+.....+...+....++.-.+.|++....+
T Consensus       223 g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  298 (368)
T TIGR00903       223 GLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAY  298 (368)
T ss_pred             CCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhH
Confidence            44543 455554544444444   4677777654   333332 344444444444555555555555667777777777


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccC
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  226 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  226 (361)
                      +...++.+|.+|++.|+++.++.+....+|.+.+|.+...+..     +-+..|.+.+++.++..+..+++++
T Consensus       299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----SAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7888999999999999999999999999999888888654442     5666777767766666655544454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.81  E-value=4.9e-08  Score=86.78  Aligned_cols=115  Identities=20%  Similarity=0.304  Sum_probs=99.3

Q ss_pred             cccccCC-chhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHhhh
Q 018042           74 SNYCKFD-SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV---NVYMLIFGRLLLGVGV  149 (361)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~  149 (361)
                      .+++|.+ ..+.+...+...++..++.++.|+++||+|+|+..........+..+......   +....++.-++.|++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  313 (352)
T PF07690_consen  234 QEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGF  313 (352)
T ss_dssp             CHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4556778 78889999999999999999999999999998888777777777766665543   4567777888999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHH
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAAN  188 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~  188 (361)
                      +...+....++.|.+|+++|+++.++.+....+|..++|
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  314 GIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=3.5e-08  Score=84.34  Aligned_cols=129  Identities=14%  Similarity=0.082  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccc
Q 018042           92 YVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA  171 (361)
Q Consensus        92 ~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~  171 (361)
                      .+.-.-|.++.+.+.||+|||+++..+.++++++.++.....+...+.+.-+..-++....+.+.+.|..|.+|..-|+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            45567789999999999999999999999999999888776555444444444455556667788899999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccccc
Q 018042          172 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  225 (361)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  225 (361)
                      +.|.-....-+|.++.|+++.....     .-..+..+.+...++..+...++|
T Consensus       471 gvGtcSsmaRIggI~~p~iA~~~e~-----s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIAMRAEL-----STSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHHHHhcc-----ceeehHHHHHHHHHHHHHHheeee
Confidence            9999999999999999999732221     222344455555566666666665

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.78  E-value=3.6e-08  Score=88.52  Aligned_cols=131  Identities=18%  Similarity=0.121  Sum_probs=94.2

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-hhHHHH-HHH-HHHHHHHHHhhh--hhhHHHHHHHHHHHHhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-RKPSVL-MGG-AAFLAGSALGGA--AVNVYMLIFGRLLLGVG  148 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-rr~~l~-~~~-~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~  148 (361)
                      ++++|.+..+.+...+...++..++.++.|++.||++ ||+... ... ....++......  ..+.....+..++.|+.
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  323 (379)
T TIGR00881       244 TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFL  323 (379)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence            3445778889999999999999999999999999864 333222 221 222222222222  34555566667777876


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHH
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSL  207 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~  207 (361)
                      .....+....+..|.+|+++|+++.++.+....+|..+++.+.+.+.+.   .||++.|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f  379 (379)
T TIGR00881       324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG---FGWAGAF  379 (379)
T ss_pred             HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh---hcccccC
Confidence            6666666778899999999999999999999999999999997776643   4677653

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.78  E-value=6.4e-07  Score=83.21  Aligned_cols=116  Identities=13%  Similarity=0.098  Sum_probs=88.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHhhhhhhhh
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-----AVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +.+..+.+.+...++..++.+++++++||+|+|+.+.++..+.+++.+....     ..+.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777888999999999999999999999888776666555432     34566777778889999999999


Q ss_pred             HHHHHHHhcCCc-------ccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          155 SVPLYLSEMAPA-------RYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       155 ~~~~~~~e~~~~-------~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      ...++++|..+.       +..|...+......-+|..+++.+.+.+.
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999662       22355778888888888888777766554

>PRK10133 L-fucose transporter; Provisional

Probab=98.76  E-value=2.5e-07  Score=84.98  Aligned_cols=136  Identities=8%  Similarity=-0.043  Sum_probs=103.4

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      ++.+|+++.+.++....+.++..++.++.+++.||+|||+++..+.++..++.++..+.++.. .+..-.+.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999999888888777776666655543 3456778999999999


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcc-hHHHHHhhHHHHH
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWG-WRVSLALAAVPAS  215 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-wr~~~~~~~~~~~  215 (361)
                      |...+...|.+++ +.+.+.++..... +|..++|.+.+.+.+.   .| -|..|++..+..+
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l~~~---~g~~~~~~~v~~~~~~  423 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFVSDA---AGNIPTAELIPALCFA  423 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHHHHh---ccchHHHHHHHHHHHH
Confidence            9999999998875 4566777765433 5666666665555543   34 6777765544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.74  E-value=3e-08  Score=86.52  Aligned_cols=146  Identities=14%  Similarity=0.043  Sum_probs=109.4

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-------VNVYMLIFGRLLLG  146 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G  146 (361)
                      +++|+.+..+.+.....+.+...+.-+..|+++||+|.++++......+.++..+....       ++...+++.-+..+
T Consensus       246 ~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~  325 (417)
T COG2223         246 VTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALF  325 (417)
T ss_pred             HHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHH
Confidence            45578899999999999999999999999999999999999998888888888777665       34444444444555


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      ++.|.....+..++...+|+ +-|.+.++.....++|...-|..-+...+..+  .+...|++.....++..+..+
T Consensus       326 ~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         326 VFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             HHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHH
Confidence            55555555566777777764 67888999999999998777766554444443  588888887777666665544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.71  E-value=4.6e-07  Score=82.10  Aligned_cols=114  Identities=13%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +++|.+..+.+.+.+...++..++.++.+++.||+|||+.+..+.++..++.+...+.++.+..+..-.+.+.+.+...+
T Consensus       232 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  311 (392)
T PRK10473        232 EQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFG  311 (392)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            34577888899999999999999999999999999999999999998888888877776665545544555554444433


Q ss_pred             HHHHHHHhcCCccccc-chhhHHHHHHHHHHHHHHHH
Q 018042          155 SVPLYLSEMAPARYRG-AINNGFQFSIGIGALAANFI  190 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~-~~~~~~~~~~~~g~~~~~~~  190 (361)
                      .  ....+..|.++|+ .+.++...+..+|..+++.+
T Consensus       312 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l  346 (392)
T PRK10473        312 V--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWL  346 (392)
T ss_pred             H--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence            3  2334455555553 33333433334444444333

>PRK09669 putative symporter YagG; Provisional

Probab=98.69  E-value=3.1e-06  Score=78.00  Aligned_cols=114  Identities=18%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 018042           83 LLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA--AVNVYMLIFGRLLLGVGVGFANQSVPLYL  160 (361)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  160 (361)
                      ..+.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+  ..+.+.+++..++.|++.+...+...+++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667777889999999999999999998887766654433222  35677778888999999999999999999


Q ss_pred             HhcCCcc-------cccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          161 SEMAPAR-------YRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       161 ~e~~~~~-------~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                      +|..+.+       ..|...+.......+|..+++.+++.+..
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998632       23456677777778888888877765543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.67  E-value=1.3e-06  Score=78.75  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=83.0

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh---h-hhhHHHHHHHHHHHHhhhhh
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---A-AVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~~~  151 (361)
                      ++|.+.++.+...+...++..++.++.|++.||+|||+.+..+..+..+..+...   . ..+.+...++-.+.+.+.+.
T Consensus       224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T PRK11102        224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSM  303 (377)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3577889999999999999999999999999999999999888766444333222   1 22455555555555555555


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHH-HHHHHHHHHHHHHh
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQF-SIGIGALAANFINY  192 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~  192 (361)
                      .......++.|..| ++|+.+.++... ...+|..+++.++.
T Consensus       304 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        304 ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56666677788776 789998888654 45677777776643

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.67  E-value=5.7e-08  Score=88.69  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-----chhHHHHHHHHHHHHHHHHhhhh----hhHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-----GRKPSVLMGGAAFLAGSALGGAA----VNVYMLIF  140 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~  140 (361)
                      .|-+++++|+++++...+.+...+-..+ .++.|.++|-+     -||+-++++.++..++.+..+..    .+.....+
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            3445777899999988888777766654 67889999986     35666666777776655555543    35666677


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhcCCc--ccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHH
Q 018042          141 GRLLLGVGVGFANQSVPLYLSEMAPA--RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT  218 (361)
Q Consensus       141 ~r~l~G~~~~~~~~~~~~~~~e~~~~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~  218 (361)
                      .-++..+|.+.....+-+.+.|....  +.||...+.......+|.+++..+++.+.+.   .++|..|.+.+++..+..
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHHHH
Confidence            77888999999999999999999843  3366777777788888999888887666543   468888888777666665


Q ss_pred             Hhccc-ccC
Q 018042          219 LGALF-LPE  226 (361)
Q Consensus       219 ~~~~~-~~e  226 (361)
                      +..++ .+|
T Consensus       169 ~~~~~~~~e  177 (433)
T PF03092_consen  169 IVALFLLEE  177 (433)
T ss_pred             HHHHHhhhh
Confidence            55544 444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.63  E-value=2.4e-08  Score=87.82  Aligned_cols=133  Identities=20%  Similarity=0.112  Sum_probs=102.1

Q ss_pred             HHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhh----H----HHHHHHHHHHHhhhhhhhhHHHHHHHhcC
Q 018042           93 VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN----V----YMLIFGRLLLGVGVGFANQSVPLYLSEMA  164 (361)
Q Consensus        93 ~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~----~----~~~~~~r~l~G~~~~~~~~~~~~~~~e~~  164 (361)
                      +++..|-.+...++|++|||+..+.|.+++.+..+..+...|    .    ..+.+..++.-+|   .......+-+|.|
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~F  435 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIF  435 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhc
Confidence            344457777889999999999999999999999999988766    1    2223334444443   3345556679999


Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHhhhcc--cCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 018042          165 PARYRGAINNGFQFSIGIGALAANFINYGTEQ--IKGGWGWRVSLALAAVPASILTLGALFLPETP  228 (361)
Q Consensus       165 ~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  228 (361)
                      |.+.|+...++..+..-+|.+++...-....+  .....+-|+.+++.+.+..+..+..+++||+.
T Consensus       436 ParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  436 PARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             hHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence            99999999999999999999998877444443  11145889999999999888888888999984

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.59  E-value=4.8e-07  Score=82.99  Aligned_cols=115  Identities=21%  Similarity=0.153  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018042           82 QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVGFANQSVPLY  159 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~  159 (361)
                      +..+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+  |.+.+++.-++.|++.+...+...++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            5667778888999999999999999999999999999999999999988886  99999999999999999999999999


Q ss_pred             HHhcCCcc-------cccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          160 LSEMAPAR-------YRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       160 ~~e~~~~~-------~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                      ++|..+.+       ..|...+.......+|..+++.+.+.+..
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            99998742       34778888888888888887777665543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.56  E-value=3.4e-06  Score=64.79  Aligned_cols=115  Identities=19%  Similarity=0.145  Sum_probs=94.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLY  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~  159 (361)
                      ++..--.-.++......+++++.+.+.+++|.|+.+++|.+...+-.... +-++.+.++.+-.+.|++.+..++....+
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~y  113 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTY  113 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence            33333344566667778888999999999999999999999888655543 56778889999999999999999999999


Q ss_pred             HHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          160 LSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       160 ~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      +.+..+++.|++..+++......+.++|.++...+.
T Consensus       114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.56  E-value=2.7e-06  Score=73.03  Aligned_cols=150  Identities=18%  Similarity=0.107  Sum_probs=112.0

Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           71 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        71 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      |.+-.|-|+|+.+.|.+.+...+.....++....+.+|. .+|+..+..++++.++.+.+.+.|.-..+.- -++.|+|.
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~  310 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQ  310 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCcc
Confidence            344455589999999999999999999999999999975 7888888888888888888877765443333 48999999


Q ss_pred             hhhhhHHHHHHHhcCCcccc-cchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          150 GFANQSVPLYLSEMAPARYR-GAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      |..++....++.+-.+..++ +.-.++.+....+=..+||.+.+.+-+..+  +|+......+..++...+.-+.
T Consensus       311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999988765544 333344444333334567777766666555  8998887777766666555443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.55  E-value=1.6e-06  Score=78.87  Aligned_cols=134  Identities=13%  Similarity=-0.056  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh-h-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 018042           88 TSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-A-----VNVYMLIFGRLLLGVGVGFANQSVPLYLS  161 (361)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~  161 (361)
                      ..+..+...+..+++|+++||+|+|+++.++.+...++...... .     .+++.+.+..+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            34456777888999999999999999999888777776543221 1     24566666555555666666667777777


Q ss_pred             hcCCc---------------------ccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHh
Q 018042          162 EMAPA---------------------RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  220 (361)
Q Consensus       162 e~~~~---------------------~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  220 (361)
                      +.+|+                     ++-|.+.|+......+|..+.|.+-+...+..+  ++...|+...+..+++..+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~  449 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPVGAMKVFLIFYIVCVLL  449 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHH
Confidence            77774                     134567777778888877777755333333333  5777787777766666655


Q ss_pred             ccc
Q 018042          221 ALF  223 (361)
Q Consensus       221 ~~~  223 (361)
                      .+.
T Consensus       450 ~w~  452 (462)
T PRK15034        450 TWL  452 (462)
T ss_pred             HHH
Confidence            543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.55  E-value=1.9e-06  Score=80.49  Aligned_cols=138  Identities=10%  Similarity=0.024  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHhh----HHHHHhhchhHHHHHHHHHHHHHHHHhhhhhh---------HHHHHHHHHHHHhhhh
Q 018042           84 LTSFTSSLYVAGLVASFVA----SSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN---------VYMLIFGRLLLGVGVG  150 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~----g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~~  150 (361)
                      .+++.++..+...+..++.    +++.+|++.++.+.+|.++.+++.+..+.+.+         .++++...++.|+|+.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            3445555555555555555    55666666668889999999999888777655         4678889999999999


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc--c----C-CCcchHHHHHhhHHHHHHHHHhc
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ--I----K-GGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~--~----~-~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      ...|...+++.+..|++.||++++++..+..+|..++..+......  .    . ...+..+.|...++.+++..++.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888888887777542211  0    0 01135677766666655444433

>PRK11043 putative transporter; Provisional

Probab=98.54  E-value=3.8e-06  Score=76.32  Aligned_cols=119  Identities=9%  Similarity=-0.066  Sum_probs=88.4

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHh---hh--hhhHHHHHHHHHHHHhhhh
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GA--AVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~~~~~r~l~G~~~~  150 (361)
                      ++|.+..+.++......++..++.++.+++.||+|+|+.+....+...++.+..   ..  .++.+.+++...+.|++.+
T Consensus       232 ~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (401)
T PRK11043        232 QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANG  311 (401)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            357788888988888888889999999999999999987665554444433322   11  3455555666778888888


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      ..++.......|..| ++|+++.++.+.....+...++.+.+.+.
T Consensus       312 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        312 AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            888888888778776 57999999998877767667766655443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.54  E-value=2.4e-06  Score=79.34  Aligned_cols=136  Identities=14%  Similarity=0.094  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhch-----hHHH--HHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHHHh
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGR-----KPSV--LMGGAAFLAGSALGGA---------AVNVYMLIFGRLLLGV  147 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-----r~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~  147 (361)
                      .+++.+...+...+.+++..++-.+.+|     +...  .+|+++.+++....++         ..|+++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            5667777777777777775554444443     3333  7788888888777664         4689999999999999


Q ss_pred             hhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          148 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       148 ~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      |+....|...++++|..|++.||++++++.....+|..+++.+.......   .+|...|...++..++..++.+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP---QGVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998886655432   3688787776666665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.45  E-value=7.6e-06  Score=73.83  Aligned_cols=116  Identities=20%  Similarity=0.217  Sum_probs=92.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhhhhhhhhH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      |.++.+..+.......+.+++.++...+++|+|+|+++.++.++.+++.++..+.+  +.+..++..++.+++.+...+.
T Consensus       268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l  347 (467)
T COG2211         268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL  347 (467)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence            33555666777777788888899999999999999999999999999999988876  7788888899999999999999


Q ss_pred             HHHHHHhcCCc-----ccc--cchhhHHHHHHHHHHHHHHHHHhh
Q 018042          156 VPLYLSEMAPA-----RYR--GAINNGFQFSIGIGALAANFINYG  193 (361)
Q Consensus       156 ~~~~~~e~~~~-----~~R--~~~~~~~~~~~~~g~~~~~~~~~~  193 (361)
                      ..++++|..+-     ..|  |...+......=+|..++..+.+.
T Consensus       348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999887752     222  566667777666777666655443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.41  E-value=6.4e-07  Score=80.53  Aligned_cols=143  Identities=14%  Similarity=0.099  Sum_probs=118.3

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      |.+-.+...|........+-++.-++.+++.+|+|+-+++..++.+..+=.+..+...|.|+.+-..+++|+..+..+.+
T Consensus       400 d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa  479 (618)
T KOG3762|consen  400 DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAA  479 (618)
T ss_pred             hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHH
Confidence            33445666677777777888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccccchhhHHHH-HHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc
Q 018042          156 VPLYLSEMAPARYRGAINNGFQF-SIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       156 ~~~~~~e~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      +.+|++...|++.|..+.++.+. ..++|--+|.++++.+...   .+-|..|.+.++.+++.++..
T Consensus       480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998664 5577777777777666544   367777777666665555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.41  E-value=1.2e-05  Score=73.00  Aligned_cols=118  Identities=14%  Similarity=0.037  Sum_probs=89.4

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHH-HHHHHhhh--hhhHHHHHHHHHHHHhhhhhhh
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFL-AGSALGGA--AVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      +|.+..+.+++.....++..++.++.+++.||++++........... +.......  ..+.+.++++.++.|++.+...
T Consensus       238 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  317 (394)
T PRK11652        238 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLF  317 (394)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            57788888998888888999999999999999985443332222222 22222222  2356677778899999999999


Q ss_pred             hHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          154 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      +....+..|.+| ++++...++.+....+|..+++.++..+.
T Consensus       318 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        318 PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999887 57899999999999999999998876654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=2.1e-05  Score=70.96  Aligned_cols=107  Identities=19%  Similarity=0.122  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcc
Q 018042           88 TSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPAR  167 (361)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~  167 (361)
                      .++......+++++++.+.|+.|.|+.+.++........+..-+ +|-+-++++-.+.|+|.+..+.....|++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            67777888999999999999999999999999998887776655 55677889999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          168 YRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       168 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      .+.+..++.......+.++|.++-....
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            9999999888888888888776644444

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.39  E-value=7.4e-07  Score=60.10  Aligned_cols=69  Identities=13%  Similarity=0.064  Sum_probs=64.3

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYML  138 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (361)
                      .|.+++|.++|.++.+++.+...+|+.+|.+...++.++..+++.+..+.+...+.++.+++.++.+.+
T Consensus        15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            778899999999999999999999999999999999999888999999999999999999998887754

Note that many members are hypothetical proteins.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.38  E-value=6.5e-06  Score=76.55  Aligned_cols=138  Identities=12%  Similarity=0.060  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhchhHH-------HHHHHHHHHHHHHHhh-----h-----hhhHHHHHHHHHHHHh
Q 018042           85 TSFTSSLYVAGLVASFVASSVTRAFGRKPS-------VLMGGAAFLAGSALGG-----A-----AVNVYMLIFGRLLLGV  147 (361)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~-------l~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~r~l~G~  147 (361)
                      .++.+...+...+..++.+++.||+|+|+.       +.+|+++.+++.+..+     .     ..+++.++..-++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            445555666777888889999999999973       6677777666654321     1     1357778888999999


Q ss_pred             hhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCC-------CcchHHHHHhhHHHHHHHHHh
Q 018042          148 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG-------GWGWRVSLALAAVPASILTLG  220 (361)
Q Consensus       148 ~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~wr~~~~~~~~~~~~~~~~  220 (361)
                      |++...++..+++.+..|++.++.+++++.....+|..++..++.......+       .....+.|...++..++..++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888754431110       112456666655555554444


Q ss_pred             cc
Q 018042          221 AL  222 (361)
Q Consensus       221 ~~  222 (361)
                      .+
T Consensus       472 ~~  473 (489)
T PRK10207        472 MA  473 (489)
T ss_pred             HH
Confidence            43

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.38  E-value=2.3e-05  Score=73.60  Aligned_cols=141  Identities=18%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhH-------------HHHHHHHHHHHhhhhh
Q 018042           85 TSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNV-------------YMLIFGRLLLGVGVGF  151 (361)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~r~l~G~~~~~  151 (361)
                      .....+..+...++..+...+.||+|||+.++.+...+.++.++.+.....             ..+...-+........
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g  411 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG  411 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence            445555566667777888999999999999999999999999888764221             1111122222222233


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhH-HHHHHHH-HhcccccCCh
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAA-VPASILT-LGALFLPETP  228 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~-~~~~~~~-~~~~~~~es~  228 (361)
                      ..+....+.+|.+|.+.|+++.++......+...+-...   ........++...|.... +..+... ....++||+.
T Consensus       412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~---~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF---FPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            344555688999999999999988766555554433222   111111112334444433 3333333 3556799984

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.37  E-value=7.4e-07  Score=78.58  Aligned_cols=120  Identities=17%  Similarity=0.231  Sum_probs=92.8

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh----hchhHHHHH-HHHHHHHHHHHhhhhhh---------------
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRKPSVLM-GGAAFLAGSALGGAAVN---------------  134 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~l~~-~~~~~~~~~~~~~~~~~---------------  134 (361)
                      ++.|++....+.+--...+...+.+++.|..+||    |||||.++. +.....++.++..++.+               
T Consensus        60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~  139 (498)
T KOG0637|consen   60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP  139 (498)
T ss_pred             HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence            3447788887777777778888999999999996    898876655 55666677777776543               


Q ss_pred             --HHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccc-hhhHHHHHHHHHHHHHHHHHhhh
Q 018042          135 --VYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA-INNGFQFSIGIGALAANFINYGT  194 (361)
Q Consensus       135 --~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~-~~~~~~~~~~~g~~~~~~~~~~~  194 (361)
                        ...++++.-+.-++.-....++-+++.|...+++|.+ +++++....++|+.+|...+.+.
T Consensus       140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence              2345555566666777889999999999998877777 99999999999999988887543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=1.2e-06  Score=76.08  Aligned_cols=144  Identities=13%  Similarity=0.031  Sum_probs=114.4

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc--hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG--RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      .+..+..+.|+..--..+.+.+++.+.|.++||++  |-.....+++..++.+....+++++.++++-++..+++.+...
T Consensus       300 ~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~d  379 (464)
T KOG3764|consen  300 TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLAD  379 (464)
T ss_pred             hccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHH
Confidence            34445557777777788899999999999999999  6555566777777778888889999999999999999988888


Q ss_pred             hHHHHHHHhcCCcccc------cchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          154 QSVPLYLSEMAPARYR------GAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       154 ~~~~~~~~e~~~~~~R------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      ......+.+..+.++-      |...++...++++|..+||.+++.+.+.   .|++|...+.++..++-..+..
T Consensus       380 asl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~---iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  380 ASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA---IGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             HHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee---hhHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777765543      5677888999999999999998777654   4799998888777776665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.35  E-value=6.8e-05  Score=66.06  Aligned_cols=150  Identities=16%  Similarity=0.126  Sum_probs=120.4

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHH-hhchhHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHH
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR-AFGRKPSVLMGGAAFLAGSALGGA---AVNVYMLIFGRLLL  145 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~  145 (361)
                      +|.=.+-||++..+...++..+..|..++-...|++.. |.+.++.-.+++....++..+..+   ..+.+.+..+-++.
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~  311 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLL  311 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            55557778999999999999999999999999998888 577778877888877777665443   46788999999999


Q ss_pred             HhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhccc----C---CCcchHHHHHhhHHHHHHHH
Q 018042          146 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI----K---GGWGWRVSLALAAVPASILT  218 (361)
Q Consensus       146 G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~---~~~~wr~~~~~~~~~~~~~~  218 (361)
                      |++.|.......+.+.|...+++.|..++.+.....++..++..+++.+.+.    .   ...++-..|.+.++..++..
T Consensus       312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~  391 (403)
T PF03209_consen  312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAAL  391 (403)
T ss_pred             HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888888888877766642    1   22356666666665544444


Q ss_pred             H
Q 018042          219 L  219 (361)
Q Consensus       219 ~  219 (361)
                      .
T Consensus       392 ~  392 (403)
T PF03209_consen  392 V  392 (403)
T ss_pred             H
Confidence            3

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.34  E-value=8e-09  Score=95.40  Aligned_cols=150  Identities=17%  Similarity=0.090  Sum_probs=90.3

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh--h--h-hh----HHHHHHHHHH
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG--A--A-VN----VYMLIFGRLL  144 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~--~--~-~~----~~~~~~~r~l  144 (361)
                      .++.+.+..  -.......+...++.++...+.||+|||+.++.+.++..++++..+  .  . .+    -...++.-.+
T Consensus       280 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  357 (451)
T PF00083_consen  280 FENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLAL  357 (451)
T ss_pred             ccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeee
Confidence            344454554  2222333345566777778999999999999999988888877664  1  1 11    1112222222


Q ss_pred             HHhhhh-hhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHH-Hhcc
Q 018042          145 LGVGVG-FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT-LGAL  222 (361)
Q Consensus       145 ~G~~~~-~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~-~~~~  222 (361)
                      ...+.+ ...+....+..|.+|.+.|+++.++......++..+++.+.   ....+..+-...+.+.+.+.++.. +..+
T Consensus       358 ~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~---~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  358 FFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLF---PYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccchhhHHHHHHHHhheeE
Confidence            222222 33455668889999999999999998887777777776663   333232231233444444444444 4457


Q ss_pred             cccCCh
Q 018042          223 FLPETP  228 (361)
Q Consensus       223 ~~~es~  228 (361)
                      ++|||.
T Consensus       435 ~lpET~  440 (451)
T PF00083_consen  435 FLPETK  440 (451)
T ss_pred             EEeeCC
Confidence            799984

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.33  E-value=5.6e-05  Score=69.07  Aligned_cols=116  Identities=6%  Similarity=-0.009  Sum_probs=86.4

Q ss_pred             CchhHHHHHHHHHHHHHHH-HHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh----h---------------------
Q 018042           80 DSQLLTSFTSSLYVAGLVA-SFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA----V---------------------  133 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~----~---------------------  133 (361)
                      +.+.+.++.+...+...+. .++.+++++|++|++.+-.....+.....++++.    +                     
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4467888888777776655 8889999999999999877776666666665553    1                     


Q ss_pred             ------hHHHHHHHHHHHHhhhhhhhh-HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          134 ------NVYMLIFGRLLLGVGVGFANQ-SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       134 ------~~~~~~~~r~l~G~~~~~~~~-~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                            +.|...+.-+...+-...... .-..+++|.++.++-.+..+++..+.++|.++++.+...+.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  123333444445554444444 67789999999999899999999999999999998866665

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.30  E-value=2e-06  Score=77.02  Aligned_cols=108  Identities=16%  Similarity=0.093  Sum_probs=80.2

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh--hh--hHHHHHHHHHHHHhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA--AV--NVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~r~l~G~~~~  150 (361)
                      +.+|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+......+..+..+  .+  +.+...+.-.+.+++.|
T Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  333 (366)
T TIGR00886       254 DQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSG  333 (366)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence            345778889999999999999999999999999999998877776666555544433  22  55555555555666666


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHHHH
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIG  183 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g  183 (361)
                      ...+....++.|..| ++||.+.++.+....+|
T Consensus       334 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       334 AGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             cccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            666667777888887 68999999887765544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.30  E-value=6.4e-06  Score=75.48  Aligned_cols=146  Identities=14%  Similarity=0.100  Sum_probs=97.5

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhch---------hHHHHHHHHHHHHHHHHhhhhhh--H-HHHHHHHHH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR---------KPSVLMGGAAFLAGSALGGAAVN--V-YMLIFGRLL  144 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr---------r~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~r~l  144 (361)
                      +|++..+.|+++++..+...+..+++|+++||.-+         |..-.++....+++.+..++.++  . ..+++.-+-
T Consensus       289 L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~  368 (466)
T KOG2532|consen  289 LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIA  368 (466)
T ss_pred             hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHH
Confidence            58899999999999999999999999999999744         22334455556666666666552  2 122222221


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          145 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       145 ~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      .++. |...+....-..|. .+++-+..+++.+....+..+++|.+.+.+....+...||+.|++.+++.++..+...++
T Consensus       369 ~~~~-g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  369 IGLS-GFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHc-ccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            2221 11121122222222 457788999999999999999999996666642234589999999988888777665443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.30  E-value=2.3e-05  Score=71.42  Aligned_cols=131  Identities=8%  Similarity=-0.059  Sum_probs=96.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLY  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~  159 (361)
                      +....+...+.+..+..+|.++.+++.||+++|+++.+..++..+.+++..+.++... ..+-++.|++.+..+|+..+.
T Consensus       267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl  345 (410)
T TIGR00885       267 TAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGI  345 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666666788999999999999999999999999988888888888776544 566778888899999999999


Q ss_pred             HHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCC--Cc-chHHHHHhhHHH
Q 018042          160 LSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG--GW-GWRVSLALAAVP  213 (361)
Q Consensus       160 ~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~-~wr~~~~~~~~~  213 (361)
                      ..+..+++.+. +.+...++ .+|..+.|++.+.+.+..+  +. +.+..|++..+.
T Consensus       346 ~~~~~g~~~~~-~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       346 ALKGLGQDTKY-GAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHhhhhhhhhh-hHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            99999866542 23333333 3899999999887776321  11 356666654433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11462 putative transporter; Provisional

Probab=98.28  E-value=7.4e-05  Score=69.15  Aligned_cols=112  Identities=14%  Similarity=0.052  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 018042           83 LLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVGFANQSVPLYL  160 (361)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~~  160 (361)
                      ..+.+.+.+.++.+++.+++++++||+|+|+.+..+..+..+..++..+.+  +...+++.-++.|++.+...+...+++
T Consensus       264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~  343 (460)
T PRK11462        264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM  343 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777888899999999999999999987765554444333333322  233344455677887777777777788


Q ss_pred             HhcCCc-----ccc--cchhhHHHHHHHHHHHHHHHHHhhh
Q 018042          161 SEMAPA-----RYR--GAINNGFQFSIGIGALAANFINYGT  194 (361)
Q Consensus       161 ~e~~~~-----~~R--~~~~~~~~~~~~~g~~~~~~~~~~~  194 (361)
                      +|..+.     .+|  |...+......-+|..+++.+++.+
T Consensus       344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877662     233  4444555566666666666555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.24  E-value=3.7e-05  Score=70.59  Aligned_cols=142  Identities=17%  Similarity=0.038  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhch-hHHHHHHHHHHHHHHHHhhhhhh---------------------HHHHHHHHH
Q 018042           86 SFTSSLYVAGLVASFVASSVTRAFGR-KPSVLMGGAAFLAGSALGGAAVN---------------------VYMLIFGRL  143 (361)
Q Consensus        86 ~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r~  143 (361)
                      +....+.+...+.+++..++.+++|+ |++..++.++.+++.....+.++                     .+..++.-.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            33444445556777888899999994 77778888888887777765443                     367778889


Q ss_pred             HHHhhhhhhhhHHHHHHHhcCCcc--cccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc
Q 018042          144 LLGVGVGFANQSVPLYLSEMAPAR--YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       144 l~G~~~~~~~~~~~~~~~e~~~~~--~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      +.|+..+..+..=++++++..+++  +.|..+|+.+.+..+..++..+..+.+....++ +-.+.+.+.++..++..+..
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-GNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CCeeHHHHHHHHHHHHHHHH
Confidence            999999999999999999999954  459999999999999999888766664444432 44667788888888877766


Q ss_pred             cc-ccCCh
Q 018042          222 LF-LPETP  228 (361)
Q Consensus       222 ~~-~~es~  228 (361)
                      ++ +|+++
T Consensus       468 ~~~~~~~~  475 (477)
T TIGR01301       468 LILLPRPR  475 (477)
T ss_pred             HHhCCCCC
Confidence            44 77764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.12  E-value=0.00017  Score=68.00  Aligned_cols=134  Identities=23%  Similarity=0.182  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHHHhhhhhhhhHHHHHHHhcCCccc
Q 018042           92 YVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYM---LIFGRLLLGVGVGFANQSVPLYLSEMAPARY  168 (361)
Q Consensus        92 ~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~  168 (361)
                      ...........+...|++|||.....+.++..+++++.++..+...   ..+...+...+.+..+.....+.+|.+|+..
T Consensus       360 ~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~  439 (521)
T KOG0255|consen  360 GLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV  439 (521)
T ss_pred             HHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            3345556666689999999999999999999999999998765443   5555666666677777778999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHH-HhcccccCChh
Q 018042          169 RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT-LGALFLPETPN  229 (361)
Q Consensus       169 R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~-~~~~~~~es~~  229 (361)
                      |..+.+.......+|.+++|.+.........  .+....  .+....+.. +...++||+..
T Consensus       440 r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  440 RNTAVGAISAAARLGSILAPLFPLLLRQMFP--LLGLIL--FGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchHHH--HHHHHHHHHHHHHhcCcccCC
Confidence            9999999999999999999999765554322  222222  233333443 34477999853

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.09  E-value=0.00032  Score=63.50  Aligned_cols=254  Identities=11%  Similarity=0.006  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh--------h----hHHHHHHH---HHHHHhhhhhh-hh
Q 018042           91 LYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--------V----NVYMLIFG---RLLLGVGVGFA-NQ  154 (361)
Q Consensus        91 ~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--------~----~~~~~~~~---r~l~G~~~~~~-~~  154 (361)
                      -.+..++.++..|.+.||..|.+++..+.+..-++..+.+..        +    +.+....+   -.+.|...-.. ..
T Consensus        47 ~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~  126 (432)
T PF06963_consen   47 RSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIA  126 (432)
T ss_pred             HHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            345567778888999999999998766655543333322211        1    11222222   12222211111 11


Q ss_pred             HHHHHHHhcC------CcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccc---
Q 018042          155 SVPLYLSEMA------PARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFL---  224 (361)
Q Consensus       155 ~~~~~~~e~~------~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~---  224 (361)
                      ...+.=.||.      +++.+.+.++...-.-.+..+++|++.+.+..   ..+.+....+.+...++..+.= +++   
T Consensus       127 ~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t---~~s~~~~~~~i~~~N~~S~~vEy~~l~~V  203 (432)
T PF06963_consen  127 NTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMT---FASPVIAAIFIAGWNLASVFVEYFLLARV  203 (432)
T ss_pred             hhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112223442      23334555555555666678888888665543   2356666555555555443322 111   


Q ss_pred             -cCChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchh
Q 018042          225 -PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGIN  303 (361)
Q Consensus       225 -~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (361)
                       ...|. +..+++++++.......  ...+.+.+....+...+.-+....+|+..++++...+.+- ..+.++..    .
T Consensus       204 Y~~~P~-L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~a-lalLY~TV----L  275 (432)
T PF06963_consen  204 YNSVPA-LAVKKRSSESESSSDEE--SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFA-LALLYFTV----L  275 (432)
T ss_pred             HHhChH-hcCCCCCcccccccccc--ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHH-HHHHHHHH----h
Confidence             22232 22222211111110000  0000001111111111112223456777777644333332 22222222    2


Q ss_pred             hhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          304 VIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       304 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      .+...+..|+...|+++...+..-....+.++.|.+...+  +.+|+|..+.-.
T Consensus       276 sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~--l~~riGlvr~G~  327 (432)
T PF06963_consen  276 SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPW--LMKRIGLVRAGL  327 (432)
T ss_pred             cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchhhHH
Confidence            3355666677777999999999999999999999999999  699999766543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.00015  Score=63.58  Aligned_cols=126  Identities=10%  Similarity=0.071  Sum_probs=102.0

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      .|.+..+.....+.+..+.++|.++..++..|+...|.+....++..+.++..+++++...+ .+-++.|+..+..+|+.
T Consensus       267 ~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTI  345 (422)
T COG0738         267 LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTI  345 (422)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999886554 45678889999999999


Q ss_pred             HHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHH
Q 018042          157 PLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLA  208 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~  208 (361)
                      .+...+..+ ++ ....+..-....+|..+.|.+.+.+.+..   +-...+.
T Consensus       346 fslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~---g~~~~~~  392 (422)
T COG0738         346 FSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMF---GIQLTFL  392 (422)
T ss_pred             HHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhh---hhHHHHH
Confidence            999999998 33 33444445556677788888877776543   4555554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.93  E-value=0.00061  Score=62.21  Aligned_cols=122  Identities=11%  Similarity=0.035  Sum_probs=77.2

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG-----AAVNVYMLIFGRLLLGVG  148 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~r~l~G~~  148 (361)
                      ++.+|.+..+.++.......+..++..+.+.+.++.++++.......+..++.++..     ..++++..+++.++.++|
T Consensus       246 ~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G  325 (413)
T PRK15403        246 IDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFG  325 (413)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence            334578999999988878888888888888876555444433222222222222222     123343456778888999


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                      .+...+......- .-....+|++.++.+.....+...++..++++..
T Consensus       326 ~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~  372 (413)
T PRK15403        326 IGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWF  372 (413)
T ss_pred             HHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877775332 1222347888888888777777777777666644

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.88  E-value=4e-05  Score=71.76  Aligned_cols=149  Identities=14%  Similarity=0.081  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHhhchh-HHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018042           83 LLTSFTSSLYVAGLVASFVASSVTRAFGRK-PSVLMGGAAFLAGSALGGA--AVNVYMLIFGRLLLGVGVGFANQSVPLY  159 (361)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr-~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~  159 (361)
                      ..++....+.++..+++.+.|.+..+++|- +.++++.+++.+++-+++.  .+|....+..-++.|++.|....+....
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            467788888889999999999999988764 4555676666654433333  3466666777899999999988888887


Q ss_pred             HHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc--cC------------------------------C--------
Q 018042          160 LSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ--IK------------------------------G--------  199 (361)
Q Consensus       160 ~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~------------------------------~--------  199 (361)
                      ..-..|+++-+.+.++....-.+|..++..+-..+-.  ..                              +        
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~i  509 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAI  509 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhC
Confidence            8778898888999998888877777666655322110  00                              0        


Q ss_pred             -------------------CcchHHHHHhhHHHHHHHHHhcccccCChhHH
Q 018042          200 -------------------GWGWRVSLALAAVPASILTLGALFLPETPNSL  231 (361)
Q Consensus       200 -------------------~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~  231 (361)
                                         ..++|+.|+....+.++..+..+|++|..+.+
T Consensus       510 PGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m  560 (599)
T PF06609_consen  510 PGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM  560 (599)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence                               02678888888888888888888888765433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.00025  Score=65.49  Aligned_cols=130  Identities=11%  Similarity=0.056  Sum_probs=87.1

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh----hchhHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHhhhhh
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRKPSVLMGGAAFLAGS-ALGGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      .|.+..+.+.+.+.+.++.+++.+++|+++||    ..+|..+...+.+..+.. +......+.......-+....+...
T Consensus       304 ~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~  383 (495)
T KOG2533|consen  304 GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIA  383 (495)
T ss_pred             CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHH
Confidence            36788999999999999999999999999999    777777777666655544 4444444344444444455555666


Q ss_pred             hhhHHHHHHHhcCCccccc-chhhHHHHHHHHHHHHHHHHHhhhccc-CCCcchHHHHHh
Q 018042          152 ANQSVPLYLSEMAPARYRG-AINNGFQFSIGIGALAANFINYGTEQI-KGGWGWRVSLAL  209 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~-~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~wr~~~~~  209 (361)
                      ..+......++...++.|. ...+....+.+.+.++++.+   .... ...++|.+.|..
T Consensus       384 ~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~---~~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  384 TAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL---FRSLDAPRYGWGAVFYM  440 (495)
T ss_pred             HHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh---cccccCcchhhhhHHHH
Confidence            6777778888887766553 34445555666666655555   3322 233577777733

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.75  E-value=0.0008  Score=61.66  Aligned_cols=121  Identities=10%  Similarity=0.177  Sum_probs=106.3

Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHhhH-HHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 018042           73 ISNYCKFDSQLLTSFTSSLYVAGLVASFVAS-SVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      +...++++..+.+.+.+.......+++++.. .+...+|-|+++..|+..-.+...+.+++++.|+++....+.++. ..
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~  346 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GI  346 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cc
Confidence            4667899999999988888888888888887 777778999999999999999999999999999999998888875 56


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhh
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGT  194 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  194 (361)
                      ..+...+.++-+.+++++|++.++....-.+..++++.+-..+
T Consensus       347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            7888899999999999999999999999999888888874444

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.74  E-value=0.00011  Score=49.13  Aligned_cols=48  Identities=10%  Similarity=0.197  Sum_probs=42.4

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHH
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAF  122 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~  122 (361)
                      ++.|++..++|.+.++..+...++++++|.++||+++++.++....++
T Consensus        28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            446899999999999999999999999999999999998877765543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.69  E-value=0.0022  Score=59.41  Aligned_cols=134  Identities=13%  Similarity=0.087  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhch--hH-----HHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHHh
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGR--KP-----SVLMGGAAFLAGSALGGAA---------VNVYMLIFGRLLLGV  147 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Gr--r~-----~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~  147 (361)
                      .++..++..+...+.+|+.+++-.|.+|  |.     =+.+|+++.+++.+...++         .+.+++++.-++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            4566777777777778887777677633  21     1567777777776655431         366778889999999


Q ss_pred             hhhhhhhHHHHHHHhcCCcccccchhhHHHHH-HHHHHHHHHHHHhhhcccC---------CCcchHHHHHhhHHHHHHH
Q 018042          148 GVGFANQSVPLYLSEMAPARYRGAINNGFQFS-IGIGALAANFINYGTEQIK---------GGWGWRVSLALAAVPASIL  217 (361)
Q Consensus       148 ~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~---------~~~~wr~~~~~~~~~~~~~  217 (361)
                      |+-...|...+.+++..|++.|+..++.+... ..+|..++..++.......         +...+...|...+..+++.
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998774 4688888777766553211         0113555666655555444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.66  E-value=0.0014  Score=57.02  Aligned_cols=133  Identities=16%  Similarity=0.113  Sum_probs=86.5

Q ss_pred             hhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHH-----hh
Q 018042           35 GGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR-----AF  109 (361)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~  109 (361)
                      -..++|.-.+..+   ++|.++                  +.-|+|-++.+..+.++.  -.--.+++.++.|     |+
T Consensus        39 LYllQGiP~GL~~---~iP~lL------------------~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~   95 (510)
T KOG3574|consen   39 LYLLQGIPLGLIG---AIPLLL------------------QAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRF   95 (510)
T ss_pred             HHHHcCCchhHhh---hhHHHh------------------cCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhh
Confidence            4577788777765   223333                  333667766666543322  1234667788888     99


Q ss_pred             chhHHHHH-HHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHH
Q 018042          110 GRKPSVLM-GGAAFLAGSALGGA-----------AVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQ  177 (361)
Q Consensus       110 Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~  177 (361)
                      ||||.-++ +..+.+..+...+.           .++...+....++.-+..+.....+-.+.-.+..+++-|.+.....
T Consensus        96 GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~  175 (510)
T KOG3574|consen   96 GRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQS  175 (510)
T ss_pred             ccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHH
Confidence            99986544 33333333333332           2344445455677777778888888888888888999998888888


Q ss_pred             HHHHHHHHHHHHH
Q 018042          178 FSIGIGALAANFI  190 (361)
Q Consensus       178 ~~~~~g~~~~~~~  190 (361)
                      .+...|..++..+
T Consensus       176 Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  176 VGQTAGYFLGNVV  188 (510)
T ss_pred             HHHhhhHHhhcce
Confidence            8888888877666

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.65  E-value=0.00055  Score=59.60  Aligned_cols=123  Identities=13%  Similarity=0.083  Sum_probs=109.8

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc--hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG--RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  151 (361)
                      .+.+|.++.+.|.+.+...++..+.+....+..||..  -+-.+..++.++.-..++.+.++....+..+-.+-.+..+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            4668999999999998888999999999999999987  77777788888887888888889999999999999999999


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                      ..+....++....|.++||..+|+......++-++||.+++.+..
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            999999999999999999999999999999999999999866654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.63  E-value=0.00093  Score=59.55  Aligned_cols=135  Identities=17%  Similarity=0.189  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcC
Q 018042           85 TSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMA  164 (361)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~  164 (361)
                      +.+.-+-.+-..+..+.+.++.+|+.-+.-+.+..++..++.++.+++++.+.-+++-.+.+++.|........+.+ .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            33444444556677777888889876555556666788889999999999999999999999999998888877644 55


Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-ccC
Q 018042          165 PARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  226 (361)
Q Consensus       165 ~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  226 (361)
                      ++    ...+.+..+.+.+.++|...-..+..  -..+-|..+.+...+.++..+..++ +|.
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            53    34677788888888887776555554  1234566776666555555544444 443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.60  E-value=4.2e-05  Score=51.17  Aligned_cols=63  Identities=14%  Similarity=0.147  Sum_probs=54.6

Q ss_pred             HHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          293 IPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      ..++..+++...+..|.|.++++.|+++.+.+.+..+..+..+++.++.|.  ++||.++++...
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~--laDk~~~~~~~l   69 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGF--LADKFGKRKVIL   69 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCccHHHH
Confidence            344555666778899999999999999999999999999999999999999  699999987654

>PTZ00207 hypothetical protein; Provisional

Probab=97.58  E-value=0.00053  Score=64.63  Aligned_cols=135  Identities=9%  Similarity=-0.035  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHH---h------hchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 018042           87 FTSSLYVAGLVASFVASSVTR---A------FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  157 (361)
Q Consensus        87 ~~~~~~~~~~~~~~~~g~l~d---~------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  157 (361)
                      +.++..++..+|-+..|.++.   |      +.|--.+.+..+ +.++.++..+.-....+++.-++.|++.|..++...
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            667777777777777777662   1      112223333444 556666665553336899999999999999999999


Q ss_pred             HHHHhcCCcccccchhhHHHHHHHHHHHHH-HHHHhhhcccC----------CCcchHHHHHhhHHHHHHHHHhccc
Q 018042          158 LYLSEMAPARYRGAINNGFQFSIGIGALAA-NFINYGTEQIK----------GGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       158 ~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~----------~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      ..++|+|- |+-|+-..+......+|+.+- ..+.+.+.+..          +..=.|..|++.+.+++...+....
T Consensus       475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            99999999 888888888888888887765 33333222111          0112678888887777777665533

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.50  E-value=0.00056  Score=61.53  Aligned_cols=108  Identities=19%  Similarity=0.331  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCccc---ccchhhHHHHHH
Q 018042          113 PSVLMGGAAFLAGSALGGAAV---------NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY---RGAINNGFQFSI  180 (361)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~---R~~~~~~~~~~~  180 (361)
                      +++.++.++..+|.++..++.         +.+.++++-.+.++|.|..-+....+++|.+++++   |.....++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888899999988855432         23578889999999999999999999999998763   456677889999


Q ss_pred             HHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          181 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       181 ~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      ++|..++..+...+.   ++.+|.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~---~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQ---QNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHH---HCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhc---cccchhhhhhHHHHHHHHHHHHHHh
Confidence            999999988855555   4468999999988777766655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.42  E-value=0.024  Score=52.49  Aligned_cols=117  Identities=9%  Similarity=0.011  Sum_probs=79.2

Q ss_pred             CchhHHHHHHHHHH-HHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh---------h----------------
Q 018042           80 DSQLLTSFTSSLYV-AGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA---------V----------------  133 (361)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---------~----------------  133 (361)
                      +++.+..+-....+ ...+...+..+++++++|.+++-+....+.....+.++.         +                
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            55566666654444 445667778999999999998877666665555555542         0                


Q ss_pred             ------hHHHHHHHHHHHHhhhhhhhh-HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          134 ------NVYMLIFGRLLLGVGVGFANQ-SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       134 ------~~~~~~~~r~l~G~~~~~~~~-~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                            +.|.+.+.-++.-+-...... .-..+.+|.++.+|-.+..+++..+.++|.++++.+...+.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  123333333333333333333 457888999999999999999999999999988888766665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.37  E-value=0.00042  Score=59.43  Aligned_cols=157  Identities=13%  Similarity=0.086  Sum_probs=113.7

Q ss_pred             cCCchhHH-HHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 018042           78 KFDSQLLT-SFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        78 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      |++.++.. -+.-...-.+.+.-.+.-.+.|..--|++++.-.+.......+.-+.++.+.+=+.-+..|...+. ...-
T Consensus        37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAY  115 (433)
T KOG3810|consen   37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAY  115 (433)
T ss_pred             CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhh
Confidence            45544433 233344455667777778899999999999988888888888888999999998889999987654 5678


Q ss_pred             HHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCC
Q 018042          157 PLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKS  236 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~  236 (361)
                      ++|+-+..+++++.++.+...+..-.|...|..++..+.... ..+.+..-.+......+.....+|+|..+|.+..+++
T Consensus       116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~-~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~  194 (433)
T KOG3810|consen  116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE-TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL  194 (433)
T ss_pred             hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc-ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence            889999999999999999988888888888888777666442 2345555455555445555566788877765544433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0012  Score=54.72  Aligned_cols=90  Identities=12%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  153 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  153 (361)
                      -+.++....+++.+....+-..++...+.|-++|+-|||+.-+.-++..+++|+ .-.++.+-.++++|.+.|+..+..+
T Consensus        64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLF  142 (454)
T KOG4332|consen   64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLF  142 (454)
T ss_pred             ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHH
Confidence            455677888888777666666677888899999999999976655555555443 3357888999999999999998888


Q ss_pred             hHHHHH-HHhcC
Q 018042          154 QSVPLY-LSEMA  164 (361)
Q Consensus       154 ~~~~~~-~~e~~  164 (361)
                      ..-.++ ++|.-
T Consensus       143 SaFEsWliaEHn  154 (454)
T KOG4332|consen  143 SAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHhh
Confidence            777665 56654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.27  E-value=0.0022  Score=58.83  Aligned_cols=151  Identities=9%  Similarity=0.053  Sum_probs=110.2

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh----------hhhHHHHHHHHHHHHh
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----------AVNVYMLIFGRLLLGV  147 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~r~l~G~  147 (361)
                      |+++...+.+..+..++..+|..+......++.-|+++..+.++..+..+....          .++.+..+.--++..+
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            478899999998888999999999988888889899988888877766654322          1233333344677777


Q ss_pred             hhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCC-----cchHHHHHhhHHHHHHHHHhcc
Q 018042          148 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG-----WGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       148 ~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      ..+..+-+...+++|.+|+..-|...++.....++|..++..++..+.+..+-     .+-.+..++..+..++......
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~  410 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF  410 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            77777888889999999999999999999999999988888888777654321     1223444555555555555555


Q ss_pred             cccCCh
Q 018042          223 FLPETP  228 (361)
Q Consensus       223 ~~~es~  228 (361)
                      ++|+..
T Consensus       411 lLp~~~  416 (433)
T PF03092_consen  411 LLPPQK  416 (433)
T ss_pred             HcCCCc
Confidence            677653

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.20  E-value=0.0061  Score=57.55  Aligned_cols=145  Identities=15%  Similarity=0.123  Sum_probs=106.9

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHHHHHHHHHHHHhhhhhh------------------
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAVN------------------  134 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~~------------------  134 (361)
                      .+++|.+...+....+.+.-.....++..+.++|-| ||-+++.++.++..++..+..++..                  
T Consensus        65 t~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c  144 (571)
T KOG1237|consen   65 TLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVC  144 (571)
T ss_pred             HHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcc
Confidence            455566777777777777777788889999999986 9999999999988888655544211                  


Q ss_pred             -------HHHHHHHHHHHHhhhhhhhhHHHHHHHhcCC---ccc---ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCc
Q 018042          135 -------VYMLIFGRLLLGVGVGFANQSVPLYLSEMAP---ARY---RGAINNGFQFSIGIGALAANFINYGTEQIKGGW  201 (361)
Q Consensus       135 -------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~---~~~---R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  201 (361)
                             ...+..+..+..+|.|+.-+...++-+|-++   +++   +...+..+....++|..++..+....+   ++.
T Consensus       145 ~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq---~~~  221 (571)
T KOG1237|consen  145 ESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ---DNV  221 (571)
T ss_pred             cCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh---hcc
Confidence                   1245566778888999999999999999998   322   235667788888889888877744443   456


Q ss_pred             chHHHHHhhHHHHHHHHHhc
Q 018042          202 GWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       202 ~wr~~~~~~~~~~~~~~~~~  221 (361)
                      +|.+.|.+..+...+..++.
T Consensus       222 ~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  222 GWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             cceeeccHHHHHHHHHHHHH
Confidence            89999988766655544433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.03  E-value=0.0045  Score=56.61  Aligned_cols=135  Identities=12%  Similarity=0.058  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHH-hhh-------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 018042           90 SLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSAL-GGA-------AVNVYMLIFGRLLLGVGVGFANQSVPLYLS  161 (361)
Q Consensus        90 ~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~-~~~-------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~  161 (361)
                      ...+...+..+....+..|+..|.=+..++++..+..++ ..+       ...++..++.-++.|++.+.......++.+
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~  132 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG  132 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence            334444444455555556666533333343322221111 111       135666677788899999888888888666


Q ss_pred             hcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCC---cchH--HHHHhhHHHHHHHHHhcccccCChh
Q 018042          162 EMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG---WGWR--VSLALAAVPASILTLGALFLPETPN  229 (361)
Q Consensus       162 e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~wr--~~~~~~~~~~~~~~~~~~~~~es~~  229 (361)
                       .+|++.    +..+..+.+++.+++.++........++   ..++  ..|.+..++.++.++....++..|-
T Consensus       133 -~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~  200 (437)
T TIGR00939       133 -VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPF  200 (437)
T ss_pred             -cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence             567554    3444444555544444443322211111   1222  2233344444444444455666653

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.055  Score=49.39  Aligned_cols=106  Identities=22%  Similarity=0.325  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHh---hchhHHHHHHHHHHHHHHHHhhhh------------------hhHHHHHHHH
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRA---FGRKPSVLMGGAAFLAGSALGGAA------------------VNVYMLIFGR  142 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~---~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r  142 (361)
                      .+...-...+|..+++.+.+.+++|   +||++.+.++..+..+++++....                  +++....++-
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            3444444556666777777777765   799999999988888888877653                  2466777888


Q ss_pred             HHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHH
Q 018042          143 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI  190 (361)
Q Consensus       143 ~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~  190 (361)
                      ++.|++-+......+.++.+.+ ++.|..+.+++-.-..++..++...
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999 5778888888877777777665444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.98  E-value=0.0039  Score=56.52  Aligned_cols=118  Identities=13%  Similarity=0.028  Sum_probs=66.6

Q ss_pred             cCCchhHHHHHH---HHHHHHHHHHHhhHHHHHhhchhHHHHHH-HHHHHHHHHHhhhhh--------------------
Q 018042           78 KFDSQLLTSFTS---SLYVAGLVASFVASSVTRAFGRKPSVLMG-GAAFLAGSALGGAAV--------------------  133 (361)
Q Consensus        78 ~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~Grr~~l~~~-~~~~~~~~~~~~~~~--------------------  133 (361)
                      ++|.++.+.++-   -+.+=..-++++=...+.|+||||..++- -.+.++..+..+...                    
T Consensus        33 ~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~  112 (544)
T PF13000_consen   33 KVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGEST  112 (544)
T ss_pred             CCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCc
Confidence            556666665431   12222233444445556689999876552 233333333222111                    


Q ss_pred             ----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          134 ----NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       134 ----~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                          +...+....++.=+-.+.....+-.+.-.+..+++++.+......+.++|..++..+-..+.
T Consensus       113 ~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  113 VNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             ccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence                11123333434444456666666677777788899998888888888888887766644333

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.90  E-value=0.26  Score=44.95  Aligned_cols=117  Identities=8%  Similarity=-0.001  Sum_probs=83.0

Q ss_pred             CchhHHHHHHHHHH-HHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh----------------------h---
Q 018042           80 DSQLLTSFTSSLYV-AGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA----------------------V---  133 (361)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~----------------------~---  133 (361)
                      +++.+..+-+...+ +..+..++.+++.+++.|.+++-+.+..+....+++++.                      |   
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l  138 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL  138 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence            45566777777767 667888899999999999999887777777666666652                      1   


Q ss_pred             -------hHHHHHHHHHHHHhhhhhhhh-HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 018042          134 -------NVYMLIFGRLLLGVGVGFANQ-SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       134 -------~~~~~~~~r~l~G~~~~~~~~-~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  196 (361)
                             +.|...+.-.+.-+-.+.... .-.....|.+..+|-.+..++++.+.+++..++..+...+..
T Consensus       139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                   113333333333333333333 445678999999999999999999999999888888666654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.86  E-value=0.032  Score=50.83  Aligned_cols=138  Identities=15%  Similarity=0.070  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhchh-------HHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHH
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGRK-------PSVLMGGAAFLAGSALGGAA----------VNVYMLIFGRLLLG  146 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G  146 (361)
                      ..+..+...+..++.+++..++..+.+++       .-+-+++.+++.+.++....          .+.++++..-++++
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            35566777777777787877777775544       23345555555555544433          36788999999999


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcc---cCCCcchHHHHHhhHHHHHHHHHhc
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ---IKGGWGWRVSLALAAVPASILTLGA  221 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~wr~~~~~~~~~~~~~~~~~  221 (361)
                      +|+=...|+..++++...|++-.+..++.+......|..++..++.....   ..+...-...|+..+...++..+..
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888888887777552110   1122234455666666555554443

>PRK03612 spermidine synthase; Provisional

Probab=96.85  E-value=0.07  Score=50.16  Aligned_cols=116  Identities=12%  Similarity=-0.018  Sum_probs=65.3

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHH---HHHHHh----hhhhhH-HHHHHHHHHHHhhh
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFL---AGSALG----GAAVNV-YMLIFGRLLLGVGV  149 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~---~~~~~~----~~~~~~-~~~~~~r~l~G~~~  149 (361)
                      |-+....+.+.+++.+|..+|+.+++++.++--|+... +-..+..   ++..+.    ++.... ..++..-++.++..
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55777889999999999999999998876443333221 1111111   111111    111111 12233355667778


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      |...|....+..+... ++-+...+-......+|+++|.++..++.
T Consensus       125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL  169 (521)
T PRK03612        125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL  169 (521)
T ss_pred             HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence            8877777776655332 12344556666667777777776654443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.68  E-value=0.024  Score=50.72  Aligned_cols=114  Identities=11%  Similarity=0.011  Sum_probs=84.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFL---AGSALGGAAVNVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      ..++..+....+.+|..++.--...+  |+-|-+.+.+-..+..   +.....-+.+++|..++.-+..|+..|..+...
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt  356 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT  356 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            46777888888888887765443322  3433333322222222   222333456899999999999999999999999


Q ss_pred             HHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          157 PLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      ...+.|-.++++|..+++....+.++|..++.+++..+.
T Consensus       357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999876554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.37  E-value=0.16  Score=46.36  Aligned_cols=118  Identities=18%  Similarity=0.125  Sum_probs=88.7

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhh------hh----hHHHHHHHHHHHHh
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA------AV----NVYMLIFGRLLLGV  147 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~------~~----~~~~~~~~r~l~G~  147 (361)
                      |++...+|.+-+...+....+.+...++.+|+|..+.=+.+.........++..      .+    +...++.+-.+.=+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999888777666554433333322      12    33444444455555


Q ss_pred             hhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          148 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       148 ~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      |.=...-...-++.|..|+++||...+.-....++-.++...+...+.
T Consensus       369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            555667788888999999999999999988888888777777755444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.72  E-value=0.024  Score=52.05  Aligned_cols=58  Identities=9%  Similarity=0.059  Sum_probs=47.7

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhH-HHHHHHHHHHHHHHHhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKP-SVLMGGAAFLAGSALGGAA  132 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~-~l~~~~~~~~~~~~~~~~~  132 (361)
                      +++|+++.+.|.+...-.+..+++.|++|+++|||-+|+ .++.+.+....+.++..+.
T Consensus        39 kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   39 KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            445999999999999999999999999999999997655 4555666677777777665

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.62  E-value=0.048  Score=48.98  Aligned_cols=150  Identities=12%  Similarity=0.006  Sum_probs=87.9

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-hhHHHHHHHHHHHHHHHHhh-hh---hhHHHHHHHHHHHHhhhhhh
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-RKPSVLMGGAAFLAGSALGG-AA---VNVYMLIFGRLLLGVGVGFA  152 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-rr~~l~~~~~~~~~~~~~~~-~~---~~~~~~~~~r~l~G~~~~~~  152 (361)
                      |.+....|+......++.++++.+.|.+.||.. -|.+.++......++.+... +.   .+.+.+...-.+.|.+....
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~  376 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY  376 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence            345567899999999999999999999999985 45555665555555532222 21   23344555567778888888


Q ss_pred             hhHHHHHHHhcCCcccccchhhHHHH-HHHHHHHHHHHHHhhhcccCCCcchHHHH-HhhHHHHHHHHHhcccccCCh
Q 018042          153 NQSVPLYLSEMAPARYRGAINNGFQF-SIGIGALAANFINYGTEQIKGGWGWRVSL-ALAAVPASILTLGALFLPETP  228 (361)
Q Consensus       153 ~~~~~~~~~e~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~wr~~~-~~~~~~~~~~~~~~~~~~es~  228 (361)
                      .|....+-.|..-|..-+...|+... +...|..+-...+....... ..+|.... +......++..++..+++|..
T Consensus       377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG-PPGNTFPANIFLTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC-CCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence            88888887887544444444555443 33334333333333333222 12344433 334444444455556665543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.29  E-value=0.88  Score=40.80  Aligned_cols=36  Identities=14%  Similarity=0.088  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccc
Q 018042          133 VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYR  169 (361)
Q Consensus       133 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R  169 (361)
                      ..++..++.-.+.+.+.|..........++ +|+|+-
T Consensus       115 ~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt  150 (406)
T KOG1479|consen  115 GFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT  150 (406)
T ss_pred             hhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence            355666777888888888888888886655 566654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.13  E-value=0.029  Score=54.15  Aligned_cols=68  Identities=7%  Similarity=-0.067  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecccC
Q 018042          291 MAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  360 (361)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~~  360 (361)
                      ..+..+.+......+..-++.+.++++++..+.+++.+.+.++..++.++.++  +.||.+||+++.++.
T Consensus        38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~--~~~r~~r~~~i~~g~  105 (633)
T TIGR00805        38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSY--FGTKLHRPIVIGIGC  105 (633)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHH--hhcccCcceEEEecH
Confidence            33344544444445566667777788999999999999999999999999999  699999999988764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=93.32  E-value=0.28  Score=44.45  Aligned_cols=118  Identities=15%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchh----HHHHHHHHHHHHH-------HHHhhh-hhhHHHHHHHHHHHH
Q 018042           79 FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRK----PSVLMGGAAFLAG-------SALGGA-AVNVYMLIFGRLLLG  146 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr----~~l~~~~~~~~~~-------~~~~~~-~~~~~~~~~~r~l~G  146 (361)
                      .+..+..++..+...+..+|.+++|.++||+-|+    ....+..+....+       ..+... ..+...+....++.|
T Consensus       280 ~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g  359 (493)
T KOG1330|consen  280 FDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVG  359 (493)
T ss_pred             CccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3555566777888888899999999999995332    1222222222111       111111 122222223344444


Q ss_pred             hhhh-hhhhHHHHHHHhcCCcccccchhhHHH-HHHHHHHHHHHHHHhhhcc
Q 018042          147 VGVG-FANQSVPLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQ  196 (361)
Q Consensus       147 ~~~~-~~~~~~~~~~~e~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~  196 (361)
                      .... ..+.+..-...|..|++.|..+.++-. ....+|..-+|.+-+.+.+
T Consensus       360 ~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd  411 (493)
T KOG1330|consen  360 ETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD  411 (493)
T ss_pred             HHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence            4322 234555667889999999999999855 4455566666634444444

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.20  E-value=0.025  Score=49.40  Aligned_cols=20  Identities=25%  Similarity=0.200  Sum_probs=0.0

Q ss_pred             HHhhhhhhcccccccchhhH
Q 018042          325 QLSKWIECGGSIGFGRNMWV  344 (361)
Q Consensus       325 ~~~~~~~~~~~~g~~~~~~~  344 (361)
                      ..+..+.++..+|+.+..+.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~  205 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWP  205 (309)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHhcchhccee
Confidence            45667899999999998873

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.11  E-value=1.5  Score=40.38  Aligned_cols=111  Identities=9%  Similarity=-0.039  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhchh--HHHHH--HHHHHHHHHHHhhh---------hhhHHHHHHHHHHHHhhhh
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGRK--PSVLM--GGAAFLAGSALGGA---------AVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~l~~--~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~~~~  150 (361)
                      .-.....++++-.+|..+..+.. .-++|  +.++.  .=+++.-..++|..         -++-+..++.-++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            34556666777777776554321 11223  33222  22223333333322         2466777788999999999


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  195 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (361)
                      -..+.+..+..+..++++|..+..+...+..+|..+|..++..+.
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~  432 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV  432 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888866554

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=92.16  E-value=0.063  Score=44.65  Aligned_cols=57  Identities=12%  Similarity=0.152  Sum_probs=36.1

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHhhhc-c--cCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          167 RYRGAINNGFQFSIGIGALAANFINYGTE-Q--IKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       167 ~~R~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      |+|+........++++|.++..+.-. .. +  ......|++.+.+.+++..+.+++...+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~-~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFL-ISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56777777778888888876544311 22 1  1112369999988887777666655433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.09  E-value=2.9  Score=37.61  Aligned_cols=113  Identities=15%  Similarity=0.094  Sum_probs=76.9

Q ss_pred             CchhHHHHHHH-HHHHHHHHHHhhHHHHHhhchhHHHHHHHHH-HHHHHHHh-------hhhhhHHHHHHHHHHHHhhhh
Q 018042           80 DSQLLTSFTSS-LYVAGLVASFVASSVTRAFGRKPSVLMGGAA-FLAGSALG-------GAAVNVYMLIFGRLLLGVGVG  150 (361)
Q Consensus        80 ~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~-~~~~~~~~-------~~~~~~~~~~~~r~l~G~~~~  150 (361)
                      +......+... +++.-.+|.+.+.++-++ +||+..+...+= ..+-.+..       ..-.+-+++++...+.|+..|
T Consensus       280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG  358 (406)
T KOG1479|consen  280 GDWYALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG  358 (406)
T ss_pred             chhhHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence            34445555666 888888887776666544 344433332221 11112211       123566778888999999999


Q ss_pred             hhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhh
Q 018042          151 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYG  193 (361)
Q Consensus       151 ~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  193 (361)
                      -.......+..+..+++++-.+..+.......|...|..++..
T Consensus       359 Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  359 YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             hHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8888888999999999999888888888888888888777443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=90.33  E-value=1.3  Score=38.16  Aligned_cols=113  Identities=10%  Similarity=-0.001  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHh-hchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 018042           82 QLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYL  160 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  160 (361)
                      +|.-|....|.+|..++.-.....--+ .=--..+..-.+++.+...+..+.++++...+.-+..|+-.|..+....--+
T Consensus       288 sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i  367 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNI  367 (409)
T ss_pred             hcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence            346788877777765433222111111 0011223334445555566677789999999999999999899998888888


Q ss_pred             HhcCCcccccchhhHHHHHHHHHHHHHHHHHhhh
Q 018042          161 SEMAPARYRGAINNGFQFSIGIGALAANFINYGT  194 (361)
Q Consensus       161 ~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  194 (361)
                      .+-.++++|-.+++....+-.+|..++..++..+
T Consensus       368 ~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  368 HKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             hhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            8888999999999999999999998888886443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=89.60  E-value=0.39  Score=42.16  Aligned_cols=43  Identities=14%  Similarity=-0.040  Sum_probs=34.1

Q ss_pred             HHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceee
Q 018042          312 LFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  356 (361)
Q Consensus       312 ~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~  356 (361)
                      ..+++|++..+.+.++....+.+.+...+.|.  +.||+|||+.-
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~--laD~~Grk~~c  102 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGS--LADRYGRKKAC  102 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCchHHH
Confidence            34678999999988888877777776667776  59999999763

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=89.35  E-value=0.22  Score=45.02  Aligned_cols=85  Identities=16%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 018042           76 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  155 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  155 (361)
                      .|+-....-.|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+..++.+....-+-..|+-.+....+
T Consensus       326 ~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~  405 (498)
T KOG0637|consen  326 LYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTV  405 (498)
T ss_pred             HHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcc
Confidence            34444455556667777888889999999999999888888887778888888888888888888888888554444443


Q ss_pred             HHHHH
Q 018042          156 VPLYL  160 (361)
Q Consensus       156 ~~~~~  160 (361)
                      -...+
T Consensus       406 p~~l~  410 (498)
T KOG0637|consen  406 PYGAL  410 (498)
T ss_pred             cHHHH
Confidence            33333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=89.33  E-value=0.61  Score=43.02  Aligned_cols=79  Identities=13%  Similarity=0.214  Sum_probs=58.4

Q ss_pred             HHHHHH-HHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHH
Q 018042          136 YMLIFG-RLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPA  214 (361)
Q Consensus       136 ~~~~~~-r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~  214 (361)
                      +.++++ -++.|++.-.......++-+|...+++++.+.++++.....+..++|++.......   .|.|+...+.+...
T Consensus       388 ~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~---~g~~~v~~~~~~~~  464 (488)
T KOG2325|consen  388 ILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL---SGPRPVWIILLCLL  464 (488)
T ss_pred             hhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh---cCccHHHHHHHHHH
Confidence            344554 45677777777778888999999999999999999999999999999985554433   46776665544444


Q ss_pred             HHH
Q 018042          215 SIL  217 (361)
Q Consensus       215 ~~~  217 (361)
                      ++.
T Consensus       465 l~~  467 (488)
T KOG2325|consen  465 LVV  467 (488)
T ss_pred             HHH
Confidence            433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=88.07  E-value=10  Score=34.39  Aligned_cols=98  Identities=11%  Similarity=0.024  Sum_probs=71.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHH--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 018042           81 SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVL--MGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPL  158 (361)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  158 (361)
                      ...-|.+-++..+...++.+..|++..++.+-.-+.  ...++.+...++++..+|+|..+++-++.+.......+.+..
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~  363 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF  363 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334477778888888899999999977777754443  344555566667788899999999988888887777777777


Q ss_pred             HHHhcCCcccccchhhHHHH
Q 018042          159 YLSEMAPARYRGAINNGFQF  178 (361)
Q Consensus       159 ~~~e~~~~~~R~~~~~~~~~  178 (361)
                      -++.....+.-+...|+...
T Consensus       364 qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  364 QIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHhccccceeeeeeeHHH
Confidence            77777766666666666543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=87.85  E-value=0.14  Score=34.73  Aligned_cols=53  Identities=19%  Similarity=-0.015  Sum_probs=42.5

Q ss_pred             hhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeecc
Q 018042          304 VIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  358 (361)
Q Consensus       304 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~  358 (361)
                      .....+|.+.++.++|..+++++.+...+|-.+|.+....  +.++..+++.+..
T Consensus        10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~--~~~~~~~~~~~~~   62 (85)
T PF06779_consen   10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASR--LPRHSRPRRLLRA   62 (85)
T ss_pred             HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccHHHHHHH
Confidence            3456788888999999999999999999999999999988  4666555554433

Note that many members are hypothetical proteins.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.22  E-value=12  Score=31.93  Aligned_cols=132  Identities=15%  Similarity=0.080  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhchh--HHHHHHHHHHHHHHHHhhh----hh---hHHHHHHHHHHHHhhhhhhhh
Q 018042           84 LTSFTSSLYVAGLVASFVASSVTRAFGRK--PSVLMGGAAFLAGSALGGA----AV---NVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~l~~~~~~~~~~~~~~~~----~~---~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      -|.+.+.++++.++|+-+...+..|-..|  +...+..++.++...+...    +|   ++..-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            47788888888888888887777765443  3444444443333332222    22   222334555666677888999


Q ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCC-CcchHHHHHhhHHHHHHHHH
Q 018042          155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG-GWGWRVSLALAAVPASILTL  219 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~wr~~~~~~~~~~~~~~~  219 (361)
                      ....+-++..|.+.|...+.++-....+-..++-.    ..+..+ ..+=|..|-++.+...+..+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLy----nlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY----NLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe----ecccccCccccchhhhhhHHHHHHHHH
Confidence            99999999999999998888876654433222111    111111 23556777777766655544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=86.52  E-value=0.72  Score=38.72  Aligned_cols=58  Identities=16%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             hcchhhhHHcHHHHHHhcCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          299 VTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      ....+.+..|.|.+-++.|+|.++...+.....+|..+| +..|.  +.|++|.+.++.+|
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~--l~d~~gp~~~l~iG   72 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGL--LYDRFGPWVVLLIG   72 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHH--HHHhcchHHHHHHH
Confidence            345678889999988889999999999999999998876 66677  59999998876654

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=86.49  E-value=3.1  Score=36.27  Aligned_cols=72  Identities=21%  Similarity=0.224  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcC
Q 018042           92 YVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMA  164 (361)
Q Consensus        92 ~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~  164 (361)
                      .+..+.++++.+.+..++|.|+++.++.......-.. -+-+.+..++-.-.+.|++.+..+..--.|+++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            3455667777779999999999988877766553322 23467788888899999999988877777766654

>TIGR00806 rfc RFC reduced folate carrier

Probab=86.02  E-value=6.8  Score=36.41  Aligned_cols=94  Identities=12%  Similarity=0.065  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhchh--HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 018042           85 TSFTSSLYVAGLVASFVASSVTRAFGRK--PSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSE  162 (361)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e  162 (361)
                      |..-++..+..++..+..|++-.++.+-  ..+.+..++.+...++++.++|+|..+++-++.+.......+....-++.
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566667777888899999997777553  34444455555556677888999999999999999998888888888888


Q ss_pred             cCCcccccchhhHHHH
Q 018042          163 MAPARYRGAINNGFQF  178 (361)
Q Consensus       163 ~~~~~~R~~~~~~~~~  178 (361)
                      ....+.-+...|+..+
T Consensus       381 ~L~~~~~aLvFGiNtf  396 (511)
T TIGR00806       381 SLSKELCALVFGINTF  396 (511)
T ss_pred             HhcccceEEEEecHHH
Confidence            8877766887777554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.55  E-value=7.6  Score=27.39  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHH
Q 018042           86 SFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMG  118 (361)
Q Consensus        86 ~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~  118 (361)
                      .-.+.=+++..+.....||+.||| |.++..++.
T Consensus        46 ~klssefIsGilVGa~iG~llD~~agTsPwglIv   79 (116)
T COG5336          46 FKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIV   79 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence            334555667777777889999997 666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-13

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 133/335 (39%), Gaps = 59/335 (17%)
Query: 14  NNIYNGKITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKI 73
           N  YN   ++++    ++A +GG++FGYD  +  G  ++E     F    +        +
Sbjct: 2   NTQYN---SSYIFSITLVATLGGLLFGYDTAVISG--TVESLNTVFVAPQNLSESAANSL 56
Query: 74  SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMXXXXXXXXXXXXX--- 130
             +C           +S  +  ++   +    +  FGR+ S+ +                
Sbjct: 57  LGFC----------VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPE 106
Query: 131 ---------XXVNVYM------LIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGAINNG 175
                      V VY+       +  R         A+   P+Y++E+APA  RG + + 
Sbjct: 107 LGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166
Query: 176 FQFSIGIGALAANFINYGTEQI-KGGW----GWRVSLALAAVPASILTLGALFLPETPNS 230
            QF+I  G L    +NY   +     W    GWR   A   +PA +  +    +PE+P  
Sbjct: 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRW 226
Query: 231 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLM- 289
           L+ R    Q A+ +L+++ G             A+   + I H       RK   +LLM 
Sbjct: 227 LMSRGKQEQ-AEGILRKIMGNT----------LATQAVQEIKHSLDH--GRKTGGRLLMF 273
Query: 290 -------AMAIPFFQQVTGINVIAFYAPLLFRTIG 317
                   + +  FQQ  GINV+ +YAP +F+T+G
Sbjct: 274 GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG 308
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	5e-04
2cfq_A	417	Lactose permease; transport, transport mechanism,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 52/354 (14%), Positives = 96/354 (27%), Gaps = 128/354 (36%)

Query: 57  EKFFPEVHRKMKED-----TKISNYCKFDSQLLTSFTSS---LYVAGLVASFVASSVTRA 108
           +KF  EV R    +     + I    +  S +   +      LY       F   +V+R 
Sbjct: 80  QKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRL 134

Query: 109 FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY 168
             +    L          AL        +LI G  +LG G     ++    ++      Y
Sbjct: 135 --QPYLKLR--------QALLELRPAKNVLIDG--VLGSG-----KTW---VALDVCLSY 174

Query: 169 RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT-LGALF---- 223
           +  +     F I        F             W ++L     P ++L  L  L     
Sbjct: 175 K--VQCKMDFKI--------F-------------W-LNLKNCNSPETVLEMLQKLLYQID 210

Query: 224 ------------LPETPNSLIQRKS------DHQKAKLMLQRVRGTNDVEAEFD------ 259
                       +    +S+            ++   L+L  V+      A F+      
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKIL 269

Query: 260 ---------DLLKASSTAK-TINHPFKKIIQRKYRPQLLMAMAIPFFQ---QVTGINVIA 306
                    D L A++T   +++H    +   + +  LL  +         +V   N   
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--- 326

Query: 307 FYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL 360
              P     I    ++                G   W        W+ ++   L
Sbjct: 327 ---PRRLSIIAE-SIRD---------------GLATW------DNWKHVNCDKL 355

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 88  TSSLYVAGL-VASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLG 146
               Y+    V+      ++   GR+P +L+G + F+  + +     ++ +LI    + G
Sbjct: 40  VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99

Query: 147 VGVGFAN---QSVP--LYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGW 201
           +G G      +++P  LY            +N G      +  L A  I        GG 
Sbjct: 100 MGTGVGGVMARTLPRDLYERTQL-RHANSLLNMGI----LVSPLLAPLI--------GGL 146

Query: 202 -----GWRVS-LALAAVPASILTLGALFLPET 227
                 WR   L L  + A +    A ++PET
Sbjct: 147 LDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 93  VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA 152
           +      F A  +    G K ++L+ G            A +   ++  + L    V F 
Sbjct: 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL 329

Query: 153 NQSVPLYLSEMAPARYRG-AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAA 211
                 Y++     R+        F F   +  +  + +      +    G++ +  +  
Sbjct: 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL---AGNMYESIGFQGAYLVLG 386

Query: 212 VPASILTLGALFLPETPNSLIQRKSDHQKA 241
           + A   TL ++F    P  L   +    + 
Sbjct: 387 LVALGFTLISVFTLSGPGPLSLLRRQVNEV 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.93
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.9
2xut_A	524	Proton/peptide symporter family protein; transport	99.81
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.76
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.38
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.31
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.3
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.21
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.21
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.75
2xut_A	524	Proton/peptide symporter family protein; transport	98.64

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=2e-36  Score=280.41  Aligned_cols=321  Identities=22%  Similarity=0.356  Sum_probs=252.8

Q ss_pred             cchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHH
Q 018042           20 KITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVAS   99 (361)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (361)
                      ..+++.+.++++++++.+++|||.++++.+  ++...+.+..+.          ..+.+.+..+.+++.+++.+|..+|+
T Consensus         5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~   72 (491)
T 4gc0_A            5 YNSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGG   72 (491)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cChHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            345678888888999999999999998775  344444332211          11113356778999999999999999


Q ss_pred             HhhHHHHHhhchhHHHHHHHHHHHHHHHHhh------------------hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 018042          100 FVASSVTRAFGRKPSVLMGGAAFLAGSALGG------------------AAVNVYMLIFGRLLLGVGVGFANQSVPLYLS  161 (361)
Q Consensus       100 ~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~  161 (361)
                      +++|+++||+|||++++++.+++.+++++++                  +++|+++++++|++.|++.|...+..+.+++
T Consensus        73 ~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~  152 (491)
T 4gc0_A           73 ALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA  152 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988                  4789999999999999999999999999999


Q ss_pred             hcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccC-----CCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCC
Q 018042          162 EMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK-----GGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKS  236 (361)
Q Consensus       162 e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~  236 (361)
                      |+.|+++|++..++.+.+..+|.++++.++.......     ...+||+.+.+..++.++..+..++.||||+|+..+++
T Consensus       153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~  232 (491)
T 4gc0_A          153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK  232 (491)
T ss_dssp             TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred             hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence            9999999999999999999999999988877665432     23579999999988888888888899999999999988


Q ss_pred             CHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhc
Q 018042          237 DHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI  316 (361)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (361)
                       .|++++..++...+++.+++..+.++..+++++.. .....   ..+++..+......+.++.+.+.+.+|.|.+.+..
T Consensus       233 -~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (491)
T 4gc0_A          233 -QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL  307 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             -hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc
Confidence             77777777766655443333333322222222111 11111   22345566667777888888899999999999888


Q ss_pred             CCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          317 GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       317 g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      +.+............+..+++.+++++  +.||+|||+.++.+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~dr~Grr~~~~~~  348 (491)
T 4gc0_A          308 GASTDIALLQTIIVGVINLTFTVLAIM--TVDKFGRKPLQIIG  348 (491)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCSHHHHHHH
T ss_pred             CCCccchhhHHHHHHHHHHHHHHHHHH--HHHhhcCcchhccc
Confidence            888888888888888888999999998  69999999876543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=9.8e-31  Score=238.61  Aligned_cols=275  Identities=11%  Similarity=0.091  Sum_probs=211.3

Q ss_pred             HHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 018042           28 SCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR  107 (361)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  107 (361)
                      ...++++..+..+++....++.                    .|.+++++|++..+.+++.+.+.++..++.++.|+++|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d   86 (438)
T 3o7q_A           27 PFALLCSLFFLWAVANNLNDIL--------------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK   86 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH--------------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3344445556677766655444                    45567788999999999999999999999999999999


Q ss_pred             hhchhHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHH
Q 018042          108 AFGRKPSVLMGGAAFLAGSALG---GAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGA  184 (361)
Q Consensus       108 ~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~  184 (361)
                      |+|||++++.+.++.+++.++.   +++++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.
T Consensus        87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  166 (438)
T 3o7q_A           87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA  166 (438)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999   8889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhc-ccCCC----------------------cchHHHHHhhHHHHHHHHHhccc--ccCChhHHHhhCCCHH
Q 018042          185 LAANFINYGTE-QIKGG----------------------WGWRVSLALAAVPASILTLGALF--LPETPNSLIQRKSDHQ  239 (361)
Q Consensus       185 ~~~~~~~~~~~-~~~~~----------------------~~wr~~~~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~  239 (361)
                      ++++.++..+. ...+.                      .+||+.|++.+++.++..+..++  .||+++..   ++ + 
T Consensus       167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~-~-  241 (438)
T 3o7q_A          167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS-D-  241 (438)
T ss_dssp             HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-C-
T ss_pred             HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-c-
Confidence            99999988776 43321                      01999998777666655544433  46654210   00 0 


Q ss_pred             HHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHH-HHhc-C
Q 018042          240 KAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLL-FRTI-G  317 (361)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g  317 (361)
                                                +++++.+.++++.++++..+..    .+..+...........+.|.+ +++. |
T Consensus       242 --------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g  291 (438)
T 3o7q_A          242 --------------------------AKQGSFSASLSRLARIRHWRWA----VLAQFCYVGAQTACWSYLIRYAVEEIPG  291 (438)
T ss_dssp             --------------------------SSTTSHHHHHHHHTTCSHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             --------------------------ccccchhhhHHHHHhChHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence                                      0011112244555555433322    233333334456677888988 8776 9


Q ss_pred             CCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          318 LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       318 ~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .+..+++.......++.+++.++.++  ++||+|||+++..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~~~~~  331 (438)
T 3o7q_A          292 MTAGFAANYLTGTMVCFFIGRFTGTW--LISRFAPHKVLAAY  331 (438)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence            99999999999999999999999999  69999999876543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=6.4e-31  Score=240.69  Aligned_cols=292  Identities=14%  Similarity=0.057  Sum_probs=221.1

Q ss_pred             hHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHh
Q 018042           22 TAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFV  101 (361)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (361)
                      ++.++......+++.+..+++....++.                    .|.+.+++ .+..+.+++.+++.++..+++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~   81 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALA--------------------MPYLVEQG-FSRGDLGFALSGISIAYGFSKFI   81 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHH--------------------HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHh
Confidence            4455666677777777777777665554                    55667888 89999999999999999999999


Q ss_pred             hHHHHHhhchhHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHH
Q 018042          102 ASSVTRAFGRKPSVLMGGAAFLAGSALGGA----AVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQ  177 (361)
Q Consensus       102 ~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~  177 (361)
                      .|+++||+|||++++++.++.+++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+
T Consensus        82 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  161 (451)
T 1pw4_A           82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN  161 (451)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence            999999999999999999999999999999    9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCcc-hHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchH
Q 018042          178 FSIGIGALAANFINYGTEQIKGGWG-WRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVE  255 (361)
Q Consensus       178 ~~~~~g~~~~~~~~~~~~~~~~~~~-wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (361)
                      .+..+|.++++.++..+...   .+ ||+.|++.+++.++..+.. +++||+|+....++. +++          +++.+
T Consensus       162 ~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~  227 (451)
T 1pw4_A          162 CAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEY----------KNDYP  227 (451)
T ss_dssp             HHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTT----------CCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hhh----------ccccc
Confidence            99999999999998765533   36 9999999888777665554 558888764321111 000          00000


Q ss_pred             HHHHHHHHHHhhhhhcccc--hhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhh
Q 018042          256 AEFDDLLKASSTAKTINHP--FKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIEC  332 (361)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~  332 (361)
                      ++.   +++ ++++...++  .++.+++    +.++...+..+........+..+.|.++++ .|++..+.+.......+
T Consensus       228 ~~~---~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  299 (451)
T 1pw4_A          228 DDY---NEK-AEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY  299 (451)
T ss_dssp             ---------------CCTHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred             ccc---hhh-hhcccccccchHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            000   000 000111111  2333333    444444444555555667788899999977 69999999999999999


Q ss_pred             cccccccchhhHHHHhhh--ccceeecc
Q 018042          333 GGSIGFGRNMWVKWMNRV--RWRKLDIY  358 (361)
Q Consensus       333 ~~~~g~~~~~~~~l~dr~--grr~~~~~  358 (361)
                      +.+++.++.++  +.||+  +||+.+..
T Consensus       300 ~~~~~~~~~g~--l~~~~~~~~~~~~~~  325 (451)
T 1pw4_A          300 AGIPGTLLCGW--MSDKVFRGNRGATGV  325 (451)
T ss_dssp             HHHHHHHHHHH--HHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHH--HHHHHhcCCchhHHH
Confidence            99999999999  69999  98877543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.93  E-value=8.8e-27  Score=208.17  Aligned_cols=241  Identities=15%  Similarity=0.189  Sum_probs=195.9

Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042           70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV  149 (361)
Q Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  149 (361)
                      .|.+.+++|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.
T Consensus        23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  102 (375)
T 2gfp_A           23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT  102 (375)
T ss_dssp             HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            45557888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      +...+....++.|++|+++|++++++.+.+..+|..+++.++..+.+   +.+||+.|++.++..++..+.. +++||++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (375)
T 2gfp_A          103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---MWNWRACYLFLLVLCAGVTFSMARWMPETR  179 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred             HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence            99999999999999999999999999999999999999999877664   3489999998888877766644 5588876


Q ss_pred             hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042          229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (361)
                      +..   ++                               +++.++++++.+++    +.++...+..+...........+
T Consensus       180 ~~~---~~-------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  221 (375)
T 2gfp_A          180 PVD---AP-------------------------------RTRLLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEAC  221 (375)
T ss_dssp             TTT---CC-------------------------------CCCTTTCSTHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC---cc-------------------------------cccHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHHHH
Confidence            421   00                               01112334445444    22333333344444455667778


Q ss_pred             HHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccc
Q 018042          309 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  353 (361)
Q Consensus       309 ~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr  353 (361)
                      .|.++++ .|.+..+.+.......++.+++.++.++  +.||.+++
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--l~~r~~~~  265 (375)
T 2gfp_A          222 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR--PNKRFSTL  265 (375)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT--TTTHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            8888765 6889899999999999999999999998  59998873

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.90  E-value=5.4e-23  Score=190.22  Aligned_cols=275  Identities=15%  Similarity=0.113  Sum_probs=181.4

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh-hchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  152 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  152 (361)
                      ++|+|++..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.+++++++|++.++++|++.|++.+..
T Consensus        46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  125 (491)
T 4aps_A           46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL  125 (491)
T ss_dssp             HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence            56689999999999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcCCccc--ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc-cCChh
Q 018042          153 NQSVPLYLSEMAPARY--RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-PETPN  229 (361)
Q Consensus       153 ~~~~~~~~~e~~~~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-~es~~  229 (361)
                      .+...++++|++|+++  |+.+.++++.+..+|..++|.+++.+.+.   .+||+.|++.++..++..+..++. |+..+
T Consensus       126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            9999999999999998  77788889999999999999998877653   479999999877666555444332 22110


Q ss_pred             H---HHhhCCCHHHHHHHHHH----------------hhCCcchHHHHHH---HH--HH----Hhhhhhcccchhhhccc
Q 018042          230 S---LIQRKSDHQKAKLMLQR----------------VRGTNDVEAEFDD---LL--KA----SSTAKTINHPFKKIIQR  281 (361)
Q Consensus       230 ~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---~~--~~----~~~~~~~~~~~~~~~~~  281 (361)
                      .   ..+++.++++.++..+.                ..+..+.++....   ..  ..    ....++.+....+  ++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  280 (491)
T 4aps_A          203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE--HL  280 (491)
T ss_dssp             SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH--HH
Confidence            0   00111112333222221                1111111100000   00  00    0000000000000  11


Q ss_pred             CchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042          282 KYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  357 (361)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~  357 (361)
                      +.  .......+..+...........+.|.+.++ .+.+....+.......++.+++..+.++  +.||++||+...
T Consensus       281 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~r~~~r~~~~  353 (491)
T 4aps_A          281 RV--VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAW--LWTAWKKNQPSS  353 (491)
T ss_dssp             -C--TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHH--HHHHTTTC---C
T ss_pred             HH--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHH--HHHHHhccCCCc
Confidence            11  111112222222222334455667777765 4777677788888888888888888898  699999986543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.81  E-value=5.1e-19  Score=164.89  Aligned_cols=141  Identities=15%  Similarity=0.197  Sum_probs=126.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHhhhhhhhhHH
Q 018042           79 FDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGRLLLGVGVGFANQSV  156 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~  156 (361)
                      ++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.++++ +++.++++|++.|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            8999999999999999999999999999999 999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHHhcCCcccccchhhH---HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042          157 PLYLSEMAPARYRGAINNG---FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  222 (361)
Q Consensus       157 ~~~~~e~~~~~~R~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  222 (361)
                      .+++.|++|+++|+++.+.   ...+..+|.++++.+++.+...   .+||+.|++.++..++..+..+
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999877666   8889999999999987766543   4799999988877666555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.76  E-value=5.9e-20  Score=166.26  Aligned_cols=250  Identities=10%  Similarity=-0.012  Sum_probs=147.0

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHH---HHhhhhhhHH-HHHHHHHHHHhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGS---ALGGAAVNVY-MLIFGRLLLGVGV  149 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~r~l~G~~~  149 (361)
                      ++++|++..+.+++.+.+.++..++++++|+++||+|||++++++..+..++.   ....+++... .++..+++.|++.
T Consensus        35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (417)
T 2cfq_A           35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL  114 (417)
T ss_dssp             HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999998887765532   2122332221 2334555655554


Q ss_pred             hhhhhHHHHHHHhcCCc--ccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccccc-C
Q 018042          150 GFANQSVPLYLSEMAPA--RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP-E  226 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~-e  226 (361)
                      +...+.....+.++.++  ++|+...+....+..+|..++|.++..+..    .+||+.|++.++..++..+..++.+ |
T Consensus       115 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~  190 (417)
T 2cfq_A          115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTD  190 (417)
T ss_dssp             THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred             HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCcc
Confidence            44443333334444332  355666777766777888888888776653    2699999887776555555555544 4


Q ss_pred             ChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhH
Q 018042          227 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA  306 (361)
Q Consensus       227 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (361)
                      +++.    .+ +++.+       ++              ++++...+++++.++++..+.    ..+..+.....+....
T Consensus       191 ~~~~----~~-~~~~~-------~~--------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  240 (417)
T 2cfq_A          191 APSS----AT-VANAV-------GA--------------NHSAFSLKLALELFRQPKLWF----LSLYVIGVSCTYDVFD  240 (417)
T ss_dssp             CSCS----SC-SSSSS-------SS--------------CCCCCCHHHHHHHTTCHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             cccc----cc-ccccc-------cc--------------ccccccHHHHHHHhcCCchhh----HHHHHHHHHHHHHHHH
Confidence            4210    00 00000       00              000000112334444322221    2222222222233444


Q ss_pred             HcHHHHHHhc-C---CCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          307 FYAPLLFRTI-G---LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       307 ~~~~~~~~~~-g---~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      .+.|.++.+. +   .+....+.......++.+++.++.++  ++||+|||+++..+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~l~~~  295 (417)
T 2cfq_A          241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL--IINRIGGKNALLLA  295 (417)
T ss_dssp             HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcHHHHHHHH
Confidence            5577776543 2   22334456666667778888899999  69999999876543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.38  E-value=8.6e-12  Score=113.56  Aligned_cols=148  Identities=12%  Similarity=0.055  Sum_probs=125.8

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh--chhHHHHHHHHHHH-HHHHHhhhh--hhHHHHHHHHHHHHhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSVLMGGAAFL-AGSALGGAA--VNVYMLIFGRLLLGVG  148 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G~~  148 (361)
                      ++.+|.+..+.+++.+...++..++.++.|++.||+  |||+.+..+.++.. ++.++..+.  .+.+.+.+..++.|++
T Consensus       280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  359 (451)
T 1pw4_A          280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL  359 (451)
T ss_dssp             TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            344788999999999999999999999999999999  99999988877766 677776665  3677788888999999


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHH-HHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      .+...+....++.|.+|+++|+++.++.+....+ |..+++.+.+.+.+.   .+|+..|++.++..++..+..++.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999999999999999999 999999997776654   479999988887777666655444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.31  E-value=6e-12  Score=113.64  Aligned_cols=146  Identities=14%  Similarity=0.126  Sum_probs=119.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018042           80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLY  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~  159 (361)
                      +....+...+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777888888888999999999999999999999988888888888888888888888888888877777778899


Q ss_pred             HHhcCCcccccchhhH-HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042          160 LSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  228 (361)
Q Consensus       160 ~~e~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  228 (361)
                      ++|.+|++.|+.+.+. ++....+|..++|.+++.+.+   +.+++..|.+.+++.++..+.. .+.||.+
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---SIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999998888 477888999999999776654   2368888888777777666554 4466654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.30  E-value=1.5e-11  Score=113.38  Aligned_cols=152  Identities=17%  Similarity=0.087  Sum_probs=103.5

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHhhhhh
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~  151 (361)
                      .+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...++..-+..+.....
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (491)
T 4gc0_A          307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS  386 (491)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence            34556666667777788889999999999999999999999888888777665442     1222222222222222223


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhccc---CCCcchHHHHHhhHHHHHHHHHhc-ccccCC
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI---KGGWGWRVSLALAAVPASILTLGA-LFLPET  227 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es  227 (361)
                      ..+....+.+|.+|.+.|++++++......+|..+++.+...+...   ....++.+.|++.++++++..+.. +++|||
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            3456778999999999999999999988888888777664333221   111245566777777777666655 569998


Q ss_pred             h
Q 018042          228 P  228 (361)
Q Consensus       228 ~  228 (361)
                      .
T Consensus       467 k  467 (491)
T 4gc0_A          467 K  467 (491)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.21  E-value=1.1e-10  Score=105.69  Aligned_cols=145  Identities=10%  Similarity=-0.044  Sum_probs=116.0

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042           75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  154 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  154 (361)
                      +.+|.+..+.+...+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.++.. ++.|++.+...+
T Consensus       288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  366 (438)
T 3o7q_A          288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYP  366 (438)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHH
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999999999999999888888887665544 888999999999


Q ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042          155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  224 (361)
Q Consensus       155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  224 (361)
                      ....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+  +++..|++.++..++..+..++.
T Consensus       367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
T 3o7q_A          367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIFIFARFR  432 (438)
T ss_dssp             HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999966 888877766 455888999998777665432  27777777655544444433333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.21  E-value=7.6e-11  Score=108.61  Aligned_cols=145  Identities=10%  Similarity=-0.027  Sum_probs=110.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHH-----HHHHHHHHHHHHhhhhh---------hHHHHHHHHH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVL-----MGGAAFLAGSALGGAAV---------NVYMLIFGRL  143 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~r~  143 (361)
                      +.+....+...+...++..++.++.+++.||+|||+...     .+.++.+++.++.....         +.+.+++.-+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (491)
T 4aps_A          315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA  394 (491)
T ss_dssp             CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred             ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence            334355677777888888999999999999999986654     67777777776666543         6677888889


Q ss_pred             HHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          144 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       144 l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      +.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+...+.+.    ++.+.|.+.++..++..+..++
T Consensus       395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998999999999999999999999999999999999999997666542    5666777766666665555443


Q ss_pred             -ccC
Q 018042          224 -LPE  226 (361)
Q Consensus       224 -~~e  226 (361)
                       .++
T Consensus       471 ~~~~  474 (491)
T 4aps_A          471 LSKR  474 (491)
T ss_dssp             C---
T ss_pred             HHHH
Confidence             444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.75  E-value=2.3e-09  Score=95.03  Aligned_cols=128  Identities=16%  Similarity=0.068  Sum_probs=97.4

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHH-HHHHHH--Hhhh--hhhHHHHHHHHHHHHhhhhh
Q 018042           77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAA-FLAGSA--LGGA--AVNVYMLIFGRLLLGVGVGF  151 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~r~l~G~~~~~  151 (361)
                      +|.+..+.+.+.+...++..++.++.+++.||+|++.  ..+... ...+..  ....  .++.+.+++..++.|++.+.
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  307 (375)
T 2gfp_A          230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM  307 (375)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence            5778889999999999999999999999999998832  233322 222222  1122  24677777888999999999


Q ss_pred             hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhh
Q 018042          152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALA  210 (361)
Q Consensus       152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~  210 (361)
                      ..+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+   +.+|+..+.+.
T Consensus       308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~~~  362 (375)
T 2gfp_A          308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ---TGQGSLGLLMT  362 (375)
T ss_dssp             TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH---HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccHHHHHH
Confidence            99999999999998 899999999999999999888887655542   23566666553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.64  E-value=4.9e-08  Score=90.55  Aligned_cols=139  Identities=14%  Similarity=0.051  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHH----Hhhch----hHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHH
Q 018042           84 LTSFTSSLYVAGLVASFVASSVT----RAFGR----KPSVLMGGAAFLAGSALGGAA---------VNVYMLIFGRLLLG  146 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~----d~~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G  146 (361)
                      .+.+.+...++..++.++.+.+.    ||.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            45556666667777777777664    55543    356677888888887777664         36777888899999


Q ss_pred             hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcch---------HHHHHhhHHHHHHH
Q 018042          147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGW---------RVSLALAAVPASIL  217 (361)
Q Consensus       147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w---------r~~~~~~~~~~~~~  217 (361)
                      ++.+...+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+... .+|         +..|++.+.+.++.
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999776654210 123         33366666655555


Q ss_pred             HHhccc
Q 018042          218 TLGALF  223 (361)
Q Consensus       218 ~~~~~~  223 (361)
                      .+..++
T Consensus       496 ~~~~~~  501 (524)
T 2xut_A          496 AIVFAL  501 (524)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.73
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.44
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.13

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2e-30  Score=234.61  Aligned_cols=294  Identities=15%  Similarity=0.041  Sum_probs=213.4

Q ss_pred             cchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHH
Q 018042           20 KITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVAS   99 (361)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (361)
                      ..++++|.+...+.++.+...++...++.+                    .|.++ |+|+|.++.|++.+++.+++.+++
T Consensus        18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~--------------------~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~   76 (447)
T d1pw4a_          18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALA--------------------MPYLV-EQGFSRGDLGFALSGISIAYGFSK   76 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSHHHH--------------------HHHTT-SSTTCSSCHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHH-HhCcCHHHHHHHHHHHHHHHHHHH
Confidence            344556777777777777777776665544                    34444 469999999999999999999999


Q ss_pred             HhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhH
Q 018042          100 FVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV----NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNG  175 (361)
Q Consensus       100 ~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~  175 (361)
                      ++.|+++||+|||+++.++.++.+++.+++++++    +++.++++|++.|++.+...+....+++|++|+++|++++++
T Consensus        77 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  156 (447)
T d1pw4a_          77 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV  156 (447)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccc
Confidence            9999999999999999999999999999888764    778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcch
Q 018042          176 FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDV  254 (361)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (361)
                      .+.+..+|..+++.++........  +||+.+++.+++.++..+.. .+.+|+|+....... +++          +++.
T Consensus       157 ~~~~~~~g~~i~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~  223 (447)
T d1pw4a_         157 WNCAHNVGGGIPPLLFLLGMAWFN--DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEY----------KNDY  223 (447)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHHTC--CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTT----------CCC-
T ss_pred             cccccchhhhhhhhhhhhHhhhhh--cccccchhhhhhHHHHHHHHHHhcccchhhcccchh-hhh----------hhhc
Confidence            999999999999888766554333  79999988887777766655 446666643221111 000          0000


Q ss_pred             HHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhhc
Q 018042          255 EAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECG  333 (361)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~  333 (361)
                      .++.+  ++.+++....+...+..+    +.+.++......++.....+....+.|.++.+ .+.+..+.+.......++
T Consensus       224 ~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (447)
T d1pw4a_         224 PDDYN--EKAEQELTAKQIFMQYVL----PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA  297 (447)
T ss_dssp             --------------CCTHHHHHHTS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH
T ss_pred             ccchh--hccccccchhhHHHHHHH----cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhh
Confidence            00000  000000011111122222    23444444444555555567778888888865 599999999999999999


Q ss_pred             ccccccchhhHHHHhhhcccee
Q 018042          334 GSIGFGRNMWVKWMNRVRWRKL  355 (361)
Q Consensus       334 ~~~g~~~~~~~~l~dr~grr~~  355 (361)
                      .+++.++.++  +.||++|++.
T Consensus       298 ~~~~~~~~g~--~~~~~~~~~~  317 (447)
T d1pw4a_         298 GIPGTLLCGW--MSDKVFRGNR  317 (447)
T ss_dssp             HHHHHHHHHH--HHHHTSTTCH
T ss_pred             hhhhhhhhhh--hhhhcccccc
Confidence            9999999999  6999988753

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=5.1e-19  Score=156.58  Aligned_cols=250  Identities=11%  Similarity=-0.044  Sum_probs=149.9

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHhhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYML----IFGRLLLGVGV  149 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~r~l~G~~~  149 (361)
                      ++++|+|.++.|++.+++.++..+++++.|+++||+|||++++++..+..++..+..+..+....    ++.+.+.+.+.
T Consensus        35 ~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (417)
T d1pv7a_          35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL  114 (417)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTG
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence            45568999999999999999999999999999999999999999999998888888776655443    34455555555


Q ss_pred             hhhhhHHHHHHHhcCCc--ccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHH-HHhcccccC
Q 018042          150 GFANQSVPLYLSEMAPA--RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL-TLGALFLPE  226 (361)
Q Consensus       150 ~~~~~~~~~~~~e~~~~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~-~~~~~~~~e  226 (361)
                      +...........+..++  +++....+........+..+++.++..+...    +|+..+........+. .+..++.+|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (417)
T d1pv7a_         115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTD  190 (417)
T ss_dssp             GGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----cccccccchhhHHHHHHHHHHHHhcc
Confidence            55554444444443332  2345566777777888888888887766543    4666655544444444 444455776


Q ss_pred             ChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhH
Q 018042          227 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA  306 (361)
Q Consensus       227 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (361)
                      +++..   ++ +++.                      +.+.++.......+..+.+..+.............    ....
T Consensus       191 ~~~~~---~~-~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  240 (417)
T d1pv7a_         191 APSSA---TV-ANAV----------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY----DVFD  240 (417)
T ss_dssp             SCSSS---CS-SHHH----------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH----HHHH
T ss_pred             cccch---hh-hhhh----------------------hhhcccccccccccccccccccchhhhhHHHHHHH----Hhhh
Confidence            65321   11 0000                      00001111111222222322222222222222211    1222


Q ss_pred             HcHHHHHHh----cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042          307 FYAPLLFRT----IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  359 (361)
Q Consensus       307 ~~~~~~~~~----~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~  359 (361)
                      ...+.+...    .+.+....+.......++..++..+.++  +.||.++|+.+..+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~r~~~~~~~~~~  295 (417)
T d1pv7a_         241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL--IINRIGGKNALLLA  295 (417)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHH--HHHHHCHHHHHHHH
T ss_pred             ccccccccccccccccchhhhcccccccccccccchhhhhh--hhcccccccchhhh
Confidence            222222222    2334455666677778888889999998  69999999876544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=8.4e-14  Score=122.42  Aligned_cols=146  Identities=14%  Similarity=0.124  Sum_probs=126.2

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 018042           78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  157 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  157 (361)
                      +.+....+...+...++..++..+.+++.||+|||+.+.++.++..++.++..+.++.+.+++..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  334 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            44666778888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccchhhHH-HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc-ccC
Q 018042          158 LYLSEMAPARYRGAINNGF-QFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  226 (361)
Q Consensus       158 ~~~~e~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  226 (361)
                      .++.|.+|+++|++..++. +....+|..+++.+.+.+.+.   .||+..|++.+++.++..+...+ +++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999975 567788999999987776643   47999998888777766665544 443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=5.4e-10  Score=99.10  Aligned_cols=147  Identities=14%  Similarity=0.035  Sum_probs=110.9

Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHH---HHHHHHHhhh--hhhHHHHHHHHHHHHhh
Q 018042           74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAA---FLAGSALGGA--AVNVYMLIFGRLLLGVG  148 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~---~~~~~~~~~~--~~~~~~~~~~r~l~G~~  148 (361)
                      .+.++.+..+.+...+...++..++.++.|+++||++||+........   ..++......  ..+.+..+++-++.|++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  356 (447)
T d1pw4a_         277 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL  356 (447)
T ss_dssp             TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            556688999999999999999999999999999999987544333222   2222222222  45677778888889999


Q ss_pred             hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHH-HHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042          149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  223 (361)
Q Consensus       149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  223 (361)
                      .+...+....+..|.+|++.|+.+.++.+....+ |.++++.+.+.+.+.   .||+..|++.+...++..+...+
T Consensus       357 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         357 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999998776665 567778876665543   47999888777666665555443