Citrus Sinensis ID: 018056

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MDPQQQGAGATQAQPRPQPGDSSAILAVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQEISRNTSMKGSAYA
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcccEEEEEEEcccccccccccEEEEEccccccEEEEEEEEEcccccccccccccccEEEEEEEEEEEEcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHccccHHHHHHHHHHHHHcccEEEEcccccHHHHcHHHHHHHHHHHHHcccccccccc
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHcccccccccEEEEEEEEEEEEEEEEEEEcEEEcccccccccEEEEEcEEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccEEEcccccccEEcHHHHHHHccccccccccEccccc
mdpqqqgagatqaqprpqpgdssAILAVFLTFIAIVSLIlipssssvkSSLAILhqipeghvgvywRGGALLetithpgfhlklplithyepvqvtlqtdqvtdipcgtkggvminFEKIEVVNRLRKEYVYETLRDYGvqydktwiydKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVdctryapgieiisvrvtkptipdrIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNtkiffgekvpsmILDQRLLGNFLQEISRntsmkgsaya
mdpqqqgagatqaqprpqpGDSSAILAVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDipcgtkggvminfekievvnRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTryapgieiisvrvtkptipdrirrnfeqmeeERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQEisrntsmkgsaya
MDpqqqgagatqaqprpqpgDSSAILAVFLTFiaivslilipssssvksslailHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQEISRNTSMKGSAYA
***********************AILAVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRR***********VLIAI***************************************************MYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQE*************
*************************LAVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRN******************************************SKIL****************IDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRL********************
********************DSSAILAVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQ**************ISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQEISRN*********
*******************GDSSAILAVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQE*************
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDPQQQGAGATQAQPRPQPGDSSAILAVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQEISRNTSMKGSAYA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q6DKC0330 Erlin-2-B OS=Xenopus laev N/A no 0.836 0.915 0.569 8e-99
B5DEH2339 Erlin-2 OS=Rattus norvegi yes no 0.836 0.890 0.562 9e-99
Q5R7C5339 Erlin-2 OS=Pongo abelii G yes no 0.836 0.890 0.559 9e-99
O94905339 Erlin-2 OS=Homo sapiens G yes no 0.836 0.890 0.559 9e-99
A3QK16331 Erlin-2 OS=Danio rerio GN yes no 0.847 0.924 0.563 9e-99
Q8BFZ9340 Erlin-2 OS=Mus musculus G yes no 0.836 0.888 0.562 1e-98
Q1RMU4338 Erlin-2 OS=Bos taurus GN= yes no 0.836 0.893 0.552 5e-98
Q28J34335 Erlin-2 OS=Xenopus tropic yes no 0.797 0.859 0.565 8e-96
Q91X78346 Erlin-1 OS=Mus musculus G no no 0.836 0.872 0.543 1e-95
Q5RCJ9346 Erlin-1 OS=Pongo abelii G no no 0.795 0.829 0.564 6e-95
>sp|Q6DKC0|ERL2B_XENLA Erlin-2-B OS=Xenopus laevis GN=erlin2-b PE=2 SV=1 Back     alignment and function desciption
 Score =  360 bits (924), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 172/302 (56%), Positives = 226/302 (74%)

Query: 51  LAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTK 110
            + +H+I EGHVGVY+RGGALL T + PGFHL LP IT ++ VQ TLQTD+V ++PCGT 
Sbjct: 20  FSAIHKIEEGHVGVYYRGGALLTTTSGPGFHLMLPFITSFKSVQSTLQTDEVKNVPCGTS 79

Query: 111 GGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYID 170
           GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI+
Sbjct: 80  GGVMIYFDRIEVVNYLISSAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHNLQEVYIE 139

Query: 171 VFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEK 230
           +FDQIDE +K ALQ D    APGI I +VRVTKP IP+ IRRN+E ME E+T++LIA +K
Sbjct: 140 LFDQIDEDLKLALQKDLNLMAPGIIIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQK 199

Query: 231 QKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLAD 290
           QKV EKEAET +K AI EAEK A V++I   QK+MEK++ +K  EI++  +LAR++  AD
Sbjct: 200 QKVVEKEAETERKKAIIEAEKVAQVAQIKYGQKVMEKETEKKISEIEDFAFLAREKARAD 259

Query: 291 ADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQEIS 350
           A++Y   K AEANKL LTPEYL+L   +AIA N+KI+FG+ +P+M +D    G  +Q   
Sbjct: 260 AEYYTAQKAAEANKLKLTPEYLQLMKYQAIAANSKIYFGQDIPNMFMDSSSAGPRVQSAK 319

Query: 351 RN 352
           RN
Sbjct: 320 RN 321
Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).
Xenopus laevis (taxid: 8355)
>sp|B5DEH2|ERLN2_RAT Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7C5|ERLN2_PONAB Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1 Back     alignment and function description
>sp|O94905|ERLN2_HUMAN Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1 Back     alignment and function description
>sp|A3QK16|ERLN2_DANRE Erlin-2 OS=Danio rerio GN=erlin2 PE=2 SV=1 Back     alignment and function description
>sp|Q8BFZ9|ERLN2_MOUSE Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1 Back     alignment and function description
>sp|Q1RMU4|ERLN2_BOVIN Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1 Back     alignment and function description
>sp|Q28J34|ERLN2_XENTR Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1 Back     alignment and function description
>sp|Q91X78|ERLN1_MOUSE Erlin-1 OS=Mus musculus GN=Erlin1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RCJ9|ERLN1_PONAB Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
356577151361 PREDICTED: erlin-2-like [Glycine max] 0.991 0.991 0.791 1e-169
255542044365 SPFH domain-containing protein 2 precurs 0.955 0.945 0.831 1e-167
224112120341 predicted protein [Populus trichocarpa] 0.944 1.0 0.817 1e-167
356519804364 PREDICTED: erlin-2-B-like [Glycine max] 0.947 0.939 0.804 1e-165
357475039361 Erlin-2 [Medicago truncatula] gi|3555088 0.961 0.961 0.789 1e-162
449453029399 PREDICTED: LOW QUALITY PROTEIN: erlin-2- 0.941 0.852 0.788 1e-161
449529429398 PREDICTED: LOW QUALITY PROTEIN: erlin-2- 0.941 0.854 0.785 1e-161
225423479379 PREDICTED: erlin-2-B [Vitis vinifera] gi 0.919 0.875 0.789 1e-156
18395564356 SPFH/Band 7/PHB domain-containing membra 0.952 0.966 0.745 1e-156
297814652356 band 7 family protein [Arabidopsis lyrat 0.952 0.966 0.745 1e-155
>gi|356577151|ref|XP_003556691.1| PREDICTED: erlin-2-like [Glycine max] Back     alignment and taxonomy information
 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/360 (79%), Positives = 325/360 (90%), Gaps = 2/360 (0%)

Query: 1   MDPQQQGAGATQAQPRPQPGDSSAILAVFLTFIAIVSLILIPSSSSV-KSSLAILHQIPE 59
           MD QQ+ A + ++ PR Q  DS+AIL   L+F AIV+L+L+PS+S   ++SL+ILHQ+PE
Sbjct: 1   MDSQQRTAASPRSPPR-QGHDSTAILFTLLSFFAIVALVLLPSASPFFQNSLSILHQVPE 59

Query: 60  GHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEK 119
           GHVGVYWRGGALL+TIT PGFHLK+P +T YEPVQVTLQTD VTDIPCGTKGGVMI+F K
Sbjct: 60  GHVGVYWRGGALLKTITEPGFHLKMPFLTQYEPVQVTLQTDMVTDIPCGTKGGVMISFGK 119

Query: 120 IEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKM 179
           IEVVNRLRKE+V+ETL +YGV YDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKM
Sbjct: 120 IEVVNRLRKEFVFETLLNYGVHYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKM 179

Query: 180 KDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAE 239
           KDALQVDCTRYAPGIEI+SVRVTKPTIP+ IRRNFEQMEEERT+VLIAIEKQKVAEKEAE
Sbjct: 180 KDALQVDCTRYAPGIEILSVRVTKPTIPESIRRNFEQMEEERTKVLIAIEKQKVAEKEAE 239

Query: 240 TSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKE 299
           T KKMAISEAEKNANVSKILMEQKL+EKDSAR+QEEI+N MYLAR++ LADADFYRV+KE
Sbjct: 240 TMKKMAISEAEKNANVSKILMEQKLLEKDSARRQEEIENAMYLAREKSLADADFYRVIKE 299

Query: 300 AEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQEISRNTSMKGSA 359
           AEAN+L LTPE+L+LKFI+AIA+NTKIFFG+KVP+MILDQRLLGN L ++S   +M   A
Sbjct: 300 AEANRLKLTPEFLQLKFIQAIANNTKIFFGDKVPNMILDQRLLGNLLHDVSSGRTMTTKA 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542044|ref|XP_002512086.1| SPFH domain-containing protein 2 precursor, putative [Ricinus communis] gi|223549266|gb|EEF50755.1| SPFH domain-containing protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224112120|ref|XP_002316089.1| predicted protein [Populus trichocarpa] gi|222865129|gb|EEF02260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519804|ref|XP_003528559.1| PREDICTED: erlin-2-B-like [Glycine max] Back     alignment and taxonomy information
>gi|357475039|ref|XP_003607805.1| Erlin-2 [Medicago truncatula] gi|355508860|gb|AES90002.1| Erlin-2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449453029|ref|XP_004144261.1| PREDICTED: LOW QUALITY PROTEIN: erlin-2-B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449529429|ref|XP_004171702.1| PREDICTED: LOW QUALITY PROTEIN: erlin-2-B-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|225423479|ref|XP_002267076.1| PREDICTED: erlin-2-B [Vitis vinifera] gi|297738083|emb|CBI27284.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18395564|ref|NP_027545.1| SPFH/Band 7/PHB domain-containing membrane-associated protein [Arabidopsis thaliana] gi|20197740|gb|AAD17426.2| expressed protein [Arabidopsis thaliana] gi|21593711|gb|AAM65678.1| unknown [Arabidopsis thaliana] gi|330250615|gb|AEC05709.1| SPFH/Band 7/PHB domain-containing membrane-associated protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297814652|ref|XP_002875209.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297321047|gb|EFH51468.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2063857356 AT2G03510 "AT2G03510" [Arabido 0.825 0.837 0.815 7.9e-133
MGI|MGI:2387215340 Erlin2 "ER lipid raft associat 0.786 0.835 0.588 8.6e-88
RGD|1309010339 Erlin2 "ER lipid raft associat 0.786 0.837 0.588 8.6e-88
UNIPROTKB|E5RHW4338 ERLIN2 "Erlin-2" [Homo sapiens 0.786 0.840 0.584 1.4e-87
UNIPROTKB|O94905339 ERLIN2 "Erlin-2" [Homo sapiens 0.786 0.837 0.584 1.4e-87
UNIPROTKB|F1RX83339 ERLIN2 "Uncharacterized protei 0.786 0.837 0.584 1.4e-87
UNIPROTKB|Q5R7C5339 ERLIN2 "Erlin-2" [Pongo abelii 0.786 0.837 0.584 1.4e-87
UNIPROTKB|Q1RMU4338 ERLIN2 "Erlin-2" [Bos taurus ( 0.786 0.840 0.580 2.3e-87
UNIPROTKB|E2QY23337 ERLIN2 "Uncharacterized protei 0.786 0.842 0.584 2.3e-87
UNIPROTKB|F1NBD0344 ERLIN2 "Uncharacterized protei 0.786 0.825 0.580 2.9e-87
TAIR|locus:2063857 AT2G03510 "AT2G03510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1302 (463.4 bits), Expect = 7.9e-133, P = 7.9e-133
 Identities = 243/298 (81%), Positives = 274/298 (91%)

Query:    55 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVM 114
             HQ+PEGHVG YWRGGALL  IT PGFHLKLP IT+YEPVQVTLQTDQV DIPCGTKGGV+
Sbjct:    48 HQVPEGHVGAYWRGGALLNIITEPGFHLKLPFITNYEPVQVTLQTDQVRDIPCGTKGGVL 107

Query:   115 INFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQ 174
             I FEKIEVVNRLRK++VY+TL +YGV YD TWIYDKIHHEINQFCSSHSLQQVYID+FDQ
Sbjct:   108 ITFEKIEVVNRLRKDFVYDTLLNYGVNYDNTWIYDKIHHEINQFCSSHSLQQVYIDIFDQ 167

Query:   175 IDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVA 234
             IDE+MKDALQ DCTRYAPGIEI+SVRVTKP IP+ +RRNFEQMEEERT+VLIAIEKQ+VA
Sbjct:   168 IDERMKDALQADCTRYAPGIEILSVRVTKPKIPESVRRNFEQMEEERTKVLIAIEKQRVA 227

Query:   235 EKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFY 294
             EKEAET K MAISEAEKNANVSKILM+QKL EKDS+R++ +I+NQMYL RQ+ LADAD+Y
Sbjct:   228 EKEAETKKIMAISEAEKNANVSKILMQQKLTEKDSSRREADIENQMYLDRQKSLADADYY 287

Query:   295 RVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQRLLGNFLQEISRN 352
             RVL+EAEANKL LTPE+LELKFI+AIA NTKIFFG+KVP+M+LDQRLLGNFL   +++
Sbjct:   288 RVLREAEANKLKLTPEFLELKFIDAIARNTKIFFGDKVPNMVLDQRLLGNFLNHSTKD 345
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005730 "nucleolus" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
MGI|MGI:2387215 Erlin2 "ER lipid raft associated 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309010 Erlin2 "ER lipid raft associated 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E5RHW4 ERLIN2 "Erlin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O94905 ERLIN2 "Erlin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RX83 ERLIN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R7C5 ERLIN2 "Erlin-2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q1RMU4 ERLIN2 "Erlin-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QY23 ERLIN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBD0 ERLIN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1RMU4ERLN2_BOVINNo assigned EC number0.55290.83650.8934yesno
Q6DKC0ERL2B_XENLANo assigned EC number0.56950.83650.9151N/Ano
Q5XH03ERL2A_XENLANo assigned EC number0.55080.83650.9014N/Ano
Q5R7C5ERLN2_PONABNo assigned EC number0.55960.83650.8908yesno
O94905ERLN2_HUMANNo assigned EC number0.55960.83650.8908yesno
A3QK16ERLN2_DANRENo assigned EC number0.56310.84760.9244yesno
B5DEH2ERLN2_RATNo assigned EC number0.56290.83650.8908yesno
Q28J34ERLN2_XENTRNo assigned EC number0.56590.79770.8597yesno
Q8BFZ9ERLN2_MOUSENo assigned EC number0.56290.83650.8882yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
cd03406280 cd03406, Band_7_3, A subgroup of the band 7 domain 1e-176
smart00244160 smart00244, PHB, prohibitin homologues 3e-21
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 1e-19
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 8e-11
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 3e-09
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 7e-07
TIGR01933261 TIGR01933, hflK, HflK protein 1e-06
TIGR01932317 TIGR01932, hflC, HflC protein 3e-04
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 4e-04
>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  491 bits (1265), Expect = e-176
 Identities = 175/277 (63%), Positives = 223/277 (80%)

Query: 53  ILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGG 112
            LH+I EGHVGVY+RGGALL + + PGFHL LP IT Y+ VQVTLQTD+V ++PCGT GG
Sbjct: 4   ALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGG 63

Query: 113 VMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVF 172
           VMI F++IEVVN L  + VY+ +++Y   YDKT I++KIHHE+NQFCS H+LQ+VYID+F
Sbjct: 64  VMIYFDRIEVVNFLIPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLF 123

Query: 173 DQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQK 232
           DQIDE +K ALQ D TR APG+EI +VRVTKP IP+ IRRN+E ME E+T++LIAI+KQK
Sbjct: 124 DQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNYELMEAEKTKLLIAIQKQK 183

Query: 233 VAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADAD 292
           V EKEAET +K A+ EAEK A V+KIL  QK+MEK++ ++  EI+++ +LAR++  ADA+
Sbjct: 184 VVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLAREKAKADAE 243

Query: 293 FYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFG 329
           +Y   KEAEANKL LTPEYLEL   EAIA N+KI+FG
Sbjct: 244 YYTAQKEAEANKLKLTPEYLELMKYEAIAANSKIYFG 280

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 280
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|233644 TIGR01932, hflC, HflC protein Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
KOG2962322 consensus Prohibitin-related membrane protease sub 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
KOG2620301 consensus Prohibitins and stomatins of the PID sup 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.97
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.95
KOG2621288 consensus Prohibitins and stomatins of the PID sup 99.94
KOG3090290 consensus Prohibitin-like protein [Posttranslation 99.93
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.92
KOG3083271 consensus Prohibitin [Posttranslational modificati 99.84
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.81
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.75
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.64
KOG2668 428 consensus Flotillins [Intracellular trafficking, s 99.57
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.55
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.27
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.07
PTZ00491850 major vault protein; Provisional 98.52
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 98.2
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 97.15
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 97.05
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 96.81
PRK11029334 FtsH protease regulator HflC; Provisional 96.63
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 96.28
COG1580159 FliL Flagellar basal body-associated protein [Cell 95.63
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 95.58
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 95.34
PRK10930419 FtsH protease regulator HflK; Provisional 94.83
KOG2668428 consensus Flotillins [Intracellular trafficking, s 94.51
PRK13665316 hypothetical protein; Provisional 94.46
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 92.44
KOG2620301 consensus Prohibitins and stomatins of the PID sup 91.87
COG2268548 Uncharacterized protein conserved in bacteria [Fun 88.92
PF0374899 FliL: Flagellar basal body-associated protein FliL 88.39
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 88.09
PRK01558198 V-type ATP synthase subunit E; Provisional 84.8
PRK01005207 V-type ATP synthase subunit E; Provisional 84.56
PRK06231205 F0F1 ATP synthase subunit B; Validated 81.99
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 81.67
COG4864328 Uncharacterized protein conserved in bacteria [Fun 80.76
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
Probab=100.00  E-value=9.8e-51  Score=381.32  Aligned_cols=280  Identities=63%  Similarity=0.987  Sum_probs=250.2

Q ss_pred             hhceEEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEEEEEEEEEeccchhH
Q 018056           50 SLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKE  129 (361)
Q Consensus        50 l~~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v~~v~~rI~dp~~~~  129 (361)
                      +++|+++|++|++|||+|||++.+++++|||||++||+++|..+|+++++.+..++++.|+|++++.++.|.+.+..++.
T Consensus         1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~   80 (280)
T cd03406           1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPD   80 (280)
T ss_pred             CCceEEEECCCeEEEEEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHH
Confidence            35789999999999999999998777899999999999999999999988877677889999998866545433332233


Q ss_pred             HHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChh
Q 018056          130 YVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDR  209 (361)
Q Consensus       130 ~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~  209 (361)
                      .+|+.+.+|+.++....|.+.+++++|+++|+++++++++++|++|...+++.+++.++.|.+||+|.+|.|++++||++
T Consensus        81 ~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~  160 (280)
T cd03406          81 SVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA  160 (280)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence            48888877888888999999999999999999999999998999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhccc
Q 018056          210 IRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLA  289 (361)
Q Consensus       210 i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~A  289 (361)
                      +.++|++|++||+++.+|.|.....+.+||.++.....+|+++++++.+.-++++.++|+.+..++.+.+++.++.++.|
T Consensus       161 V~~aferM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (280)
T cd03406         161 IRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLAREKAKA  240 (280)
T ss_pred             HHHHHHHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhhcc
Confidence            99999999999999887776666555556555666777889999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccccCcHHHHHHHHHHHHhccCeEEEc
Q 018056          290 DADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFG  329 (361)
Q Consensus       290 ea~~~~~~~~a~a~~~~l~~~~l~~~~~e~~~~~~~ii~~  329 (361)
                      ||++|...+++++|+..+||+||+|+.++++..|+|||++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (280)
T cd03406         241 DAEYYTAQKEAEANKLKLTPEYLELMKYEAIAANSKIYFG  280 (280)
T ss_pred             CHHHHHHHHHHhhchhcCCHHHHHHHHHHHHHhcCccccC
Confidence            9999999999999999999999999999999999999863

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK06231 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.9 bits (126), Expect = 9e-08
 Identities = 59/418 (14%), Positives = 123/418 (29%), Gaps = 137/418 (32%)

Query: 48  KSSLAI-------LHQIPEGHVGVYW-------RGGALLETITHPGFHLKLPLITHYEPV 93
           K+ +A+       +    +    ++W           +LE +          L+   +P 
Sbjct: 163 KTWVALDVCLSYKVQCKMDF--KIFWLNLKNCNSPETVLEMLQK--------LLYQIDP- 211

Query: 94  QVTLQTDQVTDIPCGTKGGVMINFEKI-EVVNRLRKEYVYET----LRDYGVQYDKTW-- 146
             T ++D  ++I         +    I   + RL K   YE     L +  VQ  K W  
Sbjct: 212 NWTSRSDHSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNA 261

Query: 147 ---------------IYDKIH----------HEINQFCSSHSLQQ----VYIDVFD---- 173
                          + D +           H                 +     D    
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 174 ----------QIDEKMKDAL-------QVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQ 216
                      I E ++D L        V+C +    IE  S+ V +P      R+ F++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEP---AEYRKMFDR 377

Query: 217 M----------------------EEERTRVLIAIEKQKVAEKEAETSKK----MAISEAE 250
           +                      + +   V+  + K  + EK+ + S      + +    
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 251 KNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRV----LKEAE-ANKL 305
           K  N     + + +++  +  K  + D+ +         D  FY      LK  E   ++
Sbjct: 438 KLENEYA--LHRSIVDHYNIPKTFDSDDLIPPY-----LDQYFYSHIGHHLKNIEHPERM 490

Query: 306 MLTPE-YLELKFIEA--IADNTKIFFGEKVPSMILDQRLLGNFLQEISRNTSMKGSAY 360
            L    +L+ +F+E     D+T       + + +   +    ++ +         +A 
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.88
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.88
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.78
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.65
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.33
2zuo_A861 MVP, major vault protein; repeat domains, protein- 88.32
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 82.74
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
Probab=99.88  E-value=4.4e-23  Score=173.40  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=97.7

Q ss_pred             EEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHH
Q 018056           82 LKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQF  158 (361)
Q Consensus        82 f~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~v  158 (361)
                      ++.||++++.++|+|+++.++....+.|+|++.+   .++.|||.||.+  ++      |+.++++..+..++++++|++
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~--~~------~~v~~~~~~l~~~~~~~lR~v   74 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATL--AV------ANITNADSATRLLAQTTLRNA   74 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHH--HH------HSSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHH--hH------hhhhhHHHHHHHHHHHHHHHH
Confidence            6789999999999999988887777899999765   578999999987  23      377889999999999999999


Q ss_pred             hccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHH-HHHH
Q 018056          159 CSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFE-QMEE  219 (361)
Q Consensus       159 i~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e-~m~A  219 (361)
                      +|+++++++++ +|++|+.++++.+++.+++|  ||+|.+|+|++++||++++++|+ +|+|
T Consensus        75 ig~~~ldeil~-~r~~i~~~i~~~l~~~~~~~--GI~V~~V~ikdi~~P~~v~~am~~~~~A  133 (133)
T 4fvg_A           75 LGTKNLSQILS-DREEIAHHMQSTLDDATDDW--GIKVERVEIKDVKLPVQLQRAMAAEAEA  133 (133)
T ss_dssp             HHTSCHHHHHH-CHHHHHHHHHHHHHHHHGGG--TEEEEEEEEEEEECCCC-----------
T ss_pred             hccccHHHHHh-hHHHHHHHHHHHHHHHHhcC--CEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence            99999999998 89999999999999999999  99999999999999999999998 4443
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.64
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.1e-16  Score=132.13  Aligned_cols=125  Identities=16%  Similarity=0.188  Sum_probs=105.0

Q ss_pred             EEEEEEeeeeeeccccccccccCceEE---EEEEEEEeccchhH-HHHHHHhhcCccchHHHHHHHHHHHHHHHhccCch
Q 018056           89 HYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKE-YVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSL  164 (361)
Q Consensus        89 ~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~-~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl  164 (361)
                      ++.++|++.++.++....+.|+||+.+   .++.|||.++.+.. +....+..++.++.+..|++.+.+++|+++|+|++
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             ceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            355678888877777667889999876   46799999877631 11122223456778899999999999999999999


Q ss_pred             HHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHHH
Q 018056          165 QQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQ  216 (361)
Q Consensus       165 ~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~  216 (361)
                      +++++ +|++|.+.+++.+++.+++|  ||+|.+|.|+||++|+++.++|.+
T Consensus        86 ~el~~-~R~~i~~~v~~~i~~~l~~~--Gi~v~~v~I~dI~~~~~~~~a~~~  134 (143)
T d1wina_          86 EQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGK  134 (143)
T ss_dssp             HHHHH-THHHHHHHHHHHHHHHHTTT--TEEEEEEECCCEECTTCHHHHHCC
T ss_pred             HHHHh-CHHHHHHHHHHHHHHHHHHh--CeEEEEEEEEecCCcHHHHHHHHH
Confidence            99997 89999999999999999999  999999999999999999999984