Citrus Sinensis ID: 018060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Secondary Structure (PSIPRED)
cEEEEEEcccccccccccccccccccEEccccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHcHHccccEEEEEEcccccccHHHHHHHHHHccccccccEEEEEccEEccccHHHHHHHHHHccccEEEEEEEEccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEcHHHHHcccccccccccccHHHHHHcccEEEEEcccEEcccccHHHHHHHHHHHHHHHccccccccccccEEEccEEEccccEEccccEEcccEEEccccEEccccEEcccEEccccEEccccEEEccEEccccEEccccEEEccEEEccccEEcccEEEcccEEccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccHHHccccccccHHHcEEccEEHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHHHHHcccccccEEEEEccEEccccHHHHHHHHHHcccEEEEEEEEcccccccEEEEEcccccEEEEEEEccccccccEEEcEEEEEcHHHHHHcccccccHHHHHHHHHHHcccEEEEEccccEEccccHHHHHHHHHHHHHHHHcccccEcccccEEEccEEEccccEEccccEEcccEEEcccEEEcccEEEEEEEEEccEEEcccEEEEcEEEEccEEEccEEEEEEEEEEcccEEEccEEEEccEEEEcccEEccccccccEcc
Coil and Loop (DISEMBL)
MKALILvggfgtrlrpltlsvpkplvefankpMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIIcsqeteplgtagplALARdkliddtgepffvlnsdviseypfaEMIEFHkahggeasimvtkvdepskyGVVVMEESTgkvekfvekpklfvgnkinagiyllnpavldrielrptsiekevfpkiaLEGKLFAMVLpgfwmdigqprdyITGLRLYLDSLRKKSSLKLATGANIVGNVLVHesaqigegcligpdvavgpgcvvesgvrlsrcTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDeiysnggvvlphkeikssilkpeivm
Flexible Loop (DISEMBL)
mkalilvggfgtrlrpltlsvPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKhacisssiigwhstVGQWARVENMTILGEDVHVCDEIYsnggvvlphkeikssilkpeivm
Low Complexity Region (SEG)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGlrlyldslrkksslklATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered region (IsUnstruct)
***LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI***********
Disordered Region (DISOPRED)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK*****LAT*ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered Region (DISEMBL)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered Region (DISPRO)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q6Z9A3	361	Probable mannose-1-phosph	yes	no	1.0	1.0	0.889	0.0
Q84JH5	361	Probable mannose-1-phosph	no	no	1.0	1.0	0.889	0.0
Q941T9	361	Probable mannose-1-phosph	yes	no	1.0	1.0	0.889	0.0
O22287	361	Mannose-1-phosphate guany	yes	no	1.0	1.0	0.894	0.0
Q9M2S0	364	Probable mannose-1-phosph	no	no	1.0	0.991	0.835	1e-178
Q8H1Q7	331	Probable mannose-1-phosph	no	no	0.908	0.990	0.762	1e-145
Q54K39	359	Mannose-1-phosphate guany	yes	no	0.994	1.0	0.634	1e-137
Q9Y5P6	360	Mannose-1-phosphate guany	yes	no	0.997	1.0	0.626	1e-134
Q68EY9	360	Mannose-1-phosphate guany	N/A	no	0.997	1.0	0.614	1e-133
Q68EQ1	360	Mannose-1-phosphate guany	yes	no	0.997	1.0	0.612	1e-133

>sp|Q6Z9A3|GMPP3_ORYSJ Probable mannose-1-phosphate guanylyltransferase 3 OS=Oryza sativa subsp. japonica GN=Os08g0237200 PE=2 SV=1

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/361 (88%), Positives = 348/361 (96%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALK VGVTEVVLAINY+PEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           +I+FHK HGGEA+IMVTKVDEPSKYGVVVMEE+TG VEKFVEKPK+FVGNKINAGIYLLN
Sbjct: 121 LIKFHKNHGGEATIMVTKVDEPSKYGVVVMEEATGMVEKFVEKPKIFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIEL+PTSIEKEVFP+I+ + KLFAMVLPGFWMD+GQPRDYITGLRLYLDSLRK+
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRISADAKLFAMVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           S+ +LATGA+IVGNVLVHESA+IGEGCLIGPDVA+GPGCVVE GVRLSRCTVMRGVRIKK
Sbjct: 241 SANRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACIS+SIIGWHSTVGQWAR+ENMTILGEDVHV DE+Y+NGGV+LPHKEIKSSILKPEIV
Sbjct: 301 HACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVILPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3

>sp|Q84JH5|GMPP1_ORYSJ Probable mannose-1-phosphate guanylyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0268400 PE=2 SV=1

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/361 (88%), Positives = 346/361 (95%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+F NKPMILHQIEALK VGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE+KLGIKI CSQETEPLGTAGPLALARDKL D +G+PFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           +I+FHK+HGGEA+IMVTKVDEPSKYGVVVME+ T KVE+FVEKPK+FVGNKINAGIYLLN
Sbjct: 121 LIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIEL+PTSIEKEVFP+IA +  LFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           +  KLA+GA+++GNVLVHE+A IGEGCLIGPDVAVGPGCVVE+GVRLSRCTVMRG R+KK
Sbjct: 241 APAKLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSIIGWHSTVG WARVENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGMWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q941T9|GMPP2_ORYSJ Probable mannose-1-phosphate guanylyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os01g0847200 PE=2 SV=1

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/361 (88%), Positives = 347/361 (96%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALK VGVTEVVLAINY+PEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           +I+FHK+HGGEA+IMVTKVDEPSKYGVVVMEE TG VEKFVEKPK+FVGNKINAGIYLLN
Sbjct: 121 LIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKFVEKPKIFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIEL+PTSIEKEVFP+IA + KLFA+VLPGFWMD+GQPRDYITGLRLYLDSLRK+
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIASDAKLFALVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           S+ +LATGA+IVGNVLVHESA+IGEGCLIGPDVA+GPGCVVE GVRLSRCTVMRGV IKK
Sbjct: 241 STNRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVHIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACIS+SIIGWHSTVGQWAR+ENMTILGEDVHV DE+Y+NGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/361 (89%), Positives = 341/361 (94%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALKAVGV EVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVDEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KL IKI CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYP  E
Sbjct: 61  LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           M+EFHK+HGGEASIMVTKVDEPSKYGVVVMEESTG+VEKFVEKPKL+VGNKINAGIYLLN
Sbjct: 121 MLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLD+IELRPTSIEKE FPKIA    L+AMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           S  KL +G +IVGNVLV E+A IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIKK
Sbjct: 241 SPAKLTSGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSIIGWHSTVGQWAR+ENMTILGEDVHV DEIYSNGGVVLPHKEIKS+ILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Plays an essential role in plant growth and development and cell-wall architecture. Provides GDP-mannose, used for cell wall carbohydrate biosynthesis, protein N-glycosylation, as well as for the biosynthesis of the antioxidant ascorbate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q9M2S0|GMPP2_ARATH Probable mannose-1-phosphate guanylyltransferase 2 OS=Arabidopsis thaliana GN=At3g55590 PE=2 SV=1

 Score =  625 bits (1612), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/364 (83%), Positives = 336/364 (92%), Gaps = 3/364 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE-- 58
           MKALILVGGFGTRLRPLTLS+PKPLV+FANKPMILHQIEALKA+GV EVVLAINY+PE  
Sbjct: 1   MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQL 60

Query: 59  -VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP 117
            VM  F  + EA LGIKI CSQETEPLGTAGPLALARDKL+D +G+PFFVLNSDVIS+YP
Sbjct: 61  LVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYP 120

Query: 118 FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 177
             EMI FH AHGGEASIMVTKVDEPSKYGVVVMEE+TG+VE+FVEKPKLFVGNKINAGIY
Sbjct: 121 LEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIY 180

Query: 178 LLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSL 237
           LLNP+VLDRIELRPTSIEKE+FP+IA   KL+AM+LPGFWMDIGQPRDYITGLRLYLDSL
Sbjct: 181 LLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSL 240

Query: 238 RKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 297
           RKKS  KLATG +I+GNVLV E+A+IGEGCLIGP+VA+GPGCVVESGVRLS CTVMRGV 
Sbjct: 241 RKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVH 300

Query: 298 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKP 357
           +K++ACISSSIIGWHSTVGQWARVENM+ILG++V+VCDEIY NGGVVL +KEIKS ILKP
Sbjct: 301 VKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKP 360

Query: 358 EIVM 361
           +IVM
Sbjct: 361 DIVM 364

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q8H1Q7|GMPP3_ARATH Probable mannose-1-phosphate guanylyltransferase 3 OS=Arabidopsis thaliana GN=At4g30570 PE=2 SV=1

 Score =  515 bits (1326), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/329 (76%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 21  VPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQ 79
           +PKPLV+F NKPMILHQIEALK  GVTEVVLAIN+Q PEVMLNF+KE+E KL IKI  SQ
Sbjct: 1   MPKPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQ 60

Query: 80  ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV 139
           ETEPLGTAGPLALARDKL+D++G+PFFVLNSDVI EYP  EMIEFHK +  EASIMVT+V
Sbjct: 61  ETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV 120

Query: 140 DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVF 199
           D+PSKYGVVV EE T +VE FVEKPK FVGNKINAGIYLL+P+VLDRIELR TSIEKE+F
Sbjct: 121 DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVLDRIELRRTSIEKEIF 180

Query: 200 PKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHE 259
           PKIA E KL+AMVLPGFWMDIGQP+DYITG R+YL+SLR+K+  +LATG NI+GNVLVHE
Sbjct: 181 PKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLREKTPQELATGDNIIGNVLVHE 240

Query: 260 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 319
           SA IGEGCLIGPDV +GPGCV++SGVRL  CTVMRGV IK+HACIS+SI+GW STVG+WA
Sbjct: 241 SAVIGEGCLIGPDVVIGPGCVIDSGVRLFGCTVMRGVWIKEHACISNSIVGWDSTVGRWA 300

Query: 320 RVENMTILGEDVHVCDEIYSNGGVVLPHK 348
           RV N+T+LG+DV+V D    N GVV+  +
Sbjct: 301 RVFNITVLGKDVNVADAEVYNSGVVIEEQ 329

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q54K39|GMPPB_DICDI Mannose-1-phosphate guanyltransferase beta OS=Dictyostelium discoideum GN=gmppB PE=2 SV=1

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/361 (63%), Positives = 293/361 (81%), Gaps = 2/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKP+VEFANK MILHQIEAL  +GV EVVLA+NY+P++M
Sbjct: 1   MKALILVGGFGTRLRPLTLSKPKPIVEFANKAMILHQIEALCKIGVNEVVLAVNYRPQLM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             +L+ +E KLGIKI  S ET PLGTAGPLALARD L D  GEPFFVLNSD+I ++PFA+
Sbjct: 61  SQYLEPYEKKLGIKISYSHETVPLGTAGPLALARDLLND--GEPFFVLNSDIICDFPFAD 118

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           ++ FHK+HGGE +IMVTKV+EPSKYGVVV +E  G++ KFVEKP+++VGNKINAG+Y+ N
Sbjct: 119 LLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIFN 178

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P +LDRI+ +PTSIEKE+FP +A + +L+ M L GFWMD+GQP+D+++G+ LYL+SL+ K
Sbjct: 179 PTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSK 238

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
               LATG  I+G VL+  S+ I  GCLIGP+V +GP CV++ G RL   TV+ G  I K
Sbjct: 239 QPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIGK 298

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           ++ I S+IIGW+S++G+W R+EN ++LGEDVHV DE+Y NGG +LPHK I SSI +PEI+
Sbjct: 299 NSWIKSTIIGWNSSIGKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEII 358

Query: 361 M 361
           M
Sbjct: 359 M 359

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q9Y5P6|GMPPB_HUMAN Mannose-1-phosphate guanyltransferase beta OS=Homo sapiens GN=GMPPB PE=1 SV=2

 Score =  478 bits (1229), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/361 (62%), Positives = 288/361 (79%), Gaps = 1/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGG+GTRLRPLTLS PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +V+
Sbjct: 1   MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct: 61  EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           M++FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           PAVL RI+L+PTSIEKEVFP +A EG+L+AM L GFWMDIGQP+D++TG+ L+L SLR+K
Sbjct: 180 PAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
              +L +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R  RI+ 
Sbjct: 240 QPERLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDARIRS 299

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct: 300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query: 361 M 361
           M
Sbjct: 360 M 360

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q68EY9|GMPBA_XENLA Mannose-1-phosphate guanyltransferase beta-A OS=Xenopus laevis GN=gmppb-a PE=2 SV=1

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 222/361 (61%), Positives = 289/361 (80%), Gaps = 1/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGG+GTRLRPLTLSVPKPLV+F NKP++LHQ+EAL   GVT V+LA++Y  +++
Sbjct: 1   MKALILVGGYGTRLRPLTLSVPKPLVDFCNKPILLHQVEALVKAGVTHVILAVSYMSDML 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              +KE E +LGI+I  S E EPLGTAGPLALAR+ L+ +  EPFFVLNSDVI ++PF +
Sbjct: 61  EKEMKEQEKRLGIRISMSHEKEPLGTAGPLALARE-LLTENSEPFFVLNSDVICDFPFED 119

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           M+ FHK HG E +I+VTKV+EPSKYGVVV E  +G++++FVEKP++FV NKIN+G+Y+ +
Sbjct: 120 MVRFHKHHGKEGTIVVTKVEEPSKYGVVVYETESGQIQRFVEKPQVFVSNKINSGLYIFS 179

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           PAVLDRI+LRPTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG+ +YL S+R+K
Sbjct: 180 PAVLDRIQLRPTSIEKEIFPAMAQEGQLYAMELQGFWMDIGQPKDFLTGMCMYLQSVRQK 239

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
               L  G   +GNVLV  +A+IG+ C IGP+V +GPG  VE GVR+ RCTVM+G R+  
Sbjct: 240 HPEWLHAGPGFIGNVLVDPTAKIGQNCSIGPNVTIGPGVTVEDGVRIKRCTVMKGSRLHS 299

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           H+ + SSI+GW S+VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct: 300 HSWLESSIVGWSSSVGQWVRMENVTVLGEDVIVNDELYLNGANVLPHKCISESVPEPRII 359

Query: 361 M 361
           M
Sbjct: 360 M 360

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q68EQ1|GMPPB_XENTR Mannose-1-phosphate guanyltransferase beta OS=Xenopus tropicalis GN=gmppb PE=2 SV=1

 Score =  474 bits (1219), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/361 (61%), Positives = 288/361 (79%), Gaps = 1/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGG+GTRLRPLTLSVPKPLV+F NKP++LHQ+EAL   GV  V+LA++Y  +++
Sbjct: 1   MKALILVGGYGTRLRPLTLSVPKPLVDFCNKPILLHQVEALVKAGVNHVILAVSYMSDML 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              +KE E +LGI+I  S E EPLGTAGPLALAR+ L+ +  +PFFVLNSDVI ++PF E
Sbjct: 61  EKEMKEQEKRLGIRISMSHEKEPLGTAGPLALARE-LLTENSDPFFVLNSDVICDFPFEE 119

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           M+ FHK HG E +I+VTKV+EPSKYGVVV E  +G++++FVEKP++FV NKIN+G+Y+ +
Sbjct: 120 MVRFHKHHGKEGTIVVTKVEEPSKYGVVVYEAESGQIQRFVEKPQVFVSNKINSGLYIFS 179

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           PAVLDRI+LRPTSIEKE+FP +A EG+LFAM L GFWMDIGQP+D++TG+ +YL S+R+K
Sbjct: 180 PAVLDRIQLRPTSIEKEIFPAMAQEGQLFAMELQGFWMDIGQPKDFLTGMCMYLQSVRQK 239

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
               L  G   +GNVLV  +A+IG+ C IGP+V +GPG  VE GVR+ RCT+M+G R+  
Sbjct: 240 HPEWLHVGPGFIGNVLVDPTAKIGQNCSIGPNVTIGPGVTVEDGVRIKRCTIMKGSRLHS 299

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           H+ + SSI+GW S+VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct: 300 HSWLESSIVGWSSSVGQWVRMENVTVLGEDVIVNDELYLNGANVLPHKCISESVPEPRII 359

Query: 361 M 361
           M
Sbjct: 360 M 360

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
319739577	361	putative GDP-mannose pyrophosphorylase [	1.0	1.0	0.988	0.0
225449380	361	PREDICTED: mannose-1-phosphate guanylylt	1.0	1.0	0.941	0.0
224038262	361	GDP-D-mannose pyrophosphorylase [Actinid	1.0	1.0	0.930	0.0
113952525	361	GDP-D-mannose pyrophosphorylase [Viola b	1.0	1.0	0.933	0.0
255566484	361	mannose-1-phosphate guanyltransferase, p	1.0	1.0	0.919	0.0
357492373	361	Mannose-1-phosphate guanyltransferase [M	1.0	1.0	0.922	0.0
218117841	361	GDP-D-mannose pyrophosphorylase [Prunus	1.0	1.0	0.925	0.0
4103324	361	GDP-mannose pyrophosphorylase [Solanum t	1.0	1.0	0.922	0.0
80973464	361	GDP-mannose pyrophosphorylase [Malpighia	1.0	1.0	0.911	0.0
350537127	361	GDP-mannose pyrophosphorylase [Solanum l	1.0	1.0	0.919	0.0

>gi|319739577|gb|ADV59923.1| putative GDP-mannose pyrophosphorylase [Citrus unshiu]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/361 (98%), Positives = 358/361 (99%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS KLATGANIVGNVLVHESAQIGE CLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSFKLATGANIVGNVLVHESAQIGEECLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV LPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVALPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449380|ref|XP_002282422.1| PREDICTED: mannose-1-phosphate guanylyltransferase 1 isoform 1 [Vitis vinifera]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/361 (94%), Positives = 353/361 (97%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKAVGV+EVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVSEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEAKLGI I CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF E
Sbjct: 61  LNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEES G+V++FVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESIGRVDRFVEKPKLFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIELRPTSIEKEVFPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS KLA+GA+IVGNVLV ESA+IGEGCLIGPDVA+GPGCVVE+GVRLSRCTVMRGVRIKK
Sbjct: 241 SSSKLASGAHIVGNVLVDESAKIGEGCLIGPDVAIGPGCVVEAGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224038262|gb|ACN38266.1| GDP-D-mannose pyrophosphorylase [Actinidia latifolia]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/361 (93%), Positives = 350/361 (96%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA+GV+EVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVSEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KLGIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYP  E
Sbjct: 61  LNFLKDFETKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MIEFHK+HGGEASIMVTKVDEPSKYGVVVMEESTG+VEKFVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKFVEKPKLFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIELRPTSIEKE+FPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELRPTSIEKEIFPKIAGEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           +S KLATG +IVGNVLV E+A IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 TSSKLATGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV LPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVALPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Actinidia latifolia

Species: Actinidia latifolia

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113952525|gb|ABI48955.1| GDP-D-mannose pyrophosphorylase [Viola baoshanensis]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/361 (93%), Positives = 349/361 (96%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKAVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL  D+GEPFFVLNSDVISEYPF E
Sbjct: 61  LNFLKQFETKLGITITCSQETEPLGTAGPLALARDKLTGDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MIEFHK+HGGEASIMVTKVDEPSKYGVVVMEESTGKV+KFVEKPK+FVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGKVDKFVEKPKIFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLD IELRPTSIEKEVFPKIA E KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDLIELRPTSIEKEVFPKIAAEKKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS KLATGA+IVGNVLV E+A IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSPKLATGASIVGNVLVDETATIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSI+GWHSTVGQWARVENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIVGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Viola baoshanensis

Species: Viola baoshanensis

Genus: Viola

Family: Violaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566484|ref|XP_002524227.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] gi|223536504|gb|EEF38151.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/361 (91%), Positives = 351/361 (97%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEAKLGI I CSQETEPLGTAGPLALARDKLID++G+PFFVLNSDVISEYP  E
Sbjct: 61  LNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDESGDPFFVLNSDVISEYPLKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE+FVEKPK+FVGNKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVERFVEKPKIFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIEL+PTSIEKEVFPKIA + +LFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELKPTSIEKEVFPKIAADKQLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS +LA GA++VGNVL+ E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSSRLANGAHVVGNVLIDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSI+GWHSTVGQW R+ENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIVGWHSTVGQWTRIENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492373|ref|XP_003616475.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula] gi|49246467|gb|AAT58365.1| GMPase [Medicago sativa] gi|355517810|gb|AES99433.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/361 (92%), Positives = 351/361 (97%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA GVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKATGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FEAKLGI I CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVIS+YP  E
Sbjct: 61  LNFLKDFEAKLGITISCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISDYPLKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MIEFHK+HGGEASIMVTKVDEPSKYGVVVMEE+TG+VEKFVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIELRPTSIEKE+FPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELRPTSIEKEIFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS KLA G+NIVGNV+V E+A+IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSSKLAGGSNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK++ILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKTNILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218117841|dbj|BAH03298.1| GDP-D-mannose pyrophosphorylase [Prunus persica]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/361 (92%), Positives = 348/361 (96%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA+GV+EVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVSEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           + FLKEFE K+GIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF +
Sbjct: 61  MTFLKEFETKVGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKQ 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MIEFHK+HGGEASIMVTKVDEPSKYGVVVMEESTGKV+KFVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGKVQKFVEKPKLFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIELRPTSIEKEVFP IA E KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 
Sbjct: 181 PSVLDRIELRPTSIEKEVFPNIAAENKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKN 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS KLA G+N+VGNVLV E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSSKLARGSNVVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACIS SIIGWHSTVGQWARVENMTILGEDVHV DEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISGSIIGWHSTVGQWARVENMTILGEDVHVSDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4103324|gb|AAD01737.1| GDP-mannose pyrophosphorylase [Solanum tuberosum]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/361 (92%), Positives = 349/361 (96%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEA LGIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF E
Sbjct: 61  LNFLKEFEASLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MI+FHK+HGGEAS+MVTKVDEPSKYGVVVMEESTG+VE+FVEKPKLFVGNKINAG YLLN
Sbjct: 121 MIQFHKSHGGEASLMVTKVDEPSKYGVVVMEESTGQVERFVEKPKLFVGNKINAGFYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRI+LRPTSIEKEVFPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSL+K 
Sbjct: 181 PSVLDRIQLRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLKKH 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS KLA+G +IVGNV+V ESA+IGEGCLIGPDVA+G GCV+ESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSPKLASGPHIVGNVIVDESAKIGEGCLIGPDVAIGSGCVIESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACIS SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISGSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|80973464|gb|ABB53473.1| GDP-mannose pyrophosphorylase [Malpighia glabra] gi|161898831|gb|ABX80393.1| GDP-mannose pyrophosphorylase [Malpighia glabra]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/361 (91%), Positives = 349/361 (96%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLVEFANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KL IKI CSQETEPLGTAGPLALARDKLID++GEPFFVLNSDVISEYP  E
Sbjct: 61  LNFLKDFEKKLDIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MIEFHK HGGEASIMVTKVDEPSKYGVVVMEESTG+VE+FVEKPK+FVGNKINAGIYLLN
Sbjct: 121 MIEFHKNHGGEASIMVTKVDEPSKYGVVVMEESTGRVERFVEKPKIFVGNKINAGIYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRIELRPTSIEKEVFPKIA +  L+AMVLPGFWMDIGQP+DYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAADNSLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKK 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS KLATG+N+VGNVLV E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSTKLATGSNVVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HAC+SSSIIGWHSTVGQWARVENMTILGEDVH+CDE+YSNGGVVLPHKEIKSSI+KPEIV
Sbjct: 301 HACVSSSIIGWHSTVGQWARVENMTILGEDVHLCDEVYSNGGVVLPHKEIKSSIIKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Malpighia glabra

Species: Malpighia glabra

Genus: Malpighia

Family: Malpighiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537127|ref|NP_001234025.1| GDP-mannose pyrophosphorylase [Solanum lycopersicum] gi|57340416|gb|AAT37498.2| GDP-mannose pyrophosphorylase [Solanum lycopersicum]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/361 (91%), Positives = 349/361 (96%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEA LGIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF E
Sbjct: 61  LNFLKEFEASLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           MI+FHK+HGGEAS+MVTKVDEPSKYGVVVMEESTG+VE+FVEKPKLFVGNKINAG YLLN
Sbjct: 121 MIQFHKSHGGEASLMVTKVDEPSKYGVVVMEESTGQVERFVEKPKLFVGNKINAGFYLLN 180

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           P+VLDRI+LRPTSIEKEVFPKIA E KL+AMVLPGFWMD+GQPRDYITGLRLYLDSL+K 
Sbjct: 181 PSVLDRIQLRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDVGQPRDYITGLRLYLDSLKKH 240

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
           SS KLA+G +IVGNV+V ESA+IGEGCLIGPDVA+G GCV+ESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSPKLASGPHIVGNVIVDESAKIGEGCLIGPDVAIGSGCVIESGVRLSRCTVMRGVRIKK 300

Query: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
           HACIS SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISGSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2005504	361	CYT1 "CYTOKINESIS DEFECTIVE 1"	1.0	1.0	0.855	4.3e-164
TAIR|locus:2100001	364	AT3G55590 [Arabidopsis thalian	1.0	0.991	0.796	1.1e-153
TAIR|locus:2118671	331	AT4G30570 [Arabidopsis thalian	0.897	0.978	0.749	9.6e-128
DICTYBASE|DDB_G0287619	359	gmppB "mannose-1-phosphate gua	0.994	1.0	0.614	1.1e-121
UNIPROTKB|Q9Y5P6	360	GMPPB "Mannose-1-phosphate gua	0.997	1.0	0.606	1.1e-117
UNIPROTKB|F1N7H5	360	GMPPB "Mannose-1-phosphate gua	0.997	1.0	0.606	1.4e-117
UNIPROTKB|E2R2I6	360	GMPPB "Uncharacterized protein	0.997	1.0	0.598	4.9e-117
UNIPROTKB|F1SPR4	360	GMPPB "Mannose-1-phosphate gua	0.997	1.0	0.598	4.9e-117
MGI|MGI:2660880	360	Gmppb "GDP-mannose pyrophospho	0.997	1.0	0.598	1e-116
UNIPROTKB|Q2YDJ9	360	GMPPB "Mannose-1-phosphate gua	0.997	1.0	0.601	1.3e-116

TAIR|locus:2005504 CYT1 "CYTOKINESIS DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 309/361 (85%), Positives = 327/361 (90%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALKAVGV EVVLAINYQPEVM
Sbjct:     1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVDEVVLAINYQPEVM 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             LNFLK+FE KL IKI CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYP  E
Sbjct:    61 LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLKE 120

Query:   121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
             M+EFHK+HGGEASIMVTKVDEPSKYGVVVMEESTG+VEKFVEKPKL+VGNKINAGIYLLN
Sbjct:   121 MLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLLN 180

Query:   181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 240
             P+VLD+IELRPTSIEKE FPKIA    L+AMVLPGFWMDIGQPRDYITG           
Sbjct:   181 PSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query:   241 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
                   +G +IVGNVLV E+A IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIKK
Sbjct:   241 SPAKLTSGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKK 300

Query:   301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
             HACISSSIIGWHSTVGQWAR+ENMTILGEDVHV DEIYSNGGVVLPHKEIKS+ILKPEIV
Sbjct:   301 HACISSSIIGWHSTVGQWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEIV 360

Query:   361 M 361
             M
Sbjct:   361 M 361

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=ISS;IMP

GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP

GO:0030244 "cellulose biosynthetic process" evidence=RCA;IMP

GO:0009408 "response to heat" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2100001 AT3G55590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 290/364 (79%), Positives = 322/364 (88%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE-- 58
             MKALILVGGFGTRLRPLTLS+PKPLV+FANKPMILHQIEALKA+GV EVVLAINY+PE  
Sbjct:     1 MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQL 60

Query:    59 -VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP 117
              VM  F  + EA LGIKI CSQETEPLGTAGPLALARDKL+D +G+PFFVLNSDVIS+YP
Sbjct:    61 LVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYP 120

Query:   118 FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 177
               EMI FH AHGGEASIMVTKVDEPSKYGVVVMEE+TG+VE+FVEKPKLFVGNKINAGIY
Sbjct:   121 LEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIY 180

Query:   178 LLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXX 237
             LLNP+VLDRIELRPTSIEKE+FP+IA   KL+AM+LPGFWMDIGQPRDYITG        
Sbjct:   181 LLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSL 240

Query:   238 XXXXXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 297
                     ATG +I+GNVLV E+A+IGEGCLIGP+VA+GPGCVVESGVRLS CTVMRGV 
Sbjct:   241 RKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVH 300

Query:   298 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKP 357
             +K++ACISSSIIGWHSTVGQWARVENM+ILG++V+VCDEIY NGGVVL +KEIKS ILKP
Sbjct:   301 VKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKP 360

Query:   358 EIVM 361
             +IVM
Sbjct:   361 DIVM 364

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2118671 AT4G30570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 245/327 (74%), Positives = 277/327 (84%)

Query:    21 VPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQ 79
             +PKPLV+F NKPMILHQIEALK  GVTEVVLAIN+Q PEVMLNF+KE+E KL IKI  SQ
Sbjct:     1 MPKPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQ 60

Query:    80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV 139
             ETEPLGTAGPLALARDKL+D++G+PFFVLNSDVI EYP  EMIEFHK +  EASIMVT+V
Sbjct:    61 ETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV 120

Query:   140 DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVF 199
             D+PSKYGVVV EE T +VE FVEKPK FVGNKINAGIYLL+P+VLDRIELR TSIEKE+F
Sbjct:   121 DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVLDRIELRRTSIEKEIF 180

Query:   200 PKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXXXXATGANIVGNVLVHE 259
             PKIA E KL+AMVLPGFWMDIGQP+DYITG                ATG NI+GNVLVHE
Sbjct:   181 PKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLREKTPQELATGDNIIGNVLVHE 240

Query:   260 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 319
             SA IGEGCLIGPDV +GPGCV++SGVRL  CTVMRGV IK+HACIS+SI+GW STVG+WA
Sbjct:   241 SAVIGEGCLIGPDVVIGPGCVIDSGVRLFGCTVMRGVWIKEHACISNSIVGWDSTVGRWA 300

Query:   320 RVENMTILGEDVHVCD-EIYSNGGVVL 345
             RV N+T+LG+DV+V D E+Y N GVV+
Sbjct:   301 RVFNITVLGKDVNVADAEVY-NSGVVI 326

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

DICTYBASE|DDB_G0287619 gmppB "mannose-1-phosphate guanylyltransferase beta" [Dictyostelium discoideum (taxid:44689)]

 Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
 Identities = 222/361 (61%), Positives = 285/361 (78%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGGFGTRLRPLTLS PKP+VEFANK MILHQIEAL  +GV EVVLA+NY+P++M
Sbjct:     1 MKALILVGGFGTRLRPLTLSKPKPIVEFANKAMILHQIEALCKIGVNEVVLAVNYRPQLM 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
               +L+ +E KLGIKI  S ET PLGTAGPLALARD L++D GEPFFVLNSD+I ++PFA+
Sbjct:    61 SQYLEPYEKKLGIKISYSHETVPLGTAGPLALARD-LLND-GEPFFVLNSDIICDFPFAD 118

Query:   121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
             ++ FHK+HGGE +IMVTKV+EPSKYGVVV +E  G++ KFVEKP+++VGNKINAG+Y+ N
Sbjct:   119 LLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIFN 178

Query:   181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 240
             P +LDRI+ +PTSIEKE+FP +A + +L+ M L GFWMD+GQP+D+++G           
Sbjct:   179 PTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSK 238

Query:   241 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
                  ATG  I+G VL+  S+ I  GCLIGP+V +GP CV++ G RL   TV+ G  I K
Sbjct:   239 QPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIGK 298

Query:   301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
             ++ I S+IIGW+S++G+W R+EN ++LGEDVHV DE+Y NGG +LPHK I SSI +PEI+
Sbjct:   299 NSWIKSTIIGWNSSIGKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEII 358

Query:   361 M 361
             M
Sbjct:   359 M 359

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9Y5P6 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Homo sapiens (taxid:9606)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 219/361 (60%), Positives = 277/361 (76%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +V+
Sbjct:     1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119

Query:   121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
             M++FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179

Query:   181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 240
             PAVL RI+L+PTSIEKEVFP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   241 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
                   +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R  RI+ 
Sbjct:   240 QPERLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDARIRS 299

Query:   301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   361 M 361
             M
Sbjct:   360 M 360

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1N7H5 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Bos taurus (taxid:9913)]

 Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
 Identities = 219/361 (60%), Positives = 277/361 (76%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS+PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +V+
Sbjct:     1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E KLGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119

Query:   121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
             M++FH+ HG E SI+VTKV+EPSKYGVVV E  TG+V +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179

Query:   181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 240
             P+VL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   241 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
                   +G  IVGNVLV  SA+IGE C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 HPEQLCSGPGIVGNVLVDPSARIGENCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   361 M 361
             M
Sbjct:   360 M 360

GO:0005739 "mitochondrion" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2R2I6 GMPPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 216/361 (59%), Positives = 276/361 (76%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS+PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +++
Sbjct:     1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119

Query:   121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
             M++FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+LN
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILN 179

Query:   181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 240
             P VL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PTVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   241 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
                   +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 QPEQLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   361 M 361
             M
Sbjct:   360 M 360

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|F1SPR4 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Sus scrofa (taxid:9823)]

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 216/361 (59%), Positives = 277/361 (76%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS+PKPLV+F NKP++LHQ+EAL + GV  V+LA++Y  +++
Sbjct:     1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALASAGVDHVILAVSYMSQML 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T EPFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETAEPFFVLNSDVICDFPFQA 119

Query:   121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
             M++FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179

Query:   181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 240
             PAVL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PAVLQRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   241 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
                   +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 QPEQLCSGPGIVGNVLVDPSARIGKNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   361 M 361
             M
Sbjct:   360 M 360

GO:0005739 "mitochondrion" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:2660880 Gmppb "GDP-mannose pyrophosphorylase B" [Mus musculus (taxid:10090)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 216/361 (59%), Positives = 276/361 (76%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +++
Sbjct:     1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119

Query:   121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
             M++FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179

Query:   181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 240
             PAVL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   241 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
                   +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 HPERLYSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   361 M 361
             M
Sbjct:   360 M 360

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q2YDJ9 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Bos taurus (taxid:9913)]

 Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
 Identities = 217/361 (60%), Positives = 275/361 (76%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS+PKPL +F NKP++LHQ+EAL A GV  V+LA++Y  +V+
Sbjct:     1 MKALILVGGYGTRLRPLTLSIPKPLADFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E KLGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119

Query:   121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
             M++FH+ HG E SI+VTKV+EPSKYGVVV E  TG+V +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179

Query:   181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 240
             P+VL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLKSLRQK 239

Query:   241 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300
                   +G  IVGNVLV   A+IGE C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 HPEQLCSGPGIVGNVLVDPRARIGENCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   361 M 361
             M
Sbjct:   360 M 360

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O93827	MPG1_CANAL	2, ., 7, ., 7, ., 1, 3	0.5647	0.9972	0.9944	N/A	no
Q8H1Q7	GMPP3_ARATH	2, ., 7, ., 7, ., 1, 3	0.7629	0.9085	0.9909	no	no
Q68EY9	GMPBA_XENLA	2, ., 7, ., 7, ., 1, 3	0.6149	0.9972	1.0	N/A	no
O74484	MPG1_SCHPO	2, ., 7, ., 7, ., 1, 3	0.6153	0.9972	0.9917	yes	no
Q4I1Y5	MPG1_GIBZE	2, ., 7, ., 7, ., 1, 3	0.6	0.9972	0.9890	yes	no
Q2YDJ9	GMPPB_BOVIN	2, ., 7, ., 7, ., 1, 3	0.6204	0.9972	1.0	yes	no
Q2UJU5	MPG1_ASPOR	2, ., 7, ., 7, ., 1, 3	0.5890	0.9972	0.9890	yes	no
O74624	MPG1_HYPJE	2, ., 7, ., 7, ., 1, 3	0.5972	0.9972	0.9890	N/A	no
Q7RVR8	MPG1_NEUCR	2, ., 7, ., 7, ., 1, 3	0.6147	0.9944	0.9862	N/A	no
Q9P8N0	MPG1_PICAN	2, ., 7, ., 7, ., 1, 3	0.5917	0.9972	0.9890	N/A	no
A3QMC8	GMPPB_CAEEL	2, ., 7, ., 7, ., 1, 3	0.5558	0.9944	0.9835	yes	no
Q9M2S0	GMPP2_ARATH	2, ., 7, ., 7, ., 1, 3	0.8351	1.0	0.9917	no	no
Q68EQ1	GMPPB_XENTR	2, ., 7, ., 7, ., 1, 3	0.6121	0.9972	1.0	yes	no
Q5B1J4	MPG1_EMENI	2, ., 7, ., 7, ., 1, 3	0.5972	0.9972	0.9890	yes	no
Q6BN12	MPG1_DEBHA	2, ., 7, ., 7, ., 1, 3	0.5509	0.9972	0.9944	yes	no
Q8BTZ7	GMPPB_MOUSE	2, ., 7, ., 7, ., 1, 3	0.6177	0.9972	1.0	yes	no
Q54K39	GMPPB_DICDI	2, ., 7, ., 7, ., 1, 3	0.6343	0.9944	1.0	yes	no
Q7JZB4	GMPPB_DROME	2, ., 7, ., 7, ., 1, 3	0.5972	0.9916	0.9701	yes	no
Q9Y5P6	GMPPB_HUMAN	2, ., 7, ., 7, ., 1, 3	0.6260	0.9972	1.0	yes	no
P0C5I2	GMPPB_PIG	2, ., 7, ., 7, ., 1, 3	0.6177	0.9972	1.0	yes	no
Q6DBU5	GMPPB_DANRE	2, ., 7, ., 7, ., 1, 3	0.5955	0.9972	1.0	yes	no
Q70SJ2	MPG1_KLULA	2, ., 7, ., 7, ., 1, 3	0.5939	0.9972	0.9972	yes	no
Q61S97	GMPPB_CAEBR	2, ., 7, ., 7, ., 1, 3	0.5667	0.9916	0.9835	N/A	no
Q6Z9A3	GMPP3_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8891	1.0	1.0	yes	no
Q9Y725	MPG11_CANGA	2, ., 7, ., 7, ., 1, 3	0.5690	0.9972	0.9972	yes	no
Q6CCU3	MPG1_YARLI	2, ., 7, ., 7, ., 1, 3	0.5945	0.9944	0.9889	yes	no
P0CO20	MPG1_CRYNJ	2, ., 7, ., 7, ., 1, 3	0.5917	0.9972	0.9890	yes	no
P0CO21	MPG1_CRYNB	2, ., 7, ., 7, ., 1, 3	0.5917	0.9972	0.9890	N/A	no
Q4U3E8	MPG1_ASPFU	2, ., 7, ., 7, ., 1, 3	0.5917	0.9972	0.9890	yes	no
P41940	MPG1_YEAST	2, ., 7, ., 7, ., 1, 3	0.6049	0.9972	0.9972	yes	no
O22287	GMPP1_ARATH	2, ., 7, ., 7, ., 1, 3	0.8947	1.0	1.0	yes	no
Q84JH5	GMPP1_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8891	1.0	1.0	no	no
Q295Y7	GMPPB_DROPS	2, ., 7, ., 7, ., 1, 3	0.5944	0.9916	0.9649	yes	no
Q941T9	GMPP2_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8891	1.0	1.0	yes	no
Q752H4	MPG1_ASHGO	2, ., 7, ., 7, ., 1, 3	0.5801	0.9972	0.9972	yes	no
A2VD83	GMPBB_XENLA	2, ., 7, ., 7, ., 1, 3	0.6066	0.9972	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.976
3rd Layer	2.7.7.13	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	1e-165
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	1e-108
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	3e-80
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	1e-66
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	3e-62
cd06428	257	cd06428, M1P_guanylylT_A_like_N, N-terminal domain	3e-61
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	9e-55
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	1e-53
cd06422	221	cd06422, NTP_transferase_like_1, NTP_transferase_l	2e-50
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	2e-48
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	1e-43
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	2e-40
cd02524	253	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr	3e-35
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	5e-30
TIGR02623	254	TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti	4e-29
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	6e-29
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	3e-27
cd02523	229	cd02523, PC_cytidylyltransferase, Phosphocholine c	8e-27
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	5e-25
cd02541	267	cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca	1e-24
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	8e-24
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	1e-23
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	1e-21
cd02538	240	cd02538, G1P_TT_short, G1P_TT_short is the short f	3e-21
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	1e-20
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	3e-19
COG1213	239	COG1213, COG1213, Predicted sugar nucleotidyltrans	5e-19
cd04198	214	cd04198, eIF-2B_gamma_N, The N-terminal domain of	8e-18
COG4750	231	COG4750, LicC, CTP:phosphocholine cytidylyltransfe	9e-17
TIGR01099	260	TIGR01099, galU, UTP-glucose-1-phosphate uridylylt	9e-17
COG1210	291	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell	1e-16
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	1e-16
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	5e-16
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	1e-14
cd04197	217	cd04197, eIF-2B_epsilon_N, The N-terminal domain o	7e-14
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	1e-13
PRK15480	292	PRK15480, PRK15480, glucose-1-phosphate thymidylyl	5e-13
PRK14358	481	PRK14358, glmU, bifunctional N-acetylglucosamine-1	1e-12
PRK10122	297	PRK10122, PRK10122, GalU regulator GalF; Provision	4e-11
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	5e-11
PRK14359	430	PRK14359, glmU, bifunctional N-acetylglucosamine-1	8e-11
TIGR01207	286	TIGR01207, rmlA, glucose-1-phosphate thymidylyltra	1e-10
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	2e-10
TIGR01105	297	TIGR01105, galF, UTP-glucose-1-phosphate uridylylt	3e-10
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	6e-10
cd04183	231	cd04183, GT2_BcE_like, GT2_BcbE_like is likely inv	2e-09
PRK14352	482	PRK14352, glmU, bifunctional N-acetylglucosamine-1	3e-09
cd02509	274	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guan	1e-08
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	1e-08
PRK13389	302	PRK13389, PRK13389, UTP--glucose-1-phosphate uridy	2e-08
pfam12804	178	pfam12804, NTP_transf_3, MobA-like NTP transferase	3e-08
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	3e-08
COG2266	177	COG2266, COG2266, GTP:adenosylcobinamide-phosphate	1e-07
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	2e-07
PRK02862	429	PRK02862, glgC, glucose-1-phosphate adenylyltransf	3e-07
COG0836	333	COG0836, {ManC}, Mannose-1-phosphate guanylyltrans	4e-07
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	5e-07
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	9e-07
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	2e-06
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	3e-06
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	5e-06
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	7e-06
cd04182	186	cd04182, GT_2_like_f, GT_2_like_f is a subfamily o	7e-06
PRK09451	456	PRK09451, glmU, bifunctional N-acetylglucosamine-1	7e-06
PRK00317	193	PRK00317, mobA, molybdopterin-guanine dinucleotide	1e-05
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	1e-05
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	2e-05
cd02503	181	cd02503, MobA, MobA catalyzes the formation of mol	2e-05
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	3e-05
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	3e-05
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	4e-05
cd02508	200	cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory	5e-05
COG0746	192	COG0746, MobA, Molybdopterin-guanine dinucleotide	6e-05
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	2e-04
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	2e-04
TIGR00453	217	TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha	2e-04
COG1211	230	COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith	2e-04
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	4e-04
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	5e-04
PRK00155	227	PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat	5e-04
PLN02241	436	PLN02241, PLN02241, glucose-1-phosphate adenylyltr	5e-04
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	0.001
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	0.001
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	0.001
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	0.002
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	0.002
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	0.002
TIGR02665	186	TIGR02665, molyb_mobA, molybdopterin-guanine dinuc	0.002
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	0.003
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.003
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.003
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	0.003
PRK00725	425	PRK00725, glgC, glucose-1-phosphate adenylyltransf	0.003
PRK14489	366	PRK14489, PRK14489, putative bifunctional molybdop	0.004
PRK05450	245	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cyt	0.004
cd02517	239	cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase ca	0.004

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score =  460 bits (1185), Expect = e-165
 Identities = 173/234 (73%), Positives = 206/234 (88%), Gaps = 1/234 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGG+GTRLRPLTL+VPKPLVEF NKPMI HQIEAL   GV E++LA+NY+PE M
Sbjct: 1   MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           + FLKE+E KLGIKI  S ETEPLGTAGPLALARD L DD  EPFFVLNSDVI ++P AE
Sbjct: 61  VPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAE 119

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           +++FHK HG E +I+VTKV++PSKYGVVV +E+TG++E+FVEKPK+FVGNKINAGIY+LN
Sbjct: 120 LLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILN 179

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 234
           P+VLDRI LRPTSIEKE+FPK+A EG+L+A  LPGFWMDIGQP+D++ G+ LYL
Sbjct: 180 PSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  319 bits (819), Expect = e-108
 Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 21/358 (5%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA+IL GG+GTRLRPLT   PKPL+  A KP+I + +EAL A GV E+VL + Y  E +
Sbjct: 2   MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQI 61

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             +  + E  LG++I    E EPLGTAG L  A D L  D    F VLN DV+++   +E
Sbjct: 62  EEYFGDGE-GLGVRITYVVEKEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSE 117

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG--NKINAGIYL 178
           ++EFHK  G  A+I +T+V +PS++GVV  ++  G+V +F EKP       N INAGIY+
Sbjct: 118 LLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYI 177

Query: 179 LNPAVLDRIEL-RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDS 236
            +P V D IE       E+E+ P +A +G  ++  V  G+W+DIG P D +    L L  
Sbjct: 178 FDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237

Query: 237 L------RKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRC 290
                    +  + +   A I+G V++   A+IG G LIGP   +G G  + +GV +   
Sbjct: 238 DGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNS 297

Query: 291 TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 348
            +M  V I   + I  SIIG +  +G      ++ I   DV +        GVV+   
Sbjct: 298 IIMDNVVIGHGSYIGDSIIGENCKIGA-----SLIIG--DVVIGINSEILPGVVVGPG 348

Length = 358

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score =  244 bits (624), Expect = 3e-80
 Identities = 88/222 (39%), Positives = 133/222 (59%), Gaps = 8/222 (3%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTRLRPLT + PKPL+  A KP++ + IE L   G+ E++L + Y  E +  
Sbjct: 1   AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEE 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
           +  +  +K G+ I    + EPLGTAG +  A D L DD    F V+N DV+++   +E++
Sbjct: 61  YFGD-GSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELL 116

Query: 123 EFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPA 182
            FH+  G +A+I V +V++PS+YGVV +++  G+V +FVEKP L   N  NAGIY+  P 
Sbjct: 117 RFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVEKPTLPESNLANAGIYIFEPE 175

Query: 183 VLDRIELRPTS---IEKEVFPKIALEGKLFAMVLPGFWMDIG 221
           +LD I            +  P +  EGK++   + G+W+DIG
Sbjct: 176 ILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score =  210 bits (536), Expect = 1e-66
 Identities = 79/248 (31%), Positives = 117/248 (47%), Gaps = 14/248 (5%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVM 60
           KA+IL GG GTRL PLT ++ KPLV   +K PMI + +  L   G+ E ++    +   +
Sbjct: 1   KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           +       +K G+++  + + EP GTA  +ALA D L DD  E   VL  D I    F E
Sbjct: 61  VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120

Query: 121 MIEFHKAHG--GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG-NKINAGIY 177
            ++  +A    G  +  +  V++P+ YGV+  +E  G+V +FVEKP L    N  + GIY
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDE-NGRVIRFVEKPDLPKASNYASMGIY 179

Query: 178 LLNPAVLDRI-----EL-RPTSIEKEVFPKIALEGKLF-AMVLPGF--WMDIGQPRDYIT 228
             N  V   +     EL R      +  P    +G L  A +  G+  W D+G       
Sbjct: 180 FFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWE 239

Query: 229 GLRLYLDS 236
                L  
Sbjct: 240 ANLKLLTG 247

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score =  203 bits (520), Expect = 3e-62
 Identities = 108/333 (32%), Positives = 164/333 (49%), Gaps = 34/333 (10%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA+IL  G GTR+RPLT + PKP++  A KP++ H IEAL+  G+ + V  + Y  E +
Sbjct: 1   MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             +  +  ++ G+ I    + E LGTA  L  A++  +DD    F VLN DV+ +    E
Sbjct: 61  REYFGD-GSRGGVPIEYVVQEEQLGTADALGSAKE-YVDD---EFLVLNGDVLLDSDLLE 115

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
                       +I V +VD+PS YGVV  +   G+V   VEKP+    N INAGIYL +
Sbjct: 116 ----RLIRAEAPAIAVVEVDDPSDYGVVETDG--GRVTGIVEKPENPPSNLINAGIYLFS 169

Query: 181 PAVLDRIELRPTSIEKE-----VFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLD 235
           P + + +E    S   E         +  EGK+ A+ L GFW+D+G+P D +      LD
Sbjct: 170 PEIFELLEKTKLSPRGEYELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLD 229

Query: 236 SLRKKSSLKLATGANIVGNVLVHESAQ------------IGEGCLIGPD------VAVGP 277
           +L  +    +     I G V++ E A             IG+ C IGP+        +G 
Sbjct: 230 NLEPRIEGTVEENVTIKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGN 289

Query: 278 GCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 310
              + + V +    +M G +I   + +  S+IG
Sbjct: 290 NVHIGNAVEIKNSIIMEGTKIPHLSYVGDSVIG 322

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

 Score =  196 bits (501), Expect = 3e-61
 Identities = 98/257 (38%), Positives = 137/257 (53%), Gaps = 26/257 (10%)

Query: 3   ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEV 59
           A+ILVGG   GTR RPL+L VPKPL   A KPMI H IEA   V  + EV+L   Y   V
Sbjct: 1   AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60

Query: 60  MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 119
             +F+ + + +  + I   QE +PLGTAG L   RD+++      FFVLN+DV  ++P  
Sbjct: 61  FSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQ 120

Query: 120 EMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 177
           E++EFHK HG   +I+ T+   ++ S YG +V + STG+V  +VEKP+ FV + IN G+Y
Sbjct: 121 ELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVY 180

Query: 178 LLNPAVLDRIEL---------------------RPTSIEKEVFPKIALEGKLFAMVLPGF 216
           L +P + D I+                          +E++V   +A  GKL+      F
Sbjct: 181 LFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF 240

Query: 217 WMDIGQPRDYITGLRLY 233
           W  I      I   RLY
Sbjct: 241 WSQIKTAGSAIYANRLY 257

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score =  178 bits (455), Expect = 9e-55
 Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL GG GTRLR +   +PKPL   A +P + + +E L   G++ +VL++ Y  E +  
Sbjct: 1   AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEE 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
           +  +   + GI+I    E EPLGT G +  A  KL +D    F VLN D   +     ++
Sbjct: 61  YFGD-GYRGGIRIYYVIEPEPLGTGGAIKNALPKLPED---QFLVLNGDTYFDVDLLALL 116

Query: 123 EFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPA 182
              +A G +A++ + +V + S+YG V ++   G+V  FVEK        IN G+YLL   
Sbjct: 117 AALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVEKGPGAAPGLINGGVYLLRKE 175

Query: 183 VLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 226
           +L  I     S+E +V P +   G+L+   + G+++DIG P DY
Sbjct: 176 ILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDY 219

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score =  176 bits (448), Expect = 1e-53
 Identities = 79/230 (34%), Positives = 126/230 (54%), Gaps = 20/230 (8%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            +I+ GG GTRLRPLT + PKP+++   KP++   I+   A G     +++NY  E++ +
Sbjct: 1   VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIED 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
           +  +  +K G+ I   +E +PLGTAG L+L  +K      +PF V+N D+++   +  ++
Sbjct: 61  YFGD-GSKFGVNISYVREDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLL 115

Query: 123 EFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKL-FVGNKINAGIYLLNP 181
           +FHK +  +A++ V + +    YGVV  E   G++    EKP   F    +NAGIY+L P
Sbjct: 116 DFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEEKPTHSF---LVNAGIYVLEP 170

Query: 182 AVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 226
            VLD I        P  IEK     I    K+    +  +W+DIG+P DY
Sbjct: 171 EVLDLIPKNEFFDMPDLIEKL----IKEGKKVGVFPIHEYWLDIGRPEDY 216

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family

 Score =  167 bits (425), Expect = 2e-50
 Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 13/228 (5%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+IL  G GTR+RPLT + PKPLV  A KP+I H ++ L A G+  +V+  ++  + + 
Sbjct: 1   KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIE 60

Query: 62  NFLKEFEAKLGIKIICSQE-TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             L   +++ G++I  S E  E L T G +  A   L D   EPF V+N D++ +   A 
Sbjct: 61  AHLG--DSRFGLRITISDEPDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAP 115

Query: 121 MIEFHKAHGGEASIMVTKVDEPSK--YGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 178
           ++  H        +++  V  P     G   ++   G++ +        V      GI +
Sbjct: 116 LLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDA-DGRLRRGGGG---AVAPFTFTGIQI 171

Query: 179 LNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 226
           L+P +   I     S+   ++ +    G+LF +V  G W D+G P   
Sbjct: 172 LSPELFAGIPPGKFSL-NPLWDRAIAAGRLFGLVYDGLWFDVGTPERL 218

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score =  162 bits (413), Expect = 2e-48
 Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 12/242 (4%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK LIL GG GTRLRPLT + PK L+  A KP+I + IE L+  G+ ++ + +    E +
Sbjct: 1   MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L +  ++ G++I    + EPLG A  +  ARD L D+   PF V   D + +   + 
Sbjct: 61  KEALGD-GSRFGVRITYILQEEPLGLAHAVLAARDFLGDE---PFVVYLGDNLIQEGISP 116

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           ++        +ASI++ +V++P ++GV V+++  G++ + VEKPK    N    G+Y   
Sbjct: 117 LVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFT 174

Query: 181 PAVLDRI-ELRPTSI-EKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITGLRLYL 234
           PA+ D I  L+P+   E E+   I        ++   ++ G+W D G P D +   RL L
Sbjct: 175 PAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234

Query: 235 DS 236
           D 
Sbjct: 235 DK 236

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score =  154 bits (390), Expect = 1e-43
 Identities = 103/340 (30%), Positives = 171/340 (50%), Gaps = 17/340 (5%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVM 60
           KALIL  G GTRLRPLT + PK L+  ANKP++ + IE L   G+T++ + +     E +
Sbjct: 1   KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              + E E + G KI    + EPLG A  +  ARD L DD    F V   D + +   + 
Sbjct: 61  KEIVGEGE-RFGAKITYIVQGEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISR 116

Query: 121 MIE-FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 179
            ++ F +    +A I++TKV +P+ +GV V+E+   ++ K VEKPK    N    G+Y+ 
Sbjct: 117 FVKSFEEKD-YDALILLTKVRDPTAFGVAVLEDG-KRILKLVEKPKEPPSNLAVVGLYMF 174

Query: 180 NPAVLDRIELRPTSIEKEVFPKIALEG------KLFAMVLPGFWMDIGQPRDYITGLRLY 233
            P + + I+    S   E+    A++       K+    + G+W D G+P D +   RL 
Sbjct: 175 RPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLI 234

Query: 234 LDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVM 293
           LD + ++    +   + I G V+V E A+I    + GP   +G  C++E+       ++ 
Sbjct: 235 LDEV-EREVQGVDDESKIRGRVVVGEGAKIVNSVIRGP-AVIGEDCIIENSYIGPYTSIG 292

Query: 294 RGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
            GV I+      S ++      G  AR+ + +++G+ V +
Sbjct: 293 EGVVIRDAEVEHSIVLDESVIEGVQARIVD-SVIGKKVRI 331

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score =  143 bits (364), Expect = 2e-40
 Identities = 84/282 (29%), Positives = 136/282 (48%), Gaps = 23/282 (8%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG GTRLRPLT  VPK L+   +KPMI + +E L   G+ ++++ +  + +  
Sbjct: 1   MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    +  G+ I  + + EP G A  + +A D  + D  + F +   D I +   +E
Sbjct: 61  FKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAED-FVGD--DDFVLYLGDNIFQDGLSE 117

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           ++E     G  A+I++ +VD+PS+YGVV  +E  GKV    EKPK    N    G+Y  +
Sbjct: 118 LLEHFAEEGSGATILLYEVDDPSRYGVVEFDE-DGKVIGLEEKPKEPKSNLAVTGLYFYD 176

Query: 181 PAVLDRIELRPTSIEKEVFPKIALE-----------GKL-FAMVLPGFWMDIGQPRDYIT 228
           P+V + I+    S   E      LE           G L  A+++ G+W+D G P   + 
Sbjct: 177 PSVFEAIKQIKPSARGE------LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLE 230

Query: 229 GLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIG 270
               ++ ++ K+   K+A    I  N  +     IG    + 
Sbjct: 231 ANN-FVRTVSKRQGFKIACPEEIAWNGWIDGPGLIGLASQLE 271

Length = 286

>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

 Score =  128 bits (325), Expect = 3e-35
 Identities = 76/257 (29%), Positives = 116/257 (45%), Gaps = 35/257 (13%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            +IL GG GTRL   T   PKP+VE   +P++ H ++     G  + +L + Y+  V+  
Sbjct: 1   VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKE 60

Query: 63  FLKEFEAKL---------GIKIICSQETEP-------LG----TAGPLALARDKLIDDTG 102
           +   +                 + + + E         G    T G L   R  L DD  
Sbjct: 61  YFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDD-- 118

Query: 103 EPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE 162
           E F +   D +S+     +IEFH++HG  A   VT V  P ++G + +++  G+V  F E
Sbjct: 119 ETFMLTYGDGVSDVNINALIEFHRSHGKLA--TVTAVHPPGRFGELDLDDD-GQVTSFTE 175

Query: 163 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFW--MDI 220
           KP+   G  IN G ++L P V D I+   T  E+E   ++A +G+L A    GFW  MD 
Sbjct: 176 KPQG-DGGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMD- 233

Query: 221 GQPRDYITGLRLYLDSL 237
              RD        L+ L
Sbjct: 234 -TLRDK-----QTLEEL 244

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score =  119 bits (300), Expect = 5e-30
 Identities = 92/362 (25%), Positives = 158/362 (43%), Gaps = 46/362 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           + A+IL  G GTR++     +PK L   A KPM+ H I+A +A+G  ++V+ + +  E +
Sbjct: 3   LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQV 59

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L E +      +    + E LGT   +  A   L DD      VL  DV  I+    
Sbjct: 60  REALAERD-----DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETL 114

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINA 174
            E++  H AHG  A+++  ++D+P+ YG +V + + G+V   VE+     +     +IN 
Sbjct: 115 EELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVTAIVEEKDASEEEKQIKEINT 173

Query: 175 GIYLLNPAVLDR--IELRPTSIEKEVF----PKIALEGKLFAMVLPGFWMDIGQPRDY-- 226
           GIY  + A L R   +L   + + E +      IA         +           D   
Sbjct: 174 GIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAV--------HVDDEEE 225

Query: 227 ITGL--RLYLDSL-----RKKSSLKLATGANIV--GNVLVHESAQIGEGCLIGPDV---- 273
           + G+  R+ L        R+ +   +  G  ++      +    +IG   +I P+V    
Sbjct: 226 VLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEG 285

Query: 274 --AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV 331
              +G   V+  G  +    +     IK ++ I  S +G  +TVG +AR+    +LG DV
Sbjct: 286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADV 345

Query: 332 HV 333
           H+
Sbjct: 346 HI 347

Length = 460

>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase

 Score =  112 bits (282), Expect = 4e-29
 Identities = 78/255 (30%), Positives = 120/255 (47%), Gaps = 38/255 (14%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+IL GG GTR+   T   PKP+VE   KP++ H ++     G+ + ++   Y+  V  
Sbjct: 1   KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYV-- 58

Query: 62  NFLKEFEAKLGIKI-------------ICSQETEPLG-----------TAGPLALARDKL 97
             +KE+ A   + +             +  +  EP             T G L   R+ L
Sbjct: 59  --IKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYL 116

Query: 98  IDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV 157
            D   E F     D +++     +I FH+ HG +A+  VT V  P ++G + +E    +V
Sbjct: 117 DD---EAFCFTYGDGVADIDIKALIAFHRKHGKKAT--VTAVQPPGRFGALDLEG--EQV 169

Query: 158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFW 217
             F EKP L  G  IN G ++LNP+VLD I+   T  E+E    +A  G+L A    GFW
Sbjct: 170 TSFQEKP-LGDGGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFW 228

Query: 218 --MDIGQPRDYITGL 230
             MD  + ++Y+  L
Sbjct: 229 QPMDTLRDKNYLEEL 243

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score =  106 bits (267), Expect = 6e-29
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query: 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 315
           L+  SA+IG+   IGP+V +GP   +  GVRL RC ++    ++ H+ + SSI+GW+STV
Sbjct: 1   LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTV 60

Query: 316 GQWARVENMTILGEDVHVCD 335
           G+W R+EN+T+LG+DV + D
Sbjct: 61  GRWTRLENVTVLGDDVTIKD 80

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score =  111 bits (279), Expect = 3e-27
 Identities = 92/366 (25%), Positives = 154/366 (42%), Gaps = 59/366 (16%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +  +IL  G GTR++     +PK L   A KPM+ H I+A +A+G  ++ +   +  E +
Sbjct: 1   LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L          +    + E LGT   +  A   L DD      VL  DV  IS    
Sbjct: 58  RKALAN------RDVNWVLQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETL 109

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINA 174
             ++E H+ +G   +++  K+ +P+ YG ++ E   GKV   VE      +     +IN 
Sbjct: 110 ERLLEAHRQNG--ITLLTAKLPDPTGYGRIIREND-GKVTAIVEDKDANAEQKAIKEINT 166

Query: 175 GIYLLNPAVLDRI--ELRPTSIEKEVFPK--IALEGKLFAMVLPGFWMDIGQPRDY--IT 228
           G+Y+ + A L R   +L   + + E +    IAL       V  G  +   Q  D   + 
Sbjct: 167 GVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIAL------AVADGETVRAVQVDDSDEVL 220

Query: 229 GL----------RLYLDSLRKK-----------SSLKLATGANIVGNVLVHESAQIGEGC 267
           G+          R+    + KK           +   +     I  +V +  +  +    
Sbjct: 221 GVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKV 280

Query: 268 LIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTIL 327
            IG DV +GPGCV+++        +   V IK ++ +  S IG    VG +AR+   ++L
Sbjct: 281 KIGDDVVIGPGCVIKN------SVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVL 334

Query: 328 GEDVHV 333
           G  VH+
Sbjct: 335 GAGVHI 340

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

 Score =  105 bits (265), Expect = 8e-27
 Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 25/237 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G G+RLRPLT   PK L+E   KP++  QIE LK  G+ ++V+   Y+ E +  
Sbjct: 1   AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
            LK++     IK + + +         L LARD L     E F +L  DV+ +     ++
Sbjct: 61  LLKKY---PNIKFVYNPDYAETNNIYSLYLARDFL----DEDFLLLEGDVVFDP---SIL 110

Query: 123 EFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA---GIYLL 179
           E   +   + +I+V K  +  +   V   +  G +   + K K     +I     GI   
Sbjct: 111 ERLLSSPADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAK--NLEEIQGEYVGISKF 168

Query: 180 NPAVLDRI-----ELRPTSIEK----EVFPKIALEGKLFAMVLP-GFWMDIGQPRDY 226
           +P   DR+     EL           +   ++  E  +    +  GFW +I    D 
Sbjct: 169 SPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISDGFWYEIDDLEDL 225

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score =  104 bits (261), Expect = 5e-25
 Identities = 95/394 (24%), Positives = 167/394 (42%), Gaps = 55/394 (13%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVML 61
           A+IL GG G+RL PLT    KP V F  K  +I   +      G+  + +   Y+   + 
Sbjct: 8   AIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLN 67

Query: 62  NFL---KEF---EAKLGIKIICSQETEPL-----GTAGPLALARD-KLIDDTGEPFFV-L 108
           + +     +       G+ I+ +Q+ E       GTA   A+ ++  +I  +   + + L
Sbjct: 68  DHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTA--DAIYQNLLIIRRSDPEYVLIL 125

Query: 109 NSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKFVEKPKL 166
           + D I +  +++M++FH   G + ++ V +V   E S++GV+ ++E+ G++ +FVEKP  
Sbjct: 126 SGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDEN-GRIIEFVEKPAD 184

Query: 167 --FVGNKINAGIYLLNPAVLDRIEL------RPTS---IEKEVFPKIALEGKLFAMVLPG 215
                +  + GIY+ N  +L   EL       P S     K++ PK+   GK++A    G
Sbjct: 185 GPPSNSLASMGIYIFNTDLL--KELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSG 242

Query: 216 FWMDIGQPRDYIT----------GLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGE 265
           +W D+G    Y             L LY  +    +  K    A  V +  V  S  +  
Sbjct: 243 YWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNS-LVAG 301

Query: 266 GCLIGPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 322
           GC+I   V    +  G  +  G  +    +M  V I + A +  +II  +        + 
Sbjct: 302 GCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN------VVIG 355

Query: 323 NMTILGEDVHVCDE---IYSNGGVVLPHKEIKSS 353
              ++G D    D        G VV+P   +   
Sbjct: 356 EGVVIGGDKPEEDRKRFRSEEGIVVVPKGMVIKL 389

Length = 393

>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose

 Score =  100 bits (252), Expect = 1e-24
 Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 39/262 (14%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            KA+I   G GTR  P T ++PK ++   +KP+I + +E   A G+ ++++        +
Sbjct: 1   RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60

Query: 61  LNFL---KEFEAKL-----------------GIKIICSQETEPLGTAGPLALARDKLIDD 100
            +      E E  L                    I   ++ EPLG    +  A+   I D
Sbjct: 61  EDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKP-FIGD 119

Query: 101 TGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMVTKVDEP--SKYGVVVMEESTG 155
             EPF VL  D +  S+ P   ++IE ++  G  + I V +V     SKYG+V  E+  G
Sbjct: 120 --EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA-SVIAVEEVPPEDVSKYGIVKGEKIDG 176

Query: 156 ---KVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRPTSIEKEV-----FPKIALE 205
              KV+  VEKPK      N    G Y+L P + D +E        E+       K+  E
Sbjct: 177 DVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEE 236

Query: 206 GKLFAMVLPGFWMDIGQPRDYI 227
             ++A V  G   D G    Y+
Sbjct: 237 EPVYAYVFEGKRYDCGNKLGYL 258

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score = 97.3 bits (243), Expect = 8e-24
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 44/222 (19%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEV-VLAINYQPEV 59
            +A++L  GFG+R  PLT  +PK L+  AN P+I + +E L+  GV EV V+   +   +
Sbjct: 1   FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60

Query: 60  MLNFLKEFEAKLGIK----IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE 115
           + + LK   + L  K    +I S   E  G A  L   R  +  D    F +L+ D++S 
Sbjct: 61  IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSD----FLLLSCDLVSN 116

Query: 116 YPFAEMIE----FHKAHGGEASIMVTKVDEPS---------KYGVVVMEESTGKV----- 157
            P +E++E      K     A++ V     P          +  V+ ++  T ++     
Sbjct: 117 IPLSELLEERRKKDKNA--IATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHY 174

Query: 158 EKFVEKPKLFVGNK---------------INAGIYLLNPAVL 184
           E+ +++    +  K               ++  IY+ +P VL
Sbjct: 175 EEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 97.2 bits (243), Expect = 1e-23
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 27/195 (13%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L   A KPM+ H ++A +A+G   +V+ + +  E    
Sbjct: 1   AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQ--- 54

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            +K+  A   ++ +  QE E LGT   +  A   L D  G+   VL  DV  I+      
Sbjct: 55  -VKKALANPNVEFV-LQE-EQLGTGHAVKQALPALKDFEGD-VLVLYGDVPLITPETLQR 110

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE---------KPKLFVGNK 171
           ++E H+  G + +++  ++++P+ YG ++ + + GKV + VE           +      
Sbjct: 111 LLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRIVEEKDATEEEKAIRE----- 164

Query: 172 INAGIYLLNPAVLDR 186
           +NAGIY  +   L  
Sbjct: 165 VNAGIYAFDAEFLFE 179

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 95.3 bits (238), Expect = 1e-21
 Identities = 94/383 (24%), Positives = 168/383 (43%), Gaps = 61/383 (15%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L +   KPM+ H ++++K  G+ ++V  + +  E    
Sbjct: 5   AIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAE---- 57

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
              E +  LG +   + + E LGT   +  A + L D  G    V+  D   I+      
Sbjct: 58  ---EVKEVLGDRSEFALQEEQLGTGHAVMQAEEFLADKEGT-TLVICGDTPLITAETLKN 113

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGI 176
           +I+FH+ H   A+I+    + P+ YG ++  E+ G+VEK VE      +     +IN G 
Sbjct: 114 LIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVEKIVEQKDATEEEKQIKEINTGT 172

Query: 177 YLLNPAVLDRI--ELRPTSIEKEVFPKIALE------GKLFAMVLPGFWMDIGQPRDYIT 228
           Y  +   L     ++   + + E +    +E       K+ A     F        +   
Sbjct: 173 YCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDF--------EESL 224

Query: 229 GL--RLYL----DSLRKKSSLK-LATGANIVG--NVLVHESAQIGE------GCLIGPDV 273
           G+  R+ L      +R++ + K +  G  I+   +  +    +IG       G +I  + 
Sbjct: 225 GVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNT 284

Query: 274 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
            +G  CV+  G R+   T+  GV I  ++ I  S +G + TVG +A +   +++GE+V +
Sbjct: 285 VIGEDCVIGPGSRIVDSTIGDGVTI-TNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKI 343

Query: 334 CDEIYSNGGVVLPHKEIKSSILK 356
                  G  V    EIK S + 
Sbjct: 344 -------GNFV----EIKKSTIG 355

Length = 458

>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

 Score = 90.7 bits (226), Expect = 3e-21
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 24/241 (9%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG GTRL PLT  V K L+   +KPMI + +  L   G+ E+++     PE +
Sbjct: 1   MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIIST--PEDL 58

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE-YP 117
             F +     + LGI+I  + + +P G A    +  + + DD   P  ++  D I     
Sbjct: 59  PLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQG 115

Query: 118 FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 177
            + +++   A    A++   +V++P +YGVV  +E+ G+V    EKPK    N    G+Y
Sbjct: 116 LSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVLSIEEKPKKPKSNYAVTGLY 174

Query: 178 LLNPAVLDRI---------ELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDY 226
             +  V +           EL  T +  E   K    GKL   +L     W+D G     
Sbjct: 175 FYDNDVFEIAKQLKPSARGELEITDVNNEYLEK----GKLSVELLGRGFAWLDTGTHESL 230

Query: 227 I 227
           +
Sbjct: 231 L 231

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 86/373 (23%), Positives = 156/373 (41%), Gaps = 64/373 (17%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-----HQIEALKAVGVTEVVLAINYQP 57
           A++L GG G+RL PLT    KP V F  K  I+     + I +    G+  + +   Y+ 
Sbjct: 1   AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS----GIRRIGVLTQYKS 56

Query: 58  EV----------MLNFLKEFEAKLGIKIICSQETEP-----LGTAGPLALARD-KLIDDT 101
                          F+  F     + ++ +Q+ E       GTA   A+ ++  LI+D 
Sbjct: 57  HSLNRHIQRGWDFDGFIDGF-----VTLLPAQQRESGTDWYQGTAD--AVYQNLDLIEDY 109

Query: 102 G-EPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVE 158
             E   +L+ D I +  + +M+++H   G + +I    V   E S++GV+ ++E  G++ 
Sbjct: 110 DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDE-DGRIV 168

Query: 159 KFVEKPKLFVGNKINA-------GIYLLNPAVL-----DRIELRPTSIE--KEVFPKIAL 204
            F EKP                 GIY+ +  VL     +  +   +S +  K++ P+   
Sbjct: 169 DFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALE 228

Query: 205 EGKLFAMVLPGFWMDIGQPRDY----------ITGLRLYLDSLRKKSSLKLATGANIVGN 254
           EG + A +  G+W D+G    +          +    LY       +  +    A  V +
Sbjct: 229 EGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDS 288

Query: 255 VLVHESAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 310
                 + + EGC+I G  V+   +G    + SG  +    +M  V I + A I ++II 
Sbjct: 289 DAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIID 348

Query: 311 WHSTVGQWARVEN 323
            +  +G+   + N
Sbjct: 349 KNVRIGEGVVIGN 361

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 88.3 bits (219), Expect = 3e-19
 Identities = 85/358 (23%), Positives = 152/358 (42%), Gaps = 43/358 (12%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     + K +   A +PM+   + A +  G   +VL + +Q E +  
Sbjct: 6   AIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVR- 61

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
             + F     +    + + E LGT   +A A   L   +G    +L  DV  +       
Sbjct: 62  --EHFAGDGDVS--FALQEEQLGTGHAVACAAPALDGFSGT-VLILCGDVPLLRAETLQG 116

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGI 176
           M+  H+A G   +++  +++ P  YG +V  ++ G+V + VE+    P+     ++N+GI
Sbjct: 117 MLAAHRATGAAVTVLTARLENPFGYGRIV-RDADGRVLRIVEEKDATPEERSIREVNSGI 175

Query: 177 YLLNPAVL-DRI-ELRPTSIEKEVF----PKIALEGKLFAMVLPGFWMDIGQPRDYITGL 230
           Y +  A L D I  L   + + E +      +A    L  +  P     +  P + I G+
Sbjct: 176 YCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFP-----VADPDE-IMGV 229

Query: 231 --RLYLDS----LRKKSSLKLA-TGANIV--GNVLVHESAQIGEGCLIGPDVA------V 275
             R  L      LR++ + +L   G  ++      +     IG    I P V       +
Sbjct: 230 NDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRI 289

Query: 276 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
           G GC +E GV +  C +   V +K  + +  S++G    +G  A +   T L   V +
Sbjct: 290 GEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKI 347

Length = 459

>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 84.7 bits (210), Expect = 5e-19
 Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 24/240 (10%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTE-VVLAINYQPEV 59
           MKA+IL  GFG+RL P    +PK LVE   + +I   IE L   G+TE VV+   Y+ ++
Sbjct: 4   MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60

Query: 60  MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 119
           +  FLK++      KI+ + + E   T   L LA+D +       F ++ SD + E    
Sbjct: 61  VEEFLKKY--PFNAKIVINSDYEKTNTGYSLLLAKDYMDGR----FILVMSDHVYEPSIL 114

Query: 120 EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 179
           E +   +A G    +         +     +++  G++ +  +    + G  I  GI++L
Sbjct: 115 ERL--LEAPGEGLIVDRRPRYVGVE-EATKVKDEGGRIVEIGKDLTEYDGEDI--GIFIL 169

Query: 180 NPAVLDRIELRPTSIEKEVFPKIALE-------GKLFAMVLPGFWMDIGQPRDYITGLRL 232
           + ++ +  +     +E+  +    +E        ++   V   FWM++  P D     + 
Sbjct: 170 SDSIFE--DTYELLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKY 227

Length = 239

>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 80.8 bits (200), Expect = 8e-18
 Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 9/148 (6%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTE--VVLAINYQPE 58
            +A+IL GG G+RL PLT ++PK L+  ANKPMI + ++ L+  G  +  VV+    Q E
Sbjct: 1   FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAE 60

Query: 59  VMLNFLKEF--EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY 116
           +   +L+ F    K  +  +     E +GTA  L   R K+  D    F VL+ D+I++ 
Sbjct: 61  IST-YLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIKKD----FLVLSCDLITDL 115

Query: 117 PFAEMIEFHKAHGGEASIMVTKVDEPSK 144
           P  E+++ H++H    ++++      S+
Sbjct: 116 PLIELVDLHRSHDASLTVLLYPPPVSSE 143

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214

>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

 Score = 78.3 bits (193), Expect = 9e-17
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M A+IL  G G+R  PLT S PK L++   +P+I  QIE L+  G+ ++ + + Y  E  
Sbjct: 1   MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKE-Q 59

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV 112
             +LK+   K  + ++ + +         L LARD L +      ++++SD 
Sbjct: 60  FEYLKD---KYDVTLVYNPKYREYNNIYSLYLARDFLNNT-----YIIDSDN 103

Length = 231

>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase

 Score = 78.9 bits (195), Expect = 9e-17
 Identities = 71/263 (26%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVL-------AI 53
            KA+I   G GTR  P T ++PK ++   +KP+I + +E     G+ ++++       +I
Sbjct: 1   RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60

Query: 54  ------NYQPEVML------NFLKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLIDD 100
                 +Y+ E  L        LKE  + +    I   ++ E  G    +  A    + D
Sbjct: 61  EDHFDTSYELEHQLEKTNKEELLKEVRSIIPLATIFYVRQKEQKGLGHAVLCAE-PFVGD 119

Query: 101 TGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMVTKV--DEPSKYGVV---VMEE 152
             EPF V+  D I  SE P   +MI+ ++ +G    I V +V  +E SKYGV+    +EE
Sbjct: 120 --EPFAVILGDDICVSEEPVLKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEE 176

Query: 153 STGKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRPTSIEKEV-----FPKIALE 205
              +++  VEKPK      N    G Y+L P + + +E  P     E+       K+  +
Sbjct: 177 GVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELLEETPPGKGGEIQLTDALRKLLKK 236

Query: 206 GKLFAMVLPGFWMDIGQPRDYIT 228
            +++A    G   D G    YI 
Sbjct: 237 ERVYAYKFKGKRYDCGSKLGYIK 259

Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260

>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 78/272 (28%), Positives = 118/272 (43%), Gaps = 58/272 (21%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVL-------AI 53
            KA+I   G GTR  P T ++PK ++   +KP+I + +E   A G+ E+++       AI
Sbjct: 5   RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAI 64

Query: 54  ------NYQPEVML------NFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLIDD 100
                 +Y+ E  L        L+E  +    + I   ++ EPLG    +  A+   + D
Sbjct: 65  EDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKP-FVGD 123

Query: 101 TGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMVTKV--DEPSKYGVV----VME 151
             EPF VL  D +  SE P   +MIE ++  GG   I V +V  ++ SKYGV+     +E
Sbjct: 124 --EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVE 180

Query: 152 ESTGKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRP--------------TSIE 195
           +   KV+  VEKPK      N    G Y+L P + D +E                   ++
Sbjct: 181 KGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLK 240

Query: 196 KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYI 227
           KE       EGK +         D G    YI
Sbjct: 241 KEPVLAYVFEGKRY---------DCGSKLGYI 263

Length = 291

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 315
           L+ ES  IGE  +I   V +G    +  GV ++   +M  V I  ++ I  SIIG ++ +
Sbjct: 1   LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59

Query: 316 GQWARVENMTILGEDVHV 333
           G+  RV N+ I+G+DV V
Sbjct: 60  GENVRVVNLCIIGDDVVV 77

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 78.7 bits (194), Expect = 5e-16
 Identities = 93/360 (25%), Positives = 160/360 (44%), Gaps = 54/360 (15%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M+AL+L  G GTR++     +PK L + + KPMI   I+  K V   +V + + ++ E++
Sbjct: 1   MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELV 56

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L E      +KI    + E LGTA  +  ARD +  + G+   +L  DV  ISE   
Sbjct: 57  KKLLPE-----WVKIF--LQEEQLGTAHAVMCARDFI--EPGDDLLILYGDVPLISENTL 107

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK---PKLFVGNKINAG 175
             +IE H   G + +I+V  +++P+ YG ++ +   GK     +K    +     +IN G
Sbjct: 108 KRLIEEHNRKGADVTILVADLEDPTGYGRIIRDG--GKYRIVEDKDAPEEEKKIKEINTG 165

Query: 176 IYLLNPAVLDRIELRPTSIEKEVFPKIA---LEGKLFAMVLPGFWMDIGQPR----DYIT 228
           IY+ +   L            EV PKI     +G+ +      F   +   +      IT
Sbjct: 166 IYVFSGDFL-----------LEVLPKIKNENAKGEYYLTDAVNFAEKVRVVKTEDLLEIT 214

Query: 229 GL--RLYLDSLRKKSSLK-----LATGANIV--GNVLVHESAQIGEGCLIGP------DV 273
           G+  R+ L  L K+  ++     +  G  I+      +H   +IG   +I P        
Sbjct: 215 GVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKT 274

Query: 274 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
            +G  C +    R+  C +   V+I +  C   S+I    +VG ++R+   T+L + V +
Sbjct: 275 RIGEDCEIGPMTRIVDCEIGNNVKIIRSEC-EKSVIEDDVSVGPFSRLREGTVLKKSVKI 333

Length = 448

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 69/282 (24%), Positives = 118/282 (41%), Gaps = 60/282 (21%)

Query: 107 VLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFVEKP 164
           +L+ D I +  + +M+++HK    + +I V +V  +E S++G++  +E   ++ +F EKP
Sbjct: 122 ILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDE-NMRIVEFEEKP 180

Query: 165 KLFVGNKINAGIYLLN----PAVLDRIELRPTSIE---KEVFPKIALEG-KLFAMVLPGF 216
           K    N  + GIY+ N       L   E  P S     K V P    EG KL+A    G+
Sbjct: 181 KNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGY 240

Query: 217 WMDIGQPRDYITGLRLYLDSLRKKSSLKL-------------------ATGANIVGNVLV 257
           W D+G            ++ LR ++ L L                   A  A +  N LV
Sbjct: 241 WKDVGTIESL---WEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK-NSLV 296

Query: 258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQ 317
            E                  GCVV   V  S   + +GV++ + + +  S+I   + +G+
Sbjct: 297 VE------------------GCVVYGTVEHS--VLFQGVQVGEGSVVKDSVIMPGAKIGE 336

Query: 318 WARVENMTILGEDVHVCDEIYSNGG-----VVLPHKEIKSSI 354
              +E   I+GE+  + D +   GG     V+  ++ I    
Sbjct: 337 NVVIER-AIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGT 377

Length = 380

>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 47/222 (21%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEV-VLAINYQPEVM- 60
           A++L   F  R RPLT   P+ L+  AN P+I + +E L   GV EV V   ++  ++  
Sbjct: 3   AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKE 62

Query: 61  -LNFLKEFEAKLG---IKIICSQETEPLGTAGPLALARDKLIDDTG---EPFFVLNSDVI 113
            +   K  + K     + II S++   LG A      RD  +D  G     F +++ DV+
Sbjct: 63  YIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA-----LRD--LDAKGLIRGDFILVSGDVV 115

Query: 114 SEYPFAEMIEFH----KAHGGEASIMVTK---VDEPSKYG----VVVMEESTGKV----- 157
           S     E++E H    K        MV K       ++      V+ ++  T ++     
Sbjct: 116 SNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEE 175

Query: 158 ------EKFVEKPKLFVG---------NKINAGIYLLNPAVL 184
                     + P   +G         + ++  I + +P VL
Sbjct: 176 LPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 84/358 (23%), Positives = 140/358 (39%), Gaps = 44/358 (12%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           ALIL  G GTR+       PK L     +PM+     AL+ +    V   + ++ +++  
Sbjct: 8   ALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRA 64

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 120
              + +A+        QE + LGT   L  A   L     +   V+N D  +++     +
Sbjct: 65  AFPDEDAR-----FVLQE-QQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDD 118

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLF--VGNKINA 174
            ++  +A G + + M   + +P  YG VV     G V   VE       L      ++NA
Sbjct: 119 FLK--EAAGADLAFMTLTLPDPGAYGRVVRRN--GHVAAIVEAKDYDEALHGPETGEVNA 174

Query: 175 GIYLLNPAV----LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGL 230
           GIY L        L R+     S E  +   + L       VL    ++ G+  + + G+
Sbjct: 175 GIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLG---VNCGEDPNLL-GV 230

Query: 231 RLYLDSLRKKSSLKLATGAN-IVGNVLVH--ESAQIGEGCLIGPDVAV-GP--------- 277
               + +R +  L+       +   VL+H  ES +IG    I P   + GP         
Sbjct: 231 NTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRI 290

Query: 278 --GCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
             G V+ S   L    V  G  I   + +  + +G   +VG +AR+    +L E   V
Sbjct: 291 ARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARV 348

Length = 456

>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional

 Score = 68.2 bits (166), Expect = 5e-13
 Identities = 61/252 (24%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64

Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122

Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAISLEEKPLQPKSNYAVTGLYFYDN 181

Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYITGLRLYL 234
            V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I     ++
Sbjct: 182 DVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN-FI 240

Query: 235 DSLRKKSSLKLA 246
            ++ ++  LK++
Sbjct: 241 ATIEERQGLKVS 252

Length = 292

>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 68.9 bits (168), Expect = 1e-12
 Identities = 80/356 (22%), Positives = 150/356 (42%), Gaps = 37/356 (10%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +  +IL  G GTR++    ++PK L   A +PM+   ++A + +G  ++V+   +  E  
Sbjct: 8   LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAE-- 62

Query: 61  LNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYP 117
                + EA L G  +  +++ + LGT          L  +      VL  D  ++    
Sbjct: 63  -----QVEAALQGSGVAFARQEQQLGTGDAFLSGASAL-TEGDADILVLYGDTPLLRPDT 116

Query: 118 FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----IN 173
              ++  H+A G   +I+  ++ + + YG +V     G VE+ VE+       K     N
Sbjct: 117 LRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVERIVEQKDATDAEKAIGEFN 175

Query: 174 AGIYLLN---PAVLDRI-------ELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQP 223
           +G+Y+ +   P +  RI       E   T +   ++     + + F +  P   +     
Sbjct: 176 SGVYVFDARAPELARRIGNDNKAGEYYLTDL-LGLYRAGGAQVRAFKLSDPDEVLG-AND 233

Query: 224 RDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVES 283
           R  +  L   L     ++ +K        G +L+ ++  +G    I P V +     V  
Sbjct: 234 RAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVAD 293

Query: 284 GVRLSRCTVM------RGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
           GV +   +V+       G  IK H+ +  + +G  S VG +AR+   T+LGE VH+
Sbjct: 294 GVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHI 349

Length = 481

>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional

 Score = 62.6 bits (152), Expect = 4e-11
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 38/199 (19%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+I V G G  + P T ++PK ++   +KPMI + ++ + A G+ E+VL  +     +
Sbjct: 4   LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63

Query: 61  LNFLK---EFEAKL------------------GIKIICSQETEPLGTAGPLALARDKLID 99
            N      E E+ L                  G+ I+  ++ +PLG    +  AR  + D
Sbjct: 64  ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD 123

Query: 100 DTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 151
               PF V+  DV+ +        Y  A MI      G    +      + S+Y V+  +
Sbjct: 124 ---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTK 180

Query: 152 E---STGKVEK---FVEKP 164
           E     GKV +   F+EKP
Sbjct: 181 EPLDREGKVSRIVEFIEKP 199

Length = 297

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 263 IGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 322
           I  G ++     +G  CV+     +   T+  GV IK  + I  ++IG  +TVG +A + 
Sbjct: 24  IDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLR 83

Query: 323 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSIL 355
             T+LGE VH+       G  V    EIK S +
Sbjct: 84  PGTVLGEGVHI-------GNFV----EIKKSTI 105

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 31/194 (15%)

Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQI-EALKAVGVTEVVLAINYQPEVMLN 62
           +IL  G GTR++    S+PK L     KPM+ + + EA        VVL  ++Q E +  
Sbjct: 6   IILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVL--HHQKERIKE 60

Query: 63  FLKE-FEAKLGIKIICSQETEPL-GTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
            + E F    G+    +Q+ E   GT G L       I+   E   +LN D+    P  E
Sbjct: 61  AVLEYFP---GVIFH-TQDLENYPGTGGAL-----MGIEPKHERVLILNGDM----PLVE 107

Query: 121 MIEFHKAHGGEASIM--VTKVDEPSKYGVVVMEESTGKVEKFVE-----KPKLFVGNKIN 173
             E  K    +A I+  V  + +P  YG VV+E   G+V+K VE     + +L +   +N
Sbjct: 108 KDELEKLLENDADIVMSVFHLADPKGYGRVVIEN--GQVKKIVEQKDANEEELKI-KSVN 164

Query: 174 AGIYLLNPAVLDRI 187
           AG+YL +  +L+  
Sbjct: 165 AGVYLFDRKLLEEY 178

Length = 430

>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 63/256 (24%), Positives = 116/256 (45%), Gaps = 19/256 (7%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T +V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 1   KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 60

Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +  + +  P G A    +  D +  D      VL  ++   +  +++
Sbjct: 61  QQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGGDPSA--LVLGDNIFYGHDLSDL 118

Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           ++   A    A++   +V +P +YGVV  + + G+     EKP     N    G+Y  + 
Sbjct: 119 LKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAISIEEKPAQPKSNYAVTGLYFYDN 177

Query: 182 AVLD---------RIELRPTSIEKEVFPKIALEGKLFAMVLP-GF-WMDIGQPRDYITGL 230
            V++         R EL  T + +        EG+L   +L  G+ W+D G   D +   
Sbjct: 178 RVVEIARQLKPSARGELEITDLNRVYLE----EGRLSVELLGRGYAWLDTGT-HDSLLEA 232

Query: 231 RLYLDSLRKKSSLKLA 246
             ++ ++ K+  LK+A
Sbjct: 233 SNFIQTIEKRQGLKVA 248

Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 315
           LV E+ Q+GE   I   V +G  C +   V+++ C +M  V I+    + + IIG  + +
Sbjct: 1   LVGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVI 59

Query: 316 GQWARVEN 323
           G+  ++++
Sbjct: 60  GEKCKLKD 67

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 58/282 (20%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLA-------- 52
           +KA+I V G G  + P T ++PK ++   +KPMI + ++ + A G+ E+VL         
Sbjct: 4   LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63

Query: 53  -----INYQPEVML------NFLKEFEA--KLGIKIICSQETEPLGTAGPLALARDKLID 99
                 +Y+ E +L        L E ++    G+ I+  ++ +PLG    +  AR  + D
Sbjct: 64  ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD 123

Query: 100 DTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 151
           +   PF V+  D+I +        Y  A MI      G    +      + S+Y V+  +
Sbjct: 124 N---PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTK 180

Query: 152 E---STGKVEKFVE------KPKLFVGNKINAGIYLLN-----------PAVLDRIELRP 191
           E     GKV + VE      +P+    + +  G Y+L+           P    RI+L  
Sbjct: 181 EPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQL-- 238

Query: 192 TSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 233
                +   ++A +  + AM++ G   D G+   Y+     Y
Sbjct: 239 ----TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose [Regulatory functions, Protein interactions]. Length = 297

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++    S+PK L   A +PM+ H + A  ++G + V + +    E +  
Sbjct: 8   AIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAA 64

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
              +         I  Q+ E LGTA  +  AR+ L    G+   VL  D   I+    A 
Sbjct: 65  AAAKIAPDA---EIFVQK-ERLGTAHAVLAAREALAGGYGD-VLVLYGDTPLITAETLAR 119

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE 162
           + E   A G +  ++  +  +P+ YG ++++   G++   VE
Sbjct: 120 LRE-RLADGADVVVLGFRAADPTGYGRLIVKG--GRLVAIVE 158

Length = 446

>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           +I + G G+R +    + PKPL+E   KPMI   IE+L  +  +  +             
Sbjct: 2   IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICR-DEHNTKFH 60

Query: 64  LKEFEAKLGI---KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           L E   KL      ++     E LG A  + LA D + +D   P  + N D I E     
Sbjct: 61  LDE-SLKLLAPNATVVELDG-ETLGAACTVLLAADLIDNDD--PLLIFNCDQIVESDLLA 116

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 177
            +   +    +  ++      P ++  V ++E+ G+V +  EK    + +   AG+Y
Sbjct: 117 FLAAFRERDLDGGVLTFFSSHP-RWSYVKLDEN-GRVIETAEKEP--ISDLATAGLY 169

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231

>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 84/359 (23%), Positives = 149/359 (41%), Gaps = 50/359 (13%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            ++L  G GTR+R  T   PK L   A + M+ H + A   +    +V+ + +  E +  
Sbjct: 7   VIVLAAGAGTRMRSDT---PKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAP 63

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            + E   ++ I +   Q+ E  GT   +  A + L  D      V   DV  +     A+
Sbjct: 64  AVAELAPEVDIAV---QD-EQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLAD 119

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGI 176
           ++  H A G   +++ T +D+P+ YG ++  +  G+V   VE+    P      ++N+G+
Sbjct: 120 LVATHTAEGNAVTVLTTTLDDPTGYGRIL-RDQDGEVTAIVEQKDATPSQRAIREVNSGV 178

Query: 177 YLLNPAVL-DRI-ELRPTSIEKEVFPKIALE------GKLFAMVLPGFWMDIGQPRDYIT 228
           Y  + AVL   +  L   + + E++    L        ++ A                + 
Sbjct: 179 YAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAE--------VA 230

Query: 229 GL--RLYLDSLRKKSSLKLATGANIVGNVLVHESAQ--IGEGCLIGPDVAVGPG------ 278
           G+  R+ L +L  + + ++       G V + + A   I     IG DV + PG      
Sbjct: 231 GVNDRVQLAALGAELNRRIVEAWMRAG-VTIVDPATTWIDVDVTIGRDVVIHPGTQLLGR 289

Query: 279 ------CVVESGVRLSRCTVMRGVR-IKKHACISSSIIGWHSTVGQWARVENMTILGED 330
                  VV     L+  TV  G   ++ H   S S IG  +TVG +  +   T+LGE+
Sbjct: 290 TTIGEDAVVGPDTTLTDVTVGEGASVVRTHG--SESEIGAGATVGPFTYLRPGTVLGEE 346

Length = 482

>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 43/219 (19%)

Query: 1   MKALILVGGFGTRLRPL-TLSVPKPLVE-FANKPMILHQIEALKAVGVTE---VVLAINY 55
           +  +IL GG GTRL PL   S PK  ++ F +K ++   ++ LK +   +   VV    Y
Sbjct: 1   IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEY 60

Query: 56  QPEVMLNFLKEFEAKL-GIKIICSQETEPLG--TAGPLALA-RDKLIDDTGEPFFVLNSD 111
           +  V     ++    L    II     EP G  TA  +ALA       D      VL SD
Sbjct: 61  RFLV----REQLPEGLPEENII----LEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSD 112

Query: 112 -VISEYP-FAEMIEFHKAHGGEASIM---VT---KVDEPS-KYGVVVMEESTG----KVE 158
            +I +   F + ++       EA+     VT   K   P   YG +   E  G    +V+
Sbjct: 113 HLIEDVEAFLKAVK----KAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRVK 168

Query: 159 KFVEKPKL-----FV--GNKI-NAGIYLLNPAV-LDRIE 188
           +FVEKP L     ++  GN + N+GI+L      L+ ++
Sbjct: 169 RFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELK 207

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. Length = 274

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 15/109 (13%)

Query: 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 300
           S K+    +I  N ++ E   IG+G +IGP V +G G V+     +    T+  G  I  
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 301 HACI--SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 340
              I  S ++IG     +    G W ++  +   I+G+DV    EI +N
Sbjct: 61  R-VIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDV----EIGAN 104

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 69/235 (29%), Positives = 99/235 (42%), Gaps = 43/235 (18%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+I V G GTR+ P T ++PK ++   +KP+I + +    A G+TE+VL  +     + 
Sbjct: 10  KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69

Query: 62  NFLK---EFEAKL----------GIKIICSQETEPLGTAGPLA-------LARDKLIDDT 101
           N      E EA L           ++ IC      +     LA       L    ++ D 
Sbjct: 70  NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD- 128

Query: 102 GEPFFVLNSDVI-SEYP-------FAEMIE-FHKAHGGEASIMVTKVDEPSKYGVVVME- 151
            EP  V+  DVI  EY         AEMI  F +   G + IMV  V + + YGVV  + 
Sbjct: 129 -EPVAVILPDVILDEYESDLSQDNLAEMIRRFDET--GHSQIMVEPVADVTAYGVVDCKG 185

Query: 152 ------ESTGKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRPTSIEKEV 198
                 ES   V   VEKPK  V   N    G Y+L+  +   +   P     E+
Sbjct: 186 VELAPGESVPMV-GVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEI 239

Length = 302

>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 27/143 (18%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            +IL GG  +R+        K L+    KP++   ++ L+     EVV+  N        
Sbjct: 1   GVILAGGRSSRMG-----GDKALLPLGGKPLLERVLDRLRPA-GDEVVVVTNRPE----- 49

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPL-----ALARDKLIDDTGEPFFVLNSDV--ISE 115
            +    A LG+ ++     +P    GPL      L          +   VL  D+  ++ 
Sbjct: 50  -IAAALAGLGVPVVP----DPDPGQGPLAGLAAGLRAAP----DADAVLVLACDMPFLTP 100

Query: 116 YPFAEMIEFHKAHGGEASIMVTK 138
                ++   +A G + ++ V  
Sbjct: 101 DLLRRLLAALEASGADIAVPVYD 123

This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 74/351 (21%), Positives = 140/351 (39%), Gaps = 66/351 (18%)

Query: 5   ILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64
           IL  G GTR++    S+PK L     K ++   +++ + +     ++ + +Q E +   L
Sbjct: 6   ILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSL 62

Query: 65  KEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMI 122
                  G++ +  ++   LGT   +      L    G+   VLN DV  +       ++
Sbjct: 63  AHLP---GLEFV--EQQPQLGTGHAVQQLLPVLKGFEGD-LLVLNGDVPLLRPETLEALL 116

Query: 123 EFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGIYL 178
             H++   + +++  ++  P  YG V  + +   VE+ VE     P     N+INAGIY 
Sbjct: 117 NTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVEQIVEDRDCTPAQRQNNRINAGIYC 175

Query: 179 LNPAVLDRI--ELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGL--RLYL 234
            N   L  +  +L   + +KE +    +     +++ P   +++      I G+  R  L
Sbjct: 176 FNWPALAEVLPKLSSNNDQKEYYLTDTV-----SLLDPVMAVEVEDY-QEINGINDRKQL 229

Query: 235 --------DSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAV----------- 275
                   + +++K  L   T  +         S  I E   +GPDV +           
Sbjct: 230 AQCEEILQNRIKEKWMLAGVTFID-------PASCTISETVELGPDVIIEPQTHLRGNTV 282

Query: 276 -------GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 319
                  GPG ++E+       TV+       ++ +S S IG    +G +A
Sbjct: 283 IGSGCRIGPGSLIENSQIGENVTVL-------YSVVSDSQIGDGVKIGPYA 326

Length = 450

>gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 16/111 (14%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M A+I+ GG GTR+        KPL+E   KP+I   +EAL+ + V E+++AI+      
Sbjct: 1   MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEALRKI-VDEIIVAISPHTPK- 54

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 111
               KE+   +G+K+I   ET   G    L  A    ++  G P  V+++D
Sbjct: 55  ---TKEYLESVGVKVI---ETPGEGYVEDLRFA----LESLGTPILVVSAD 95

Length = 177

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 315
           +H SA I     IG  V++GP  V+ +GV +     +  G  I          IG    +
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDG-----VKIGADCRL 157

Query: 316 GQWARVENMTILGEDVHV 333
                + +   +G  V +
Sbjct: 158 HANVTIYHAVRIGNRVII 175

Length = 343

>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 25/129 (19%)

Query: 118 FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME-ESTGKVEKFVEKPK----------- 165
           +   ++ H+  G + ++ V  VDE    G  +M+ +  G++ +F EKPK           
Sbjct: 132 YRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDT 191

Query: 166 -LFVGNKINA---------GIYLLNPAVL-DRIELRPTSIE--KEVFPKIALEGKLFAMV 212
                +   A         GIY+ +  VL D +   P   +  KE+ P+   + K+ + +
Sbjct: 192 SRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYL 251

Query: 213 LPGFWMDIG 221
             G+W DIG
Sbjct: 252 FDGYWEDIG 260

Length = 429

>gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 22/198 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSV-PKPLVEFA-NKPMILHQIEALKA-VGVTEVVLAINYQP 57
           M  +IL GG G+RL PL+    PK  ++   +  ++   ++ L     + E ++  N   
Sbjct: 2   MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTN--- 58

Query: 58  EVMLNFLKEFEAKLGIKIICSQETEPLG--TAGPLALARDKLIDDTGEPFF-VLNSD-VI 113
           E     +KE   ++ I+       EP G  TA  +ALA      + G+    VL SD VI
Sbjct: 59  EKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVI 118

Query: 114 S-EYPFAEMIEFHKAHGGEASIMVT---KVDEPS------KYGVVVMEESTGKVEKFVEK 163
           + E  F   ++       E   +VT       P       + G  + E    KV++FVEK
Sbjct: 119 ADEEAFLNAVK-KAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKVDRFVEK 177

Query: 164 PKLFVGNK-INAGIYLLN 180
           P L    K + +G YL N
Sbjct: 178 PDLETAKKYVESGEYLWN 195

Length = 333

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 64/285 (22%), Positives = 103/285 (36%), Gaps = 76/285 (26%)

Query: 118 FAEMIEFHKAHGGEASI--MVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG-----N 170
             +M++FH   G   ++  +    +E S +GV+ ++   G++  F+EKP    G     +
Sbjct: 133 PRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPD-GRIRGFLEKPADPPGLPDDPD 191

Query: 171 KINA--GIYLLNPAVLDRIELR-----PTSIE---KEVFPKIALEGKLFAM-----VLPG 215
           +  A  G Y+     L    LR       S      ++ P++   G+ +        +PG
Sbjct: 192 EALASMGNYVFTTDALVD-ALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPG 250

Query: 216 -------FWMDIG---------------QPRDYITGLRLYLDSLRKKSSLKLATGANIVG 253
                  +W D+G                P        LY       +S      A  V 
Sbjct: 251 ATERDRGYWRDVGTIDAYYDAHMDLLSVHPV-----FNLYNREWPIYTSSPNLPPAKFVD 305

Query: 254 NVLVHESAQ---IGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISS 306
                 SAQ   +  G +I G  V    + P  VVESG  +    +M GVRI + A +  
Sbjct: 306 GGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR 365

Query: 307 SIIGWHSTVGQWARVENMTILGEDV-------HVCDEIYSNGGVV 344
           +I+  +  V         TI G D+        V     S GG+V
Sbjct: 366 AILDKNVVVP-----PGATI-GVDLEEDRRRFTV-----SEGGIV 399

Length = 407

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 300
           S K+  G  I  NV++    +IGE  +IGP V +G   V+  G R+     +   V++ K
Sbjct: 103 SAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGK 162

Query: 301 HACI-SSSIIGW------HSTVGQWARVENM--TILGEDVHV 333
           +  I S ++IG       H+  G   ++  +   I+ +DV +
Sbjct: 163 NVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEI 204

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 41/90 (45%)

Query: 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 303
            + +GA I G V++ +  +IG    I     +G GCVV + V +    +M G ++     
Sbjct: 25  IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNY 84

Query: 304 ISSSIIGWHSTVGQWARVENMTILGEDVHV 333
           +  S++G +  +G      N+    + V V
Sbjct: 85  VGDSVLGENVNLGAGTITANLRFDDKPVKV 114

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
           +H +A I  G  IG +V +GP C+V  GV++       GV +K H  I       H+T+G
Sbjct: 1   IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIG-----DGVELKSHVVILG-----HTTIG 50

Query: 317 QWARVENMTILGED 330
           +  R+    ++G  
Sbjct: 51  EGTRIFPGAVIGGV 64

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVML 61
          A+IL  G G+R+      +PK  +E   KP++ H +EA  A   + E+V+ +   P   +
Sbjct: 3  AIILAAGSGSRMG---ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVV---PPDDI 56

Query: 62 NFLKEFEAKLGIKII 76
          +  KE       K++
Sbjct: 57 DLAKELAKYGLSKVV 71

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 256 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 304
           +V   A+IGE       C+IGP+V +G G V+ S V +   T + +  RI   A I
Sbjct: 7   IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASI 62

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G  +R+        K L+    KP++ H ++A  A G++ V++ +  + + +  
Sbjct: 3   AIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRA 57

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            L      +   +I     E + ++  LA   + L  D  +   +L +D   ++      
Sbjct: 58  ALAGLPVVV---VINPDWEEGMSSS--LAAGLEALPADA-DAVLILLADQPLVTAETLRA 111

Query: 121 MIEFHKAHGG 130
           +I+  +  G 
Sbjct: 112 LIDAFREDGA 121

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186

>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 33/198 (16%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A KPM+ H I+A   +G   V L   +  +++
Sbjct: 6   MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLL 62

Query: 61  LNFLKE------FEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-- 112
              L +       +A            E LGT   +  A     DD  E   +L  DV  
Sbjct: 63  KQTLADEPLNWVLQA------------EQLGTGHAMQQAAPFFADD--EDILMLYGDVPL 108

Query: 113 ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFV 168
           IS      + +  K  GG   + V K+D P+ YG +  E   GKV   VE+     +   
Sbjct: 109 ISVETLQRLRD-AKPQGGIGLLTV-KLDNPTGYGRITRE--NGKVVGIVEQKDATDEQRQ 164

Query: 169 GNKINAGIYLLNPAVLDR 186
             +IN GI + N A L R
Sbjct: 165 IQEINTGILVANGADLKR 182

Length = 456

>gnl|CDD|234725 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 16/91 (17%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          +  +IL GG   R+      V K L E   KP+I H IE L    V E+V+  N      
Sbjct: 4  ITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLAPQ-VDEIVINANRNLARY 58

Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLA 91
                  A  G+ +I   ++      GPLA
Sbjct: 59 --------AAFGLPVI--PDSLA-DFPGPLA 78

Length = 193

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 256 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 304
           +V   A+IGE       C+IGP+V +G G V+ S V +   T + +  RI   A I
Sbjct: 10  IVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65

Length = 262

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 313
              +H +A I  G  IG DV +GP C++   V +       G  +K H  +       H+
Sbjct: 3   MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIG-----DGTVLKSHVVVEG-----HT 52

Query: 314 TVGQWARVENMTILGED 330
           T+G+  R+     +GED
Sbjct: 53  TIGRNNRIFPFASIGED 69

Length = 260

>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          +  +IL GG   R+        K L+E   KP++ H +E LK + V EVV++ N      
Sbjct: 1  ITGVILAGGKSRRM-----GGDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQ--- 51

Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLA 91
               E  A LG+ +I     +     GPLA
Sbjct: 52 -----ERYALLGVPVI----PDEPPGKGPLA 73

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 299
            S K+  G +I  N ++     IG+G +IG    +G G  + +  RL +  T+   VRI 
Sbjct: 111 PSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIG 170

Query: 300 KHACI-SSSIIG 310
               I S ++IG
Sbjct: 171 NRVIIHSGAVIG 182

Length = 343

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHA 302
            +    +I  NV++     IGE  +IG    +G    +  G  +    T+   V I  + 
Sbjct: 113 TIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV 172

Query: 303 CISS-SIIG 310
            I S ++IG
Sbjct: 173 IIHSGAVIG 181

Length = 338

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 313
              +H +A +  G  IG +V +GP CV+   V +       G  I  H  I       H+
Sbjct: 2   MAKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIG-----DGTVIGSHVVIDG-----HT 51

Query: 314 TVGQWARVENMTILGED 330
           T+G+  R+     +GED
Sbjct: 52  TIGKNNRIFPFASIGED 68

Length = 262

>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 62/240 (25%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-----HQIEALKAVGVTEVVLAINYQP 57
           A+IL GG GTRL PLT    KP V F  +  ++     + + +    G+  V +   Y+ 
Sbjct: 1   AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS----GIRNVGVLTQYKS 56

Query: 58  EVMLNFLKE------FEAKLGIKIICSQETEP----LGTAGPLALARDKLIDDTGEPFFV 107
             + + L             G+ I+  Q+ +      GTA  +    D +     E   +
Sbjct: 57  RSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLI 116

Query: 108 LNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLF 167
           L+ D I    + EM++FH   G + +++                                
Sbjct: 117 LSGDHIYNMDYREMLDFHIESGADITVVY------------------------------- 145

Query: 168 VGNKINAGIYLLNPAVLDRIEL-----RPTSIE--KEVFPKIALEGKLFAMVLPGFWMDI 220
              K + GIY+ +  +L  IEL        S +  K++ P +  + K++A    G+W DI
Sbjct: 146 ---KASMGIYIFSKDLL--IELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200

>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 19/91 (20%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          M  +IL GG   R+R       K L+    +P+I H I+ L+      V+ A   Q    
Sbjct: 5  MTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQGRY- 57

Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLA 91
                  A+ G+ ++  +        GPLA
Sbjct: 58 --------AEFGLPVVPDELPG----FGPLA 76

Length = 192

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACI-SS 306
           A I    +V  SA+IG+G  IGP+V +G G  +   V +     +   V I   + I  +
Sbjct: 92  AGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPN 151

Query: 307 SIIGWHSTVGQWARVENMTILGED----VHVCDE----IYSNGGVVL 345
            +I     +G+   + +  ++G D     H  +     I   G V++
Sbjct: 152 VVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVII 198

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 30/105 (28%)

Query: 248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 307
             NI    ++H     G   +IG +V VG G V+        CT+               
Sbjct: 44  RTNIQDGSVLHVDP--GYPTIIGDNVTVGHGAVLHG------CTIGDNC----------- 84

Query: 308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 352
           +IG  + +   A +   +I+             G +V P K I  
Sbjct: 85  LIGMGAIILDGAVIGKGSIVAA-----------GSLVPPGKVIPP 118

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN 54
          A+I   G GTR       VPK  +E   +P++ H ++A  A   + EVV+ ++
Sbjct: 2  AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVS 51

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217

>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAIN 54
          A+IL  GFG+R+      VPK  +E   +P++ H +EA      + E+V+ ++
Sbjct: 7  AVILAAGFGSRMG---NPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVS 56

Length = 230

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 255 VLVHESA------QIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSS 307
            L+H SA       IGEGC+I     + P   +   V + +   +     I     I+  
Sbjct: 85  TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144

Query: 308 -------IIGWHSTVGQWARVENMTILGEDVHV 333
                   IG  + +G  A +     +G    +
Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAII 177

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTV 315
           +H +A +  G  IG +V +GP CV+   V +       G  I  H  I   + IG ++ +
Sbjct: 2   IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIG-----DGTVIGSHVVIDGPTTIGKNNRI 56

Query: 316 GQWA 319
             +A
Sbjct: 57  FPFA 60

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAIN 54
          A+I   G G+R+       PK  +    KP++ H +EA  A   + E+++ + 
Sbjct: 6  AIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVP 55

Length = 227

>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 76/235 (32%)

Query: 118 FAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 174
           + + ++ H+  G + +I    VDE   S +G++ ++  TG++ +F EKPK   G+++ A 
Sbjct: 138 YMDFVQKHRESGADITIACLPVDESRASDFGLMKID-DTGRIIEFSEKPK---GDELKAM 193

Query: 175 -----------------------GIYLLNPAVLDRIELR---PTSIE--KEVFPKIALEG 206
                                  GIY+    VL ++ LR   PT+ +   E+ P    EG
Sbjct: 194 QVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKL-LRWRFPTANDFGSEIIPGAIKEG 252

Query: 207 -KLFAMVLPGFWMDIGQPRD-YITGLRL--------YLDSLRK--KSSLKL----ATGAN 250
             + A +  G+W DIG  +  Y   L L        + D       S   L         
Sbjct: 253 YNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCR 312

Query: 251 IVGNVLVHESAQIGEGC----------LIGPDVAVGPGCVVESGVRLSRCTVMRG 295
           I  ++       I  GC          ++G    +G G  +E        TVM G
Sbjct: 313 ITDSI-------ISHGCFLRECKIEHSVVGLRSRIGEGVEIED-------TVMMG 353

Length = 436

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANK 31
          M A+IL GG GTRL  LT ++ KP V F  K
Sbjct: 4  MLAMILAGGQGTRLGKLTKNIAKPAVPFGGK 34

Length = 380

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 37.8 bits (89), Expect = 0.001
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 259 ESAQIGEGC----------LIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI 308
           +++ + EGC          ++   V VG G VVE  V      +M  V I ++A I  +I
Sbjct: 11  KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSV------IMPNVGIGRNAVIRRAI 64

Query: 309 IGWHSTVGQWARVENMTILGEDVHVCDEIY-SNGGVVL 345
           I  +  +      + + I G+        Y +  G+V+
Sbjct: 65  IDKNVVIP-----DGVVIGGDPEEDRARFYVTEDGIVV 97

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV-----MRGVRIKKHACI-SSS 307
           NV +  +  I EG  I  DV +GP  VV +     R  +     ++G  +K+ A I +++
Sbjct: 22  NVKIQSNVSIYEGVTIEDDVFIGP-NVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA 80

Query: 308 IIGWHSTVGQWARV 321
            I    T+G++A V
Sbjct: 81  TILPGVTIGEYALV 94

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 259 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS------SSIIGWH 312
           E A++G+GC +GP   + PG V+E G R+     M+   + K A  +       + IG  
Sbjct: 320 EGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAG 379

Query: 313 STVG 316
           + +G
Sbjct: 380 ANIG 383

Length = 456

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 257 VHESA--QIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHST 314
           V  S    IG   +I P+V  GPG  V S           G  I   + +  + +G  + 
Sbjct: 263 VFFSYDTVIGRDVVIEPNVVFGPGVTVAS-----------GAVIHAFSHLEGAHVGEGAE 311

Query: 315 VGQWARVENMTILGEDVHV 333
           VG +AR+     LGE   V
Sbjct: 312 VGPYARLRPGAELGEGAKV 330

Length = 446

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 315
           ++H +A I     +G  V +GP  V+ + V      +  G  I  HA     I+G  + +
Sbjct: 1   MIHPTAVIDPSAKLGSGVEIGPFAVIGANV-----EIGDGTWIGPHA----VILGP-TRI 50

Query: 316 GQWARVENMTILGED 330
           G+  ++    ++G++
Sbjct: 51  GKNNKIHQGAVVGDE 65

Length = 255

>gnl|CDD|233966 TIGR02665, molyb_mobA, molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 14/89 (15%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           +IL GG   R+        K LVE   KP+I H +  L+   V+++ ++ N  PE    
Sbjct: 3  GVILAGGRARRMG----GRDKGLVELGGKPLIEHVLARLRPQ-VSDLAISANRNPE---- 53

Query: 63 FLKEFEAKLGIKIICSQETEPLGTAGPLA 91
            +  +A  G+ ++     +     GPLA
Sbjct: 54 --RYAQAGFGLPVVPDALADF---PGPLA 77

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 186

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 249 ANIVGNVLVHESAQIGEG------CLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKH 301
           A I    ++   A+IGE       C+IGP+V +G G V++S V +    T+ R  RI   
Sbjct: 4   AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPF 63

Query: 302 ACI 304
           A I
Sbjct: 64  ASI 66

Length = 260

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 260 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG 295
              IGE  LIGP+V +G G ++   V +    V+ G
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR 289
             ++ E+  IG   +IG  V +G   ++ +GV +  
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIK 299
            S  +  G  I+   +++   +IG+  +I     V   CV+   V ++   T+  GV I 
Sbjct: 89  PSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIG 148

Query: 300 KHACISSSIIGWHSTVGQWARVENMTILG 328
           +        IG  +T+ Q   +    ++G
Sbjct: 149 EGV-----FIGAGATIIQGVTIGAGAVVG 172

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 55/264 (20%), Positives = 94/264 (35%), Gaps = 84/264 (31%)

Query: 107 VLNSDVISEYPFAEMIEFHKAHGGEASI--MVTKVDEPSKYGVVVMEESTGKVEKFVEKP 164
           +L  D I +  ++ M+  H   G + ++  +    +E S +GV+ ++E+  ++  FVEKP
Sbjct: 134 ILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDEN-DRITAFVEKP 192

Query: 165 KL---FVGNKINA----GIYLLNPAVLDRIELR----PTS---IEKEVFPKIALEGKL-- 208
                  G+   +    GIY+ N   L  +       P S     K++ PKI  EGK+  
Sbjct: 193 ANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYA 252

Query: 209 --FAMVL-------PGFWMDIGQPRDY------ITG----LRLY---------------- 233
             F+            +W D+G    Y      +      L LY                
Sbjct: 253 HPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPA 312

Query: 234 -------------LDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV 280
                        ++SL       ++ G  I G V+           ++   V V     
Sbjct: 313 KFVFDRSGRRGMAINSL-------VSGGCIISGAVVRR--------SVLFSRVRVNSFSN 357

Query: 281 VESGVRLSRCTVMRGVRIKKHACI 304
           VE  V L    V R  R+++  C+
Sbjct: 358 VEDSVLLPDVNVGRSCRLRR--CV 379

Length = 425

>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
           +IL GG   R+        K L+    KP+I   ++ L+      + L IN  P 
Sbjct: 8  GVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPA 58

Length = 366

>gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

 Score = 38.2 bits (90), Expect = 0.004
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLA 52
          KPL +   KPMI+   E     G   VV+A
Sbjct: 19 KPLADIGGKPMIVRVYERASKAGADRVVVA 48

Length = 245

>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 23 KPLVEFANKPMILHQIE-ALKAVGVTEVVLA 52
          KPL + A KPMI H  E A KA G+ EVV+A
Sbjct: 18 KPLADIAGKPMIQHVYERAKKAKGLDEVVVA 48

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	100.0
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	100.0
KOG1462	433	consensus Translation initiation factor 2B, gamma	100.0
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
KOG1461	673	consensus Translation initiation factor 2B, epsilo	100.0
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	100.0
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	100.0
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	100.0
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	100.0
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	100.0
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	100.0
PRK10122	297	GalU regulator GalF; Provisional	100.0
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	100.0
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	100.0
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	100.0
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	100.0
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	100.0
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	100.0
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	100.0
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	100.0
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	100.0
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	100.0
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	100.0
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	100.0
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	100.0
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.97
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.97
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.96
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.96
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.95
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.94
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.94
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.94
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.93
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.93
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.93
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.92
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.9
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.84
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	99.82
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.82
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.82
PLN02917	293	CMP-KDO synthetase	99.8
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.77
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.75
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.73
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.69
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.67
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.67
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.67
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.67
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.67
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	99.66
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.66
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.66
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.66
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.65
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.65
COG2068	199	Uncharacterized MobA-related protein [General func	99.63
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.63
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.63
PLN02296	269	carbonate dehydratase	99.63
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.63
PLN02472	246	uncharacterized protein	99.62
PRK13627	196	carnitine operon protein CaiE; Provisional	99.62
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.61
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.61
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	99.6
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.6
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.59
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	99.59
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.59
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.59
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.58
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.58
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.58
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.58
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.57
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.57
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.57
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.57
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.56
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.56
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.56
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.56
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.56
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	99.55
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.55
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.55
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.55
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.54
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.54
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.54
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	99.54
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.53
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	99.53
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.53
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.52
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.52
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.51
PRK13627	196	carnitine operon protein CaiE; Provisional	99.51
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.5
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.5
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.49
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.49
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.49
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.48
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.48
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.48
PLN02296	269	carbonate dehydratase	99.47
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.47
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.47
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.46
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.46
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.46
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	99.46
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.46
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.45
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	99.45
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.45
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.44
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.44
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.44
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.43
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.43
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.43
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.43
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.42
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.42
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.4
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	99.4
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.4
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.4
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.4
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.39
PLN02472	246	uncharacterized protein	99.38
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.38
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.37
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.37
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.37
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.36
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	99.35
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.34
PRK11132	273	cysE serine acetyltransferase; Provisional	99.33
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.33
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.33
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.32
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.31
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.31
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.31
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.3
PLN02694	294	serine O-acetyltransferase	99.29
PRK10502	182	putative acyl transferase; Provisional	99.29
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.28
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.28
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	99.28
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	99.28
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.28
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.25
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.24
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.23
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.22
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.22
PRK10092	183	maltose O-acetyltransferase; Provisional	99.21
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.19
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.19
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.18
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.17
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.16
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.16
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.16
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	99.16
PRK10191	146	putative acyl transferase; Provisional	99.15
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.15
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.14
PLN02357	360	serine acetyltransferase	99.14
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.11
PRK10191	146	putative acyl transferase; Provisional	99.11
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.11
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.1
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.1
PLN02739	355	serine acetyltransferase	99.09
PRK11132	273	cysE serine acetyltransferase; Provisional	99.08
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.08
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.06
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.05
PLN02694	294	serine O-acetyltransferase	99.05
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.04
PRK10092	183	maltose O-acetyltransferase; Provisional	99.04
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.03
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	99.02
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.02
PRK10502	182	putative acyl transferase; Provisional	99.02
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.01
PLN02357	360	serine acetyltransferase	99.01
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.0
PLN02739	355	serine acetyltransferase	98.99
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.98
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.98
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	98.95
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.95
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.95
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	98.92
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.9
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.88
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.87
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	98.86
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.85
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	98.84
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.83
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.82
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.81
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.8
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.79
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	98.68
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.63
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.62
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.59
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	98.58
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.55
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.54
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.52
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.45
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.4
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.39
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.37
COG4801	277	Predicted acyltransferase [General function predic	98.24
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	98.22
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	98.16
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	98.11
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	98.11
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	98.06
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	98.04
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	98.01
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.98
COG4801	277	Predicted acyltransferase [General function predic	97.92
PLN02830	615	UDP-sugar pyrophosphorylase	97.77
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	97.77
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	97.72
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	97.71
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	96.23
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	96.0
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	95.67
KOG2638	498	consensus UDP-glucose pyrophosphorylase [Carbohydr	95.49
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	94.47
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	94.38
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	94.25
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	93.78
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	93.19
COG1920	210	Predicted nucleotidyltransferase, CobY/MobA/RfbA f	93.09
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	92.81
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	92.64
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	92.16
KOG2388	477	consensus UDP-N-acetylglucosamine pyrophosphorylas	92.0
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	91.72
cd06438	183	EpsO_like EpsO protein participates in the methano	91.14
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	91.1
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	90.51
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	90.19
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	90.01
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	89.92
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	89.57
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	89.52
PF01983	217	CofC: Guanylyl transferase CofC like; InterPro: IP	89.42
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	89.21
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	88.78
PRK11204	420	N-glycosyltransferase; Provisional	88.54
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	87.18
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	86.26
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	86.09
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	85.67
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	85.56
PRK14583	444	hmsR N-glycosyltransferase; Provisional	84.97
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	84.8
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	84.69
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	83.78
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	83.32
COG1664	146	CcmA Integral membrane protein CcmA involved in ce	82.82
PRK10073	328	putative glycosyl transferase; Provisional	82.56
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	82.39
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	82.01
KOG2978	238	consensus Dolichol-phosphate mannosyltransferase [	81.76
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	81.52
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	80.1

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=9.2e-66  Score=435.97  Aligned_cols=361  Identities=59%  Similarity=0.979  Sum_probs=341.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChH-HHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |+|+||.+|.|+||+|||...|||+.|++|+|||++++++|.++|+++|++.+++..+ ..++..+.|..++|+++.+..
T Consensus        10 vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~   89 (371)
T KOG1322|consen   10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILAST   89 (371)
T ss_pred             eeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEe
Confidence            7899999999999999999999999999999999999999999999999999999877 445555668788899999999


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      +.++.|+++.+..+++++....+.+|+|+++|+++..+++++++.|+++++++++++++.++++.||++..|+++|+|.+
T Consensus        90 eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~  169 (371)
T KOG1322|consen   90 ETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIR  169 (371)
T ss_pred             ccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeE
Confidence            99999999999999998754333389999999999999999999999999999999999999999999999997799999


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHHHhhhh
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK  239 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~  239 (361)
                      |.|||..+.++..++|+|+|+++++++++..+.+++.+.+|.++...+++++.++|||.|+++|+||+++.++|+.....
T Consensus       170 F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~  249 (371)
T KOG1322|consen  170 FVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK  249 (371)
T ss_pred             ehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999999998888


Q ss_pred             cccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCc
Q 018060          240 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA  319 (361)
Q Consensus       240 ~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~  319 (361)
                      ..++.+.+++.+.+++.+++.+.+|++|.|+++++||++|+|+++++|.+|.|+.+.+++.++.|..++++.++.||.|+
T Consensus       250 ~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~  329 (371)
T KOG1322|consen  250 YTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA  329 (371)
T ss_pred             cCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce
Confidence            77888888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCceEECCCeEECCceEEcCcEEccCceeecccCCCcccC
Q 018060          320 RVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM  361 (361)
Q Consensus       320 ~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~~~~~~  361 (361)
                      .|.+.+++|+|+.|.+.-.++++.+.|.+.....++++++||
T Consensus       330 ~id~~a~lG~nV~V~d~~~vn~g~~l~~ks~~~~v~~~~iI~  371 (371)
T KOG1322|consen  330 RIDKNAVLGKNVIVADEDYVNEGSGLPIKSGITVVLKPAIIM  371 (371)
T ss_pred             EEecccEeccceEEecccccccceeEEeccceeecccccccC
Confidence            999999999999999999999999999999999999999986

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.8e-57  Score=409.99  Aligned_cols=336  Identities=40%  Similarity=0.666  Sum_probs=295.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||+|+||+|+|..+||||+|++|+|||+|+|++|.++|++++++.+++..+.+++++.+ ...++.++.+..+
T Consensus         2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d-~~~~~~~I~y~~e   80 (358)
T COG1208           2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGD-GEGLGVRITYVVE   80 (358)
T ss_pred             ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhc-ccccCCceEEEec
Confidence            899999999999999999999999999999999999999999999999999999999999999987 2445788999999


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ..+.|++++++.+.+.+.  . ++|++++||.+++.++.++++.|+++.+.++++.....++..||.+..+.++++|.+|
T Consensus        81 ~~~lGTag~l~~a~~~l~--~-~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f  157 (358)
T COG1208          81 KEPLGTAGALKNALDLLG--G-DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEF  157 (358)
T ss_pred             CCcCccHHHHHHHHHhcC--C-CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEE
Confidence            999999999999999994  3 4899999999999999999999999977788888888888889999988543699999


Q ss_pred             eecCC--CCCCCeEEEEEEEeCHhhHhhcc-CCCCccccchHHhHHhcCc-eEEEEecceEEEcCCHHHHHHHHHHHHHh
Q 018060          161 VEKPK--LFVGNKINAGIYLLNPAVLDRIE-LRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIGQPRDYITGLRLYLDS  236 (361)
Q Consensus       161 ~ek~~--~~~~~~~~~Giyi~~~~~l~~l~-~~~~~~~~d~l~~l~~~~~-i~~~~~~~~~~~i~t~~dy~~a~~~~l~~  236 (361)
                      .|||.  ...++++++|+|+|++++|+++. ....++..++++.++++++ ++++.++++|.|+++|+||+++++.++..
T Consensus       158 ~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~  237 (358)
T COG1208         158 REKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG  237 (358)
T ss_pred             EecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence            99994  56778999999999999999775 4456677789999999998 99999999999999999999999988864


Q ss_pred             hhhccccc-------ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEE
Q 018060          237 LRKKSSLK-------LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII  309 (361)
Q Consensus       237 ~~~~~~~~-------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i  309 (361)
                      ........       +.. +.+.++++|++++.|++++.|+++++||++|+|+++++|.+|+|+++|.|+++++|.+|+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi  316 (358)
T COG1208         238 DGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSII  316 (358)
T ss_pred             cccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEE
Confidence            43321111       223 7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060          310 GWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       310 ~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~  348 (361)
                      +.+|.||++.      .+|+ ++++.++.+..+.+++..
T Consensus       317 ~~~~~ig~~~------~i~d-~~~g~~~~i~~g~~~~~~  348 (358)
T COG1208         317 GENCKIGASL------IIGD-VVIGINSEILPGVVVGPG  348 (358)
T ss_pred             cCCcEECCce------eecc-eEecCceEEcCceEeCCC
Confidence            9999999922      2777 777777777655554443

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-53  Score=356.22  Aligned_cols=359  Identities=40%  Similarity=0.724  Sum_probs=323.4

Q ss_pred             eEEEEecC--CCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEe
Q 018060            2 KALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS   78 (361)
Q Consensus         2 ~avIla~G--~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~   78 (361)
                      +||||.+|  +|+||+||+.+.||+|.|++|+|||+|-|+.+.+. |..+|+++-=++.+.+.+|+.+....+.+.+.|.
T Consensus         4 ~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL   83 (407)
T KOG1460|consen    4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYL   83 (407)
T ss_pred             EEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhh
Confidence            69999999  79999999999999999999999999999999886 6899999888888889999998777888899999


Q ss_pred             cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeEEEcCCCCe
Q 018060           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGK  156 (361)
Q Consensus        79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~~~~~~  156 (361)
                      .+..+.|+++.++..++.+-...++.++++++|.-..++++++++.|++++..+++++++.  +...+||.+..|++|++
T Consensus        84 ~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~e  163 (407)
T KOG1460|consen   84 REDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGE  163 (407)
T ss_pred             ccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCc
Confidence            9999999999999999887666777999999999999999999999999999999998886  45678999999988899


Q ss_pred             EeeeeecCCCCCCCeEEEEEEEeCHhhHhhccC--------------------CCC---ccccchHHhHHhcCceEEEEe
Q 018060          157 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL--------------------RPT---SIEKEVFPKIALEGKLFAMVL  213 (361)
Q Consensus       157 v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~--------------------~~~---~~~~d~l~~l~~~~~i~~~~~  213 (361)
                      |+++.|||+.+.++..++|+|+|++++|+.+.+                    .+.   .++.|+++.|+.++++++|..
T Consensus       164 vlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t  243 (407)
T KOG1460|consen  164 VLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYET  243 (407)
T ss_pred             eEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEec
Confidence            999999999999999999999999999975521                    012   234589999999999999999


Q ss_pred             cceEEEcCCHHHHHHHHHHHHHhhhhccccccc----CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec
Q 018060          214 PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLA----TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR  289 (361)
Q Consensus       214 ~~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~----~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~  289 (361)
                      +++|..+.|+-.-+.+++.+|..+.+.....+.    ..++|.++++|+|++++++.++||+|+.||.+++||+++++.+
T Consensus       244 ~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~  323 (407)
T KOG1460|consen  244 TDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRE  323 (407)
T ss_pred             ccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeee
Confidence            999999999999999999999877664443332    2357999999999999999999999999999999999999999


Q ss_pred             eEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------------ceEECCCeEECCceEEcCcEEccCceeecccCC
Q 018060          290 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------------MTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK  356 (361)
Q Consensus       290 ~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------------~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~  356 (361)
                      |+|.++|+|.+|+++-+|+||.++.||.|+.+..             -++.|++|.+++.+.+.++.+.|++++.....+
T Consensus       324 sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~l~vs~~~  403 (407)
T KOG1460|consen  324 SIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKELNVSVQD  403 (407)
T ss_pred             eeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCccceeeec
Confidence            9999999999999999999999999999999875             378999999999999999999999999998887


Q ss_pred             CcccC
Q 018060          357 PEIVM  361 (361)
Q Consensus       357 ~~~~~  361 (361)
                       +|||
T Consensus       404 -eIil  407 (407)
T KOG1460|consen  404 -EIIL  407 (407)
T ss_pred             -ceeC
Confidence             6664

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=4.6e-52  Score=386.47  Aligned_cols=333  Identities=26%  Similarity=0.386  Sum_probs=243.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccC-------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLG-------   72 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~-------   72 (361)
                      |+|||||||+|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+++|+.+. .+|+       
T Consensus         4 m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~   82 (380)
T PRK05293          4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGG   82 (380)
T ss_pred             EEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCC
Confidence            7999999999999999999999999999999 899999999999999999999999999999999752 2233       


Q ss_pred             cEEE--EecCCC---CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCc
Q 018060           73 IKII--CSQETE---PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKY  145 (361)
Q Consensus        73 ~~i~--~~~~~~---~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~  145 (361)
                      +.+.  +..+.+   ..|++++++.+.+.+....+++|++++||++++.++.++++.|.++++++++++...  +++..|
T Consensus        83 ~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~y  162 (380)
T PRK05293         83 VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRF  162 (380)
T ss_pred             EEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcccc
Confidence            3332  333332   379999999999998532234899999999999999999999988888887776543  567889


Q ss_pred             eeEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhc-cC------CCCccccchHHhHHhcC-ceEEEEecceE
Q 018060          146 GVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-EL------RPTSIEKEVFPKIALEG-KLFAMVLPGFW  217 (361)
Q Consensus       146 ~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l-~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~~~  217 (361)
                      |.+..+++ ++|.++.|||....+++.++|+|+|+++++..+ ..      ...++..|+++.+++++ +++++..+++|
T Consensus       163 G~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w  241 (380)
T PRK05293        163 GIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW  241 (380)
T ss_pred             CEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEE
Confidence            99998876 899999999987678899999999999988543 21      12245568999998764 69999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcE
Q 018060          218 MDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR  297 (361)
Q Consensus       218 ~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~  297 (361)
                      .|++++++|+++++.++......  ....+...+.+.+.+.+.+.|++++.| .++.||++|+|+.  .+.+|+|+++|.
T Consensus       242 ~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~  316 (380)
T PRK05293        242 KDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TVEHSVLFQGVQ  316 (380)
T ss_pred             EeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--eecceEEcCCCE
Confidence            99999999999998777532211  011122222333333344444444444 3455555555543  345566666666


Q ss_pred             ECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          298 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       298 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ||++|+|.+|+|++++.|++++.|.+ |+|++++.|++++.+.+
T Consensus       317 I~~~~~i~~svi~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~  359 (380)
T PRK05293        317 VGEGSVVKDSVIMPGAKIGENVVIER-AIIGENAVIGDGVIIGG  359 (380)
T ss_pred             ECCCCEEECCEEeCCCEECCCeEEeE-EEECCCCEECCCCEEcC
Confidence            66666666666666666666666655 66666666666655544

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.9e-50  Score=376.04  Aligned_cols=336  Identities=21%  Similarity=0.320  Sum_probs=240.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhh-ccCcE-EE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEA-KLGIK-II   76 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~-~~~~~-i~   76 (361)
                      |+|||||||+|+||+|||..+||+|+|++|+ |||+|+|++|.++|+++|++++++..+.+.+|+.+ |.. ..... +.
T Consensus         6 ~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK00844          6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYIT   85 (407)
T ss_pred             eEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEE
Confidence            6899999999999999999999999999999 99999999999999999999999999999999964 211 11111 21


Q ss_pred             EecCC------CCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeE
Q 018060           77 CSQET------EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVV  148 (361)
Q Consensus        77 ~~~~~------~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v  148 (361)
                      ..++.      ...|++++++.+.+++.+...++|++++||++++.++.+++++|.++++++++++.+.  +++..||++
T Consensus        86 ~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv  165 (407)
T PRK00844         86 PVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVI  165 (407)
T ss_pred             ECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEE
Confidence            11211      1479999999999998543334699999999999999999999998888888887653  567789999


Q ss_pred             EEcCCCCeEeeeeecCCCCC-------CCeEEEEEEEeCHhhH-hhccC------CCCccccchHHhHHhcCceEEEEe-
Q 018060          149 VMEESTGKVEKFVEKPKLFV-------GNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVL-  213 (361)
Q Consensus       149 ~~~~~~~~v~~~~ek~~~~~-------~~~~~~Giyi~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~~i~~~~~-  213 (361)
                      .+|++ ++|..+.|||....       +.++++|+|+|++++| +.+..      ...++..|+++.+++++.+++|.+ 
T Consensus       166 ~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~  244 (407)
T PRK00844        166 EVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFS  244 (407)
T ss_pred             EECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcc
Confidence            99886 89999999986432       4689999999999986 44542      234556799999999988999865 


Q ss_pred             -----------cceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEE-CCC--cEECCCcEECCCC
Q 018060          214 -----------PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQI-GEG--CLIGPDVAVGPGC  279 (361)
Q Consensus       214 -----------~~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~--~~i~~~~~ig~~~  279 (361)
                                 +|+|.|+++|++|+++++.+++......  ...+...+.+.....+.+.+ +..  ..+.++++||++|
T Consensus       245 ~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~  322 (407)
T PRK00844        245 TNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFN--LYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGS  322 (407)
T ss_pred             cccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccc--cCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCC
Confidence                       5899999999999999999886422110  00000011110111111111 111  1122455666666


Q ss_pred             EECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          280 VVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       280 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .|+ ++.|.+|+|+++|.|+++|+|++|+|+++|.|+++|.|.+ ++|++++.|++++++.+
T Consensus       323 ~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        323 IIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR-AILDKNVVVPPGATIGV  382 (407)
T ss_pred             EEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe-eEECCCCEECCCCEECC
Confidence            665 5666666666666666666666666666666666666665 66666666666665544

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=1.8e-49  Score=365.30  Aligned_cols=330  Identities=30%  Similarity=0.486  Sum_probs=276.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      +|||||||+|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++ ..+.+.+++.+ ...+++++.+..+
T Consensus         1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~~~   79 (353)
T TIGR01208         1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYIVQ   79 (353)
T ss_pred             CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEEEC
Confidence            689999999999999999999999999999999999999999999999999999 88899999875 2345667777767


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ..+.|++++++.+.+.+.  + +++++++||++++.++.++++.|.++++++++++.+..++..|+.+..+++ ++|.++
T Consensus        80 ~~~~G~~~al~~a~~~l~--~-~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~-~~v~~~  155 (353)
T TIGR01208        80 GEPLGLAHAVYTARDFLG--D-DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKL  155 (353)
T ss_pred             CCCCCHHHHHHHHHHhcC--C-CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCC-CcEEEE
Confidence            777899999999999883  3 379999999999999999999999888888888888778888998888654 789999


Q ss_pred             eecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060          161 VEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL  234 (361)
Q Consensus       161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~~l  234 (361)
                      .|||....+++.++|+|+|++.+++.+.+.     ......++++.+++++ ++++|.++++|.++++|+||+++++.++
T Consensus       156 ~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll  235 (353)
T TIGR01208       156 VEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL  235 (353)
T ss_pred             EECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHH
Confidence            999987778899999999999888877421     2222357889998776 6999999999999999999999999998


Q ss_pred             HhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCC
Q 018060          235 DSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHS  313 (361)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~  313 (361)
                      ++...... .+.+.+.+.++++|++++.| .++.|.++++||++|.|+.. .|. +|+|+++|.|+ ++.|.+|+|++++
T Consensus       236 ~~~~~~~~-~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~-~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~  311 (353)
T TIGR01208       236 DEVEREVQ-GVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENS-YIGPYTSIGEGVVIR-DAEVEHSIVLDES  311 (353)
T ss_pred             hhcccccC-CcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCc-EECCCCEECCCCEEe-eeEEEeeEEcCCC
Confidence            75432221 25667788888888888888 78888778888888888743 444 67777777776 6778889999999


Q ss_pred             EECCCc-EEcCceEECCCeEECCceEEcC
Q 018060          314 TVGQWA-RVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       314 ~ig~~~-~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .|+.++ .+.+ +++|+++.|++++.+.+
T Consensus       312 ~i~~~~~~~~~-~ii~~~~~i~~~~~~~~  339 (353)
T TIGR01208       312 VIEGVQARIVD-SVIGKKVRIKGNRRRPG  339 (353)
T ss_pred             EEcCCcceeec-CEEcCCCEECCCccccc
Confidence            998884 7765 99999999999988863

Alternate name: dTDP-D-glucose synthase

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-50  Score=357.14  Aligned_cols=333  Identities=26%  Similarity=0.440  Sum_probs=283.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcc-hHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH---hh-h--ccCcE
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE---FE-A--KLGIK   74 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~p-li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~---~~-~--~~~~~   74 (361)
                      -|+|||+|+|+||.|||+.++||-+|++||. ||+++|.++.++|+.+|.|+++++...+.+|+..   |. .  ..++.
T Consensus         7 laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~v~   86 (393)
T COG0448           7 LAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGGVF   86 (393)
T ss_pred             EEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCcEE
Confidence            4899999999999999999999999999997 9999999999999999999999988899999986   31 1  11233


Q ss_pred             EEEec-----CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCcee
Q 018060           75 IICSQ-----ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGV  147 (361)
Q Consensus        75 i~~~~-----~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~  147 (361)
                      +..-.     .....|+++++++.+..+.+.++|+++++.||+++..|+++++++|.+.++++|+++.+.  ++++.+|+
T Consensus        87 ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGi  166 (393)
T COG0448          87 ILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGV  166 (393)
T ss_pred             EeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCc
Confidence            32211     123468999999999888877888999999999999999999999999999999999987  56678999


Q ss_pred             EEEcCCCCeEeeeeecCCC-CCCC-eEEEEEEEeCHhhHhhcc-------CCCCccccchHHhHHhcCceEEEEecceEE
Q 018060          148 VVMEESTGKVEKFVEKPKL-FVGN-KINAGIYLLNPAVLDRIE-------LRPTSIEKEVFPKIALEGKLFAMVLPGFWM  218 (361)
Q Consensus       148 v~~~~~~~~v~~~~ek~~~-~~~~-~~~~Giyi~~~~~l~~l~-------~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~  218 (361)
                      +..|++ ++|.+|.|||.. +.++ +.++|+|+|++++|..+.       ....+|..+++|.++..+.+++|+++|||.
T Consensus       167 m~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~  245 (393)
T COG0448         167 MNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWR  245 (393)
T ss_pred             eEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhh
Confidence            999997 999999999987 4444 899999999999886552       123578889999999999999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHhhhhccccc-ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcE
Q 018060          219 DIGQPRDYITGLRLYLDSLRKKSSLK-LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR  297 (361)
Q Consensus       219 ~i~t~~dy~~a~~~~l~~~~~~~~~~-~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~  297 (361)
                      |++|.++|+++|..+++   ....-. ..++-.|......-|.+++..++.+ .+|.|+.+|+|..  .|.||+|+.++.
T Consensus       246 dVgTi~syy~aNmdLl~---~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~  319 (393)
T COG0448         246 DVGTIDSYYEANMDLLS---PQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVR  319 (393)
T ss_pred             hcccHHHHHHhhHHhcC---CCCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeE
Confidence            99999999999998876   111122 2344456666667777777777777 6999999999988  899999999999


Q ss_pred             ECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060          298 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  342 (361)
Q Consensus       298 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~  342 (361)
                      |+++|+|.+|+|++++.||.+|.|.. ++|.++|+|++|+++.+.
T Consensus       320 I~~gs~i~~svim~~~~IG~~~~l~~-aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         320 IGKGSVIENSVIMPDVEIGEGAVLRR-AIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             ECCCCEEEeeEEeCCcEECCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence            99999999999999999999999998 999999999999999765

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=8.1e-49  Score=367.85  Aligned_cols=319  Identities=24%  Similarity=0.393  Sum_probs=239.7

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh-hcc--C-cE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE-AKL--G-IK   74 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~-~~~--~-~~   74 (361)
                      |+|||||||+|+||+|||..+||+|+|++|+ |||+|+|+++.++|+++++|++++..+.+++|+.+ |. ..+  + +.
T Consensus         4 ~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~   83 (429)
T PRK02862          4 VLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVE   83 (429)
T ss_pred             EEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEE
Confidence            4799999999999999999999999999999 99999999999999999999999988999999974 21 111  2 22


Q ss_pred             EEEecCCC-----CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCcee
Q 018060           75 IICSQETE-----PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGV  147 (361)
Q Consensus        75 i~~~~~~~-----~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~  147 (361)
                      +....+..     ..|++++++.+.+.+....+++|++++||++++.++.++++.|++.++++++++.+.  +++..||+
T Consensus        84 i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~  163 (429)
T PRK02862         84 VLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGL  163 (429)
T ss_pred             EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceE
Confidence            32222211     269999999999988543345899999999999999999999998888888887655  45778999


Q ss_pred             EEEcCCCCeEeeeeecCCCC---------------------CCCeEEEEEEEeCHhhHhhc-cCC--CCccccchHHhHH
Q 018060          148 VVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLDRI-ELR--PTSIEKEVFPKIA  203 (361)
Q Consensus       148 v~~~~~~~~v~~~~ek~~~~---------------------~~~~~~~Giyi~~~~~l~~l-~~~--~~~~~~d~l~~l~  203 (361)
                      +.++++ +++..+.|||...                     ...+.++|+|+|++++|..+ ...  ..++..|+++.++
T Consensus       164 i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~  242 (429)
T PRK02862        164 MKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI  242 (429)
T ss_pred             EEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence            999876 8999999998631                     23578999999999999644 332  2345578999998


Q ss_pred             hcCceEEEEecceEEEcCCHHHHHHHHHHHHHhhhhccc-----------ccccC-----CcEEecceEEcCCCEECCCc
Q 018060          204 LEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSS-----------LKLAT-----GANIVGNVLVHESAQIGEGC  267 (361)
Q Consensus       204 ~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~~~~-----------~~~~~-----~~~i~~~~~i~~~~~i~~~~  267 (361)
                      .+++++++.++++|.|+++|++|+++++.++........           ....+     ++.+ .+++|++++.| +++
T Consensus       243 ~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~-~~~~ig~~~~i-~~~  320 (429)
T PRK02862        243 RDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATI-TESIIAEGCII-KNC  320 (429)
T ss_pred             ccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEE-EeCEECCCCEE-CCc
Confidence            888999999999999999999999999987732211100           00111     2222 23566666666 566


Q ss_pred             EECCCcEECCCCEECCCcEEeceEEcc-------------------CcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          268 LIGPDVAVGPGCVVESGVRLSRCTVMR-------------------GVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       268 ~i~~~~~ig~~~~i~~~~~i~~~~i~~-------------------~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      .|+ +|+||++|+||++|+|.+|+|+.                   ++.||++|.|.+++|++++.||+++.+.+
T Consensus       321 ~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~  394 (429)
T PRK02862        321 SIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVN  394 (429)
T ss_pred             EEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEec
Confidence            663 56666666666666666666654                   46666666666666666666666666654

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.2e-48  Score=364.47  Aligned_cols=334  Identities=23%  Similarity=0.348  Sum_probs=237.2

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcc-hHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhh---ccCcEE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEA---KLGIKI   75 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~p-li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~---~~~~~i   75 (361)
                      |+|||||||+|+||+|+|..+||+|+|++|+| ||+|+|+++.++|+++++|++++..+.+.+|+.+ |..   ..+..+
T Consensus        16 ~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i   95 (425)
T PRK00725         16 TLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFV   95 (425)
T ss_pred             eEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeE
Confidence            46999999999999999999999999999997 9999999999999999999999999999999975 321   111112


Q ss_pred             EEec-------CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCce
Q 018060           76 ICSQ-------ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYG  146 (361)
Q Consensus        76 ~~~~-------~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~  146 (361)
                      .+..       +..+.|++++++.+.+.+.....++|+|++||++++.++.++++.|.++++++++++.+.  +++..||
T Consensus        96 ~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG  175 (425)
T PRK00725         96 DLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFG  175 (425)
T ss_pred             EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccce
Confidence            2111       223579999999999998533234899999999999999999999999888888887665  6678999


Q ss_pred             eEEEcCCCCeEeeeeecCCCC-------CCCeEEEEEEEeCHhhHh-hccC------CCCccccchHHhHHhcCceEEEE
Q 018060          147 VVVMEESTGKVEKFVEKPKLF-------VGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMV  212 (361)
Q Consensus       147 ~v~~~~~~~~v~~~~ek~~~~-------~~~~~~~Giyi~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~i~~~~  212 (361)
                      ++.+|++ ++|.+|.|||...       .+.+.++|+|+|++++|. .|..      ...++..|+++.++.++++++|.
T Consensus       176 ~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~  254 (425)
T PRK00725        176 VMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHP  254 (425)
T ss_pred             EEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEE
Confidence            9999876 8999999998643       256899999999999874 4532      12345679999999999999998


Q ss_pred             ec-----------ceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEE---CCC--cEECCCcEEC
Q 018060          213 LP-----------GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQI---GEG--CLIGPDVAVG  276 (361)
Q Consensus       213 ~~-----------~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i---~~~--~~i~~~~~ig  276 (361)
                      ++           ++|.|+++|++|+++++.++...... . .......+.......+.+.+   +.+  +.+ .+|+||
T Consensus       255 ~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~-~-~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~-~~s~i~  331 (425)
T PRK00725        255 FSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPEL-D-LYDRNWPIWTYQEQLPPAKFVFDRSGRRGMA-INSLVS  331 (425)
T ss_pred             ecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchh-h-ccCCCCccccCCCCCCCCeEeccCCCCcceE-EeCEEc
Confidence            85           59999999999999999887532110 0 00000000000001111111   111  112 255555


Q ss_pred             CCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060          277 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       277 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~  340 (361)
                      ++|+| ++|.|.+|+|+++|.|+++|+|.+|+|+++|.||++|.|.+ |+|++++.|++++++.
T Consensus       332 ~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~-~ii~~~~~i~~~~~i~  393 (425)
T PRK00725        332 GGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR-CVIDRGCVIPEGMVIG  393 (425)
T ss_pred             CCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee-EEECCCCEECCCCEEC
Confidence            55555 45555556666666666666666666666666666666654 5666666665555554

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=3.7e-49  Score=365.35  Aligned_cols=339  Identities=20%  Similarity=0.301  Sum_probs=260.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChH-HHHHHHHHhhhccCcEE---
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEAKLGIKI---   75 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i---   75 (361)
                      |+|||||+|+|+||+|||..+||||+|++|+ |||+|+|++|.++|+++|++++++..+ .+++|+.+ ...|++++   
T Consensus         3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~~~~   81 (369)
T TIGR02092         3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHRKRD   81 (369)
T ss_pred             EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcccccC
Confidence            7899999999999999999999999999999 999999999999999999999999776 99999975 22334332   


Q ss_pred             ---EEecCCC-C--CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEcc--CCCCce-
Q 018060           76 ---ICSQETE-P--LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYG-  146 (361)
Q Consensus        76 ---~~~~~~~-~--~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~--~~~~~~-  146 (361)
                         .+..++. .  .|++.+++.+++.+.....++|++++||++++.++.+++++|+++++.+++++.+..  ++..|+ 
T Consensus        82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~  161 (369)
T TIGR02092        82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDT  161 (369)
T ss_pred             cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCc
Confidence               1222222 2  255667888888874222348999999999999999999999998888988887764  566774 


Q ss_pred             eEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHh-hcc----CCCCccccchHHhHHhcCceEEEEecceEEEcC
Q 018060          147 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD-RIE----LRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG  221 (361)
Q Consensus       147 ~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~-~l~----~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~  221 (361)
                      .+..+++ +++..+.+++........++|+|+|+++++. .+.    ....++..++++.++...+++++..+++|.|++
T Consensus       162 vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIg  240 (369)
T TIGR02092       162 ILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANIN  240 (369)
T ss_pred             EEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcC
Confidence            4556654 7887775433322345679999999999764 332    111123347888888778899999999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCC
Q 018060          222 QPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKH  301 (361)
Q Consensus       222 t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~  301 (361)
                      +|++|+++++.+++....... .......+.....+.+.+.|++++.| ++|+||++|+|+  +.|.+|+|+++|.|+++
T Consensus       241 t~~~l~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~  316 (369)
T TIGR02092       241 SVKSYYKANMDLLDPQNFQSL-FYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKD  316 (369)
T ss_pred             CHHHHHHHHHHHhCCcchhhh-cCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCC
Confidence            999999999988875432110 00111111112223366667777777 689999999997  36899999999999999


Q ss_pred             CEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEcc
Q 018060          302 ACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  346 (361)
Q Consensus       302 ~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~  346 (361)
                      |+|.+|+|++++.|++++.+.+ ++||++++|++++.+.+..+.|
T Consensus       317 ~~i~~sii~~~~~I~~~~~i~~-~ii~~~~~v~~~~~~~~~~~~~  360 (369)
T TIGR02092       317 ALIKNCIIMQRTVIGEGAHLEN-VIIDKDVVIEPNVKIAGTSEQP  360 (369)
T ss_pred             CEEEeeEEeCCCEECCCCEEEE-EEECCCCEECCCCEeCCCCCcc
Confidence            9999999999999999999988 9999999999999997754433

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=3.2e-48  Score=358.41  Aligned_cols=333  Identities=22%  Similarity=0.379  Sum_probs=266.2

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhhc----cCcEEE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEAK----LGIKII   76 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~~----~~~~i~   76 (361)
                      |||||||+|+||+|+|...||+|+|++|+ |||+|+++.+.++|+++|+|++++..+++.+++.+ |...    ..+++.
T Consensus         1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   80 (361)
T TIGR02091         1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL   80 (361)
T ss_pred             CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence            69999999999999999999999999999 89999999999999999999999988899999874 2110    112222


Q ss_pred             Ee-----cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeEE
Q 018060           77 CS-----QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVV  149 (361)
Q Consensus        77 ~~-----~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~  149 (361)
                      ..     .+....|++++++.+...+.....++|++++||++++.++.++++.|+++++++++++.+.  +++..||++.
T Consensus        81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~  160 (361)
T TIGR02091        81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ  160 (361)
T ss_pred             CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence            11     1122479999999999888433334899999999999999999999988877777776654  4567899999


Q ss_pred             EcCCCCeEeeeeecCCCCCCC-------eEEEEEEEeCHhhHh-hccC------CCCccccchHHhHHhcCceEEEEecc
Q 018060          150 MEESTGKVEKFVEKPKLFVGN-------KINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMVLPG  215 (361)
Q Consensus       150 ~~~~~~~v~~~~ek~~~~~~~-------~~~~Giyi~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~i~~~~~~~  215 (361)
                      ++++ +++..+.|||....+.       +.++|+|+|+++++. .+..      ...++..|+++.++++++++++.+++
T Consensus       161 ~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~  239 (361)
T TIGR02091       161 VDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG  239 (361)
T ss_pred             ECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCC
Confidence            9875 8999999998655455       899999999999874 4432      12345568999999999999999999


Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEE-ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEcc
Q 018060          216 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANI-VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR  294 (361)
Q Consensus       216 ~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i-~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~  294 (361)
                      +|.|++++++|++++..++.......  .......+ .....+.+.+.|++.+.+ ++++||++|+|+++ .|.+|+|++
T Consensus       240 ~w~digt~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~  315 (361)
T TIGR02091       240 YWRDVGTIDSFWEANMDLVSVVPPFD--LYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGI  315 (361)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCchhh--ccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECC
Confidence            99999999999999998886432211  11111111 122345556666666666 67899999999987 889999999


Q ss_pred             CcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          295 GVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       295 ~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +|.|+++|+|.+|+|++++.||+++.|.+ |+||+++.|++++.+.+
T Consensus       316 ~~~I~~~~~i~~sii~~~~~v~~~~~l~~-~ivg~~~~i~~~~~i~~  361 (361)
T TIGR02091       316 RVRIGSGSTVEDSVIMGDVGIGRGAVIRN-AIIDKNVRIGEGVVIGN  361 (361)
T ss_pred             CCEECCCCEEeeeEEeCCCEECCCCEEee-eEECCCCEECCCCEeCC
Confidence            99999999999999999999999999976 99999999999988753

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=3.4e-48  Score=364.68  Aligned_cols=332  Identities=21%  Similarity=0.343  Sum_probs=261.2

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhh-------cc
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEA-------KL   71 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~-------~~   71 (361)
                      |+|||||||+|+||+|||..+||+|+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+ |..       ..
T Consensus         4 ~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~   83 (436)
T PLN02241          4 VAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDG   83 (436)
T ss_pred             eEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCC
Confidence            7899999999999999999999999999997 99999999999999999999999999999999985 210       01


Q ss_pred             CcEEEEecCC-----CCCCCchHHHHHHhhccCCC---CCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEcc--C
Q 018060           72 GIKIICSQET-----EPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--E  141 (361)
Q Consensus        72 ~~~i~~~~~~-----~~~g~~~al~~~~~~~~~~~---~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~--~  141 (361)
                      ++.+.+..+.     .+.|++++++.++..+.+..   .++|++++||++++.++.+++++|+++++++++++.+.+  +
T Consensus        84 ~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~  163 (436)
T PLN02241         84 FVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESR  163 (436)
T ss_pred             CEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhh
Confidence            1333333222     35799999999887664321   348999999999999999999999999988998887764  4


Q ss_pred             CCCceeEEEcCCCCeEeeeeecCCCCC---------------------CCeEEEEEEEeCHhhHhhc-cC---CCCcccc
Q 018060          142 PSKYGVVVMEESTGKVEKFVEKPKLFV---------------------GNKINAGIYLLNPAVLDRI-EL---RPTSIEK  196 (361)
Q Consensus       142 ~~~~~~v~~~~~~~~v~~~~ek~~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~~  196 (361)
                      +..||.+.++++ ++|.++.|||....                     .++.++|+|+|++++|..+ .+   ...++..
T Consensus       164 ~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~  242 (436)
T PLN02241        164 ASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGS  242 (436)
T ss_pred             cCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhH
Confidence            678999999875 89999999986432                     3689999999999998644 31   2235667


Q ss_pred             chHHhHHhc-CceEEEEecceEEEcCCHHHHHHHHHHHHHhhhhc-----cc-----c-ccc----CCcEEecceEEcCC
Q 018060          197 EVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK-----SS-----L-KLA----TGANIVGNVLVHES  260 (361)
Q Consensus       197 d~l~~l~~~-~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~~-----~~-----~-~~~----~~~~i~~~~~i~~~  260 (361)
                      |+++.++.+ .++++|.++++|.|+++|++|+++++.+++.....     ..     . .++    .++.+.+ +.|+++
T Consensus       243 dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~  321 (436)
T PLN02241        243 EIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITD-SIISHG  321 (436)
T ss_pred             HHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEE-eEEcCC
Confidence            899999887 47999999999999999999999999988643110     00     0 000    2333433 778888


Q ss_pred             CEECCCcEECCCcEECCCCEECCCcEEeceEEcc----------------C---cEECCCCEEeccEEcCCCEECCCcEE
Q 018060          261 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR----------------G---VRIKKHACISSSIIGWHSTVGQWARV  321 (361)
Q Consensus       261 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~----------------~---~~i~~~~~i~~~~i~~~~~ig~~~~i  321 (361)
                      ++|+ +|.| .+|+|+++|.|+++|+|.+|+|+.                +   +.||++|++.+++|+++++||+++.+
T Consensus       322 ~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i  399 (436)
T PLN02241        322 CFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVI  399 (436)
T ss_pred             cEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEE
Confidence            8888 8888 478999999999999998888755                2   37999999999999999999999888


Q ss_pred             cCc------eEECCCeEECCc
Q 018060          322 ENM------TILGEDVHVCDE  336 (361)
Q Consensus       322 ~~~------~~ig~~~~v~~~  336 (361)
                      .++      .++|+++.++++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~  420 (436)
T PLN02241        400 INKDGVQEADREEEGYYIRSG  420 (436)
T ss_pred             ecccccCCccccccccEEeCC
Confidence            743      344555555555

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.7e-47  Score=336.57  Aligned_cols=325  Identities=27%  Similarity=0.403  Sum_probs=264.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||+|+||..   .+||-|-|++|+||++|+++...+.+.+++++++++..+.+++.+.+.     .++.|..|
T Consensus         3 ~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~v~Q   74 (460)
T COG1207           3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEFVLQ   74 (460)
T ss_pred             ceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceEEEe
Confidence            5799999999999999   999999999999999999999999999999999999999999998763     15778889


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      .++.|+++|++++.+.+.+..+.++|+++||+  +....|+++++.|.+.++.++++.+...+|..||.+..+++ ++|.
T Consensus        75 ~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~-g~V~  153 (460)
T COG1207          75 EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVT  153 (460)
T ss_pred             cccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCC-CcEE
Confidence            99999999999999999544434799999999  44556999999999989999999999999999999999986 8999


Q ss_pred             eeeecCC----CCCCCeEEEEEEEeCHhhHhhc----cCC---CCccccchHHhHHhcC-ceEEEEecc--eEEEcCCHH
Q 018060          159 KFVEKPK----LFVGNKINAGIYLLNPAVLDRI----ELR---PTSIEKEVFPKIALEG-KLFAMVLPG--FWMDIGQPR  224 (361)
Q Consensus       159 ~~~ek~~----~~~~~~~~~Giyi~~~~~l~~l----~~~---~~~~~~d~l~~l~~~~-~i~~~~~~~--~~~~i~t~~  224 (361)
                      .+.|...    +..-..+++|+|+|+.+.|..+    ..+   ...+..|++..+...+ ++.++..+.  ...-+++..
T Consensus       154 ~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~  233 (460)
T COG1207         154 AIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV  233 (460)
T ss_pred             EEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH
Confidence            9998754    2345678999999998855433    222   3344457777765554 466776653  345678888


Q ss_pred             HHHHHHHHHHHhhhhc---c--cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060          225 DYITGLRLYLDSLRKK---S--SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  299 (361)
Q Consensus       225 dy~~a~~~~l~~~~~~---~--~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~  299 (361)
                      ++-++.+.+..+..+.   .  .-..+.+.+|++.+.|++++.|.+++.|.+++.||++|+||++|+|.||.|++++.|.
T Consensus       234 qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~  313 (460)
T COG1207         234 QLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIK  313 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEE
Confidence            8888887776554432   1  1223677888899999999999999999999999999999999999999999999998


Q ss_pred             CCCEEeccEEcCCCEECCCcEEcCceEECCCeEEC
Q 018060          300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVC  334 (361)
Q Consensus       300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~  334 (361)
                      .+++|++|.|+++|.||+++.+++++.+++++.||
T Consensus       314 ~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIG  348 (460)
T COG1207         314 AYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIG  348 (460)
T ss_pred             ecceeeccEecCCcccCCccccCCcCcccCCCeEe
Confidence            88999999998888888888888733333333333

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=8.4e-46  Score=352.20  Aligned_cols=338  Identities=22%  Similarity=0.365  Sum_probs=278.7

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||.|+||++   ..||+|+|++|+|||+|+++++.+++++++++++++..+++.+++.+.     ..+.+..+
T Consensus         4 ~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~   75 (459)
T PRK14355          4 LAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQ   75 (459)
T ss_pred             ceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEec
Confidence            5799999999999986   789999999999999999999999999999999999888888888651     23445556


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+++.+... .++|++++||.  +...+++++++.|.+.+..++++..+.+++..|+.+.++++ ++|.
T Consensus        76 ~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~-g~v~  153 (459)
T PRK14355         76 EEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVL  153 (459)
T ss_pred             CCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCC-CCEE
Confidence            67789999999999998532 34899999998  45667899999998877777877777777888999888876 8999


Q ss_pred             eeeecCCC----CCCCeEEEEEEEeCHhhH-hhccC------CCCccccchHHhHHhcC-ceEEEEecce--EEEcCCHH
Q 018060          159 KFVEKPKL----FVGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR  224 (361)
Q Consensus       159 ~~~ek~~~----~~~~~~~~Giyi~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~~--~~~i~t~~  224 (361)
                      ++.|||..    ..+++.++|+|+|+++++ +.+..      +......|+++.+++++ ++.+|.++++  |.++++|+
T Consensus       154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~  233 (459)
T PRK14355        154 RIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRA  233 (459)
T ss_pred             EEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHH
Confidence            99988632    234688999999999864 43431      12233468899999886 5999999887  99999999


Q ss_pred             HHHHHHHHHHHhhhhc----ccccccCC-cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060          225 DYITGLRLYLDSLRKK----SSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  299 (361)
Q Consensus       225 dy~~a~~~~l~~~~~~----~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~  299 (361)
                      +|+++++.++.+....    ....+++. +.+.+++.|++++.|+++|.|+++++||++|.|+++|.|.+|+|+++|.|+
T Consensus       234 ~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~  313 (459)
T PRK14355        234 QLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVK  313 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEEC
Confidence            9999988666543321    11244555 478999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060          300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~  348 (361)
                      +++++.+++|++++.||+++.+.++++|+++++||+++.+++..++.++
T Consensus       314 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~  362 (459)
T PRK14355        314 AGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGS  362 (459)
T ss_pred             CCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCc
Confidence            9999999999999999999999999999999999888765554444333

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.3e-44  Score=345.54  Aligned_cols=339  Identities=21%  Similarity=0.280  Sum_probs=269.5

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      +.|||||||+|+||++   ..||+|+|++|+|||+|+++++.+++++++++++++..+.+.+++.+..    ..+.+..+
T Consensus         5 ~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~~~~~   77 (482)
T PRK14352          5 TAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVDIAVQ   77 (482)
T ss_pred             ceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccEEEeC
Confidence            4699999999999997   6899999999999999999999999999999999998778888876531    12344556


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ....|++++++.+++.+....++++++++||+ + ...+++++++.|++++..++++..+..++..|+.+..+++ ++|.
T Consensus        78 ~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~-g~V~  156 (482)
T PRK14352         78 DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVT  156 (482)
T ss_pred             CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCC-CCEE
Confidence            66779999999999988432234799999998 3 4557999999998877777777777788889999888776 8999


Q ss_pred             eeeecCCCC----CCCeEEEEEEEeCHhhHhhc-c---CC---CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHH
Q 018060          159 KFVEKPKLF----VGNKINAGIYLLNPAVLDRI-E---LR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDY  226 (361)
Q Consensus       159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l~~l-~---~~---~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy  226 (361)
                      ++.|||...    ..+++++|+|+|++++|..+ .   ..   ...+..|+++++++++ ++++|.++++|.|++++++|
T Consensus       157 ~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~  236 (482)
T PRK14352        157 AIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV  236 (482)
T ss_pred             EEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence            999998743    34578999999999988543 2   11   2233468899999886 69999999999999998887


Q ss_pred             ------HHHHHHHHHhhhhccccccc-CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060          227 ------ITGLRLYLDSLRKKSSLKLA-TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  299 (361)
Q Consensus       227 ------~~a~~~~l~~~~~~~~~~~~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~  299 (361)
                            ..+++..+..+.+.-...++ ..+++.++++|++++.|+++++|+++++||++|.|+++|.|.+++|+++|.|+
T Consensus       237 ~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~  316 (482)
T PRK14352        237 QLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVV  316 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEe
Confidence                  44455444443332222233 36788999999999999999999999999999999999999999999999997


Q ss_pred             CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060          300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~  348 (361)
                      + +++.+++|++++.||+++.+.++++||+++.++..+.+.++.++.++
T Consensus       317 ~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~  364 (482)
T PRK14352        317 R-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGT  364 (482)
T ss_pred             e-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCc
Confidence            4 78888999999999988888877888888887766655444444433

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.1e-44  Score=341.60  Aligned_cols=333  Identities=21%  Similarity=0.341  Sum_probs=262.7

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||+|+||++   ..||+|+|++|+|||+|+++++.++|++++++++++..+.+++++...    +  +.+..+
T Consensus         8 ~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~--i~~v~~   78 (481)
T PRK14358          8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS----G--VAFARQ   78 (481)
T ss_pred             ceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----C--cEEecC
Confidence            6899999999999987   689999999999999999999999999999999999878888887531    3  444556


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+.+.+...+ +++++++||+  +...+++++++.|+++++.+++++.+.+++..||.+..+++ ++|.
T Consensus        79 ~~~~Gt~~al~~~~~~l~~~~-~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~-g~v~  156 (481)
T PRK14358         79 EQQLGTGDAFLSGASALTEGD-ADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVE  156 (481)
T ss_pred             CCcCCcHHHHHHHHHHhhCCC-CcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCC-CCEE
Confidence            667899999999998884322 3799999998  44567999999998888888888888778888999999876 8999


Q ss_pred             eeeecCCCC----CCCeEEEEEEEeCHh---hHhhccCC---CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHH
Q 018060          159 KFVEKPKLF----VGNKINAGIYLLNPA---VLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYI  227 (361)
Q Consensus       159 ~~~ek~~~~----~~~~~~~Giyi~~~~---~l~~l~~~---~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~  227 (361)
                      +|.|||...    .++++++|+|+|+++   +++.+...   ...+..|+++.+++++ .+++|.+.++|..++.-.+|.
T Consensus       157 ~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~  236 (481)
T PRK14358        157 RIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAG  236 (481)
T ss_pred             EEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHH
Confidence            999998642    245789999999954   55555421   2233358899998886 488888887776666655553


Q ss_pred             HHHHH-HHHh-hhh---cccc-cccC-CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECC
Q 018060          228 TGLRL-YLDS-LRK---KSSL-KLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  300 (361)
Q Consensus       228 ~a~~~-~l~~-~~~---~~~~-~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~  300 (361)
                      .++.. ++.. ...   .... .+.+ ...+.++++||+++.|+++|+|.+++.||++|+|+++|.|.+|+|+++|.|++
T Consensus       237 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~  316 (481)
T PRK14358        237 LAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKP  316 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEee
Confidence            33321 2221 111   1111 1223 33457899999999999999999899999999999999999999999999999


Q ss_pred             CCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEE
Q 018060          301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV  344 (361)
Q Consensus       301 ~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i  344 (361)
                      +++|.+++||+++.|++++.+..+++||+++.|++++.++++.+
T Consensus       317 ~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i  360 (481)
T PRK14358        317 HSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARL  360 (481)
T ss_pred             cceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCcee
Confidence            99999999999999999999988899999999998777654433

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.7e-44  Score=341.40  Aligned_cols=337  Identities=20%  Similarity=0.288  Sum_probs=268.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.|||||||+|+||+.   ..||+|+|++|+|||+|++++|.+.+++++++++++..+.+++++.+.    ++  .+..+
T Consensus         6 ~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~--~~v~~   76 (456)
T PRK14356          6 TGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----DA--RFVLQ   76 (456)
T ss_pred             eeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc----Cc--eEEEc
Confidence            4699999999999975   789999999999999999999999999999999998877777776431    23  33445


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+++.+...+.+++++++||+  +...+++++++.+.  +++++++..+..++..||.+.. ++ ++|.
T Consensus        77 ~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~-g~V~  152 (456)
T PRK14356         77 EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RN-GHVA  152 (456)
T ss_pred             CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cC-CeEE
Confidence            55679999999999888543345899999999  34456888998875  4567777778888889998876 34 8999


Q ss_pred             eeeecCCC------CCCCeEEEEEEEeCHhhHhhccC-------CCCccccchHHhHHhcC-ceEEEEecc--eEEEcCC
Q 018060          159 KFVEKPKL------FVGNKINAGIYLLNPAVLDRIEL-------RPTSIEKEVFPKIALEG-KLFAMVLPG--FWMDIGQ  222 (361)
Q Consensus       159 ~~~ek~~~------~~~~~~~~Giyi~~~~~l~~l~~-------~~~~~~~d~l~~l~~~~-~i~~~~~~~--~~~~i~t  222 (361)
                      .+.|||..      ..+++.++|+|+|++++++.+..       +...+..++++.++..+ ++.++...+  .|.++++
T Consensus       153 ~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~t  232 (456)
T PRK14356        153 AIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNT  232 (456)
T ss_pred             EEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcC
Confidence            99998752      24568899999999998764421       12223357888887665 588888765  6799999


Q ss_pred             HHHHHHHHHHHHHhhhhc---ccccc--cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcE
Q 018060          223 PRDYITGLRLYLDSLRKK---SSLKL--ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR  297 (361)
Q Consensus       223 ~~dy~~a~~~~l~~~~~~---~~~~~--~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~  297 (361)
                      |+||.++++.+..+....   ....+  ++++++++++.|++++.|.++|.|+++++||++|.|+++|.|.+++|+++|.
T Consensus       233 p~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~  312 (456)
T PRK14356        233 PAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGAT  312 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCE
Confidence            999999887666543321   11112  3567788888899999998889998899999999999999999999999999


Q ss_pred             ECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          298 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       298 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                      |+++|.|.+++||+++.||+++.|.++++||+++.|++++.++++.+.+++.+
T Consensus       313 I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i  365 (456)
T PRK14356        313 IHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKA  365 (456)
T ss_pred             EeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEe
Confidence            99999999999999999999999998899999999998888776666555443

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=100.00  E-value=9.5e-44  Score=338.63  Aligned_cols=333  Identities=24%  Similarity=0.363  Sum_probs=263.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||+|+||++   ..||+|+|++|+|||+|+++++.++++++++++++++.+.+.+++.++    ++.+  ..+
T Consensus         1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~i~~--~~~   71 (451)
T TIGR01173         1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----DVNW--VLQ   71 (451)
T ss_pred             CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----CcEE--EEc
Confidence            8999999999999998   789999999999999999999999999999999999888888888764    3333  344


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+.+.+.  ..++|++++||+  +...+++++++.|.+.  ..++++.+.+++..|+.+..+++ +++.
T Consensus        72 ~~~~G~~~ai~~a~~~l~--~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d~~-g~v~  146 (451)
T TIGR01173        72 AEQLGTGHAVLQALPFLP--DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIREND-GKVT  146 (451)
T ss_pred             CCCCchHHHHHHHHHhcC--CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEcCC-CCEE
Confidence            555789999999999884  224899999998  4455689999888664  35666666667777998888875 8999


Q ss_pred             eeeecCCCC----CCCeEEEEEEEeCHhhHh-hccC---C---CCccccchHHhHHhcC-ceEEEEecce--EEEcCCHH
Q 018060          159 KFVEKPKLF----VGNKINAGIYLLNPAVLD-RIEL---R---PTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR  224 (361)
Q Consensus       159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l~-~l~~---~---~~~~~~d~l~~l~~~~-~i~~~~~~~~--~~~i~t~~  224 (361)
                      .+.|||...    .....++|+|+|+++++. .++.   .   ...+..++++.++.++ .+.+|.++++  |.++++|+
T Consensus       147 ~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~  226 (451)
T TIGR01173       147 AIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRL  226 (451)
T ss_pred             EEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHH
Confidence            999987532    235789999999999853 3331   1   2233358888888876 5889988887  89999999


Q ss_pred             HHHHHHHHHHHhhhhc-----ccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060          225 DYITGLRLYLDSLRKK-----SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  299 (361)
Q Consensus       225 dy~~a~~~~l~~~~~~-----~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~  299 (361)
                      +|.+++..+..+....     .....+....+.+++.|++++.|+++++|+++++||++|.|+++|.|.++.|+++|.|+
T Consensus       227 dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~  306 (451)
T TIGR01173       227 QLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIK  306 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEe
Confidence            9988876554322211     11112345567888899999999999999888999999999999999999999999999


Q ss_pred             CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccC
Q 018060          300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  347 (361)
Q Consensus       300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~  347 (361)
                      ++|+|.+++|++++.||+++.|.++++||+++.|++++.+.++.++.+
T Consensus       307 ~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~  354 (451)
T TIGR01173       307 AYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG  354 (451)
T ss_pred             eecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC
Confidence            999999999999999999999988888888888888776655544443

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-44  Score=313.32  Aligned_cols=339  Identities=22%  Similarity=0.374  Sum_probs=263.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhh-ccC-cEEEE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEA-KLG-IKIIC   77 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~-~~~-~~i~~   77 (361)
                      ||||++|+|.|+||..++...||||||++|+|||+|.|++|.++|++++.|++.+ ....+++.+.+... +.. ..+.+
T Consensus        10 fqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~i   89 (433)
T KOG1462|consen   10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEI   89 (433)
T ss_pred             hhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEEEe
Confidence            5899999999999999999999999999999999999999999999999999998 44567777754211 111 11221


Q ss_pred             e-cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc-----------cCCCCc
Q 018060           78 S-QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV-----------DEPSKY  145 (361)
Q Consensus        78 ~-~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~  145 (361)
                      . ......|++++++.....++.  + +|++++||.+++.++..+++.+++.++...++....           +..+..
T Consensus        90 p~~~~~d~gtadsLr~Iy~kikS--~-DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~  166 (433)
T KOG1462|consen   90 PTDDNSDFGTADSLRYIYSKIKS--E-DFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQAR  166 (433)
T ss_pred             ecccccccCCHHHHhhhhhhhcc--C-CEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccccccccc
Confidence            1 122356999999999999953  3 899999999999999999999998876644443321           112234


Q ss_pred             eeEEEcCCCCeEeeeee-----c------------CC-CCCCCeEEEEEEEeCHhhHhhccC--CCCccccchHHhHHhc
Q 018060          146 GVVVMEESTGKVEKFVE-----K------------PK-LFVGNKINAGIYLLNPAVLDRIEL--RPTSIEKEVFPKIALE  205 (361)
Q Consensus       146 ~~v~~~~~~~~v~~~~e-----k------------~~-~~~~~~~~~Giyi~~~~~l~~l~~--~~~~~~~d~l~~l~~~  205 (361)
                      ..+..+++|+|+.....     +            |+ ...+++.++++|+|+.+++++|.+  +..+|..+++|.|+++
T Consensus       167 d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkk  246 (433)
T KOG1462|consen  167 DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKK  246 (433)
T ss_pred             ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhh
Confidence            56666777677654421     1            12 345778999999999999999974  4567888999888765


Q ss_pred             Cc-------------------------------e--EEEEe--cceEEEcCCHHHHHHHHH--HHHHhhhhcc---cccc
Q 018060          206 GK-------------------------------L--FAMVL--PGFWMDIGQPRDYITGLR--LYLDSLRKKS---SLKL  245 (361)
Q Consensus       206 ~~-------------------------------i--~~~~~--~~~~~~i~t~~dy~~a~~--~~l~~~~~~~---~~~~  245 (361)
                      +.                               +  ++|..  .+-+.++++.-.|+++|+  .+. +++...   ....
T Consensus       247 Q~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~-~l~~e~~~~k~~~  325 (433)
T KOG1462|consen  247 QFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLK-KLCSEAKFVKNYV  325 (433)
T ss_pred             hhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHH-Hhccccccccchh
Confidence            33                               2  22222  235678999999999994  332 333221   2223


Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCce
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT  325 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~  325 (361)
                      ...+.+...+.++++++|++++.| ..|+||.+|.||+.++|.||.+++|+.||+++.|++|+||.++.||+++++.+ |
T Consensus       326 ~~~~l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n-C  403 (433)
T KOG1462|consen  326 KKVALVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN-C  403 (433)
T ss_pred             hheeccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee-e
Confidence            344667789999999999999999 79999999999999999999999999999999999999999999999999999 9


Q ss_pred             EECCCeEECCceEEcCcEEc
Q 018060          326 ILGEDVHVCDEIYSNGGVVL  345 (361)
Q Consensus       326 ~ig~~~~v~~~~~i~~~~i~  345 (361)
                      +||.+-+|.+.....+.++.
T Consensus       404 ~Ig~~yvVeak~~~~~ev~~  423 (433)
T KOG1462|consen  404 IIGPGYVVEAKGKHGGEVLV  423 (433)
T ss_pred             EecCCcEEcccccccccEee
Confidence            99999999988887775554

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.3e-42  Score=327.10  Aligned_cols=349  Identities=19%  Similarity=0.275  Sum_probs=250.0

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      +.|||||||.|+||++   ..||+|+|++|+|||+|+++++.+++++++++++++..+.+.+++.++    +..+.+..+
T Consensus         6 ~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~   78 (446)
T PRK14353          6 CLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQ   78 (446)
T ss_pred             ceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEc
Confidence            4699999999999986   689999999999999999999999999999999999888888887653    122333344


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+++.+... .+++++++||+ +. ...++.+++.+ +.+.+++++..+..++..|+.+.. ++ ++|.
T Consensus        79 ~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~-~~-g~v~  154 (446)
T PRK14353         79 KERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIV-KG-GRLV  154 (446)
T ss_pred             CCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEE-CC-CeEE
Confidence            55679999999999888422 24899999998 44 34578888744 445667777777777788988777 33 8999


Q ss_pred             eeeecCCCC----CCCeEEEEEEEeCHhhH-hhccC------CCCccccchHHhHHhcCc-eEEEEec-ceEEEcCCHHH
Q 018060          159 KFVEKPKLF----VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGK-LFAMVLP-GFWMDIGQPRD  225 (361)
Q Consensus       159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~~-i~~~~~~-~~~~~i~t~~d  225 (361)
                      .+.|||...    .+.+.++|+|+|++..+ +.++.      +...+..+.++.+++.+. ++.+..+ +.|.++++|+|
T Consensus       155 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~d  234 (446)
T PRK14353        155 AIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAE  234 (446)
T ss_pred             EEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHH
Confidence            999997532    23678999999998755 43321      122334577888887764 8888876 46999999999


Q ss_pred             HHHHHHHHHHhhhh-----c------------ccccccCCcEEecceEEcCCCEECCCcEECC-----CcEECCCCEECC
Q 018060          226 YITGLRLYLDSLRK-----K------------SSLKLATGANIVGNVLVHESAQIGEGCLIGP-----DVAVGPGCVVES  283 (361)
Q Consensus       226 y~~a~~~~l~~~~~-----~------------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~i~~  283 (361)
                      |.+++..+......     .            ....+++++.|.++++|+++++|+++|.|++     +++||++|+||+
T Consensus       235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~  314 (446)
T PRK14353        235 LAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGP  314 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECC
Confidence            99998766443210     0            1123444555556666666666666666654     467777777777


Q ss_pred             CcEEe-ceEEccCcEECCCCEEecc-----------------EEcCCCEECCCcEE-------cCceEECCCeEECCceE
Q 018060          284 GVRLS-RCTVMRGVRIKKHACISSS-----------------IIGWHSTVGQWARV-------ENMTILGEDVHVCDEIY  338 (361)
Q Consensus       284 ~~~i~-~~~i~~~~~i~~~~~i~~~-----------------~i~~~~~ig~~~~i-------~~~~~ig~~~~v~~~~~  338 (361)
                      ++.|. +++|+++|.||+++.+.++                 +||+++.||.++.+       ..+++||++++||.++.
T Consensus       315 ~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~  394 (446)
T PRK14353        315 YARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSA  394 (446)
T ss_pred             CeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCE
Confidence            77776 6777888888777766544                 44455555554433       11466677777776666


Q ss_pred             E-------cCcEEccCceeecccCCCccc
Q 018060          339 S-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       339 i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +       .++.+++++.|.+++++++++
T Consensus       395 i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~  423 (446)
T PRK14353        395 LVAPVTIGDGAYIASGSVITEDVPDDALA  423 (446)
T ss_pred             EeCCCEECCCCEECCCCEECccCCCCCEE
Confidence            5       367778888888899988765

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=5.2e-42  Score=324.55  Aligned_cols=345  Identities=19%  Similarity=0.297  Sum_probs=241.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||.|+||++   .+||+|+|++|+|||+|+++.+.++ ++++.|++++..+.+++++.++.  .++++.....
T Consensus         3 ~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--~~v~~~~~~~   76 (430)
T PRK14359          3 LSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--PGVIFHTQDL   76 (430)
T ss_pred             ccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--CceEEEEecC
Confidence            4699999999999987   8999999999999999999999987 78999999998888999887631  1345544444


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ....|++++++.+..     ..++|++++||..+.  ..+.++.+.+.++++++++.+.+++..|+.+..+ + +++..+
T Consensus        77 ~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~-g~v~~i  147 (430)
T PRK14359         77 ENYPGTGGALMGIEP-----KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLADPKGYGRVVIE-N-GQVKKI  147 (430)
T ss_pred             ccCCCcHHHHhhccc-----CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-C-CeEEEE
Confidence            445788888876321     234899999999332  1234455555566677777777778789987765 3 799999


Q ss_pred             eecCCC----CCCCeEEEEEEEeCHhhHhhccCC-------CCccccchHHhHHhcC-ceEEEEec-ceEEEcCCHHHHH
Q 018060          161 VEKPKL----FVGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEG-KLFAMVLP-GFWMDIGQPRDYI  227 (361)
Q Consensus       161 ~ek~~~----~~~~~~~~Giyi~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~-~i~~~~~~-~~~~~i~t~~dy~  227 (361)
                      .|+|..    ....+.++|+|+|++++|..+...       ...+..|+++.+++.+ ++..+..+ ++|.|+++|+||.
T Consensus       148 ~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~  227 (430)
T PRK14359        148 VEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELA  227 (430)
T ss_pred             EECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHH
Confidence            998752    224678999999999998765321       2233457888888774 58888886 5899999999999


Q ss_pred             HHHHHHHHhhhhc-----------ccccccCCcEEecceEEcCCCEECCCcEEC-----------C----CcEECCCCEE
Q 018060          228 TGLRLYLDSLRKK-----------SSLKLATGANIVGNVLVHESAQIGEGCLIG-----------P----DVAVGPGCVV  281 (361)
Q Consensus       228 ~a~~~~l~~~~~~-----------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~-----------~----~~~ig~~~~i  281 (361)
                      +++..+..+..+.           ....+++++.+.+++.|++++.|+++|.|+           +    +++||++|+|
T Consensus       228 ~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i  307 (430)
T PRK14359        228 KAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHI  307 (430)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEE
Confidence            9987665543321           122355666666666677776665555443           1    2333444444


Q ss_pred             CCCcEEeceEEccCc----------EECCCCEEeccEEcCCCEECCCcEEcC-------ceEECCCeEECCceEEc----
Q 018060          282 ESGVRLSRCTVMRGV----------RIKKHACISSSIIGWHSTVGQWARVEN-------MTILGEDVHVCDEIYSN----  340 (361)
Q Consensus       282 ~~~~~i~~~~i~~~~----------~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~~~~v~~~~~i~----  340 (361)
                      ++++.|.+|.|+++|          +||+++.|.+|+||++|.||+++.+.+       +++||+++.+|.++.+.    
T Consensus       308 ~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~  387 (430)
T PRK14359        308 RPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVN  387 (430)
T ss_pred             CCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcE
Confidence            444444444444444          444555566667777777777765542       26777777777776653    


Q ss_pred             ---CcEEccCceeecccCCCccc
Q 018060          341 ---GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       341 ---~~~i~~~~~v~~~~~~~~~~  360 (361)
                         ++.|++++.|.+++++++++
T Consensus       388 ig~~~~i~~g~~v~~~v~~~~~~  410 (430)
T PRK14359        388 IEDNVLIAAGSTVTKDVPKGSLA  410 (430)
T ss_pred             ECCCCEECCCCEEccccCCCcEE
Confidence               57888899999999998765

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.1e-43  Score=318.92  Aligned_cols=339  Identities=20%  Similarity=0.314  Sum_probs=272.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH--hhhccCcEEEEe
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE--FEAKLGIKIICS   78 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~--~~~~~~~~i~~~   78 (361)
                      +|||+||.-..+||.|+|...|++|||++|.|||+|+|++|.++|+++++|+|+.+..++++|+++  |...+...++.+
T Consensus        25 LqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti  104 (673)
T KOG1461|consen   25 LQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTI  104 (673)
T ss_pred             eEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEE
Confidence            589999999999999999999999999999999999999999999999999999999999999996  655555445444


Q ss_pred             cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcC-----CceEEEEEEcc--CCCCceeEEEc
Q 018060           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG-----GEASIMVTKVD--EPSKYGVVVME  151 (361)
Q Consensus        79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~-----~~~~i~~~~~~--~~~~~~~v~~~  151 (361)
                      ........+++++...+.--..  .+|++++||++++.+|.+++++|+.++     .-||++..+..  .....-.+.+|
T Consensus       105 ~s~~~~S~GDamR~id~k~lit--gDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd  182 (673)
T KOG1461|consen  105 CSGESRSVGDAMRDIDEKQLIT--GDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVD  182 (673)
T ss_pred             cCCCcCcHHHHHHHHHhcceee--cceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEc
Confidence            4445567788888776543112  289999999999999999999996553     23666655542  12233467778


Q ss_pred             CCCCeEeeeee----cCC--------------CCCCCeEEEEEEEeCHhhHhhccCCCCc-cccchHHhHHh----cCce
Q 018060          152 ESTGKVEKFVE----KPK--------------LFVGNKINAGIYLLNPAVLDRIELRPTS-IEKEVFPKIAL----EGKL  208 (361)
Q Consensus       152 ~~~~~v~~~~e----k~~--------------~~~~~~~~~Giyi~~~~~l~~l~~~~~~-~~~d~l~~l~~----~~~i  208 (361)
                      ..|.++..|.+    +..              ....++.+++|-+||+.++..|.++..+ ...||+.-++.    ..++
T Consensus       183 ~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~kI  262 (673)
T KOG1461|consen  183 SRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGYKI  262 (673)
T ss_pred             CCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCCeE
Confidence            77789998874    110              1245678999999999999999877543 33466655544    3468


Q ss_pred             EEEEecc--eEEEcCCHHHHHHHHHHHHHhhhhcccc-----------------------cccCCcEEecceEEcCCCEE
Q 018060          209 FAMVLPG--FWMDIGQPRDYITGLRLYLDSLRKKSSL-----------------------KLATGANIVGNVLVHESAQI  263 (361)
Q Consensus       209 ~~~~~~~--~~~~i~t~~dy~~a~~~~l~~~~~~~~~-----------------------~~~~~~~i~~~~~i~~~~~i  263 (361)
                      +++....  |..++.+...|...++.++.+|....-+                       .+.+++.++.++.||.++.|
T Consensus       263 ~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~I  342 (673)
T KOG1461|consen  263 HVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKI  342 (673)
T ss_pred             EEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccc
Confidence            8888765  7889999999999999998887642111                       12345677788889999999


Q ss_pred             CCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060          264 GEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  342 (361)
Q Consensus       264 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~  342 (361)
                      |.+++| .||+||.||.||.||+|.+|.||++|+||+||+|++|+||+++.|+++|.+.+||++|.++++|++.++...
T Consensus       343 g~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n  420 (673)
T KOG1461|consen  343 GSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN  420 (673)
T ss_pred             cCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence            999999 699999999999999999999999999999999999999999999999999999999999999998887543

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=5.4e-43  Score=292.29  Aligned_cols=232  Identities=31%  Similarity=0.542  Sum_probs=207.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      ||+||||||.||||+|+|...||+|+|+.+||||.|.|+.|+.+|+++|.|++++ +...+++++.+ ++.||+++.|..
T Consensus         1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~   79 (286)
T COG1209           1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAV   79 (286)
T ss_pred             CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEe
Confidence            9999999999999999999999999999999999999999999999999999998 66777777776 678899999999


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      |.++.|.++|+..+.+++  .++ +|+++.||.++..++.++++.+.++...+++++.++.+|++||++++|++ +++.+
T Consensus        80 Q~~p~GlA~Av~~a~~fv--~~~-~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~-~~v~~  155 (286)
T COG1209          80 QPEPDGLAHAVLIAEDFV--GDD-DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIG  155 (286)
T ss_pred             cCCCCcHHHHHHHHHhhc--CCC-ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCC-CcEEE
Confidence            999999999999999999  333 89999999977779999999999988899999999999999999999987 79999


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccC-----CCCccccchHHhHHhcCceEE-EEecceEEEcCCHHHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIEL-----RPTSIEKEVFPKIALEGKLFA-MVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~-----~~~~~~~d~l~~l~~~~~i~~-~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      +.|||..+.|+++.+|+|+|++.+++.+..     +...-..|+++.+++++.... ....|.|.|.+|++++++|+.+.
T Consensus       156 l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i  235 (286)
T COG1209         156 LEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFV  235 (286)
T ss_pred             eEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHH
Confidence            999999999999999999999999987752     122222578999999987544 44567999999999999999887


Q ss_pred             HHhh
Q 018060          234 LDSL  237 (361)
Q Consensus       234 l~~~  237 (361)
                      +...
T Consensus       236 ~~~~  239 (286)
T COG1209         236 RTVS  239 (286)
T ss_pred             HHHH
Confidence            7633

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=5e-42  Score=326.24  Aligned_cols=319  Identities=24%  Similarity=0.350  Sum_probs=215.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||+|+||++   ..||+|+|++|+|||+|+++++.+++++++++++++..+.+++++...      .+.+..+
T Consensus         6 ~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~------~~~~i~~   76 (456)
T PRK09451          6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE------PLNWVLQ   76 (456)
T ss_pred             ceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC------CcEEEEC
Confidence            5799999999999985   789999999999999999999999999999999998777788777531      2334445


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+...+.  +.+++++++||+  +...+++++++.|.+..  +.+++.+.+++..||++.. ++ ++|.
T Consensus        77 ~~~~Gt~~al~~a~~~l~--~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~~-~~-g~V~  150 (456)
T PRK09451         77 AEQLGTGHAMQQAAPFFA--DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRITR-EN-GKVV  150 (456)
T ss_pred             CCCCCcHHHHHHHHHhhc--cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEEe-cC-CeEE
Confidence            567799999999998874  234899999998  45567899988875443  4556666778888998754 44 8999


Q ss_pred             eeeecCCCC----CCCeEEEEEEEeCHhhHhh-cc---C---CCCccccchHHhHHhcC-ceEEEE------ecce--EE
Q 018060          159 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IE---L---RPTSIEKEVFPKIALEG-KLFAMV------LPGF--WM  218 (361)
Q Consensus       159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l~~-l~---~---~~~~~~~d~l~~l~~~~-~i~~~~------~~~~--~~  218 (361)
                      ++.|||...    .+++.++|+|+|+++.|.. ++   .   +...+..|+++.+++++ ++.+|.      +.|+  |.
T Consensus       151 ~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~  230 (456)
T PRK09451        151 GIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRL  230 (456)
T ss_pred             EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHH
Confidence            999998632    2468999999999987753 32   1   12234468999999886 677775      3555  67


Q ss_pred             EcCCHHHHHHHHHH--HHH-hhhhcccccccCC-cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEcc
Q 018060          219 DIGQPRDYITGLRL--YLD-SLRKKSSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR  294 (361)
Q Consensus       219 ~i~t~~dy~~a~~~--~l~-~~~~~~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~  294 (361)
                      |++++++|++++..  .+. ....     .++. ..+.+++.+++++.|+++|.|.++++||++|.|+++|.|.+|.|++
T Consensus       231 di~~~~~y~~~~~~~~~l~~~~~~-----~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~  305 (456)
T PRK09451        231 QLARLERVYQAEQAEKLLLAGVML-----RDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGD  305 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEE-----eCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcC
Confidence            89999999998742  211 1100     0111 1123344455555555555554445555555555555555555555


Q ss_pred             CcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060          295 GVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       295 ~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      +|.|++++.|.+++|++++.|++++.|.+++++|+++.|++++.+
T Consensus       306 ~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i  350 (456)
T PRK09451        306 DCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM  350 (456)
T ss_pred             CCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence            555555555555555555555555555444444444444444433

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.9e-41  Score=319.27  Aligned_cols=325  Identities=24%  Similarity=0.345  Sum_probs=250.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||.|+||++   .+||+|+|++|+|||+|+|+++.+.+ ++++|++++..+.+.+++..     ++.  +..+
T Consensus         1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~~~--~~~~   69 (448)
T PRK14357          1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----WVK--IFLQ   69 (448)
T ss_pred             CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----ccE--EEec
Confidence            8999999999999986   78999999999999999999999874 89999999887777777653     233  3445


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+.+++..  .++|++++||+  +...+++++++.|+++++++++++++.+++..|+.+..+ + +++ 
T Consensus        70 ~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~-g~v-  144 (448)
T PRK14357         70 EEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-G-GKY-  144 (448)
T ss_pred             CCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-C-CeE-
Confidence            6677999999999999842  34899999998  556679999999988888899998888888899998877 4 788 


Q ss_pred             eeeecCCCC----CCCeEEEEEEEeCHhhHhh-ccC---C---CCccccchHHhHHhcCceEEEEecce--EEEcCCHHH
Q 018060          159 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IEL---R---PTSIEKEVFPKIALEGKLFAMVLPGF--WMDIGQPRD  225 (361)
Q Consensus       159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l~~-l~~---~---~~~~~~d~l~~l~~~~~i~~~~~~~~--~~~i~t~~d  225 (361)
                      .+.|+|...    ...+.++|+|+|++++|.. ++.   .   ...+..|+++.+   .++..+...++  |.+++++++
T Consensus       145 ~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~  221 (448)
T PRK14357        145 RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQ  221 (448)
T ss_pred             EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHH
Confidence            888876532    1358999999999998644 331   1   112224666666   24777878787  667779999


Q ss_pred             HHHHHHHHHHh----hhhcccccccC-CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECC
Q 018060          226 YITGLRLYLDS----LRKKSSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  300 (361)
Q Consensus       226 y~~a~~~~l~~----~~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~  300 (361)
                      +..+...+...    +.......+++ .+.+++++.|++++.|+++++|++++.||++|+|+++|.|.+|+|+++|.|. 
T Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-  300 (448)
T PRK14357        222 LAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-  300 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-
Confidence            98776554332    11111222444 3578889999999999999999888999999999999999888899988885 


Q ss_pred             CCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEc
Q 018060          301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  345 (361)
Q Consensus       301 ~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~  345 (361)
                      .+.+.+++|++++.|++++.+.++++||++++|++++.+.++.++
T Consensus       301 ~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig  345 (448)
T PRK14357        301 RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG  345 (448)
T ss_pred             eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence            467778888888888888888777788887777777665444433

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=7.4e-41  Score=319.02  Aligned_cols=335  Identities=24%  Similarity=0.403  Sum_probs=262.2

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||.|+||++   .+||+|+|++|+|||+|+|+++.++++++++++++++.+++++++.+     +..  +..+
T Consensus         3 ~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~~~--~~~~   72 (458)
T PRK14354          3 RYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----RSE--FALQ   72 (458)
T ss_pred             ceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----CcE--EEEc
Confidence            4799999999999986   79999999999999999999999999999999999988888888754     222  3335


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+++++... +++++++.||.  +...+++++++.|.+.++++++++...+++..|+.+..+++ ++|.
T Consensus        73 ~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~-~~V~  150 (458)
T PRK14354         73 EEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVE  150 (458)
T ss_pred             CCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCC-CCEE
Confidence            55678999999999988432 24799999997  44567899999998777778887777777778888877775 8999


Q ss_pred             eeeecCCC----CCCCeEEEEEEEeCHhh-HhhccC------CCCccccchHHhHHhcC-ceEEEEecce--EEEcCCHH
Q 018060          159 KFVEKPKL----FVGNKINAGIYLLNPAV-LDRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR  224 (361)
Q Consensus       159 ~~~ek~~~----~~~~~~~~Giyi~~~~~-l~~l~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~~--~~~i~t~~  224 (361)
                      .+.|||..    ....+.++|+|+|+++. ++.++.      +......|+++.+++.+ ++.++.++++  |.++++++
T Consensus       151 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~  230 (458)
T PRK14354        151 KIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRV  230 (458)
T ss_pred             EEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHH
Confidence            99998742    23457899999999874 454421      11222357788887665 5888988865  55778999


Q ss_pred             HHHHHHHHHHHhhhhcc----cccccC-CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060          225 DYITGLRLYLDSLRKKS----SLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  299 (361)
Q Consensus       225 dy~~a~~~~l~~~~~~~----~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~  299 (361)
                      ||..++..+........    ...+.+ .+.+.+++.|++++.|+++++|++++.||++|.|++++.|.+++|+++|.|+
T Consensus       231 Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~  310 (458)
T PRK14354        231 ALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT  310 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEE
Confidence            99998776554333211    122444 4678889999999999999999889999999999999999999999999998


Q ss_pred             CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060          300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~  348 (361)
                       ++.+.+++||+++.||+++.|.++++||+++.+++++.+.++.+.+++
T Consensus       311 -~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~  358 (458)
T PRK14354        311 -NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT  358 (458)
T ss_pred             -EEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCC
Confidence             467888899999999998888877888888888888777655554443

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=7.4e-40  Score=311.46  Aligned_cols=334  Identities=18%  Similarity=0.297  Sum_probs=256.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||+|+||++   ..||+|+|++|+|||+|+|++|.+++++++++++++..+.+.+++.+..   +  +.+..+
T Consensus         2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~--i~~v~~   73 (450)
T PRK14360          2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP---G--LEFVEQ   73 (450)
T ss_pred             ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC---C--eEEEEe
Confidence            5789999999999987   7899999999999999999999999999999999988777888876421   2  333445


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ....|++++++.+++.+...+ +++++++||.  +...+++++++.|++.++..+++..+..++..|+.+..+++ ++|.
T Consensus        74 ~~~~G~~~sv~~~~~~l~~~~-~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~-g~v~  151 (450)
T PRK14360         74 QPQLGTGHAVQQLLPVLKGFE-GDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVE  151 (450)
T ss_pred             CCcCCcHHHHHHHHHHhhccC-CcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCC-CCEE
Confidence            556789999999998885322 3799999999  45667999999998888777777777778888999888876 8999


Q ss_pred             eeeecCC----CCCCCeEEEEEEEeCHhhHhhccCC-------CCccccchHHhHHhcCceEEEEecce--EEEcCCHHH
Q 018060          159 KFVEKPK----LFVGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEGKLFAMVLPGF--WMDIGQPRD  225 (361)
Q Consensus       159 ~~~ek~~----~~~~~~~~~Giyi~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~~i~~~~~~~~--~~~i~t~~d  225 (361)
                      ++.|||.    ...+++.++|+|+|+++.|..+.+.       ...+..|.++.+..   +..+.+.++  +..+++++|
T Consensus       152 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~---~~~~~v~~~~~~~~i~~~~d  228 (450)
T PRK14360        152 QIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDP---VMAVEVEDYQEINGINDRKQ  228 (450)
T ss_pred             EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhh---ceEEecCCHHHhhcCCCHHH
Confidence            9999975    2346789999999999877554211       11222355555532   445556654  456999999


Q ss_pred             HHHHHHHHHHhhhh----cccccccCCc-EEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECC
Q 018060          226 YITGLRLYLDSLRK----KSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  300 (361)
Q Consensus       226 y~~a~~~~l~~~~~----~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~  300 (361)
                      +..+...+......    .....+++.. .+.+++.+++++.|++++.|++++.||++|.|++++.|.++.|+++|.|+ 
T Consensus       229 l~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-  307 (450)
T PRK14360        229 LAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-  307 (450)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-
Confidence            98887765543332    1222455554 57888899999999999999888999999999999999888888888885 


Q ss_pred             CCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060          301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       301 ~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~  348 (361)
                      ++++.+++|++++.|++++.|.++++||+++.|++++.+.++.+..++
T Consensus       308 ~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~  355 (450)
T PRK14360        308 YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGS  355 (450)
T ss_pred             eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCc
Confidence            567778888888888888888777888888888887777554444433

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=100.00  E-value=1e-39  Score=283.56  Aligned_cols=233  Identities=74%  Similarity=1.241  Sum_probs=209.2

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |++||||||+|+||+|+|...||+|+|++|+|||+|+++++..+|++++++++++..+.+.+++.+|....++++.+..+
T Consensus         1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (233)
T cd06425           1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE   80 (233)
T ss_pred             CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence            89999999999999999999999999999999999999999999999999999999899999998775556777777666


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ..+.|++++++.+...+... .+++++++||++++.++.++++.|+++++++++++.+.+++..||++..++++++|.++
T Consensus        81 ~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~  159 (233)
T cd06425          81 TEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERF  159 (233)
T ss_pred             CCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEE
Confidence            67789999999999988532 23799999999999999999999999988899998888778889999998733899999


Q ss_pred             eecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060          161 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  234 (361)
Q Consensus       161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l  234 (361)
                      .|||....+++.++|+|+|++++++.+.....+...++++.+++++++.+|+++|+|.|+++|++|+++++.+|
T Consensus       160 ~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l  233 (233)
T cd06425         160 VEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL  233 (233)
T ss_pred             EECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence            99998777889999999999999999877666666789999999999999999999999999999999988654

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=100.00  E-value=8e-38  Score=277.75  Aligned_cols=229  Identities=25%  Similarity=0.448  Sum_probs=192.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhh------------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------   68 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~------------   68 (361)
                      |+|||||||+|+||+|+|..+||+|+|++|+|+|+|+++.+.++|+++|++++++..+.+.+|+....            
T Consensus         4 mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~   83 (297)
T TIGR01105         4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR   83 (297)
T ss_pred             eEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcch
Confidence            79999999999999999999999999999999999999999999999999999999899999986411            


Q ss_pred             ---------hccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHHcCCc
Q 018060           69 ---------AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE  131 (361)
Q Consensus        69 ---------~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--------~~l~~~~~~~~~~~~~  131 (361)
                               ..+++++.+..+.++.|++++++++.+++.  ++ +|+++.||.+++        .++.++++.|.++++.
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~--~~-~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~  160 (297)
T TIGR01105        84 QLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG--DN-PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRS  160 (297)
T ss_pred             hhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC--CC-CEEEEECCeeccccccccchhHHHHHHHHHHHhCCc
Confidence                     023567888888899999999999999993  33 799999999876        4789999999877765


Q ss_pred             eEEEEEEccCCCCceeEEEc----CCCC---eEeeeeecCCCC---CCCeEEEEEEEeCHhhHhhccCC-C----Ccccc
Q 018060          132 ASIMVTKVDEPSKYGVVVME----ESTG---KVEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELR-P----TSIEK  196 (361)
Q Consensus       132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~~~---~~~~~~~Giyi~~~~~l~~l~~~-~----~~~~~  196 (361)
                      ++++....+++..||++..+    ++ +   +|.++.|||..+   .++++++|+|+|++++++.++.. +    .....
T Consensus       161 ~~~~~~~~~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~lt  239 (297)
T TIGR01105       161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLT  239 (297)
T ss_pred             EEEEEEcCCCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHH
Confidence            54444434578899999984    33 5   468999998643   47899999999999999988532 1    12224


Q ss_pred             chHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          197 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       197 d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      |+++.++++++++++.++|+|+|+++|++|++++..+
T Consensus       240 d~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             HHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence            8899999999999999999999999999999997654

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=100.00  E-value=7e-38  Score=275.81  Aligned_cols=230  Identities=42%  Similarity=0.716  Sum_probs=199.8

Q ss_pred             EEEEecC--CCcccCCCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEec
Q 018060            3 ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         3 avIla~G--~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~-~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |||||||  +|+||+|+|..+||+|+|++|+|||+|+|+++.+ +|+++++|++++..+.+.+|+.+..+..++.+.+..
T Consensus         1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~   80 (257)
T cd06428           1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ   80 (257)
T ss_pred             CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence            6899999  8999999999999999999999999999999999 699999999999888999999875445567777777


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeEEEcCCCCeE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKV  157 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~~~~~~v  157 (361)
                      +.++.|++++++.+.+.+....+++|++++||++++.++.++++.|+++++++++++.+.  +++..||++..++++++|
T Consensus        81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v  160 (257)
T cd06428          81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV  160 (257)
T ss_pred             CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence            777889999999999988533344899999999999999999999999888888888775  457789999888333899


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeCHhhHhhccCC---------------------CCccccchHHhHHhcCceEEEEecce
Q 018060          158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---------------------PTSIEKEVFPKIALEGKLFAMVLPGF  216 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~---------------------~~~~~~d~l~~l~~~~~i~~~~~~~~  216 (361)
                      .++.|||....++++++|+|+|++++++.+...                     ..++..|+++.++.++++++|+++|+
T Consensus       161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~  240 (257)
T cd06428         161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF  240 (257)
T ss_pred             EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCe
Confidence            999999987788899999999999999877521                     11234689999999999999999999


Q ss_pred             EEEcCCHHHHHHHHHH
Q 018060          217 WMDIGQPRDYITGLRL  232 (361)
Q Consensus       217 ~~~i~t~~dy~~a~~~  232 (361)
                      |.|++++++|+++|+.
T Consensus       241 w~dig~~~~~~~a~~~  256 (257)
T cd06428         241 WSQIKTAGSAIYANRL  256 (257)
T ss_pred             eecCCCHHHHHhHhhc
Confidence            9999999999999974

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=100.00  E-value=4.2e-37  Score=270.02  Aligned_cols=232  Identities=40%  Similarity=0.728  Sum_probs=198.5

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcc-cChHHHHHHHHHhhhccCcEEEEec
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~-~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      ||||||||+|+||+|+|...||+|+|++|+ |||+|+|+++.++|++++++++. +..+.+.+++++ ...+++++.+..
T Consensus         1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~-~~~~~~~i~~i~   79 (248)
T PF00483_consen    1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS-GYKFGVKIEYIV   79 (248)
T ss_dssp             EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT-SGGGTEEEEEEE
T ss_pred             CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccc-cccccccceeee
Confidence            799999999999999999999999999999 99999999999999999655555 677889999987 344567888888


Q ss_pred             CCCCCCCchHHHHHHhhccCCC-CCcEEEEeCCeeeccCHHHHHHHHHHcCC--ceEEEEEEccCCCCceeEEEcCCCCe
Q 018060           80 ETEPLGTAGPLALARDKLIDDT-GEPFFVLNSDVISEYPFAEMIEFHKAHGG--EASIMVTKVDEPSKYGVVVMEESTGK  156 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~-~~~~lv~~~D~~~~~~l~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~v~~~~~~~~  156 (361)
                      ++.+.|++++++.+...+.... +++|++++||+++..++.++++.|.++++  .+++...+.++++.||++..+++ ++
T Consensus        80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~  158 (248)
T PF00483_consen   80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDED-GR  158 (248)
T ss_dssp             ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETT-SE
T ss_pred             cccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccc-ee
Confidence            8888899999999999995432 23599999999999999999999999987  45666667778889999999986 89


Q ss_pred             EeeeeecCCCCC-CCeEEEEEEEeCHhhHhhcc------CCCCccccchHHhHHhcCc-eEEEEecc--eEEEcCCHHHH
Q 018060          157 VEKFVEKPKLFV-GNKINAGIYLLNPAVLDRIE------LRPTSIEKEVFPKIALEGK-LFAMVLPG--FWMDIGQPRDY  226 (361)
Q Consensus       157 v~~~~ek~~~~~-~~~~~~Giyi~~~~~l~~l~------~~~~~~~~d~l~~l~~~~~-i~~~~~~~--~~~~i~t~~dy  226 (361)
                      |.++.|||.... ++++++|+|+|++++|+.+.      .+...+..|+++.++.++. +.++..++  +|+|+++|++|
T Consensus       159 V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~  238 (248)
T PF00483_consen  159 VIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDY  238 (248)
T ss_dssp             EEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHH
T ss_pred             EEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHH
Confidence            999999999766 89999999999999998872      2344555789999999886 44778888  79999999999


Q ss_pred             HHHHHHHHH
Q 018060          227 ITGLRLYLD  235 (361)
Q Consensus       227 ~~a~~~~l~  235 (361)
                      ++|++.+++
T Consensus       239 ~~a~~~~~~  247 (248)
T PF00483_consen  239 LEANMDLLN  247 (248)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            999987763

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=100.00  E-value=1.6e-36  Score=264.57  Aligned_cols=228  Identities=27%  Similarity=0.421  Sum_probs=194.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |+|||||||+|+||+|+|..+||+|+|++|+|||+|+|+++.++|++++++++++ ..+.+.+++.+ .+.+++++.+..
T Consensus         1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~~~   79 (240)
T cd02538           1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITYAV   79 (240)
T ss_pred             CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEEee
Confidence            8999999999999999999999999999999999999999999999999998876 45678888865 344567777766


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      +....|++++++.+.+.+.  . +++++++||++ ...++.++++.|.++++++++++.+..++..||.+.++++ ++|.
T Consensus        80 ~~~~~G~~~al~~a~~~~~--~-~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-g~v~  155 (240)
T cd02538          80 QPKPGGLAQAFIIGEEFIG--D-DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVL  155 (240)
T ss_pred             CCCCCCHHHHHHHHHHhcC--C-CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCC-CcEE
Confidence            6667899999999999883  2 37999999984 4567999999998878888888888878888999999976 8999


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcCceEEEEec--ceEEEcCCHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLR  231 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~i~~~~~~--~~~~~i~t~~dy~~a~~  231 (361)
                      ++.|||....+++.++|+|+|++++++.++..     ......++++.+++++++.++.++  |+|.|+++|++|+++++
T Consensus       156 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~  235 (240)
T cd02538         156 SIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN  235 (240)
T ss_pred             EEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHH
Confidence            99999987778899999999999999877421     112224889999998888887776  99999999999999998


Q ss_pred             HH
Q 018060          232 LY  233 (361)
Q Consensus       232 ~~  233 (361)
                      .+
T Consensus       236 ~~  237 (240)
T cd02538         236 FV  237 (240)
T ss_pred             HH
Confidence            54

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK10122 GalU regulator GalF; Provisional

Probab=100.00  E-value=4.7e-36  Score=267.25  Aligned_cols=229  Identities=25%  Similarity=0.461  Sum_probs=193.2

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh-----------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE-----------   68 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~-----------   68 (361)
                      |+|||||||+|+||+|+|..+||+|+|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.. |.           
T Consensus         4 mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~   83 (297)
T PRK10122          4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR   83 (297)
T ss_pred             eEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchh
Confidence            789999999999999999999999999999999999999999999999999999999999999863 11           


Q ss_pred             ---------hccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHHcCCc
Q 018060           69 ---------AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE  131 (361)
Q Consensus        69 ---------~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--------~~l~~~~~~~~~~~~~  131 (361)
                               ..+++++.+..+.++.|++++++.+.+++  .++ +|+++.||.++.        .++.++++.|.+++++
T Consensus        84 ~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l--~~~-~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~  160 (297)
T PRK10122         84 QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAI--GDN-PFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS  160 (297)
T ss_pred             hhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHc--CCC-CEEEEECCeeccCccccccchhHHHHHHHHHHhCCc
Confidence                     01356777888888899999999999998  333 799999999875        4799999999887766


Q ss_pred             eEEEEEEccCCCCceeEEEc----CCCC---eEeeeeecCCCC---CCCeEEEEEEEeCHhhHhhccCC-----CCcccc
Q 018060          132 ASIMVTKVDEPSKYGVVVME----ESTG---KVEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELR-----PTSIEK  196 (361)
Q Consensus       132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~~~---~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~  196 (361)
                      .+++....+++..||.+..+    ++ +   +|.++.|||...   .++++++|+|+|++++++.+...     ......
T Consensus       161 ~~~~~~~~~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt  239 (297)
T PRK10122        161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT  239 (297)
T ss_pred             EEEEEECCCCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence            55554444678899999986    23 4   789999998743   37899999999999999988542     112224


Q ss_pred             chHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          197 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       197 d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      |+++.++.++++.+|.++|+|+|+++|++|++++..+
T Consensus       240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~  276 (297)
T PRK10122        240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence            8899999999999999999999999999999999876

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=100.00  E-value=4.7e-36  Score=265.78  Aligned_cols=229  Identities=22%  Similarity=0.387  Sum_probs=196.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |+|||||||.|+||+|+|...||+|+|++|||||+|+|+++..+|+++|++++.+ ..+.+++++.+ ...+++++.+..
T Consensus         4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~   82 (292)
T PRK15480          4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKV   82 (292)
T ss_pred             eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEE
Confidence            7899999999999999999999999999999999999999999999999987765 55778888875 455788888888


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      +..+.|+++++..+.+++.  ++ +++++.||. ++..++.++++.|.+++..+++++.+..+++.||++..|++ ++|.
T Consensus        83 q~~~~Gta~Al~~a~~~i~--~~-~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~-g~v~  158 (292)
T PRK15480         83 QPSPDGLAQAFIIGEEFIG--GD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAI  158 (292)
T ss_pred             CCCCCCHHHHHHHHHHHhC--CC-CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCC-CcEE
Confidence            8889999999999999983  33 688889997 45788999999998877788888888889999999999976 8999


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCC-C----CccccchHHhHHhcCceEE-EEecc-eEEEcCCHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-P----TSIEKEVFPKIALEGKLFA-MVLPG-FWMDIGQPRDYITGLR  231 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-~----~~~~~d~l~~l~~~~~i~~-~~~~~-~~~~i~t~~dy~~a~~  231 (361)
                      ++.|||..+.+++.++|+|+|++++++.+..- +    .....|+++.+++++++.. +...| .|.|++|+++|.+++.
T Consensus       159 ~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~  238 (292)
T PRK15480        159 SLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN  238 (292)
T ss_pred             EEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHH
Confidence            99999988889999999999999999877421 1    1122578888888888654 45567 5999999999999998


Q ss_pred             HHH
Q 018060          232 LYL  234 (361)
Q Consensus       232 ~~l  234 (361)
                      .+.
T Consensus       239 ~~~  241 (292)
T PRK15480        239 FIA  241 (292)
T ss_pred             HHH
Confidence            775

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=100.00  E-value=1.2e-35  Score=263.02  Aligned_cols=228  Identities=23%  Similarity=0.406  Sum_probs=195.5

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      +|||||||.|+||+|+|...||+|+|++|+|||+|+|+.+..+|+++|+|++.+ +.+.+++++.+ +..+++++.+..+
T Consensus         1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q   79 (286)
T TIGR01207         1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQ   79 (286)
T ss_pred             CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEc
Confidence            689999999999999999999999999999999999999999999999988864 66778888875 4567888988888


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ..+.|++++++.+.+++.  + ++++++.||. ++..++.++++.|.+.+.++++++.+..++..||++..|++ ++|.+
T Consensus        80 ~~~~Gta~al~~a~~~l~--~-~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-g~V~~  155 (286)
T TIGR01207        80 PSPDGLAQAFIIGEDFIG--G-DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAIS  155 (286)
T ss_pred             cCCCCHHHHHHHHHHHhC--C-CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCC-CeEEE
Confidence            889999999999999983  3 3788889997 56778999999998877788888888889999999999976 89999


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcCceEEEEe-cce-EEEcCCHHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVL-PGF-WMDIGQPRDYITGLRL  232 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~i~~~~~-~~~-~~~i~t~~dy~~a~~~  232 (361)
                      +.|||....+++.++|+|+|++++++.+..-     ......|+++.+++++.+....+ .|+ |.|++||++|++++..
T Consensus       156 i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~  235 (286)
T TIGR01207       156 IEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNF  235 (286)
T ss_pred             EEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHH
Confidence            9999987788999999999999998876421     12222488999999887766665 565 9999999999999876


Q ss_pred             HH
Q 018060          233 YL  234 (361)
Q Consensus       233 ~l  234 (361)
                      +.
T Consensus       236 ~~  237 (286)
T TIGR01207       236 IQ  237 (286)
T ss_pred             HH
Confidence            64

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=100.00  E-value=3.3e-35  Score=257.52  Aligned_cols=226  Identities=30%  Similarity=0.507  Sum_probs=192.8

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhc-cCcEE-----
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-LGIKI-----   75 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~-~~~~i-----   75 (361)
                      +|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.++... .++++     
T Consensus         1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   80 (254)
T TIGR02623         1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN   80 (254)
T ss_pred             CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence            689999999999999999999999999999999999999999999999999999888999998764211 11222     


Q ss_pred             --------------EEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccC
Q 018060           76 --------------ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE  141 (361)
Q Consensus        76 --------------~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~  141 (361)
                                    .+..+.++.|++++++.+.+.+.   +++|++++||+++..++.++++.|.+.+++++++..  .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~  155 (254)
T TIGR02623        81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QP  155 (254)
T ss_pred             ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cC
Confidence                          22334456799999999999983   238999999999999999999999988888887654  46


Q ss_pred             CCCceeEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcC
Q 018060          142 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG  221 (361)
Q Consensus       142 ~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~  221 (361)
                      +..||.+.+++  ++|.++.|||... ++++++|+|+|++++|+.+.....++..|+++.++.+++++++.++|+|.|++
T Consensus       156 ~~~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIg  232 (254)
T TIGR02623       156 PGRFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMD  232 (254)
T ss_pred             CCcccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCC
Confidence            67899988875  6899999998643 67899999999999998887665566779999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 018060          222 QPRDYITGLRLYLD  235 (361)
Q Consensus       222 t~~dy~~a~~~~l~  235 (361)
                      ||++|.++++.+.+
T Consensus       233 t~~~~~~~~~~~~~  246 (254)
T TIGR02623       233 TLRDKNYLEELWES  246 (254)
T ss_pred             chHHHHHHHHHHHc
Confidence            99999999886654

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=100.00  E-value=2.3e-34  Score=250.66  Aligned_cols=229  Identities=33%  Similarity=0.563  Sum_probs=197.5

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++..+.+++++.+. .+++.++.+..+
T Consensus         1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~~~   79 (236)
T cd04189           1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYILQ   79 (236)
T ss_pred             CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEEEC
Confidence            8999999999999999999999999999999999999999999999999999999888999998762 234667777777


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ..+.|++++++.+...+.  . +++++++||+++..++.++++.|.+++.++++++.+..++..|+.+..++  ++|.++
T Consensus        80 ~~~~g~~~sl~~a~~~i~--~-~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~  154 (236)
T cd04189          80 EEPLGLAHAVLAARDFLG--D-EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRL  154 (236)
T ss_pred             CCCCChHHHHHHHHHhcC--C-CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC--CeEEEE
Confidence            777899999999999883  2 37999999999999999999999888888888888877778899888775  699999


Q ss_pred             eecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060          161 VEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL  234 (361)
Q Consensus       161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~~l  234 (361)
                      .|||....+.+.++|+|+|++++++.++..     ......++++.+++++ ++.++.++++|.+++||+||.++++.++
T Consensus       155 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l  234 (236)
T cd04189         155 VEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL  234 (236)
T ss_pred             EECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence            999876667889999999999999877421     1122257888888775 4899999999999999999999998877


Q ss_pred             H
Q 018060          235 D  235 (361)
Q Consensus       235 ~  235 (361)
                      +
T Consensus       235 ~  235 (236)
T cd04189         235 D  235 (236)
T ss_pred             h
Confidence            5

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=100.00  E-value=1.5e-34  Score=249.12  Aligned_cols=218  Identities=28%  Similarity=0.477  Sum_probs=188.1

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      +|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++|++++++..+.+.+++.+  ..+++.+.+..+.
T Consensus         1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~   78 (221)
T cd06422           1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEP   78 (221)
T ss_pred             CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999988999999876  3457777776665


Q ss_pred             -CCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHH--cCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           82 -EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKA--HGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        82 -~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                       ...|++++++.++..+.  . +++++++||+++..++.++++.|.+  .+..+++...+.+++..+|.+..+++ ++|.
T Consensus        79 ~~~~g~~~~l~~~~~~~~--~-~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~v~  154 (221)
T cd06422          79 DELLETGGGIKKALPLLG--D-EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLR  154 (221)
T ss_pred             CcccccHHHHHHHHHhcC--C-CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCC-CcEe
Confidence             57799999999999983  2 3899999999999999999999873  45556666666667778899988876 8999


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG  229 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a  229 (361)
                      .+.|+|..   ++.++|+|+|+++++..+... .....|+++.+++++++.++.++|+|.|+++|++|.++
T Consensus       155 ~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~-~~~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a  221 (221)
T cd06422         155 RGGGGAVA---PFTFTGIQILSPELFAGIPPG-KFSLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA  221 (221)
T ss_pred             ecccCCCC---ceEEEEEEEEcHHHHhhCCcC-cccHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence            99888653   789999999999999987644 23335889999999999999999999999999999864

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=100.00  E-value=4.8e-34  Score=254.69  Aligned_cols=229  Identities=27%  Similarity=0.375  Sum_probs=191.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH---hh----hc---
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE---FE----AK---   70 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~---~~----~~---   70 (361)
                      |+|||+|||.|+||+|+|..+||+|+|++|+|+|+|+|+++.++|+++|+|++++..+.+.+|+..   |.    ++   
T Consensus         9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~   88 (302)
T PRK13389          9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR   88 (302)
T ss_pred             eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence            789999999999999999999999999999999999999999999999999999998999999964   11    00   


Q ss_pred             -----------cCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHHcCCc
Q 018060           71 -----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE  131 (361)
Q Consensus        71 -----------~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--------~~l~~~~~~~~~~~~~  131 (361)
                                 .+..+.+..+....|++++++.+.+++  .+ ++|++++||.+++        .++.++++.|.+++++
T Consensus        89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~--~~-~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~  165 (302)
T PRK13389         89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVV--GD-EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS  165 (302)
T ss_pred             HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHc--CC-CCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence                       023455666677789999999999887  33 3899999999764        6899999999887765


Q ss_pred             eEEEEEEccCCCCceeEEEcC------CCCeEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCC-----Cccccch
Q 018060          132 ASIMVTKVDEPSKYGVVVMEE------STGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEV  198 (361)
Q Consensus       132 ~~i~~~~~~~~~~~~~v~~~~------~~~~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~-----~~~~~d~  198 (361)
                       ++++.+.+++..||.+..+.      ++++|.++.|||.  ...++++++|+|+|++++++.++...     ..+..|+
T Consensus       166 -tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~  244 (302)
T PRK13389        166 -QIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDA  244 (302)
T ss_pred             -EEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHH
Confidence             67777778888999998763      1258999999997  34578999999999999998875322     1333588


Q ss_pred             HHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          199 FPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       199 l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      ++.+++++++.+|.++|+|.|+++|++|++++..+
T Consensus       245 i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             HHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence            99999989999999999999999999999998765

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=100.00  E-value=1.1e-33  Score=244.36  Aligned_cols=222  Identities=34%  Similarity=0.622  Sum_probs=192.4

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      |||||||+|+||+|+|...||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+++.+. ..++.++.+..+..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~   79 (223)
T cd06915           1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIEPE   79 (223)
T ss_pred             CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEECCC
Confidence            69999999999999999999999999999999999999999999999999998888888888742 12355565566667


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeeeee
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE  162 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e  162 (361)
                      ..|++++++.+++.+  .+ +++++++||+++..++.++++.|++.+.++++++.+.+++..++.+.++++ ++|..+.|
T Consensus        80 ~~G~~~~l~~a~~~~--~~-~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e  155 (223)
T cd06915          80 PLGTGGAIKNALPKL--PE-DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVE  155 (223)
T ss_pred             CCcchHHHHHHHhhc--CC-CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCC-CeEEEEEe
Confidence            789999999999888  22 389999999988889999999998877888888888777778998888876 89999999


Q ss_pred             cCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHH
Q 018060          163 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG  229 (361)
Q Consensus       163 k~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a  229 (361)
                      ||....+.+.++|+|+|++++++.+......+..++++.++.++++.+++++++|.|+++++||.++
T Consensus       156 k~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a  222 (223)
T cd06915         156 KGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA  222 (223)
T ss_pred             CCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence            9876667889999999999999988655555567899999988899999999999999999999886

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=100.00  E-value=9.4e-34  Score=251.16  Aligned_cols=229  Identities=28%  Similarity=0.419  Sum_probs=188.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh-----hc----
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE-----AK----   70 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~-----~~----   70 (361)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+|+.+ |.     +.    
T Consensus         1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (267)
T cd02541           1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT   80 (267)
T ss_pred             CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence            899999999999999999999999999999999999999999999999999999998889988863 11     00    


Q ss_pred             ----------cCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHHcCCceEEEEE
Q 018060           71 ----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVT  137 (361)
Q Consensus        71 ----------~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~---~l~~~~~~~~~~~~~~~i~~~  137 (361)
                                .+.++.+..+..+.|++++++.+.+.+.  . +++++++||.++..   ++.++++.|.+.++. ++++.
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~  156 (267)
T cd02541          81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--D-EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVE  156 (267)
T ss_pred             HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--C-CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEE
Confidence                      1346666677777899999999999984  2 38999999997654   499999999876654 34444


Q ss_pred             Ec--cCCCCceeEEEcCC---CCeEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhc
Q 018060          138 KV--DEPSKYGVVVMEES---TGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALE  205 (361)
Q Consensus       138 ~~--~~~~~~~~v~~~~~---~~~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~  205 (361)
                      ..  +++..||++.++++   +++|.++.|||.  ...+.++++|+|+|++++|+.+...     ......++++.++++
T Consensus       157 ~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~  236 (267)
T cd02541         157 EVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEE  236 (267)
T ss_pred             EcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhc
Confidence            43  35678999998852   258999999986  3567889999999999999888542     122334789999988


Q ss_pred             CceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          206 GKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       206 ~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      ++++++.++|+|.|+++|++|++++..+
T Consensus       237 ~~v~~~~~~g~w~digt~~~y~~a~~~~  264 (267)
T cd02541         237 EPVYAYVFEGKRYDCGNKLGYLKATVEF  264 (267)
T ss_pred             CCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence            8999999999999999999999999765

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=100.00  E-value=2.4e-33  Score=246.32  Aligned_cols=226  Identities=30%  Similarity=0.522  Sum_probs=189.7

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhc-cCcEEEE----
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-LGIKIIC----   77 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~-~~~~i~~----   77 (361)
                      |||||||+|+||+|+|...||+|+|++|+|||+|+++.+.++|+++|++++++..+.+++++.+..+. ..+++.+    
T Consensus         1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   80 (253)
T cd02524           1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR   80 (253)
T ss_pred             CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence            69999999999999999999999999999999999999999999999999999999999999864221 1122211    


Q ss_pred             ---ec------------CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCC
Q 018060           78 ---SQ------------ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP  142 (361)
Q Consensus        78 ---~~------------~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~  142 (361)
                         ..            +....|++++++.+.+.+.  +.++|++++||++++.++.++++.|..++++++++...  .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~--~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--~~  156 (253)
T cd02524          81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG--DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--PP  156 (253)
T ss_pred             eeeecccccccceeecccCcccccHHHHHHHHHhcC--CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--CC
Confidence               11            1224678999999999983  21389999999999999999999998888888776543  45


Q ss_pred             CCceeEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCC
Q 018060          143 SKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQ  222 (361)
Q Consensus       143 ~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t  222 (361)
                      ..|+.+.++++ ++|..+.|||... +...++|+|+|++++++.+.....++..|+++.++++++++++.++|+|.++++
T Consensus       157 ~~~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t  234 (253)
T cd02524         157 GRFGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDT  234 (253)
T ss_pred             CcccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcC
Confidence            67899998886 8999999998754 568999999999999998865545555789999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 018060          223 PRDYITGLRLYL  234 (361)
Q Consensus       223 ~~dy~~a~~~~l  234 (361)
                      +++|.+++..+.
T Consensus       235 ~~~~~~~~~~~~  246 (253)
T cd02524         235 LRDKQTLEELWN  246 (253)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987664

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=100.00  E-value=4.2e-33  Score=246.11  Aligned_cols=225  Identities=26%  Similarity=0.407  Sum_probs=183.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh--h--------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE--A--------   69 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~--~--------   69 (361)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+|+.+ |.  .        
T Consensus         1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (260)
T TIGR01099         1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE   80 (260)
T ss_pred             CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence            899999999999999999999999999999999999999999999999999999998999999863 10  0        


Q ss_pred             ---------ccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHHcCCceEEEEE
Q 018060           70 ---------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVT  137 (361)
Q Consensus        70 ---------~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~---~l~~~~~~~~~~~~~~~i~~~  137 (361)
                               .....+.+..+..+.|++++++.+.+.+  .+ +++++++||+++..   ++.++++.|.+++++. +++.
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~--~~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~  156 (260)
T TIGR01099        81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFV--GD-EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE  156 (260)
T ss_pred             HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhh--CC-CCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence                     0013455555667789999999999988  33 38999999997653   6999999998877764 4443


Q ss_pred             Ec--cCCCCceeEEEcC---CCCeEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCC-----CccccchHHhHHhc
Q 018060          138 KV--DEPSKYGVVVMEE---STGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALE  205 (361)
Q Consensus       138 ~~--~~~~~~~~v~~~~---~~~~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~-----~~~~~d~l~~l~~~  205 (361)
                      ..  +++..||++..+.   ++++|..+.|||.  ...++++++|+|+|++++|+.+....     .....|+++.++++
T Consensus       157 ~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~  236 (260)
T TIGR01099       157 EVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEK  236 (260)
T ss_pred             ECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhc
Confidence            33  4567899998862   2269999999985  34567899999999999998885321     12234789999998


Q ss_pred             CceEEEEecceEEEcCCHHHHHHH
Q 018060          206 GKLFAMVLPGFWMDIGQPRDYITG  229 (361)
Q Consensus       206 ~~i~~~~~~~~~~~i~t~~dy~~a  229 (361)
                      +++++|.++|+|.|+++|++|+++
T Consensus       237 ~~v~~~~~~g~w~digs~~~y~~a  260 (260)
T TIGR01099       237 ETVYAYKFKGKRYDCGSKLGYLKA  260 (260)
T ss_pred             CCEEEEEcceEEEeCCCHHHHhhC
Confidence            999999999999999999999874

Built to distinquish between the highly similar genes galU and galF

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=100.00  E-value=1.5e-32  Score=236.68  Aligned_cols=219  Identities=35%  Similarity=0.662  Sum_probs=185.0

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      |||||||+|+||+|+|...||+|+|++|+|||+|+++++..+++++++|++++..+.+++++.+. ..++.++.+..+..
T Consensus         1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~   79 (220)
T cd06426           1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVREDK   79 (220)
T ss_pred             CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEECCC
Confidence            69999999999999999999999999999999999999999999999999999888888888752 23456666666656


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeeeee
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE  162 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e  162 (361)
                      +.|+++++..+.+..    .+++++++||++...++.++++.|++++.++++++.+......|+++..++  ++|.++.|
T Consensus        80 ~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~~e  153 (220)
T cd06426          80 PLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEE  153 (220)
T ss_pred             CCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC--CEEEEEEE
Confidence            778999987776554    238999999999999999999999888888888877765566789888874  89999999


Q ss_pred             cCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHH
Q 018060          163 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       163 k~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                      ||..  +.+.++|+|+|++.+++.+.+.......++++.+++++ .+.+++++++|.+++||+||.+++
T Consensus       154 k~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~  220 (220)
T cd06426         154 KPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN  220 (220)
T ss_pred             CCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence            8754  56889999999999999886554333457889888775 599999999999999999998874

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=100.00  E-value=1.4e-32  Score=236.47  Aligned_cols=214  Identities=40%  Similarity=0.741  Sum_probs=187.7

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      |||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|++++++++++..+.+++++.+. ..++..+.+..+..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~   79 (217)
T cd04181           1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQEE   79 (217)
T ss_pred             CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeCCC
Confidence            69999999999999999999999999999999999999999999999999999888888888752 22456676666666


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeeeee
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE  162 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e  162 (361)
                      +.|++++++.+.+.+  .. +++++++||++++.++.++++.|.++++++++++.+.+++..|+++..+++ ++|.++.|
T Consensus        80 ~~g~~~al~~~~~~~--~~-~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e  155 (217)
T cd04181          80 PLGTAGAVRNAEDFL--GD-DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVE  155 (217)
T ss_pred             CCccHHHHHHhhhhc--CC-CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCC-CcEEEEEE
Confidence            789999999999988  22 389999999999999999999999888888988888877888999999886 89999999


Q ss_pred             cCCCCCCCeEEEEEEEeCHhhHhhccCCC---CccccchHHhHHhcCceEEEEecceEEEcC
Q 018060          163 KPKLFVGNKINAGIYLLNPAVLDRIELRP---TSIEKEVFPKIALEGKLFAMVLPGFWMDIG  221 (361)
Q Consensus       163 k~~~~~~~~~~~Giyi~~~~~l~~l~~~~---~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~  221 (361)
                      ||.....++.++|+|+|++++++.+....   .++..++++.++++.++++++++|+|.|++
T Consensus       156 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig  217 (217)
T cd04181         156 KPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG  217 (217)
T ss_pred             CCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence            98866678999999999999998876443   455678999999889999999999999985

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.7e-31  Score=221.44  Aligned_cols=230  Identities=29%  Similarity=0.433  Sum_probs=193.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHh----------h--
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF----------E--   68 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~----------~--   68 (361)
                      ++|||+|||.|+||.|.|+..||-|||+-+||+|+|+++.+.++|++++++|++.+...+.+||...          .  
T Consensus         5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~   84 (291)
T COG1210           5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKR   84 (291)
T ss_pred             cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHH
Confidence            4799999999999999999999999999999999999999999999999999999888888887630          0  


Q ss_pred             ------h--ccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHHcCCceEEEEE
Q 018060           69 ------A--KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVT  137 (361)
Q Consensus        69 ------~--~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~---~l~~~~~~~~~~~~~~~i~~~  137 (361)
                            +  ...+++.++.|.++.|.++|+++|.+++  +++ +|.|+.+|.+...   .++++++.+.+.+.+ ++.+.
T Consensus        85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~v--g~E-pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~  160 (291)
T COG1210          85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFV--GDE-PFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVE  160 (291)
T ss_pred             HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhc--CCC-ceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEE
Confidence                  1  1246788999999999999999999999  544 9999999996654   289999999888764 34444


Q ss_pred             Ec--cCCCCceeEE----EcCCCCeEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCCC----ccc-cchHHhHHh
Q 018060          138 KV--DEPSKYGVVV----MEESTGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRPT----SIE-KEVFPKIAL  204 (361)
Q Consensus       138 ~~--~~~~~~~~v~----~~~~~~~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~~----~~~-~d~l~~l~~  204 (361)
                      +.  ++.+.||++.    .+.+.-+|..+.|||.  ...|++.-.|.|+|++++|+.|+....    .++ .|.+..|++
T Consensus       161 ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~  240 (291)
T COG1210         161 EVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLK  240 (291)
T ss_pred             ECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHh
Confidence            44  6778899997    3332248999999996  467999999999999999999975422    222 478999999


Q ss_pred             cCceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060          205 EGKLFAMVLPGFWMDIGQPRDYITGLRLYL  234 (361)
Q Consensus       205 ~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l  234 (361)
                      ...++++.+.|..+|+++...|++++..+.
T Consensus       241 ~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~  270 (291)
T COG1210         241 KEPVLAYVFEGKRYDCGSKLGYIKANVEFA  270 (291)
T ss_pred             hCcEEEEEecccEEccCCcccHHHHHHHHH
Confidence            999999999999999999999999987654

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.97  E-value=1.7e-29  Score=216.67  Aligned_cols=180  Identities=22%  Similarity=0.345  Sum_probs=147.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhh---cc-CcEEE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA---KL-GIKII   76 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~---~~-~~~i~   76 (361)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|+++|+|++++..+.+++|+.++..   .+ +..+.
T Consensus         1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~   80 (217)
T cd04197           1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI   80 (217)
T ss_pred             CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence            689999999999999999999999999999999999999999999999999999988999999987321   11 23455


Q ss_pred             EecCCCCCCCchHHHHHH--hhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHc-----CCceEEEEEEccCCC------
Q 018060           77 CSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH-----GGEASIMVTKVDEPS------  143 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~--~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~-----~~~~~i~~~~~~~~~------  143 (361)
                      +..+.+..+++++++...  ..+   . ++|++++||+++..++.++++.|+++     ++.+++++.+.+++.      
T Consensus        81 ~~~~~~~~~~~~al~~~~~~~~~---~-~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~  156 (217)
T cd04197          81 IIMSEDCRSLGDALRDLDAKGLI---R-GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTG  156 (217)
T ss_pred             EEeCCCcCccchHHHHHhhcccc---C-CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCC
Confidence            556666778888886543  233   2 37999999999999999999999874     677888887765544      


Q ss_pred             CceeEEEcCCCCeEeeeeecCCCC--------------------CCCeEEEEEEEeCHhhH
Q 018060          144 KYGVVVMEESTGKVEKFVEKPKLF--------------------VGNKINAGIYLLNPAVL  184 (361)
Q Consensus       144 ~~~~v~~~~~~~~v~~~~ek~~~~--------------------~~~~~~~Giyi~~~~~l  184 (361)
                      .++++.+++++++|..+.|||...                    .+++.++|+|+|+++++
T Consensus       157 ~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         157 EEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             CceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence            257888887668999999997632                    27789999999999874

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.97  E-value=1.2e-28  Score=213.55  Aligned_cols=214  Identities=29%  Similarity=0.459  Sum_probs=166.8

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      |||||||+|+||+|+|...||+|+|++|+|||+|+++++.++|+++|+|++++..+.+.+++.++   .++.+.+.++..
T Consensus         1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~   77 (229)
T cd02523           1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYA   77 (229)
T ss_pred             CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchh
Confidence            69999999999999999999999999999999999999999999999999999888888888753   356666555555


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCC--CCceeEEEcCCCCeEeee
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP--SKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~~~v~~~  160 (361)
                      +.|++++++.+.+.+  .  +++++++||++++.   ++++.|.+++++.++++.+..+.  ..++... +++ +++..+
T Consensus        78 ~~g~~~s~~~~~~~~--~--~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~  148 (229)
T cd02523          78 ETNNIYSLYLARDFL--D--EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDL-DDA-GVLLGI  148 (229)
T ss_pred             hhCcHHHHHHHHHHc--C--CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeee-cCc-cceEee
Confidence            689999999999888  2  38999999998764   56677777777788777663222  2233222 222 688889


Q ss_pred             eecCCCCC-CCeEEEEEEEeCHhhHhhccC---------CCCccccchHHhHHhcCceE--EEEecceEEEcCCHHHHHH
Q 018060          161 VEKPKLFV-GNKINAGIYLLNPAVLDRIEL---------RPTSIEKEVFPKIALEGKLF--AMVLPGFWMDIGQPRDYIT  228 (361)
Q Consensus       161 ~ek~~~~~-~~~~~~Giyi~~~~~l~~l~~---------~~~~~~~d~l~~l~~~~~i~--~~~~~~~~~~i~t~~dy~~  228 (361)
                      .+||.... ..+.++|+|+|++++++.+.+         ....+..++++.++++..+.  .+.. ++|.|+++++||.+
T Consensus       149 ~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~  227 (229)
T cd02523         149 ISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLER  227 (229)
T ss_pred             cccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHh
Confidence            99886543 568999999999999876632         12334458899888744444  4444 89999999999987


Q ss_pred             H
Q 018060          229 G  229 (361)
Q Consensus       229 a  229 (361)
                      +
T Consensus       228 a  228 (229)
T cd02523         228 A  228 (229)
T ss_pred             h
Confidence            6

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.96  E-value=3.5e-28  Score=211.01  Aligned_cols=215  Identities=21%  Similarity=0.371  Sum_probs=166.6

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccCh---HHHHHHHHHhhhccCcEEEEec
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~---~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      +||||||+|+||+|+|...||+|+|++|+|||+|+|+.+.++|+++++++++...   ..+..++...  ..++.+.+. 
T Consensus         1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~~-   77 (231)
T cd04183           1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVEL-   77 (231)
T ss_pred             CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEEe-
Confidence            4899999999999999999999999999999999999999999999999887532   1222233221  124555433 


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      +..+.|++++++.+...+.  ..++|++++||+++..++.++++.|.+.+...++++... +...|+++..+++ ++|..
T Consensus        78 ~~~~~g~~~~l~~a~~~l~--~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~d~~-~~v~~  153 (231)
T cd04183          78 DGETLGAACTVLLAADLID--NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS-SHPRWSYVKLDEN-GRVIE  153 (231)
T ss_pred             CCCCCcHHHHHHHHHhhcC--CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC-CCCCeEEEEECCC-CCEEE
Confidence            4457899999999999883  224899999999999999888888877666666666555 5567999988876 89999


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHh-hH-hhccC--------CCCccccchHHhHHhcC-ceEEEEe-cceEEEcCCHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPA-VL-DRIEL--------RPTSIEKEVFPKIALEG-KLFAMVL-PGFWMDIGQPRDY  226 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~-~l-~~l~~--------~~~~~~~d~l~~l~~~~-~i~~~~~-~~~~~~i~t~~dy  226 (361)
                      +.||+.  .+.+.++|+|+|+++ .+ +.+.+        +...+..++++.+++++ ++.++.+ +++|.|+++|+||
T Consensus       154 ~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl  230 (231)
T cd04183         154 TAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL  230 (231)
T ss_pred             eEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence            988843  467889999999987 33 33321        12223358899998876 4889998 6899999999986

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.96  E-value=2.7e-28  Score=206.66  Aligned_cols=183  Identities=27%  Similarity=0.457  Sum_probs=151.5

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccC-------cE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLG-------IK   74 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~-------~~   74 (361)
                      |||||||+|+||+|+|...||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++.+. ..++       +.
T Consensus         1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~   79 (200)
T cd02508           1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLF   79 (200)
T ss_pred             CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEE
Confidence            69999999999999999999999999999 999999999999999999999999999999998751 2222       23


Q ss_pred             EEEec----CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEE
Q 018060           75 IICSQ----ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM  150 (361)
Q Consensus        75 i~~~~----~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~  150 (361)
                      +.+..    +..+.|++++++.+.+.+...+.++|++++||++...++.++++.|+++++.+++++.             
T Consensus        80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~-------------  146 (200)
T cd02508          80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK-------------  146 (200)
T ss_pred             EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-------------
Confidence            33321    3457899999999999885333358999999999999999999999888777776643             


Q ss_pred             cCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhc-cC----CCCccccchHHhHHhcCceEEEEecceEEEc
Q 018060          151 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-EL----RPTSIEKEVFPKIALEGKLFAMVLPGFWMDI  220 (361)
Q Consensus       151 ~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l-~~----~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i  220 (361)
                                           .++|+|+|+++++..+ +.    +..++..|+++.++++++++++.++|+|.|+
T Consensus       147 ---------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di  200 (200)
T cd02508         147 ---------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI  200 (200)
T ss_pred             ---------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence                                 4689999999988543 32    2345557999999988999999999999985

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.95  E-value=1.2e-26  Score=198.54  Aligned_cols=180  Identities=28%  Similarity=0.522  Sum_probs=146.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccCh-HHHHHHHHHhh--hccCcEEEE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFE--AKLGIKIIC   77 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~l~~~~--~~~~~~i~~   77 (361)
                      |||||||||+|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++.. +.+++++.++.  ...+..+.+
T Consensus         1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~   80 (214)
T cd04198           1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT   80 (214)
T ss_pred             CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence            899999999999999999999999999999999999999999999999999999744 56777777532  122234455


Q ss_pred             ecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccC-------------CCC
Q 018060           78 SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE-------------PSK  144 (361)
Q Consensus        78 ~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-------------~~~  144 (361)
                      ..+....|++++++.+.+.+  .  ++|++++||.+++.++.++++.|+++++.+++++.+...             ...
T Consensus        81 ~~~~~~~gt~~al~~~~~~i--~--~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~  156 (214)
T cd04198          81 IVLDEDMGTADSLRHIRKKI--K--KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE  156 (214)
T ss_pred             ecCCCCcChHHHHHHHHhhc--C--CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence            55667789999999999887  2  279999999999999999999999988888888776421             124


Q ss_pred             ceeEEEcCCCCeEeeeeec-----------------CC-CCCCCeEEEEEEEeCHhhH
Q 018060          145 YGVVVMEESTGKVEKFVEK-----------------PK-LFVGNKINAGIYLLNPAVL  184 (361)
Q Consensus       145 ~~~v~~~~~~~~v~~~~ek-----------------~~-~~~~~~~~~Giyi~~~~~l  184 (361)
                      +.++.++++++++..+...                 |+ ...+++.++|+|+|+++++
T Consensus       157 ~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         157 RDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             CceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence            6788888887899887542                 11 2357789999999998864

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.94  E-value=2.3e-26  Score=196.92  Aligned_cols=180  Identities=27%  Similarity=0.432  Sum_probs=143.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhh-----hccCcEE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-----AKLGIKI   75 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~-----~~~~~~i   75 (361)
                      |||||||||.|+||.|+|...||+|+|++|+|||+|+++++.++|+++++|+++++.+.+.+++.+..     ...++.+
T Consensus         1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (216)
T cd02507           1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV   80 (216)
T ss_pred             CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence            79999999999999999999999999999999999999999999999999999998888888887521     1123445


Q ss_pred             EEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHH--HHHcCCceEEEEEEc--cC-------CCC
Q 018060           76 ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEF--HKAHGGEASIMVTKV--DE-------PSK  144 (361)
Q Consensus        76 ~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~--~~~~~~~~~i~~~~~--~~-------~~~  144 (361)
                      .+..+....|++++++.+.+.+  .  ++|++++||++++.++.+++++  +...+..+++++...  ..       ...
T Consensus        81 ~~~~~~~~~Gta~~l~~~~~~i--~--~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
T cd02507          81 ITSDLCESAGDALRLRDIRGLI--R--SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE  156 (216)
T ss_pred             EEccCCCCCccHHHHHHHhhcC--C--CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence            5556667889999999999888  2  2799999999999999999965  333444555544433  22       345


Q ss_pred             ceeEEEcCCC--CeEeeeeecCCC------------------CCCCeEEEEEEEeCHhhH
Q 018060          145 YGVVVMEEST--GKVEKFVEKPKL------------------FVGNKINAGIYLLNPAVL  184 (361)
Q Consensus       145 ~~~v~~~~~~--~~v~~~~ek~~~------------------~~~~~~~~Giyi~~~~~l  184 (361)
                      ++++.+|+++  .++.++.|++..                  ..+++.++|+|+|+++++
T Consensus       157 ~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         157 EDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             CcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence            7889999876  566677665442                  346789999999999864

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.94  E-value=1.4e-25  Score=194.48  Aligned_cols=212  Identities=25%  Similarity=0.440  Sum_probs=167.4

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      |||||||.|+||++   ..||+|+|++|+|||+|+++++.++++++++++++++.+.+.+++.++    ++.+  ..+..
T Consensus         1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~----~~~~--~~~~~   71 (229)
T cd02540           1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANP----NVEF--VLQEE   71 (229)
T ss_pred             CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCC----CcEE--EECCC
Confidence            69999999999987   789999999999999999999999999999999998878888777642    3443  34455


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ..|++++++.+...+.. +.++|++++||.  +...++.++++.|.+.++++++...+..++..++.+..+++ ++|..+
T Consensus        72 ~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~  149 (229)
T cd02540          72 QLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRI  149 (229)
T ss_pred             CCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCC-CCEEEE
Confidence            67999999999998843 234899999999  34567899999988777777777777777878888877765 899999


Q ss_pred             eecCCCC----CCCeEEEEEEEeCHhhH-hhccC------CCCccccchHHhHHhcC-ceEEEEecc--eEEEcCCHHH
Q 018060          161 VEKPKLF----VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPG--FWMDIGQPRD  225 (361)
Q Consensus       161 ~ek~~~~----~~~~~~~Giyi~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~--~~~~i~t~~d  225 (361)
                      .|+|...    ...+.++|+|+|+++.+ +.++.      +...+..++++.+++.+ ++.++.++|  .|+.+++|.+
T Consensus       150 ~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  228 (229)
T cd02540         150 VEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ  228 (229)
T ss_pred             EECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence            9986422    13678999999998755 44432      12334468899998875 588998875  5777888876

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.94  E-value=1.2e-25  Score=198.86  Aligned_cols=220  Identities=26%  Similarity=0.347  Sum_probs=158.7

Q ss_pred             CeEEEEecCCCcccCCCCC-CCCCccceeCC-cchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEE
Q 018060            1 MKALILVGGFGTRLRPLTL-SVPKPLVEFAN-KPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKII   76 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~-~~pK~llpl~g-~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~   76 (361)
                      |++||||||.|+||+|+|. ..||+|+|++| +|||+++++++...+ +++++|++++.. +.+++++.+.    ...+.
T Consensus         1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~----~~~~~   76 (274)
T cd02509           1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEG----LPEEN   76 (274)
T ss_pred             CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhc----CCCce
Confidence            8999999999999999996 79999999998 999999999999984 999999999743 4566666541    12334


Q ss_pred             EecCCCCCCCchHHHHHHhhccC-CCCCcEEEEeCCeeec--cCHHHHHHHHHH---cCCceEEEEEEccCCCCceeEEE
Q 018060           77 CSQETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVISE--YPFAEMIEFHKA---HGGEASIMVTKVDEPSKYGVVVM  150 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~~~~~~-~~~~~~lv~~~D~~~~--~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~  150 (361)
                      ++.++...|++.++..+...+.. ..++.++++++|++..  .++.++++.+.+   .+..+++...+......||++..
T Consensus        77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~  156 (274)
T cd02509          77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEA  156 (274)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEe
Confidence            45566678999999999888743 2234799999999765  446666655432   45567777777766688999999


Q ss_pred             cCCC-C---eEeeeeecCCCC-----C---CCeEEEEEEEeCHhhHh-hccC-CC---------------C---ccccch
Q 018060          151 EEST-G---KVEKFVEKPKLF-----V---GNKINAGIYLLNPAVLD-RIEL-RP---------------T---SIEKEV  198 (361)
Q Consensus       151 ~~~~-~---~v~~~~ek~~~~-----~---~~~~~~Giyi~~~~~l~-~l~~-~~---------------~---~~~~d~  198 (361)
                      +++. +   +|.+|.|||...     .   ..++++|+|+|+++.+. .|+. .+               .   .+..+.
T Consensus       157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
T cd02509         157 GEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEA  236 (274)
T ss_pred             CCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence            8642 2   899999999732     1   24789999999977553 2210 00               0   001122


Q ss_pred             HHh----------HHhcCceEEEEecceEEEcCCHH
Q 018060          199 FPK----------IALEGKLFAMVLPGFWMDIGQPR  224 (361)
Q Consensus       199 l~~----------l~~~~~i~~~~~~~~~~~i~t~~  224 (361)
                      ++.          |-+...+.+++.+..|.|++++.
T Consensus       237 ~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~  272 (274)
T cd02509         237 FAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWD  272 (274)
T ss_pred             HhhCCCcccchHhheeCCCcEEEecCCCcCcccCcc
Confidence            222          22345577788888899999865

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.93  E-value=3.7e-24  Score=187.37  Aligned_cols=217  Identities=22%  Similarity=0.268  Sum_probs=156.0

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||+|.++||.      +|+|+|++|+|||+|+++.+.++++++++|+++.  +.+.+++.++    ++++.+..+.
T Consensus         4 ~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~~----~~~v~~~~~~   71 (245)
T PRK05450          4 LIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEAF----GGEVVMTSPD   71 (245)
T ss_pred             EEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHHc----CCEEEECCCc
Confidence            48999999999993      5999999999999999999999999999998864  5566666543    5666665555


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEc------cCCCCceeEEEcCC
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKV------DEPSKYGVVVMEES  153 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~  153 (361)
                      ...|+.. +..+...+...+.+.+++++||+ +. ...++++++.+.+++.+.++++.+.      .++..++++ ++++
T Consensus        72 ~~~gt~~-~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~  149 (245)
T PRK05450         72 HPSGTDR-IAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDAD  149 (245)
T ss_pred             CCCchHH-HHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCC
Confidence            5556554 33344443212234689999999 44 4568999998877666666665554      345556654 7776


Q ss_pred             CCeEeeeeecCCC----------CCCCeEEEEEEEeCHhhHhhccCCCCc-c---cc-chHHhHHhcCceEEEEecc-eE
Q 018060          154 TGKVEKFVEKPKL----------FVGNKINAGIYLLNPAVLDRIELRPTS-I---EK-EVFPKIALEGKLFAMVLPG-FW  217 (361)
Q Consensus       154 ~~~v~~~~ek~~~----------~~~~~~~~Giyi~~~~~l~~l~~~~~~-~---~~-d~l~~l~~~~~i~~~~~~~-~~  217 (361)
                       |+|.+|.|+|..          ..+++.++|+|+|+++.++.+...... +   .. ++++.+....+++++..++ +|
T Consensus       150 -g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w  228 (245)
T PRK05450        150 -GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPS  228 (245)
T ss_pred             -CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCC
Confidence             899999998732          235889999999999999877532211 1   11 1233333344688999986 99


Q ss_pred             EEcCCHHHHHHHHHHH
Q 018060          218 MDIGQPRDYITGLRLY  233 (361)
Q Consensus       218 ~~i~t~~dy~~a~~~~  233 (361)
                      .++++|+||.++++.+
T Consensus       229 ~~i~~~~dl~~a~~~~  244 (245)
T PRK05450        229 IGVDTPEDLERVRALL  244 (245)
T ss_pred             CCcCCHHHHHHHHHHh
Confidence            9999999999998643

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.93  E-value=2.3e-24  Score=177.58  Aligned_cols=222  Identities=26%  Similarity=0.411  Sum_probs=152.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEc-ccChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~-~~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |+|||||||.|+||+|   +.||||+.++|+++|+|++++|.+.|++++++|+ ++..+.++.++.+++.  ..++.+.+
T Consensus         4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~--~~~iv~N~   78 (239)
T COG1213           4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPF--NAKIVINS   78 (239)
T ss_pred             eeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCc--ceEEEeCC
Confidence            7899999999999999   8999999999999999999999999999999999 6677778888876532  45677777


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEE-ccC-CCCceeEEEcCCCCeE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK-VDE-PSKYGVVVMEESTGKV  157 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~-~~~-~~~~~~v~~~~~~~~v  157 (361)
                      .++..+++.+++.+.+.+.  +  .|+++.||++++..   +++...+.++...++... ... ...-..+. .++ |++
T Consensus        79 ~y~ktN~~~Sl~~akd~~~--~--~fii~~sD~vye~~---~~e~l~~a~~~~li~d~~~~~~~~~ea~kv~-~e~-G~i  149 (239)
T COG1213          79 DYEKTNTGYSLLLAKDYMD--G--RFILVMSDHVYEPS---ILERLLEAPGEGLIVDRRPRYVGVEEATKVK-DEG-GRI  149 (239)
T ss_pred             CcccCCceeEEeeehhhhc--C--cEEEEeCCEeecHH---HHHHHHhCcCCcEEEeccccccccCceeEEE-ecC-CEE
Confidence            7777778999999999994  3  69999999999855   333333333333443322 111 11222333 343 888


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEe-----cceEEEcCCHHHHHHHHHH
Q 018060          158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVL-----PGFWMDIGQPRDYITGLRL  232 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~-----~~~~~~i~t~~dy~~a~~~  232 (361)
                      .++..+-+  .-+..++|++.|+..++..+.+....-..-.+..+...-.+.....     ..+|.++|+|||+.++.+.
T Consensus       150 ~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~  227 (239)
T COG1213         150 VEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKY  227 (239)
T ss_pred             ehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHH
Confidence            88865433  3456799999999998865531110000001122222212222222     3589999999999999887


Q ss_pred             HHHhhh
Q 018060          233 YLDSLR  238 (361)
Q Consensus       233 ~l~~~~  238 (361)
                      ......
T Consensus       228 ~~~~~~  233 (239)
T COG1213         228 LVPNIK  233 (239)
T ss_pred             HHHHHH
Confidence            765443

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.93  E-value=5.1e-24  Score=185.78  Aligned_cols=216  Identities=24%  Similarity=0.303  Sum_probs=157.0

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |.+||||+|.++||+      ||+|+|++|+|||+|+++.+.++ ++++|+|+++.  +.+.+++.++    ++++.+..
T Consensus         2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~~----~~~~~~~~   69 (239)
T cd02517           2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVESF----GGKVVMTS   69 (239)
T ss_pred             EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHHc----CCEEEEcC
Confidence            468999999999995      59999999999999999999998 89999998864  5667776543    56666555


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHc-CCceEEEEEEccCCC---Ccee--EEEc
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAH-GGEASIMVTKVDEPS---KYGV--VVME  151 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~-~~~~~i~~~~~~~~~---~~~~--v~~~  151 (361)
                      +....|+++ +..+...+.. ..+.++++.||+  +...+++.+++.|.+. +.++++++.+..++.   .++.  +..+
T Consensus        70 ~~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  147 (239)
T cd02517          70 PDHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD  147 (239)
T ss_pred             cccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence            555557764 5566655632 134799999998  4455689999988766 566777777765444   3333  5566


Q ss_pred             CCCCeEeeeeecCC-------CCCCCeEEEEEEEeCHhhHhhccCCC-Cccc-cchHH--hHHhcCc-eEEEEecceEEE
Q 018060          152 ESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIELRP-TSIE-KEVFP--KIALEGK-LFAMVLPGFWMD  219 (361)
Q Consensus       152 ~~~~~v~~~~ek~~-------~~~~~~~~~Giyi~~~~~l~~l~~~~-~~~~-~d~l~--~l~~~~~-i~~~~~~~~~~~  219 (361)
                      ++ ++|..+.++|.       ...+++.++|+|+|++++++.+.... ..+. .+.+.  .++.++. +.++..++.|.+
T Consensus       148 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~  226 (239)
T cd02517         148 KD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIG  226 (239)
T ss_pred             CC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCC
Confidence            65 88988876542       12367899999999999998775421 1111 12222  3455554 888888889999


Q ss_pred             cCCHHHHHHHHH
Q 018060          220 IGQPRDYITGLR  231 (361)
Q Consensus       220 i~t~~dy~~a~~  231 (361)
                      +++|+||.++++
T Consensus       227 i~t~~dl~~a~~  238 (239)
T cd02517         227 VDTPEDLERVEA  238 (239)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999874

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.92  E-value=4.8e-24  Score=201.51  Aligned_cols=226  Identities=23%  Similarity=0.330  Sum_probs=160.0

Q ss_pred             CeEEEEecCCCcccCCCCCC-CCCccceeCC-cchHHHHHHHHHHcCCCEEEEEcccCh-HHHHHHHHHhhhccCcE-EE
Q 018060            1 MKALILVGGFGTRLRPLTLS-VPKPLVEFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIK-II   76 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~-~pK~llpl~g-~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~-i~   76 (361)
                      |++||||||.|+||+|+|.. .||+|+|+.| +|||+++++++.+.++++++|+++... ..+++.+.++    +.+ ..
T Consensus         1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~~~   76 (468)
T TIGR01479         1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLASN   76 (468)
T ss_pred             CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCcce
Confidence            78999999999999999986 8999999976 899999999999989999999998743 3445555543    322 23


Q ss_pred             EecCCCCCCCchHHHHHHhhccC--CCCCcEEEEeCCeeecc--CHHHHHHHH---HHcCCceEEEEEEccCCCCceeEE
Q 018060           77 CSQETEPLGTAGPLALARDKLID--DTGEPFFVLNSDVISEY--PFAEMIEFH---KAHGGEASIMVTKVDEPSKYGVVV  149 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~~~~~~--~~~~~~lv~~~D~~~~~--~l~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~  149 (361)
                      +..++...|++.++..+...+..  ..++.+++++||++...  +|.++++.+   .+.+..+++...+......||++.
T Consensus        77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~  156 (468)
T TIGR01479        77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIR  156 (468)
T ss_pred             EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEE
Confidence            55667778999998887766532  22335899999986543  478887764   333444555555555667899999


Q ss_pred             EcC-----CCCeEeeeeecCCCCC--------CCeEEEEEEEeCHhhH------------hhccCC-----C----Cccc
Q 018060          150 MEE-----STGKVEKFVEKPKLFV--------GNKINAGIYLLNPAVL------------DRIELR-----P----TSIE  195 (361)
Q Consensus       150 ~~~-----~~~~v~~~~ek~~~~~--------~~~~~~Giyi~~~~~l------------~~l~~~-----~----~~~~  195 (361)
                      .++     +.++|.+|.|||....        ..++++|+|+|+++.+            +.+...     .    ..+.
T Consensus       157 ~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  236 (468)
T TIGR01479       157 RGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLD  236 (468)
T ss_pred             eCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeC
Confidence            873     2268999999997311        3579999999995533            222210     0    0111


Q ss_pred             cchHH---------hHH-hcCceEEEEecceEEEcCCHHHHHHHH
Q 018060          196 KEVFP---------KIA-LEGKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       196 ~d~l~---------~l~-~~~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                      .+.++         .++ +...+.+.+.+..|.|+++++++.+..
T Consensus       237 ~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~  281 (468)
T TIGR01479       237 KEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS  281 (468)
T ss_pred             HHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence            23344         222 334577888888999999999988874

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.90  E-value=4.3e-22  Score=173.52  Aligned_cols=211  Identities=22%  Similarity=0.303  Sum_probs=151.4

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .|||||+|.++||+      +|+|+|++|+|||+|+++.+.++ ++++++|+++.  +.+.+++.++    ++++.+..+
T Consensus         4 ~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~~----~~~v~~~~~   71 (238)
T PRK13368          4 VVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEAF----GGKVVMTSD   71 (238)
T ss_pred             EEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHHc----CCeEEecCc
Confidence            48999999999994      49999999999999999999998 79999998864  5677777653    566655555


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCC-ceEEEEEEcc------CCCCceeEEEc
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGG-EASIMVTKVD------EPSKYGVVVME  151 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~-~~~i~~~~~~------~~~~~~~v~~~  151 (361)
                      ....|+. .+..+...+  . .|.+++++||+  +...++.++++.+.+.+. .+++++.+.+      ++..++. ..+
T Consensus        72 ~~~~g~~-~~~~a~~~~--~-~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~  146 (238)
T PRK13368         72 DHLSGTD-RLAEVMLKI--E-ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVD  146 (238)
T ss_pred             cCCCccH-HHHHHHHhC--C-CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EEC
Confidence            5445555 466666555  2 34899999997  556679999998876544 3444444432      2444443 445


Q ss_pred             CCCCeEeeeeecCCC------CCCCeEEEEEEEeCHhhHhhccCCC-Cc---ccc-chHHhHHhc-CceEEEEecceEEE
Q 018060          152 ESTGKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRIELRP-TS---IEK-EVFPKIALE-GKLFAMVLPGFWMD  219 (361)
Q Consensus       152 ~~~~~v~~~~ek~~~------~~~~~~~~Giyi~~~~~l~~l~~~~-~~---~~~-d~l~~l~~~-~~i~~~~~~~~~~~  219 (361)
                      ++ |++..+.|+|..      ....+.++|+|+|+++++..+.... ..   +.. +++ .++.. .++.++..+++|.|
T Consensus       147 ~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~D  224 (238)
T PRK13368        147 KN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIG  224 (238)
T ss_pred             CC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCC
Confidence            54 899999875421      1144789999999999998874321 11   222 555 45444 45889988899999


Q ss_pred             cCCHHHHHHHHH
Q 018060          220 IGQPRDYITGLR  231 (361)
Q Consensus       220 i~t~~dy~~a~~  231 (361)
                      +++|+||.+++.
T Consensus       225 I~t~~Dl~~a~~  236 (238)
T PRK13368        225 VDTPEDLERVRA  236 (238)
T ss_pred             CCCHHHHHHHHH
Confidence            999999999865

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=2.9e-19  Score=153.72  Aligned_cols=228  Identities=25%  Similarity=0.366  Sum_probs=153.7

Q ss_pred             CeEEEEecCCCcccCCCC-CCCCCcccee-CCcchHHHHHHHHHH-cCCCEEEEEcccCh-HHHHHHHHHhhhccCcEEE
Q 018060            1 MKALILVGGFGTRLRPLT-LSVPKPLVEF-ANKPMILHQIEALKA-VGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKII   76 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt-~~~pK~llpl-~g~pli~~~l~~l~~-~gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~   76 (361)
                      |.+||||+|.|+|||||+ +..||+++++ ++++|++.+++++.. .+.++++|++++++ ..+++.+.+.....-..  
T Consensus         2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~--   79 (333)
T COG0836           2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG--   79 (333)
T ss_pred             ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc--
Confidence            679999999999999995 6899999999 569999999999988 46899999999854 44566665532211112  


Q ss_pred             EecCCCCCCCchHHHHHHhhccCCCCC-cEEEEeCCeeeccC--HHHHHHHHH---HcCCceEEEEEEccCCCCceeEEE
Q 018060           77 CSQETEPLGTAGPLALARDKLIDDTGE-PFFVLNSDVISEYP--FAEMIEFHK---AHGGEASIMVTKVDEPSKYGVVVM  150 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~~~~~~~~~~-~~lv~~~D~~~~~~--l~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~~  150 (361)
                      ++-++....|+-++..+.-.+.+...| -++++++|++....  +.+.++...   +.+.-.|.-..+....++|||+..
T Consensus        80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~  159 (333)
T COG0836          80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET  159 (333)
T ss_pred             eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence            344556678888888887665433322 58999999966543  666665432   223333333344455568999998


Q ss_pred             cCC-----CCeEeeeeecCCC-------CCC-CeEEEEEEEeCHhhH-hhccC-CCC----------cc---c-----cc
Q 018060          151 EES-----TGKVEKFVEKPKL-------FVG-NKINAGIYLLNPAVL-DRIEL-RPT----------SI---E-----KE  197 (361)
Q Consensus       151 ~~~-----~~~v~~~~ek~~~-------~~~-~~~~~Giyi~~~~~l-~~l~~-~~~----------~~---~-----~d  197 (361)
                      .+.     .-+|.+|.|||..       ..+ .++|+|+|+|+...+ +.+.. .+.          ..   .     .+
T Consensus       160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e  239 (333)
T COG0836         160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE  239 (333)
T ss_pred             CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence            652     2479999999982       123 579999999998844 44421 110          00   0     01


Q ss_pred             h----------HHhHHhcCceEEEEecceEEEcCCHHHHHHHH
Q 018060          198 V----------FPKIALEGKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       198 ~----------l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                      .          +.-|-+...+.+.+.+-.|-|++++....+..
T Consensus       240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~  282 (333)
T COG0836         240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL  282 (333)
T ss_pred             HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence            1          11133455677788888899999987666654

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=99.82  E-value=4.3e-19  Score=140.25  Aligned_cols=213  Identities=21%  Similarity=0.310  Sum_probs=146.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.|||||||.|+||.|+|.+.||+|+.+.|+|||+++++.|.++|+++|++|+++-.+++. ||.+   +.++.+++.+.
T Consensus         1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkd---Ky~vtLvyN~k   76 (231)
T COG4750           1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKD---KYDVTLVYNPK   76 (231)
T ss_pred             CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHH---hcCeEEEeCch
Confidence            8999999999999999999999999999999999999999999999999999999765444 5543   33788999988


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ........+++.+++.+.     +.-++.+|......   +...+..  .+-...+.+......|..+ .+.+ ++|+++
T Consensus        77 Y~~yNn~ySlyla~d~l~-----ntYiidsDnyl~kN---if~~~~~--~S~Yfav~~~~~tnEw~l~-~~~~-~ki~~v  144 (231)
T COG4750          77 YREYNNIYSLYLARDFLN-----NTYIIDSDNYLTKN---IFLTKES--HSKYFAVYRSGKTNEWLLI-YNSD-GKITRV  144 (231)
T ss_pred             HHhhhhHHHHHHHHHHhc-----ccEEeccchHhhhh---hhhcCcc--cceEEEEEecCCCceeEEE-EcCC-CcEEEE
Confidence            888889999999999994     35688889855422   2222111  1123333333344455443 3554 888887


Q ss_pred             eecCCCCCCCeEEEEEEEeCHhhHhhcc----------CCCCccccchHHhHHhcCceEEEEe-cceEEEcCCHHHHHHH
Q 018060          161 VEKPKLFVGNKINAGIYLLNPAVLDRIE----------LRPTSIEKEVFPKIALEGKLFAMVL-PGFWMDIGQPRDYITG  229 (361)
Q Consensus       161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~----------~~~~~~~~d~l~~l~~~~~i~~~~~-~~~~~~i~t~~dy~~a  229 (361)
                      .-.   ....+..+|+-.|+...-+.+.          ++...+..++.-.-+++-.++.-.. ++..+.+++.++|.+.
T Consensus       145 ~Ig---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~  221 (231)
T COG4750         145 DIG---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKF  221 (231)
T ss_pred             Eec---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhh
Confidence            532   2445678899999987655431          1122233333333333322322222 3467788999988877


Q ss_pred             HHH
Q 018060          230 LRL  232 (361)
Q Consensus       230 ~~~  232 (361)
                      ...
T Consensus       222 ~~~  224 (231)
T COG4750         222 EQK  224 (231)
T ss_pred             hhh
Confidence            654

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.82  E-value=4.8e-19  Score=165.90  Aligned_cols=227  Identities=22%  Similarity=0.306  Sum_probs=151.3

Q ss_pred             CeEEEEecCCCcccCCCCCC-CCCccceeC-CcchHHHHHHHHHHcCCCEEEEEcccC-hHHHHHHHHHhhhccCcEEEE
Q 018060            1 MKALILVGGFGTRLRPLTLS-VPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIIC   77 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~-~pK~llpl~-g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~   77 (361)
                      |.+||||||.|+||+|++.. .||+|+|+. ++|||+++++++.+.++.+.+++++.. ...+++.+.++..   ..-.+
T Consensus         6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~i   82 (478)
T PRK15460          6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENI   82 (478)
T ss_pred             eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccE
Confidence            67999999999999999987 799999995 579999999999988877777888874 3455666654321   01133


Q ss_pred             ecCCCCCCCchHHHHHHhhccCCC---CCcEEEEeCCeeeccC--HHHHHHHHH---HcCCceEEEEEEccCCCCceeEE
Q 018060           78 SQETEPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYP--FAEMIEFHK---AHGGEASIMVTKVDEPSKYGVVV  149 (361)
Q Consensus        78 ~~~~~~~g~~~al~~~~~~~~~~~---~~~~lv~~~D~~~~~~--l~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~  149 (361)
                      +.++...+|+.++..+...+....   ++-++++++|++....  |.+.++...   +.+.-+|+-..+....+.|||+.
T Consensus        83 i~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~  162 (478)
T PRK15460         83 ILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIR  162 (478)
T ss_pred             EecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEE
Confidence            455666788888777766554321   2368899999965543  555554432   22333444444555667899999


Q ss_pred             EcCCC--------CeEeeeeecCCC-------CCC-CeEEEEEEEeCHhhH-hhccC-CC---------------C-c--
Q 018060          150 MEEST--------GKVEKFVEKPKL-------FVG-NKINAGIYLLNPAVL-DRIEL-RP---------------T-S--  193 (361)
Q Consensus       150 ~~~~~--------~~v~~~~ek~~~-------~~~-~~~~~Giyi~~~~~l-~~l~~-~~---------------~-~--  193 (361)
                      .++..        .+|.+|.|||..       ..+ .++|+|+|+|+.+.+ +.|+. .+               . .  
T Consensus       163 ~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~  242 (478)
T PRK15460        163 RGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFI  242 (478)
T ss_pred             eCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccce
Confidence            77431        379999999983       123 478999999998844 33321 11               0 0  


Q ss_pred             -cccchHHh----------HHhcCceEEEEecceEEEcCCHHHHHHHH
Q 018060          194 -IEKEVFPK----------IALEGKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       194 -~~~d~l~~----------l~~~~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                       +..+.++.          |-+..++.+.+.+..|.|+++..++.+..
T Consensus       243 ~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~  290 (478)
T PRK15460        243 RVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS  290 (478)
T ss_pred             eeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence             00111221          22344577777788899999988766653

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.82  E-value=8.6e-20  Score=156.05  Aligned_cols=140  Identities=23%  Similarity=0.304  Sum_probs=120.0

Q ss_pred             cchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHHHhhhh---------------cccccccCCcEEecceEEcCC
Q 018060          196 KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK---------------KSSLKLATGANIVGNVLVHES  260 (361)
Q Consensus       196 ~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~---------------~~~~~~~~~~~i~~~~~i~~~  260 (361)
                      .|.++.|++.+   ++.++|+|.|+   ++|+++++..+.....               .....+++++.+.++++|+++
T Consensus        31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~  104 (231)
T TIGR03532        31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN  104 (231)
T ss_pred             chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence            35677776665   78889999999   9999999999976431               123457788888889999999


Q ss_pred             CEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcCCCEECCCcEEcCceEECCC
Q 018060          261 AQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTVGQWARVENMTILGED  330 (361)
Q Consensus       261 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~ig~~~~i~~~~~ig~~  330 (361)
                      +.|++++.|+++++||++|.|+.++.|. +++|+++|.|+.+++|.+         ++|++++.||.++.|.+++.||++
T Consensus       105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~  184 (231)
T TIGR03532       105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKG  184 (231)
T ss_pred             CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCC
Confidence            9999999998999999999999999996 899999999999999974         789999999999999888999999


Q ss_pred             eEECCceEEcC
Q 018060          331 VHVCDEIYSNG  341 (361)
Q Consensus       331 ~~v~~~~~i~~  341 (361)
                      ++|++++++.+
T Consensus       185 ~~IgagsvV~~  195 (231)
T TIGR03532       185 AVVAAGAIVTE  195 (231)
T ss_pred             CEECCCCEEcc
Confidence            99999998854

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PLN02917 CMP-KDO synthetase

Probab=99.80  E-value=1.1e-17  Score=148.66  Aligned_cols=216  Identities=19%  Similarity=0.186  Sum_probs=145.1

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||+|.++||.      +|+|+|++|+|||+|+++.+.+++..+.+++ ..+.+++.+++.++    ++++....+.
T Consensus        49 ~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~----~v~vi~~~~~  117 (293)
T PLN02917         49 VGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF----GADVIMTSES  117 (293)
T ss_pred             EEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc----CCEEEeCCcc
Confidence            48999999999994      4999999999999999999998764333333 34456777777543    4555554445


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEE----EccCCCCceeEE--EcCC
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVT----KVDEPSKYGVVV--MEES  153 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~--~~~~  153 (361)
                      ...|+... ..+.+.+.. +.|.+++++||+  +....++.+++.+.+. .+.+++..    ..+++..||.+.  .+++
T Consensus       118 ~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~  194 (293)
T PLN02917        118 CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDNQ  194 (293)
T ss_pred             cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECCC
Confidence            55566555 567777742 234899999999  4445689999987654 33333332    346778899875  5665


Q ss_pred             CCeEeeeeec--CC-------CCCCCeEEEEEEEeCHhhHhhccCC-CCccc-----cchHHhHHhcC-ceEEEEecceE
Q 018060          154 TGKVEKFVEK--PK-------LFVGNKINAGIYLLNPAVLDRIELR-PTSIE-----KEVFPKIALEG-KLFAMVLPGFW  217 (361)
Q Consensus       154 ~~~v~~~~ek--~~-------~~~~~~~~~Giyi~~~~~l~~l~~~-~~~~~-----~d~l~~l~~~~-~i~~~~~~~~~  217 (361)
                       |++..|..+  |.       .....+.++|+|+|+.+.|..|..- ....+     .|+. . +.++ ++..+..+...
T Consensus       195 -g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~-~-le~G~~i~~~~~~~~~  271 (293)
T PLN02917        195 -GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLK-V-LENGYKMKVIKVDHEA  271 (293)
T ss_pred             -CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHH-H-HhCCCceEEEEeCCCC
Confidence             776655432  11       1223478999999999988866421 11122     2332 3 3444 57777666566


Q ss_pred             EEcCCHHHHHHHHHHHH
Q 018060          218 MDIGQPRDYITGLRLYL  234 (361)
Q Consensus       218 ~~i~t~~dy~~a~~~~l  234 (361)
                      ..++|++|+.++.+.+.
T Consensus       272 ~GVnt~~dL~~ae~~~~  288 (293)
T PLN02917        272 HGVDTPEDVEKIEALMR  288 (293)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            68999999999988653

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.77  E-value=2.5e-17  Score=136.40  Aligned_cols=179  Identities=21%  Similarity=0.308  Sum_probs=125.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.|||||||+|+||++    .||+|+|++|+|||+|+++.+.++++++++++++++.+.++.++.+.    ...+  . .
T Consensus         1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~~--~-~   69 (183)
T TIGR00454         1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKDY--K-N   69 (183)
T ss_pred             CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcEE--E-e
Confidence            8999999999999976    79999999999999999999999899999999998888888888652    1122  1 2


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ....|...++..+.+.+.  ..+++++++||+  +....++.+++.+...+..+..++.+.+.....+.   +.      
T Consensus        70 ~~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~------  138 (183)
T TIGR00454        70 ASGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIPKEKYPNPSI---DF------  138 (183)
T ss_pred             cCCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEecccccCCCcc---cc------
Confidence            445577788888877652  234899999999  44566899999887766555554444322211111   11      


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                                ..++.+|+-++.+..-.+                  .++.. +..+.-.+.++|++|+..+.
T Consensus       139 ----------~~~~p~g~n~~~~~~~~~------------------~~~~~-~~~~~~~~nvnt~~d~~~~~  181 (183)
T TIGR00454       139 ----------NGLVPAGVNIVSSKNGYQ------------------EEEII-MVIDELIVNINTKDDLKLAE  181 (183)
T ss_pred             ----------ccEeeeEEEEecCCCccc------------------ceeee-eccccceEecCCHHHHHHhh
Confidence                      115789999988752211                  01110 12233577889999986653

At this time this gene appears to be present only in Archea

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.75  E-value=1.9e-16  Score=137.22  Aligned_cols=210  Identities=20%  Similarity=0.241  Sum_probs=140.2

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      +||+|+|.|+||.      +|+|++++|+|||+|+++.+.++++++|+|+++.  +.+.+.++++    ++++.......
T Consensus         2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~~----g~~~v~~~~~~   69 (238)
T TIGR00466         2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQKF----GIEVCMTSKHH   69 (238)
T ss_pred             EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHHc----CCEEEEeCCCC
Confidence            7999999999993      6999999999999999999998889999998864  4466666543    55554333333


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCC-----CceeEEEcCCCC
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPS-----KYGVVVMEESTG  155 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~v~~~~~~~  155 (361)
                      ..| .+.+..+...+...+.+.++++.||.  +....++++++.+.+....++.++.+..++.     ....+..+.+ |
T Consensus        70 ~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~-g  147 (238)
T TIGR00466        70 NSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQ-G  147 (238)
T ss_pred             CCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCC-C
Confidence            333 34444454444212334789999999  3344589999987655556677777764422     1233444554 7


Q ss_pred             eEeeeeecCC----C-------CC--CCeEEEEEEEeCHhhHhhccCC-CCccc----cchHHhHHhcCceEEEEecce-
Q 018060          156 KVEKFVEKPK----L-------FV--GNKINAGIYLLNPAVLDRIELR-PTSIE----KEVFPKIALEGKLFAMVLPGF-  216 (361)
Q Consensus       156 ~v~~~~ek~~----~-------~~--~~~~~~Giyi~~~~~l~~l~~~-~~~~~----~d~l~~l~~~~~i~~~~~~~~-  216 (361)
                      ....|...+-    .       +.  ..+...|+|.|++++|+.+..- +..++    .|.++.|-...++.+...+.. 
T Consensus       148 ~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~  227 (238)
T TIGR00466       148 YALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVP  227 (238)
T ss_pred             eEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCC
Confidence            7766655421    1       11  1356899999999999887532 22222    255677766667888777655 


Q ss_pred             EEEcCCHHHH
Q 018060          217 WMDIGQPRDY  226 (361)
Q Consensus       217 ~~~i~t~~dy  226 (361)
                      -..+|||+|+
T Consensus       228 ~~~vdt~~d~  237 (238)
T TIGR00466       228 SVGVDTQEDL  237 (238)
T ss_pred             CCCCCChHHc
Confidence            4589999986

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.73  E-value=3.3e-16  Score=123.38  Aligned_cols=166  Identities=27%  Similarity=0.437  Sum_probs=121.5

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||+|+|+||+-    .-|||++++|||||.|+++.+.+ .+++++++++++...++.|+.++    ++++.  . 
T Consensus         1 m~~iiMAGGrGtRmg~----~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----gv~vi--~-   68 (177)
T COG2266           1 MMAIIMAGGRGTRMGR----PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----GVKVI--E-   68 (177)
T ss_pred             CceEEecCCcccccCC----CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----CceEE--E-
Confidence            7899999999999983    38999999999999999999998 68999999999999999999875    45553  2 


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ....|....+..+.+.+  ..  ++|++++|+ +.+. .++.+++.+..-..+...+               ... |+  
T Consensus        69 tpG~GYv~Dl~~al~~l--~~--P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~~~---------------~~~-G~--  126 (177)
T COG2266          69 TPGEGYVEDLRFALESL--GT--PILVVSADLPFLNPSIIDSVIDAAASVEVPIVTV---------------VKA-GR--  126 (177)
T ss_pred             cCCCChHHHHHHHHHhc--CC--ceEEEecccccCCHHHHHHHHHHHhhccCceeEe---------------ecc-Cc--
Confidence            23347889999999998  33  899999999 3333 4788887765111111111               111 11  


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  234 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l  234 (361)
                                   +.+|+-++..     .                +.++.+....++-.++++|++||.++++...
T Consensus       127 -------------v~~Glni~~~-----~----------------~~~~~~~i~~~~la~NVNT~eDl~~a~~ll~  168 (177)
T COG2266         127 -------------VPVGLNIVGG-----K----------------QEEEILEIDNPELAVNVNTPEDLKKAERLLR  168 (177)
T ss_pred             -------------cceeeEeecC-----C----------------CcceeEEeeccceeEecCCHHHHHHHHHHHh
Confidence                         3567777765     1                0233444445567889999999999987653

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.69  E-value=4.4e-16  Score=127.09  Aligned_cols=119  Identities=29%  Similarity=0.485  Sum_probs=94.8

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      |||||||+|+||+.     ||+|+|++|+|||+|+++.+.+.++++|+|++++  +++..++..+    +++++..... 
T Consensus         1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~----~~~~v~~~~~-   68 (160)
T PF12804_consen    1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY----GIKVVVDPEP-   68 (160)
T ss_dssp             EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT----TSEEEE-STS-
T ss_pred             CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc----CceEEEeccc-
Confidence            79999999999965     9999999999999999999999999999999998  4455555432    5666555433 


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEE
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIM  135 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~  135 (361)
                      ..|++.+++.+...+.  ..++|++++||+ + ....++++++.+.+++.++++.
T Consensus        69 ~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~  121 (160)
T PF12804_consen   69 GQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP  121 (160)
T ss_dssp             SCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred             cCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence            4799999999999874  334999999999 3 3445899999988776655544

...

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.67  E-value=1.5e-15  Score=122.91  Aligned_cols=109  Identities=20%  Similarity=0.306  Sum_probs=96.0

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEE-----eceEEccCcEECCCCEEeccEEcCCC
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHS  313 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~  313 (361)
                      ...+++++.+.+++.|++++.|+++|+|.+   ++.||++|.|+++|.|     .+++|++++.|++++++.+++||+++
T Consensus         6 ~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~   85 (155)
T cd04745           6 SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA   85 (155)
T ss_pred             CeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence            445678888889999999999999999875   4899999999999999     57999999999999999999999999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcCcE-EccCcee
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEI  350 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~-i~~~~~v  350 (361)
                      .||.++.|.++++||+++.|++++.+.... +.+++.+
T Consensus        86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v  123 (155)
T cd04745          86 LVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLI  123 (155)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEE
Confidence            999999999999999999999999987544 4444444

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.67  E-value=6.2e-15  Score=127.13  Aligned_cols=204  Identities=19%  Similarity=0.211  Sum_probs=134.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEec-
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ-   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~-   79 (361)
                      .+||||+|.|+||.      +|+|++++|+|||+|+++.+.+++ +++|+|++.  .+.+.+++.++    +..+.+.. 
T Consensus         3 ~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~----~~~~~~~~~   70 (223)
T cd02513           3 LAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY----GAEVPFLRP   70 (223)
T ss_pred             EEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh----CCCceeeCC
Confidence            58999999999994      499999999999999999999987 788887664  34555555443    33222221 


Q ss_pred             ---CCCCCCCchHHHHHHhhccCC--CCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcC
Q 018060           80 ---ETEPLGTAGPLALARDKLIDD--TGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEE  152 (361)
Q Consensus        80 ---~~~~~g~~~al~~~~~~~~~~--~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~  152 (361)
                         .....|+.+++..+.+.+...  ..+.++++.||+  +...+++++++.+.+.+.++++.+.+..+...++... ++
T Consensus        71 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  149 (223)
T cd02513          71 AELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGL-DD  149 (223)
T ss_pred             hHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheee-cc
Confidence               123347788888888776421  124899999999  4455699999998877667776666654443333332 22


Q ss_pred             CCCeEeeeeecC--C---CCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecc-eEEEcCCHHHH
Q 018060          153 STGKVEKFVEKP--K---LFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDY  226 (361)
Q Consensus       153 ~~~~v~~~~ek~--~---~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~-~~~~i~t~~dy  226 (361)
                      +...+..+.+..  .   .+.....++|+|+++++.+......        +     .+++..+.++. ...+|++++||
T Consensus       150 ~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~--------~-----g~~~~~~~~~~~~~~dI~~~~D~  216 (223)
T cd02513         150 NGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNSF--------F-----GGKTGPYEMPRERSIDIDTEEDF  216 (223)
T ss_pred             CCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCCc--------c-----CCCeEEEEeCccceeCCCCHHHH
Confidence            101222221211  1   1223356889999999977552111        1     45666666655 57899999999


Q ss_pred             HHHHH
Q 018060          227 ITGLR  231 (361)
Q Consensus       227 ~~a~~  231 (361)
                      ..+..
T Consensus       217 ~~ae~  221 (223)
T cd02513         217 ELAEA  221 (223)
T ss_pred             HHHHH
Confidence            87754

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.67  E-value=1.9e-15  Score=123.43  Aligned_cols=111  Identities=23%  Similarity=0.399  Sum_probs=92.6

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEE
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  321 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i  321 (361)
                      ...+.+++.+.++++|+++++|++++.|+++++||++|.|+++++|.+++|++++.|++++++.+++|++++.|++++.+
T Consensus        23 ~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i  102 (163)
T cd05636          23 GAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTIT  102 (163)
T ss_pred             CCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEE
Confidence            34456777777888888888888888888889999999999999999999999999999999999999999999999988


Q ss_pred             cC------------------------ceEECCCeEECCceEEc-CcEEccCceeec
Q 018060          322 EN------------------------MTILGEDVHVCDEIYSN-GGVVLPHKEIKS  352 (361)
Q Consensus       322 ~~------------------------~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~  352 (361)
                      .+                        +++||+++.+|.++.+. +..+++++.+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~a  158 (163)
T cd05636         103 ANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYP  158 (163)
T ss_pred             cccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECC
Confidence            43                        58888888888888875 666677766644

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.67  E-value=1e-15  Score=121.63  Aligned_cols=116  Identities=19%  Similarity=0.276  Sum_probs=104.4

Q ss_pred             ccccccCCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEeccEEcCC
Q 018060          241 SSLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWH  312 (361)
Q Consensus       241 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~  312 (361)
                      ...++++++.+-+++.|++++.|.++++|++   ...||+++-|.++|.|.     .+.||++|+||+++.|++|+|+++
T Consensus        16 ~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~   95 (176)
T COG0663          16 PTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN   95 (176)
T ss_pred             CceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC
Confidence            3467889999999999999999999999984   46899999999999996     479999999999999999999999


Q ss_pred             CEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeecccCC
Q 018060          313 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK  356 (361)
Q Consensus       313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~  356 (361)
                      |.||-+++|.+|+.||++|.||+|+.+.++...|...+.-..|.
T Consensus        96 ~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pa  139 (176)
T COG0663          96 VLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPA  139 (176)
T ss_pred             cEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcc
Confidence            99999999999999999999999999998888888777654443

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.67  E-value=1.3e-15  Score=126.53  Aligned_cols=109  Identities=17%  Similarity=0.299  Sum_probs=95.0

Q ss_pred             ccccccCCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEE-----eceEEccCcEECCCCEEeccEEcCC
Q 018060          241 SSLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWH  312 (361)
Q Consensus       241 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~  312 (361)
                      ....+++++.+.++++|++++.|+++|+|.+   .++||++|.|+++|.|     .+++|++++.|+++++|++|+|+++
T Consensus        13 ~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~   92 (192)
T TIGR02287        13 PEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN   92 (192)
T ss_pred             CCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC
Confidence            3456778888888999999999999999864   5789999999999999     4799999999999999999999999


Q ss_pred             CEECCCcEEcCceEECCCeEECCceEEcCcEEccCce
Q 018060          313 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  349 (361)
Q Consensus       313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~  349 (361)
                      +.||.++.+.++++||+++.|++++.+......|...
T Consensus        93 ~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~  129 (192)
T TIGR02287        93 ALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQY  129 (192)
T ss_pred             CEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCe
Confidence            9999999999999999999999999987655444333

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=99.66  E-value=2e-15  Score=129.69  Aligned_cols=208  Identities=17%  Similarity=0.203  Sum_probs=133.7

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .+||||||.|+||++   ..||+|+|++|+|||+|+++.+.+++ +++++|+++++.......+..+..  ...+.+...
T Consensus         2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~--~~~~~~~~~   76 (218)
T cd02516           2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL--SKVVKIVEG   76 (218)
T ss_pred             EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc--CCCeEEECC
Confidence            589999999999976   47999999999999999999999876 899999998865444433322111  112222222


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                        +.+...+++.+.+.+...+.+.++++.||+  +....++++++.+.+.+  ..+...+..+    +....+++ |.+.
T Consensus        77 --~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~----~~~~~~~~-g~~~  147 (218)
T cd02516          77 --GATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVTD----TIKRVDDD-GVVV  147 (218)
T ss_pred             --chHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEeccc----cEEEecCC-Ccee
Confidence              224578899998887312344899999999  33445899999886543  2233333322    23334554 7888


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCC---CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYI  227 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~---~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~  227 (361)
                      ++.+.   ..-....++ ++|+.+.+..+...   ...+..|....+.+.+ ++.....+...++++||+||.
T Consensus       148 ~~~~r---~~~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~  216 (218)
T cd02516         148 ETLDR---EKLWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLA  216 (218)
T ss_pred             ecCCh---HHhhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHh
Confidence            87763   222334556 89999888765311   1112233333343333 465655555667999999984

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.66  E-value=2.5e-15  Score=125.75  Aligned_cols=119  Identities=20%  Similarity=0.382  Sum_probs=90.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||.|+||++     ||+|+|++|+|||+|+++.+.+.++++++|+++.......+++..    .++.+... .
T Consensus         1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~   70 (186)
T cd04182           1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVVVIN-P   70 (186)
T ss_pred             CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEEEeC-C
Confidence            5689999999999987     999999999999999999999988999999998865555544433    23433222 2


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCC
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGG  130 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~  130 (361)
                      ....|+..+++.+.+.+.. ..+.+++++||+  +....++.+++.+...+.
T Consensus        71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~  121 (186)
T cd04182          71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA  121 (186)
T ss_pred             ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence            3345889999999988742 334899999999  334458888887765443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.66  E-value=3.9e-15  Score=127.79  Aligned_cols=207  Identities=17%  Similarity=0.196  Sum_probs=134.4

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      .+||||||.|+||+.   ..||+|++++|+|||+|+++.+.++ ++++++|+++.+. +.+.+.+..   .  ..+.+..
T Consensus         1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~~~   72 (217)
T TIGR00453         1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKIVA   72 (217)
T ss_pred             CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEEeC
Confidence            379999999999975   5799999999999999999999998 7999999998753 444444432   1  1122222


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV  157 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v  157 (361)
                      .  ..+..++++.+...+.  +.+.++++.||+  +....++.+++.+.+.  .++++..+..+    ++...+++ |.+
T Consensus        73 ~--~~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~~----~v~~~~~~-g~~  141 (217)
T TIGR00453        73 G--GDTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVAD----TLKRVEAD-GFI  141 (217)
T ss_pred             C--CchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEeccc----eEEEEcCC-Cce
Confidence            2  1234578888887762  334899999999  4445589999887664  23344444322    34444543 667


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeCHhhHhhccC---CCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHH
Q 018060          158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~  231 (361)
                      ..+.++..   -.... +.|.|+...+..+..   +......|....+...+ .+..+..+....++++|+|+..+..
T Consensus       142 ~~~~~r~~---~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~  215 (217)
T TIGR00453       142 VETVDREG---LWAAQ-TPQAFRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA  215 (217)
T ss_pred             eecCChHH---eEEEe-CCCcccHHHHHHHHHHHHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence            77766321   12223 369999998765531   11111133344443333 4666666666779999999977754

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.66  E-value=7.2e-15  Score=134.59  Aligned_cols=202  Identities=14%  Similarity=0.135  Sum_probs=135.8

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .+||||||.|+||..   ..||+|++++|+|||+|+++.+.+.+ +++++|++++......+.+..   ... .+.+.. 
T Consensus         7 ~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~-~v~~v~-   78 (378)
T PRK09382          7 SLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIK-FVTLVT-   78 (378)
T ss_pred             eEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCC-eEEEeC-
Confidence            599999999999954   68999999999999999999999987 799999998754433332211   111 122222 


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                       ...+..++++.+++.+.  . +.+++..+|. +. ...++.+++.+.+.  .+++...+..++..|+...++.  ..+.
T Consensus        79 -gG~~r~~SV~~gL~~l~--~-d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR--~~l~  150 (378)
T PRK09382         79 -GGATRQESVRNALEALD--S-EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDR--EGLK  150 (378)
T ss_pred             -CCchHHHHHHHHHHhcC--C-CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCc--ccEE
Confidence             22345788999988873  2 4899999998 33 34478888876543  4677777777777776545554  3443


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      .+ ++|+.+....           +++... ....+ .|..+.+...+ ++..++-+..|..+++|+|+..++..+
T Consensus       151 ~~-QTPQ~f~~~~-----------l~~a~~-~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l  212 (378)
T PRK09382        151 LI-QTPQLSRTKT-----------LKAAAD-GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL  212 (378)
T ss_pred             EE-ECCCCCCHHH-----------HHHHHh-CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence            33 7777553322           111111 11122 34455555444 577777788999999999999998654

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.65  E-value=4.4e-15  Score=124.52  Aligned_cols=119  Identities=17%  Similarity=0.298  Sum_probs=88.0

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      +||||||.|+||++     ||+|+|++|+|||+|+++.+.+.++++++|++++..+.+.+.+.   ...++.+.... ..
T Consensus         2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~~v~~v~~~-~~   72 (188)
T TIGR03310         2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHSNITLVHNP-QY   72 (188)
T ss_pred             eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCCCeEEEECc-Ch
Confidence            79999999999975     99999999999999999999998999999999987554443332   22345444332 22


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCce
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEA  132 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~  132 (361)
                      ..|...+++.+....  .+.+.+++++||+ + ....++.+++.+...+..+
T Consensus        73 ~~g~~~si~~~l~~~--~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~  122 (188)
T TIGR03310        73 AEGQSSSIKLGLELP--VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI  122 (188)
T ss_pred             hcCHHHHHHHHhcCC--CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence            357888888888722  2234899999999 3 3445888888776654433

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=99.65  E-value=1.2e-14  Score=125.57  Aligned_cols=212  Identities=16%  Similarity=0.175  Sum_probs=133.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEe
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICS   78 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~   78 (361)
                      |.+||||||.|+||+.   ..||+|++++|+|||+|+++.+.+++ +++++|+++.+. +.+.+.+..   .. ..+.+.
T Consensus         4 ~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~~~~   76 (227)
T PRK00155          4 VYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKVTVV   76 (227)
T ss_pred             eEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-CceEEe
Confidence            3599999999999964   56999999999999999999999875 899999998754 333333221   10 122222


Q ss_pred             cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCe
Q 018060           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGK  156 (361)
Q Consensus        79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~  156 (361)
                      ..  +.+..++++.+...+.  +.+.++++.||+  +....++.+++.+.+.+  ..+.+.+..++    +...+++ |.
T Consensus        77 ~~--~~~~~~sv~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~----~~~v~~~-g~  145 (227)
T PRK00155         77 AG--GAERQDSVLNGLQALP--DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKDT----IKRSDDG-GG  145 (227)
T ss_pred             CC--cchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecccc----EEEEcCC-Cc
Confidence            22  2246889998888773  234899999999  44456899999876653  33333343332    2222433 56


Q ss_pred             EeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCC---CccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHH
Q 018060          157 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP---TSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRL  232 (361)
Q Consensus       157 v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~---~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~  232 (361)
                      +.++.+..    .-...-+.|.|+.+.+..+....   ..+..|....+...+ ++..+..+..+.+|+|++||..+...
T Consensus       146 ~~~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~  221 (227)
T PRK00155        146 IVDTPDRS----GLWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAI  221 (227)
T ss_pred             eeecCChH----HheeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHH
Confidence            66554321    11223347899988877553211   111223233333333 46566655668899999999888765


Q ss_pred             HH
Q 018060          233 YL  234 (361)
Q Consensus       233 ~l  234 (361)
                      +.
T Consensus       222 ~~  223 (227)
T PRK00155        222 LK  223 (227)
T ss_pred             HH
Confidence            43

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.63  E-value=2e-14  Score=116.73  Aligned_cols=185  Identities=18%  Similarity=0.288  Sum_probs=131.7

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      -+||||||+|+||+.     +|.|+|+.|+|++.++++....++++++++++++.. +.......    ..++.++.+++
T Consensus         7 ~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~~~~v~npd   77 (199)
T COG2068           7 AAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLGVTVVVNPD   77 (199)
T ss_pred             EEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCCeEEEeCcc
Confidence            389999999999986     999999999999999999999999999999999862 22222222    22466666665


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      .. .|.+.|+..+.......+ +-+++..||+  +...++..+++.+.++ ..+..-.+             ...     
T Consensus        78 ~~-~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~-~~~v~p~~-------------~g~-----  136 (199)
T COG2068          78 YA-QGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR-GAAVRPVY-------------GGA-----  136 (199)
T ss_pred             hh-hhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc-Cceeeeec-------------cCC-----
Confidence            54 499999999999886443 4899999999  5666799999887766 22111100             000     


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEE--e-cceEEEcCCHHHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMV--L-PGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~--~-~~~~~~i~t~~dy~~a~~~~  233 (361)
                               .     .+=.+|++..|..+..-..+   .=.+.++.+.....+.  . .+...|+|||+||.++...+
T Consensus       137 ---------r-----G~Pv~~~~~~~~~l~~l~GD---~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~  197 (199)
T COG2068         137 ---------R-----GHPVLLSKDLFPALARLSGD---VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL  197 (199)
T ss_pred             ---------c-----CCceeechhHHHHHhhcCCc---hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence                     0     11256777777766544333   1256666666544443  3 57899999999999998754

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.63  E-value=9.2e-15  Score=115.99  Aligned_cols=116  Identities=15%  Similarity=0.150  Sum_probs=93.1

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe---------ccEEcCCC
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGWHS  313 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~~~  313 (361)
                      .+++++.+.++++|++++.|.+.+++..++.||++|.|+.++.|. ++.|+++|.|++++.+.         +++|++++
T Consensus         3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~   82 (139)
T cd03350           3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDV   82 (139)
T ss_pred             ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCC
Confidence            356777888888888888888888888888888888888888886 68888888888888886         36888999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcC-cEE---ccCceeecccCCC-cc
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNG-GVV---LPHKEIKSSILKP-EI  359 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i---~~~~~v~~~~~~~-~~  359 (361)
                      .|++++.|.+++.||+++.|++++++.+ ..+   .++..+.+++|++ ++
T Consensus        83 ~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~~~~~~v~~~~~~~~~~  133 (139)
T cd03350          83 FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPGSVV  133 (139)
T ss_pred             EECCCCEECCCCEECCCCEEcCCCEEcCCeEecccCcccEEecccCCCCEE
Confidence            9999999988888888888888888752 222   6778888899988 44

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.63  E-value=3.1e-15  Score=128.00  Aligned_cols=118  Identities=11%  Similarity=0.192  Sum_probs=85.3

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe---------ccEEcC
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGW  311 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~  311 (361)
                      ...+.+++.+.++++|++++.|.+. ++..++.||++|.|+.++.|+ ++.||++|.|+.++.|.         +++|++
T Consensus       100 ~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgD  178 (269)
T TIGR00965       100 GFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED  178 (269)
T ss_pred             CEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECC
Confidence            3345566666666666666666654 454567778888888877777 57788888888887773         478999


Q ss_pred             CCEECCCcEEcCceEECCCeEECCceEEc-CcEEccC---ceeecccCCCccc
Q 018060          312 HSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPH---KEIKSSILKPEIV  360 (361)
Q Consensus       312 ~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~---~~v~~~~~~~~~~  360 (361)
                      +|.||++|.|.++++||++++|++++++. +..|.+.   ..+.+.+|+++++
T Consensus       179 nv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv  231 (269)
T TIGR00965       179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVV  231 (269)
T ss_pred             CCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEE
Confidence            99999999999999999999999999985 3444433   3334566776654

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PLN02296 carbonate dehydratase

Probab=99.63  E-value=5.4e-15  Score=128.65  Aligned_cols=107  Identities=19%  Similarity=0.289  Sum_probs=93.1

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEe-----------ceEEccCcEECCCCEEecc
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSS  307 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~  307 (361)
                      ...+.+++.+.+++.|++++.|+++|+|.+.   +.||++|.|+++|.|.           +++|+++|+|+++|+|.++
T Consensus        58 ~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~  137 (269)
T PLN02296         58 DAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGC  137 (269)
T ss_pred             CCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCC
Confidence            3456677777888899999999999988755   4899999999999995           5899999999999999999


Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~  348 (361)
                      +|+++|.||.++.|.++++||++++|++++++.....+|..
T Consensus       138 ~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~  178 (269)
T PLN02296        138 TVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSG  178 (269)
T ss_pred             EECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCC
Confidence            99999999999999999999999999999999765433333

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.63  E-value=6.9e-15  Score=119.71  Aligned_cols=101  Identities=11%  Similarity=0.093  Sum_probs=89.9

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEEC---CCcEECCCCEECCCcEEec-----------eEEccCcEECCCCEEecc
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR-----------CTVMRGVRIKKHACISSS  307 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~~  307 (361)
                      ...+++++.+.++++|++++.|++++.|.   ++++||++|.|+++|.|.+           +.|++++.++.++++.++
T Consensus         5 ~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~   84 (164)
T cd04646           5 GAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEAL   84 (164)
T ss_pred             CcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEee
Confidence            45677888888999999999999999985   4589999999999999975           458889999999999999


Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  342 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~  342 (361)
                      +||++|+||.++.|.++++||++++||+++++...
T Consensus        85 ~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~  119 (164)
T cd04646          85 KIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSS  119 (164)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence            99999999999999999999999999999999754

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02472 uncharacterized protein

Probab=99.62  E-value=7.4e-15  Score=126.11  Aligned_cols=110  Identities=17%  Similarity=0.158  Sum_probs=94.4

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEe-----------ceEEccCcEECCCCEEecc
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSS  307 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~  307 (361)
                      ...+.+++.+.+++.|++++.|+++++|.++   .+||++|.|+++|.|.           +++|+++|+||++|+|.++
T Consensus        65 ~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~  144 (246)
T PLN02472         65 DAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSC  144 (246)
T ss_pred             CCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCe
Confidence            3457788888889999999999999988754   7899999999999994           5899999999999999999


Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEEcCcE-EccCceee
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEIK  351 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~-i~~~~~v~  351 (361)
                      +|++++.||.++.|.++++||+++.|++++.+..+. +.++..+.
T Consensus       145 ~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~  189 (246)
T PLN02472        145 TIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWA  189 (246)
T ss_pred             EEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEE
Confidence            999999999999999999999999999999987544 44444443

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.62  E-value=7e-15  Score=122.50  Aligned_cols=104  Identities=20%  Similarity=0.292  Sum_probs=89.5

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEe-----ceEEccCcEECCCCEEeccEEcCCC
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS  313 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~  313 (361)
                      ...+++++.+.+++.||+++.|+++|+|.++   ++|+.+|.|+++|.|.     +++|++++.||+++++.+++|++++
T Consensus        16 ~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v   95 (196)
T PRK13627         16 TAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDA   95 (196)
T ss_pred             CeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCC
Confidence            4467778888888888888888888888643   5788888888888884     5899999999999999999999999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcCcEEc
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNGGVVL  345 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~  345 (361)
                      .||.++.+.++++||+++.|++++++......
T Consensus        96 ~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~i  127 (196)
T PRK13627         96 LVGMNSVIMDGAVIGEESIVAAMSFVKAGFQG  127 (196)
T ss_pred             EECcCCccCCCcEECCCCEEcCCCEEeCCcCc
Confidence            99999999999999999999999999765544

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.61  E-value=1.2e-14  Score=122.23  Aligned_cols=103  Identities=25%  Similarity=0.402  Sum_probs=72.3

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCce
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT  325 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~  325 (361)
                      ++.+++.++++|+++++|+++++|++++.||++|.|++++.|.++.|++++.|++++.+.+++|++++.|++++.|.+++
T Consensus         7 ~~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~   86 (193)
T cd03353           7 PETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT   86 (193)
T ss_pred             CCeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCcc
Confidence            45556667777777777777777777777777777777777777777777777777777777777777777777777667


Q ss_pred             EECCCeEECCceEEcCcEEccCc
Q 018060          326 ILGEDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       326 ~ig~~~~v~~~~~i~~~~i~~~~  348 (361)
                      +|++++.|++++.+.++.++++.
T Consensus        87 ~Ig~~~~Ig~~~~i~~s~ig~~~  109 (193)
T cd03353          87 VLGEGVHIGNFVEIKKSTIGEGS  109 (193)
T ss_pred             EECCCCEECCcEEEecceEcCCC
Confidence            77777776666666554444443

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.61  E-value=2e-14  Score=119.73  Aligned_cols=107  Identities=26%  Similarity=0.389  Sum_probs=83.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||.|+||++     ||+|++++|+|||+|+++.+.+. +++++|+++.+...    ...    .++.+.... 
T Consensus         1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~----~~~~~v~~~-   65 (181)
T cd02503           1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER----YAL----LGVPVIPDE-   65 (181)
T ss_pred             CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh----cCCcEeeCC-
Confidence            6799999999999976     99999999999999999999988 89999999986543    111    134443322 


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHH
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFH  125 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~  125 (361)
                      ....|...+++.+...+.   .+.+++++||+ + ....++.+++.+
T Consensus        66 ~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          66 PPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             CCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence            245688999999998873   34899999999 3 344578887766

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.60  E-value=1.8e-13  Score=111.96  Aligned_cols=218  Identities=22%  Similarity=0.288  Sum_probs=160.0

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      +||+|.-.+|||..      |+|.-++|+|||.|+.++..++|.++++|.+..  +.+.+.+.++    |.++.......
T Consensus         6 viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~----G~~avmT~~~h   73 (247)
T COG1212           6 VIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAF----GGEAVMTSKDH   73 (247)
T ss_pred             EEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHh----CCEEEecCCCC
Confidence            68888888899866      999999999999999999999999999998877  6688888775    67777666666


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCeee-c-cCHHHHHHHHHHcCCceEEEEEEccCC-----CCceeEEEcCCCC
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGEASIMVTKVDEP-----SKYGVVVMEESTG  155 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~-~-~~l~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~~~  155 (361)
                      +.|+ +.+..+...+.-.+.+-++=+.||..+ + ..+..+++.+++++.++..++.+..+.     ++.-.+..|.+ |
T Consensus        74 ~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~-g  151 (247)
T COG1212          74 QSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKE-G  151 (247)
T ss_pred             CCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCC-C
Confidence            6677 666666666633334467788999933 3 347888888888877777666665332     23335566776 8


Q ss_pred             eEeeeeecCCCC-------CCCeEEEEEEEeCHhhHhhcc-CCCCcccc----chHHhHHhcCceEEEEecceE-EEcCC
Q 018060          156 KVEKFVEKPKLF-------VGNKINAGIYLLNPAVLDRIE-LRPTSIEK----EVFPKIALEGKLFAMVLPGFW-MDIGQ  222 (361)
Q Consensus       156 ~v~~~~ek~~~~-------~~~~~~~Giyi~~~~~l~~l~-~~~~~~~~----d~l~~l~~~~~i~~~~~~~~~-~~i~t  222 (361)
                      +.+.|...|-..       ..-+...|+|.|++++++++. ..+..++.    +-|+.|-...++.+....... ..+||
T Consensus       152 ~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT  231 (247)
T COG1212         152 YALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDT  231 (247)
T ss_pred             cEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCC
Confidence            999998765421       133568999999999998774 34444432    345556566678888777544 88999


Q ss_pred             HHHHHHHHHHHH
Q 018060          223 PRDYITGLRLYL  234 (361)
Q Consensus       223 ~~dy~~a~~~~l  234 (361)
                      ++|+-++.+.+.
T Consensus       232 ~EDLe~v~~~~~  243 (247)
T COG1212         232 PEDLERVRKILS  243 (247)
T ss_pred             HHHHHHHHHHHH
Confidence            999998876554

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.60  E-value=3e-13  Score=115.87  Aligned_cols=203  Identities=22%  Similarity=0.248  Sum_probs=138.4

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEe-c-
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS-Q-   79 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~-~-   79 (361)
                      |||+|+|.++||.      +|.+++++|+||+.|+++.+.+++ +++|+|.+..  +++.+..+++    |.++.+. + 
T Consensus         2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~~----g~~v~~~r~~   69 (222)
T TIGR03584         2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKSY----GASVPFLRPK   69 (222)
T ss_pred             EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHHc----CCEeEEeChH
Confidence            7999999999993      599999999999999999999987 6777775543  4566555543    5555442 1 


Q ss_pred             --CCCCCCCchHHHHHHhhccC-CCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCC
Q 018060           80 --ETEPLGTAGPLALARDKLID-DTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST  154 (361)
Q Consensus        80 --~~~~~g~~~al~~~~~~~~~-~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~  154 (361)
                        .....++.+++..+...+.. ...|.++++.+|.  +...+++.+++.+.+.+++..+.+.+...+..+.. ..+++ 
T Consensus        70 ~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~-~~~~~-  147 (222)
T TIGR03584        70 ELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAF-KLKEN-  147 (222)
T ss_pred             HHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHhe-EECCC-
Confidence              23456788999999887732 1234799999999  33456999999988766777777766544333332 33333 


Q ss_pred             CeEeeeeecC----CC--CCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecc-eEEEcCCHHHHH
Q 018060          155 GKVEKFVEKP----KL--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYI  227 (361)
Q Consensus       155 ~~v~~~~ek~----~~--~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~-~~~~i~t~~dy~  227 (361)
                      |+...+....    ++  ......+.++|+++++.+..-.  .      ++     .++...+.++. ...|||+++||.
T Consensus       148 g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~--~------~~-----~~~~~~~~m~~~~~iDID~~~D~~  214 (222)
T TIGR03584       148 GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG--P------IF-----SPHSIPIVLPRHLVQDIDTLEDWE  214 (222)
T ss_pred             CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC--C------cc-----CCCcEEEEeCccceeCCCCHHHHH
Confidence            5554443211    11  1122468999999999774411  0      11     45667777765 578999999998


Q ss_pred             HHHHH
Q 018060          228 TGLRL  232 (361)
Q Consensus       228 ~a~~~  232 (361)
                      .+...
T Consensus       215 ~ae~l  219 (222)
T TIGR03584       215 RAELL  219 (222)
T ss_pred             HHHHH
Confidence            88653

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.59  E-value=1.8e-14  Score=102.87  Aligned_cols=79  Identities=46%  Similarity=0.969  Sum_probs=73.9

Q ss_pred             EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060          257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  335 (361)
Q Consensus       257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~  335 (361)
                      +++++.|++++.|+++++|+++|.|+++++|.++++++++.|++++.|.++++++++.|++++.+.+++++|+++++++
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~   80 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD   80 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence            5788899999999999999999999999999999999999999999999999999999999999998889999888763

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=99.59  E-value=6.7e-14  Score=117.82  Aligned_cols=112  Identities=25%  Similarity=0.314  Sum_probs=81.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||.|+||+.    .||+|+|++|+|||+|+++.+. .++++++|+++.+.+.+    .++    ++.+.....
T Consensus         4 ~~~vILA~G~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~~----~~~~v~~~~   70 (193)
T PRK00317          4 ITGVILAGGRSRRMGG----VDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARY----AAF----GLPVIPDSL   70 (193)
T ss_pred             ceEEEEcCCCcccCCC----CCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHH----Hhc----CCcEEeCCC
Confidence            5799999999999953    5999999999999999999998 66999999988653322    111    334432222


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHc
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAH  128 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~  128 (361)
                      ....|...+++.+....  . .+.+++++||+ +.. ..++.+++.+.+.
T Consensus        71 ~~~~g~~~~i~~~l~~~--~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~  117 (193)
T PRK00317         71 ADFPGPLAGILAGLKQA--R-TEWVLVVPCDTPFIPPDLVARLAQAAGKD  117 (193)
T ss_pred             CCCCCCHHHHHHHHHhc--C-CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence            22357788888888754  2 34899999999 434 4478888765433

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.59  E-value=3.5e-14  Score=114.42  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=95.6

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEec-----eEEccCcEECCCCEEeccEEcCCC
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS  313 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~  313 (361)
                      ...+++++.+.+++.||+++.|++++.|.+.   ++||++|.|+++|.|..     ++|++++.|++++++.+++|++++
T Consensus         6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~   85 (154)
T cd04650           6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV   85 (154)
T ss_pred             CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence            4567888889999999999999999998765   69999999999999974     899999999999999999999999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcCc-EEccCcee
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNGG-VVLPHKEI  350 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~-~i~~~~~v  350 (361)
                      .|+.++.+.++++||+++++++++.+.+. .+.+...+
T Consensus        86 ~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~  123 (154)
T cd04650          86 IVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLV  123 (154)
T ss_pred             EEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence            99999999989999999999999988753 44444443

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.59  E-value=1.7e-14  Score=124.87  Aligned_cols=115  Identities=15%  Similarity=0.189  Sum_probs=81.9

Q ss_pred             cCCcEEecceEEcCCCEECCCcEEC-----CCcEECCCCEECCCcEEec-eEEccCcEECCCCEEec---------cEEc
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIG-----PDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISS---------SIIG  310 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------~~i~  310 (361)
                      .+++.+.+++++++++.|++++.|.     .+++||++|.|+.++.|++ +.||++|.|+.++.|.+         ++|+
T Consensus       101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIg  180 (272)
T PRK11830        101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIE  180 (272)
T ss_pred             cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEc
Confidence            3444455555555555555555443     4556666666666666663 57777777777776653         6899


Q ss_pred             CCCEECCCcEEcCceEECCCeEECCceEEc-CcEEc---cCceeecccCCCccc
Q 018060          311 WHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVL---PHKEIKSSILKPEIV  360 (361)
Q Consensus       311 ~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-~~~i~---~~~~v~~~~~~~~~~  360 (361)
                      ++|.||.++.|..+++||++++|++++.+. +..|.   ++.++.+.+|+++++
T Consensus       181 Dnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svv  234 (272)
T PRK11830        181 DNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVV  234 (272)
T ss_pred             CCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEE
Confidence            999999999998889999999999999995 55555   356777788888775

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.58  E-value=3.7e-14  Score=115.86  Aligned_cols=96  Identities=23%  Similarity=0.359  Sum_probs=89.2

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEc
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE  322 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~  322 (361)
                      .+.+++.+.++++|++++.|+++++|.++++||++|.|++++.|. +++|+++|.|+++++|.+++|++++.|++++.+.
T Consensus         7 ~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~   86 (163)
T cd05636           7 TVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG   86 (163)
T ss_pred             ccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe
Confidence            457788999999999999999999999999999999999999998 7999999999999999999999999999999887


Q ss_pred             CceEECCCeEECCceEEc
Q 018060          323 NMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       323 ~~~~ig~~~~v~~~~~i~  340 (361)
                      + ++|++++.|++++.+.
T Consensus        87 ~-siIg~~~~I~~~~~i~  103 (163)
T cd05636          87 D-SVLGENVNLGAGTITA  103 (163)
T ss_pred             c-CEECCCCEECCCcEEc
Confidence            7 8899999999888774

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.58  E-value=6.1e-14  Score=126.35  Aligned_cols=123  Identities=17%  Similarity=0.246  Sum_probs=76.3

Q ss_pred             eEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEcc
Q 018060          216 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR  294 (361)
Q Consensus       216 ~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~  294 (361)
                      .+.-++.|..-+.....++.... .....+++++.+++++.|++++.|+++++|++++.||++|+|+++|.|+ ++.|++
T Consensus        66 ~~~~v~~p~~~~~~~~~~~~~~~-~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~  144 (324)
T TIGR01853        66 AALVVKDPYLAFAKVAELFDPPP-KREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGD  144 (324)
T ss_pred             eEEEECCHHHHHHHHHHHhcccc-cccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCC
Confidence            35556677644433322232111 1234467777777777777777777777777777777777777777775 566777


Q ss_pred             CcEECCCCEEe-ccEEcCCCEECCCcEEc--------------------CceEECCCeEECCceEE
Q 018060          295 GVRIKKHACIS-SSIIGWHSTVGQWARVE--------------------NMTILGEDVHVCDEIYS  339 (361)
Q Consensus       295 ~~~i~~~~~i~-~~~i~~~~~ig~~~~i~--------------------~~~~ig~~~~v~~~~~i  339 (361)
                      +|.|+++++|. +++||++|.|+++++|+                    +.++||+++.||+++.+
T Consensus       145 ~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I  210 (324)
T TIGR01853       145 GSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTI  210 (324)
T ss_pred             CceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEE
Confidence            77777777776 46677777776666664                    13666666666666655

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.58  E-value=2e-14  Score=102.40  Aligned_cols=79  Identities=35%  Similarity=0.561  Sum_probs=72.9

Q ss_pred             EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060          256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  335 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~  335 (361)
                      +|++++.|++++.|.+ ++||++|+|++++.|.+++|+++++|++++.+.+++|++++.|++++.+.+++++|+++.+++
T Consensus         1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~   79 (79)
T cd03356           1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED   79 (79)
T ss_pred             CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence            4788999999999964 999999999999999999999999999999999999999999999999998899999888864

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.58  E-value=3.4e-14  Score=124.46  Aligned_cols=117  Identities=14%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECC------------CcEECCCCEECCCcEEe--------ceEEccCcEECCCCE
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLS--------RCTVMRGVRIKKHAC  303 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~  303 (361)
                      .+.+.+.+.+++.|++++.|+++++|++            ++.||++|.|+++|.|.        ++.|++++.|++++.
T Consensus        36 ~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~  115 (254)
T TIGR01852        36 ELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSH  115 (254)
T ss_pred             EECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCE
Confidence            3445555555566666666666666652            45666666666666664        345666666666666


Q ss_pred             E-eccEEcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060          304 I-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       304 i-~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~  360 (361)
                      | ++++||+++.|++++.+..+++||++++|+.++.+.       ++.+.+++.|.+++++++++
T Consensus       116 I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~  180 (254)
T TIGR01852       116 IAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLV  180 (254)
T ss_pred             EccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcEE
Confidence            6 346777777777777777777777777777777763       45667777777788877654

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.57  E-value=1.4e-13  Score=125.79  Aligned_cols=85  Identities=26%  Similarity=0.413  Sum_probs=40.5

Q ss_pred             CcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe--------------------ccEEcCCCEECCCcEEcC-
Q 018060          266 GCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS--------------------SSIIGWHSTVGQWARVEN-  323 (361)
Q Consensus       266 ~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~i~~~~~ig~~~~i~~-  323 (361)
                      +|+|++++.||++|.|++++.|. ++.|+++|.|+++++|+                    +++|++++.||+++.|.. 
T Consensus       142 ~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~  221 (343)
T PRK00892        142 GAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRG  221 (343)
T ss_pred             CCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecC
Confidence            33333333444444444444443 24455556666666653                    245666666666665531 


Q ss_pred             ---ceEECCCeEECCceEEc-CcEEccCcee
Q 018060          324 ---MTILGEDVHVCDEIYSN-GGVVLPHKEI  350 (361)
Q Consensus       324 ---~~~ig~~~~v~~~~~i~-~~~i~~~~~v  350 (361)
                         +++||++++++..+.|. ++.|++++.+
T Consensus       222 ~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i  252 (343)
T PRK00892        222 ALDDTVIGEGVKIDNLVQIAHNVVIGRHTAI  252 (343)
T ss_pred             ccccceeCCCCEEeCCeEEccCCEECCCcEE
Confidence               24555555544444442 3344444333

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.57  E-value=4.2e-14  Score=122.89  Aligned_cols=52  Identities=10%  Similarity=0.084  Sum_probs=31.8

Q ss_pred             EcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060          309 IGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       309 i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ||++++|+.++.+..++.||++++++.++.+.       ++.+.+++.|.+++|+++++
T Consensus       122 IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i~  180 (255)
T PRK12461        122 IGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCMM  180 (255)
T ss_pred             ECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEeccCCCCeEE
Confidence            33333344444444455666666666665552       46777888888899998765

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.57  E-value=2.9e-14  Score=101.97  Aligned_cols=79  Identities=24%  Similarity=0.508  Sum_probs=73.4

Q ss_pred             EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCc
Q 018060          257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE  336 (361)
Q Consensus       257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~  336 (361)
                      |+++++|++++.|. ++.||++|.|+++++|.+++|++++.|+++++|.++++++++.|++++.+.+ ++||+++.|+++
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~-~ii~~~~~i~~~   79 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD-CLVGSGYRVEAG   79 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc-CEECCCcEeCCC
Confidence            68888999999995 7999999999999999999999999999999999999999999999999987 999999999887


Q ss_pred             e
Q 018060          337 I  337 (361)
Q Consensus       337 ~  337 (361)
                      +
T Consensus        80 ~   80 (81)
T cd04652          80 T   80 (81)
T ss_pred             C
Confidence            5

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.57  E-value=4.6e-14  Score=123.63  Aligned_cols=71  Identities=8%  Similarity=0.026  Sum_probs=39.1

Q ss_pred             eEEccCcEECCCCEE-eccEEcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060          290 CTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       290 ~~i~~~~~i~~~~~i-~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +.|+++|.|++++.| +++.||+++.|+.++.+..+++||+++.|+.++.+.       ++.+.+++.|.+++++++++
T Consensus       103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~  181 (254)
T cd03351         103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIA  181 (254)
T ss_pred             eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCCCeEE
Confidence            344444444444444 234555555555555555556666666666666653       45556666666677665543

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=8e-15  Score=135.87  Aligned_cols=99  Identities=21%  Similarity=0.366  Sum_probs=90.2

Q ss_pred             cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeE
Q 018060          253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVH  332 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~  332 (361)
                      .+.|-++.+++...|.++.+++||.++.||.++.|.||+||.||.||+|++|.+|.||++|+||+||.|.. |+||++++
T Consensus       314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~-aii~d~v~  392 (673)
T KOG1461|consen  314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDH-AIICDDVK  392 (673)
T ss_pred             cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEee-eEeecCcE
Confidence            67888999999999999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             ECCceEEc-CcEEccCceeec
Q 018060          333 VCDEIYSN-GGVVLPHKEIKS  352 (361)
Q Consensus       333 v~~~~~i~-~~~i~~~~~v~~  352 (361)
                      |++++.++ |++++.+.++.+
T Consensus       393 i~~~~~l~~g~vl~~~VVv~~  413 (673)
T KOG1461|consen  393 IGEGAILKPGSVLGFGVVVGR  413 (673)
T ss_pred             eCCCcccCCCcEEeeeeEeCC
Confidence            99999995 555555555555

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.56  E-value=2.3e-13  Score=115.34  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=93.8

Q ss_pred             ceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEc
Q 018060          215 GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  293 (361)
Q Consensus       215 ~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~  293 (361)
                      ..+..+..+....+....+. .........+.+.+.+.+++.|++++.|+++++|++++.||++|.|++++.|. ++.|+
T Consensus        61 ~~iiai~~~~~~~~i~~~l~-~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig  139 (201)
T TIGR03570        61 DLVVAIGDNKLRRRLFEKLK-AKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIG  139 (201)
T ss_pred             EEEEEcCCHHHHHHHHHHHH-hCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence            34555555555444443322 22222334566777888888888888888888888888888888888888887 68888


Q ss_pred             cCcEECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          294 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       294 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +++.|+.++++.. +.|++++.||.++.+.+++.||+++++++++++..
T Consensus       140 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~  188 (201)
T TIGR03570       140 DYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK  188 (201)
T ss_pred             CCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence            8888888888884 78888888888888888888888888888888765

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=99.56  E-value=1.8e-13  Score=118.50  Aligned_cols=214  Identities=11%  Similarity=0.163  Sum_probs=129.5

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      .+||||||.|+||+.   ..||+|++++|+|||+|+++.+.+++ +++++|+++... ..+.+++.+++... ..+.++.
T Consensus         4 ~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~-~~~~~v~   79 (230)
T PRK13385          4 ELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVAD-QRVEVVK   79 (230)
T ss_pred             EEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCC-CceEEcC
Confidence            589999999999974   57999999999999999999998764 899999998743 33444554432110 0122222


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV  157 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v  157 (361)
                        .+.+..++++.+...+.  ..+.++++.||. +.. ..++++++.+.+.+.  .+.+.+..+    .+... .+ +.+
T Consensus        80 --~g~~r~~sv~~gl~~~~--~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~~~d----ti~~~-~~-~~~  147 (230)
T PRK13385         80 --GGTERQESVAAGLDRIG--NEDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVEVKD----TVKRV-KD-KQV  147 (230)
T ss_pred             --CCchHHHHHHHHHHhcc--CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc----eEEEE-cC-Cee
Confidence              22234588888888773  233678889999 444 448999998776543  233333322    12222 22 444


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeCHhhHhhccC---CCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      ....++.    .-+.--+.|.|+.+.+...-+   .......|....+.. ..++..+.-+.....|++|+|+..+...+
T Consensus       148 ~~~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l  223 (230)
T PRK13385        148 IETVDRN----ELWQGQTPQAFELKILQKAHRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAIL  223 (230)
T ss_pred             EeccCHH----HHhhhcCCceeeHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHH
Confidence            3333211    111222467888776654311   111112232333333 33466666666788999999999987655


Q ss_pred             HH
Q 018060          234 LD  235 (361)
Q Consensus       234 l~  235 (361)
                      ..
T Consensus       224 ~~  225 (230)
T PRK13385        224 QG  225 (230)
T ss_pred             hh
Confidence            43

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.56  E-value=3.9e-14  Score=124.23  Aligned_cols=38  Identities=5%  Similarity=-0.041  Sum_probs=23.6

Q ss_pred             CceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          323 NMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       323 ~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++++||++++||.++.+       .++.|.+++.|.+++++++++
T Consensus       140 g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~~  184 (262)
T PRK05289        140 GHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLA  184 (262)
T ss_pred             cccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeEE
Confidence            34455555555555544       256677777888888877654

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.56  E-value=5.5e-14  Score=122.58  Aligned_cols=59  Identities=24%  Similarity=0.374  Sum_probs=27.8

Q ss_pred             CCcEEecceEEcCCCEECCCcEECCCcEECCCCE------ECCCcEEe-ceEEccCcEECCCCEEe
Q 018060          247 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV------VESGVRLS-RCTVMRGVRIKKHACIS  305 (361)
Q Consensus       247 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~------i~~~~~i~-~~~i~~~~~i~~~~~i~  305 (361)
                      +++.++++++|+++++||++++|+++++||++|.      |.+++.|. ++.||++|.|+++++|+
T Consensus       116 ~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG  181 (338)
T COG1044         116 KNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIG  181 (338)
T ss_pred             CCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEc
Confidence            3334444444444444444444444444444444      44444444 35555555555555555

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=99.55  E-value=1.8e-13  Score=114.51  Aligned_cols=115  Identities=20%  Similarity=0.309  Sum_probs=84.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||.|+||+.    .||+|++++|+|||+|+++.+.. .+++++|+++.....   +...   ..++.+.....
T Consensus         1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~   69 (186)
T TIGR02665         1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDAL   69 (186)
T ss_pred             CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCC
Confidence            5689999999999964    59999999999999999999976 489999988765322   1111   11344433322


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHHHHcC
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHG  129 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~-~l~~~~~~~~~~~  129 (361)
                      ....|+..+++.+.+.+  . .+.+++++||+ +... .++++++.+.+.+
T Consensus        70 ~~~~g~~~si~~al~~~--~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~  117 (186)
T TIGR02665        70 ADFPGPLAGILAGLRWA--G-TDWVLTVPCDTPFLPEDLVARLAAALEASD  117 (186)
T ss_pred             CCCCCCHHHHHHHHHhc--C-CCeEEEEecCCCcCCHHHHHHHHHHhhccC
Confidence            34578999999999877  2 34899999999 4443 4778887765433

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.55  E-value=1.3e-13  Score=116.08  Aligned_cols=116  Identities=17%  Similarity=0.407  Sum_probs=71.2

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-ccEEcCCCEECCCcE--
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWAR--  320 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~--  320 (361)
                      .+++++.+.+++.|++++.|++++.|+ ++.||++|.|++++.+.++.|++++.|+++++|. +++|++++.|++++.  
T Consensus        23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~  101 (193)
T cd03353          23 VIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIK  101 (193)
T ss_pred             EECCCCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEe
Confidence            445555555666666666666666663 4466777777776666666666666666666665 244444443333222  


Q ss_pred             --------------------------------Ec-------CceEECCCeEECCceEE-------cCcEEccCceeeccc
Q 018060          321 --------------------------------VE-------NMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSI  354 (361)
Q Consensus       321 --------------------------------i~-------~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~  354 (361)
                                                      +.       ..++||++++++.++.+       .++.+.+++.|.+++
T Consensus       102 ~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v  181 (193)
T cd03353         102 KSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDV  181 (193)
T ss_pred             cceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEcccc
Confidence                                            21       12456666666666554       367778888899999


Q ss_pred             CCCccc
Q 018060          355 LKPEIV  360 (361)
Q Consensus       355 ~~~~~~  360 (361)
                      |+++++
T Consensus       182 ~~~~~v  187 (193)
T cd03353         182 PPGALA  187 (193)
T ss_pred             CCCCEE
Confidence            998875

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.55  E-value=8.7e-14  Score=121.91  Aligned_cols=96  Identities=16%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-------------ceEEccCcEECCCCEEec----
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS----  306 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~----  306 (361)
                      .+++.+.+.++++|++++.|+++|+|++++.||++|.|++++.|.             ++.|+++|.|+++|+|..    
T Consensus        19 ~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~   98 (254)
T cd03351          19 EIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQ   98 (254)
T ss_pred             EECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccC
Confidence            345555555666666666666666666667777777777777775             567888888888888763    


Q ss_pred             ----cEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060          307 ----SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       307 ----~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                          ++||+++.|++++.|..+++||+++.++.++.+
T Consensus        99 ~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i  135 (254)
T cd03351          99 GGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATL  135 (254)
T ss_pred             CCCceEECCCCEECCCCEECCCCEECCCcEECCCccc
Confidence                567777777777777555666666666655544

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.55  E-value=3e-13  Score=114.01  Aligned_cols=100  Identities=18%  Similarity=0.292  Sum_probs=77.5

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCc
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWA  319 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~  319 (361)
                      ...+++.+.+.+++.+++++.|+++|+|++++.||++|.|+.++.|. ++.|+++|.|+.++.+.+ ++|++++.||.++
T Consensus        84 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~  163 (197)
T cd03360          84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGA  163 (197)
T ss_pred             ceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCC
Confidence            34455666777777788888888888888788888888888888876 577888888888888765 7888888888888


Q ss_pred             EEcCceEECCCeEECCceEEcC
Q 018060          320 RVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       320 ~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .+.++++||+++.+++++++..
T Consensus       164 ~v~~~~~ig~~~~v~~~~~v~~  185 (197)
T cd03360         164 TIIQGVTIGAGAIIGAGAVVTK  185 (197)
T ss_pred             EEcCCCEECCCCEECCCCEEcC
Confidence            8887788888888887777654

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.54  E-value=1.2e-13  Score=111.51  Aligned_cols=105  Identities=21%  Similarity=0.323  Sum_probs=93.4

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEec-----eEEccCcEECCCCEEeccEEcCCC
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS  313 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~  313 (361)
                      ...+++.+.|.+++++++++.|+++++|.++   ++||++|.|+++|.|.+     +.|++++.|+.+|.+.+++|++++
T Consensus         5 ~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~   84 (153)
T cd04645           5 SAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNC   84 (153)
T ss_pred             CeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCC
Confidence            4567888889899999999999999998753   69999999999999986     599999999999999999999999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcCcEEcc
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  346 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~  346 (361)
                      .|+.++.+.++++|++++.+++++.+......+
T Consensus        85 ~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~  117 (153)
T cd04645          85 LIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIP  117 (153)
T ss_pred             EECCCCEEcCCCEECCCCEECCCCEECCCCEeC
Confidence            999999999889999999999999886543333

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.54  E-value=1.3e-13  Score=120.19  Aligned_cols=17  Identities=24%  Similarity=0.442  Sum_probs=10.6

Q ss_pred             ceEECCCeEECCceEEc
Q 018060          324 MTILGEDVHVCDEIYSN  340 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i~  340 (361)
                      .++||++|.||+++.|.
T Consensus       202 ~V~Igd~VeIGanT~Id  218 (338)
T COG1044         202 RVIIGDDVEIGANTTID  218 (338)
T ss_pred             eEEECCceEEcccceec
Confidence            35666666666666664

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.54  E-value=1.7e-13  Score=112.13  Aligned_cols=109  Identities=19%  Similarity=0.341  Sum_probs=93.7

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECC----CcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEec-cEEcC
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS-SIIGW  311 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-~~i~~  311 (361)
                      ...+++++.+.+++.|+++++|++++.|+.    ++.||++|.|++++.|.     ++.|++++.|++++.|.+ ++||+
T Consensus         8 ~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~   87 (167)
T cd00710           8 SAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGD   87 (167)
T ss_pred             CeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECC
Confidence            456778888888888888888888888865    47899999999999994     588999999999999997 89999


Q ss_pred             CCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceee
Q 018060          312 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  351 (361)
Q Consensus       312 ~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~  351 (361)
                      ++.||.++.|.+ +.||+++.|++++.+.+..+.++..+.
T Consensus        88 ~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~~~~i~~~~~v~  126 (167)
T cd00710          88 NCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVP  126 (167)
T ss_pred             CCEECCCCEEEC-CEECCCCEEcCCCEEeCCEeCCCCEEC
Confidence            999999999986 999999999999999876666666653

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=99.54  E-value=9.1e-14  Score=116.69  Aligned_cols=123  Identities=14%  Similarity=0.175  Sum_probs=86.7

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      +.+||||||+|+||+.     ||.|++++|+|||+|+++.+.+.++++++|+++.+.+.+...........++.+.....
T Consensus         1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T TIGR03202         1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRD   75 (190)
T ss_pred             CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCC
Confidence            4689999999999976     89999999999999999988888899999999876432211111100112344443333


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcC
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHG  129 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~  129 (361)
                      . ..|...+++.+.+.+...+.+.+++++||+  +....+..+++...++.
T Consensus        76 ~-~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~  125 (190)
T TIGR03202        76 A-CEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRP  125 (190)
T ss_pred             h-hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence            2 347889999998876332345899999999  33344788887765433

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.53  E-value=7.4e-14  Score=99.54  Aligned_cols=79  Identities=20%  Similarity=0.369  Sum_probs=72.0

Q ss_pred             EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060          256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  335 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~  335 (361)
                      +|+++++|++++.|. ++.|+++|.|+++++|.+++|++++.|+++++|.+++|++++.|++++.+.+++++++++.+|+
T Consensus         1 ~ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~   79 (79)
T cd05787           1 VIGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD   79 (79)
T ss_pred             CccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence            368889999999995 7999999999999999999999999999999999999999999999999988888888888774

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.53  E-value=4e-13  Score=113.45  Aligned_cols=111  Identities=21%  Similarity=0.272  Sum_probs=80.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      +.+||||||+|+||+.     +|+|++++|+|||+|+++.+... +++++|++++. +.......     .++.+.... 
T Consensus         8 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~-----~~~~~i~~~-   74 (200)
T PRK02726          8 LVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLP-----PGCHWLREP-   74 (200)
T ss_pred             ceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhcc-----CCCeEecCC-
Confidence            3599999999999965     89999999999999999999765 78999988642 22222211     133333222 


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHH
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKA  127 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~  127 (361)
                      ....|...+++.+...+.  . +.+++++||+ + ....++.+++.+..
T Consensus        75 ~~~~G~~~si~~~l~~~~--~-~~vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         75 PPSQGPLVAFAQGLPQIK--T-EWVLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             CCCCChHHHHHHHHHhCC--C-CcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            223588999999998873  2 4899999999 3 33447888877543

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.53  E-value=2.7e-13  Score=115.28  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=32.3

Q ss_pred             EcCCCEECCCcEEcCceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          309 IGWHSTVGQWARVENMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       309 i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      |++++.|+.++.+.+++.||++++|+.++.+       .++.+.+++.+.+++++++++
T Consensus       135 ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~~  193 (205)
T cd03352         135 IGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYV  193 (205)
T ss_pred             ECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCCCEE
Confidence            3333444333333344666666666666665       257778888888888888775

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.52  E-value=1.7e-13  Score=123.48  Aligned_cols=20  Identities=15%  Similarity=0.192  Sum_probs=15.8

Q ss_pred             CcEEccCceeecccCCCccc
Q 018060          341 GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       341 ~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++.+++++.|.+++++++++
T Consensus       277 ~~~ig~~s~V~~~v~~~~~~  296 (324)
T TIGR01853       277 NVTIGAKSGVTKSIPPPGVY  296 (324)
T ss_pred             CCEEccCCEeCCcCCCCcEE
Confidence            57778888888888888764

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.52  E-value=1.7e-13  Score=120.16  Aligned_cols=60  Identities=32%  Similarity=0.497  Sum_probs=25.8

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEE
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI  304 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  304 (361)
                      +++++.|++.+.|++++.|+++|.|++++.||++|.|++++.|. ++.||++|.|+++++|
T Consensus         5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I   65 (262)
T PRK05289          5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI   65 (262)
T ss_pred             cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence            34444444444444444444444444444444444444444443 3444444444444444

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.51  E-value=2.2e-13  Score=114.55  Aligned_cols=97  Identities=18%  Similarity=0.170  Sum_probs=72.1

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec---------------
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS---------------  306 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~---------------  306 (361)
                      ...+++++.+. ++.||+++.|+++|.|. ++.||.++.|+.++.+.++.||++|.|++++.|.+               
T Consensus         8 ~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~   85 (204)
T TIGR03308         8 EPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTY   85 (204)
T ss_pred             CCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccc
Confidence            44677788885 47889999999999884 88999999999999998899999999999988852               


Q ss_pred             -----------------------cEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060          307 -----------------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       307 -----------------------~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~  340 (361)
                                             ++||+++.||.++.|.+++.||++++|++++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~  142 (204)
T TIGR03308        86 RAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVT  142 (204)
T ss_pred             ccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence                                   3455555555555555555555555555555554

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.51  E-value=2.5e-13  Score=113.23  Aligned_cols=102  Identities=21%  Similarity=0.307  Sum_probs=68.6

Q ss_pred             cCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec-----cEEcCCCEECCCcEEcCceEEC
Q 018060          258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTILG  328 (361)
Q Consensus       258 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~ig  328 (361)
                      +++++|++++.|.+++.||++|.|+.+|.|.    .++|+++|.||++|+|+.     ++|++++.||+++.+.+ ++||
T Consensus        14 ~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g-~vIG   92 (196)
T PRK13627         14 HPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG-CVIG   92 (196)
T ss_pred             CCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee-EEEC
Confidence            4444444444443444455555555555553    256788888888888864     68999999999988876 8888


Q ss_pred             CCeEECCceEEc-------CcEEccCceeeccc--CCCccc
Q 018060          329 EDVHVCDEIYSN-------GGVVLPHKEIKSSI--LKPEIV  360 (361)
Q Consensus       329 ~~~~v~~~~~i~-------~~~i~~~~~v~~~~--~~~~~~  360 (361)
                      +++.||.++.+.       ++.+.+++.|.+++  |+++++
T Consensus        93 ~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~  133 (196)
T PRK13627         93 RDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLL  133 (196)
T ss_pred             CCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEE
Confidence            888888777663       46667777777755  666665

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.50  E-value=1.6e-13  Score=109.13  Aligned_cols=111  Identities=23%  Similarity=0.268  Sum_probs=89.7

Q ss_pred             CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-----cEEcCCCEECCCcEEc
Q 018060          248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVE  322 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~  322 (361)
                      ...|+++++|.|+|.|-.++.|+.++.|++++++....  ..-.||+++.|++||+|+.     ++||+++.||+++.|.
T Consensus        11 ~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH   88 (176)
T COG0663          11 SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH   88 (176)
T ss_pred             CCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE
Confidence            44566778888888888888888888888888887765  5678999999999999995     5999999999999999


Q ss_pred             CceEECCCeEECCceEEc-------CcEEccCceeec--ccCCCcccC
Q 018060          323 NMTILGEDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIVM  361 (361)
Q Consensus       323 ~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~--~~~~~~~~~  361 (361)
                      + |.||+++.||.++++.       ++.|++++.|..  .+|.+++++
T Consensus        89 G-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~  135 (176)
T COG0663          89 G-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVV  135 (176)
T ss_pred             E-eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEee
Confidence            8 9999999999998874       455566666654  666666653

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.50  E-value=5e-13  Score=117.08  Aligned_cols=97  Identities=11%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-------------ceEEccCcEECCCCEEec---
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS---  306 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~---  306 (361)
                      ..+++.+.+.+++.|++++.|+++|.|.+++.||++|.|++++.|.             +++||++|.|+++|+|..   
T Consensus        17 ~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~   96 (254)
T TIGR01852        17 VEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTA   96 (254)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCccc
Confidence            3455566666666666666666777776677788888888888886             577888888888888873   


Q ss_pred             -----cEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060          307 -----SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       307 -----~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                           ++||+++.|+.++.|..+|.||+++.+++++.+
T Consensus        97 ~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i  134 (254)
T TIGR01852        97 SGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATL  134 (254)
T ss_pred             CCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEE
Confidence                 467777777777777555666666666666555

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.49  E-value=3.7e-13  Score=108.84  Aligned_cols=102  Identities=16%  Similarity=0.265  Sum_probs=63.2

Q ss_pred             cCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEE-----eccEEcCCCEECCCcEEcCceEEC
Q 018060          258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARVENMTILG  328 (361)
Q Consensus       258 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~i~~~~~ig~~~~i~~~~~ig  328 (361)
                      ++++.|+++++|.+++.||++|.|+++|.|.    .+.|+++|.|+++|+|     .+++|++++.|++++.+.+ ++||
T Consensus         4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig   82 (155)
T cd04745           4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG-CTIG   82 (155)
T ss_pred             CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-CEEC
Confidence            4444455555554555566666666666554    3677788888888877     4577888888888777665 6666


Q ss_pred             CCeEECCceEEc-------CcEEccCceeec--ccCCCccc
Q 018060          329 EDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIV  360 (361)
Q Consensus       329 ~~~~v~~~~~i~-------~~~i~~~~~v~~--~~~~~~~~  360 (361)
                      +++.|+.++.+.       ++.+.+++.+..  .+++++++
T Consensus        83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v  123 (155)
T cd04745          83 RNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLI  123 (155)
T ss_pred             CCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEE
Confidence            666666665553       344555555544  45555543

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.49  E-value=5e-13  Score=108.68  Aligned_cols=106  Identities=17%  Similarity=0.281  Sum_probs=80.9

Q ss_pred             ccCCcEEe--cceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEec-------------eEEccCcEECCCCEEec
Q 018060          245 LATGANIV--GNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS  306 (361)
Q Consensus       245 ~~~~~~i~--~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~  306 (361)
                      ++..+.|.  +++++++++.|+++|.|.++   +.||++|.|+++|.|..             +.|++++.|++++++.+
T Consensus        10 i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~   89 (161)
T cd03359          10 VSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNA   89 (161)
T ss_pred             ecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEe
Confidence            44444453  26667777777777776643   57777777777777753             57999999999999999


Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcE-EccCcee
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEI  350 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~-i~~~~~v  350 (361)
                      ++|++++.||+++.|..+++|++++.+++++.+.... +.|.+.+
T Consensus        90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv  134 (161)
T cd03359          90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVV  134 (161)
T ss_pred             eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEE
Confidence            9999999999999999999999999999998886544 4444433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.49  E-value=5e-13  Score=114.47  Aligned_cols=105  Identities=19%  Similarity=0.319  Sum_probs=79.4

Q ss_pred             EEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe-ccEEcCCCEECCCcEEcC--------ce
Q 018060          256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVEN--------MT  325 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~--------~~  325 (361)
                      +++.++.|++++.|.+++.||++++|+.++.|. ++.|+++|.|++++.|. +++||++|.||.++.+.+        ++
T Consensus        82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v  161 (231)
T TIGR03532        82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPV  161 (231)
T ss_pred             ccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCe
Confidence            456677777777777777777777777777776 57788888888888886 588888888888888863        46


Q ss_pred             EECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          326 ILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       326 ~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +||++++||+++.+       .++.+.+++.|.+++++++++
T Consensus       162 ~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv  203 (231)
T TIGR03532       162 VIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVV  203 (231)
T ss_pred             EECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEE
Confidence            77777777766666       356677788888888888765

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.48  E-value=3e-13  Score=112.30  Aligned_cols=104  Identities=20%  Similarity=0.300  Sum_probs=71.6

Q ss_pred             EEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEE-----eccEEcCCCEECCCcEEcCceE
Q 018060          256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARVENMTI  326 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~i~~~~~ig~~~~i~~~~~  326 (361)
                      .|+++++|++++.|.++++||++|.|+++|.|.    ..+|+++|.||++|+|     .+++|++++.|++++.|.+ |+
T Consensus        10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~-si   88 (192)
T TIGR02287        10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG-CI   88 (192)
T ss_pred             cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC-CE
Confidence            345555555555555556666666666666664    4688999999999998     4589999999999988887 88


Q ss_pred             ECCCeEECCceEEc-------CcEEccCceeec--ccCCCccc
Q 018060          327 LGEDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIV  360 (361)
Q Consensus       327 ig~~~~v~~~~~i~-------~~~i~~~~~v~~--~~~~~~~~  360 (361)
                      ||+++.||.++.+.       ++.+.+++.|..  .++.++++
T Consensus        89 Ig~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~  131 (192)
T TIGR02287        89 VGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLV  131 (192)
T ss_pred             ECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEE
Confidence            88888888776663       445555555554  45555543

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.48  E-value=8.7e-13  Score=104.63  Aligned_cols=83  Identities=12%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe---------ceEEccCcEECCCCEEec-cEEcCCCEECCCcEEcC
Q 018060          254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVEN  323 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~  323 (361)
                      ++.|++++.|++++.|++++.||++|.|+.++.+.         +++|++++.|++++.|.+ +.|++++.|++++.|.+
T Consensus        31 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~  110 (139)
T cd03350          31 GAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ  110 (139)
T ss_pred             CCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcC
Confidence            33333334444444444444444444444444443         144555555555555532 45555555555555555


Q ss_pred             ceEECCCeEECCceEE
Q 018060          324 MTILGEDVHVCDEIYS  339 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i  339 (361)
                      +..|+++   ++++++
T Consensus       111 ~~~I~~~---~~~~~v  123 (139)
T cd03350         111 STPIYDR---ETGEIY  123 (139)
T ss_pred             CeEeccc---CcccEE
Confidence            5555555   444444

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.48  E-value=3.5e-13  Score=128.69  Aligned_cols=117  Identities=17%  Similarity=0.393  Sum_probs=69.9

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-cEEcCCCEECCC---
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQW---  318 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~---  318 (361)
                      ..+++++.|.+++.||+++.|+++|.|. ++.||++|.|+++|.|.++.|+++|.||++++|.+ ++|++++.||++   
T Consensus       268 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i  346 (451)
T TIGR01173       268 VEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVET  346 (451)
T ss_pred             CEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceee
Confidence            3455666666666666666666666663 56666666666666665555555555555555542 344433333332   


Q ss_pred             -------------------------cEEcC-------------ceEECCCeEECCceEE-------cCcEEccCceeecc
Q 018060          319 -------------------------ARVEN-------------MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSS  353 (361)
Q Consensus       319 -------------------------~~i~~-------------~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~  353 (361)
                                               +.|+.             +++||+++.||.++.+       .++.|++++.|.++
T Consensus       347 ~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~  426 (451)
T TIGR01173       347 KNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKD  426 (451)
T ss_pred             cCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECcc
Confidence                                     22221             2455566666655543       36788888899999


Q ss_pred             cCCCccc
Q 018060          354 ILKPEIV  360 (361)
Q Consensus       354 ~~~~~~~  360 (361)
                      +|+++++
T Consensus       427 v~~~~~~  433 (451)
T TIGR01173       427 VPEGALA  433 (451)
T ss_pred             CCCCcEE
Confidence            9998875

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PLN02296 carbonate dehydratase

Probab=99.47  E-value=5.7e-13  Score=116.06  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=70.6

Q ss_pred             EEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-----------ccEEcCCCEECCC
Q 018060          250 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-----------SSIIGWHSTVGQW  318 (361)
Q Consensus       250 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~i~~~~~ig~~  318 (361)
                      .+.++++|++++.+.+++.|+++|.|+++|+|...+  .++.|+++|.|+++|+|.           +++||+++.||++
T Consensus        54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~--~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~  131 (269)
T PLN02296         54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHS  131 (269)
T ss_pred             ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC--CceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCC
Confidence            344445555555554444444444444444444331  245788888888888885           5789999999998


Q ss_pred             cEEcCceEECCCeEECCceEEc-------CcEEccCceeecc--cCCCccc
Q 018060          319 ARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSS--ILKPEIV  360 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~--~~~~~~~  360 (361)
                      |.|.+ |+||+++.||.++.+.       ++.|.+++.|..+  ++.++++
T Consensus       132 avI~g-~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~  181 (269)
T PLN02296        132 AVLHG-CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVW  181 (269)
T ss_pred             ceecC-CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEE
Confidence            88765 7777777777666663       4566677777665  7777765

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.47  E-value=4.8e-13  Score=103.35  Aligned_cols=97  Identities=13%  Similarity=0.122  Sum_probs=69.4

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      .+.+.+.+.+++.|+++++|++++.|++++.||++|.|++++.+.|+.+. +..+..++.+.+++|++++.||+++.+.+
T Consensus         6 ~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~-~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~   84 (119)
T cd03358           6 IIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP-RSKIYRKWELKGTTVKRGASIGANATILP   84 (119)
T ss_pred             EECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCC-ccccccccccCCcEECCCcEECcCCEEeC
Confidence            34555566666666666666666666666666666666666666654433 33344466788899999999999999988


Q ss_pred             ceEECCCeEECCceEEcC
Q 018060          324 MTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i~~  341 (361)
                      +++||+++.|++++.+..
T Consensus        85 ~~~ig~~~~i~~~~~v~~  102 (119)
T cd03358          85 GVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             CcEECCCCEEccCCEEeC
Confidence            899999999998888865

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.47  E-value=3.6e-12  Score=110.57  Aligned_cols=186  Identities=18%  Similarity=0.254  Sum_probs=112.4

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh--HHHHHHHHHhhhccCcEEEEec
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~--~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |||||+|.++|| +     +|+|++++|+||++|+++.+.+++ +++++|+++...  +.+.+++...    ++.+...+
T Consensus         2 aiIlA~G~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~----~v~~v~~~   71 (233)
T cd02518           2 AIIQARMGSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL----GVKVFRGS   71 (233)
T ss_pred             EEEeeCCCCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc----CCeEEECC
Confidence            799999999999 3     499999999999999999999987 899999998764  5566555432    44443332


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV  157 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v  157 (361)
                      ..   +.......+...   .+.+.++++.||+  +....++++++.+..++.+.+.....                   
T Consensus        72 ~~---~~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~-------------------  126 (233)
T cd02518          72 EE---DVLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLP-------------------  126 (233)
T ss_pred             ch---hHHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCCC-------------------
Confidence            21   222222222221   2234899999999  33445899998887655444321000                   


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCC-CccccchHHhHHhcCc--eEEEEecc-------eEEEcCCHHHHH
Q 018060          158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-TSIEKEVFPKIALEGK--LFAMVLPG-------FWMDIGQPRDYI  227 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~-~~~~~d~l~~l~~~~~--i~~~~~~~-------~~~~i~t~~dy~  227 (361)
                                .+..+.-+.-+|+...+..+.... .....+.+..++++..  +....++.       ...|+|||+||.
T Consensus       127 ----------~g~Pv~~~~~~~~~~~~~~l~~~~gd~g~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~  196 (233)
T cd02518         127 ----------RTYPDGLDVEVFTRDALERAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFE  196 (233)
T ss_pred             ----------CCCCCceEEEEEEHHHHHHHHHhCCChhhhcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHH
Confidence                      111122355677777776654222 1122233322233322  32222222       378999999997


Q ss_pred             HHHHHH
Q 018060          228 TGLRLY  233 (361)
Q Consensus       228 ~a~~~~  233 (361)
                      .+...+
T Consensus       197 ~~~~~~  202 (233)
T cd02518         197 LIKEIY  202 (233)
T ss_pred             HHHHHH
Confidence            776543

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.46  E-value=1.2e-12  Score=110.14  Aligned_cols=104  Identities=14%  Similarity=0.199  Sum_probs=87.3

Q ss_pred             EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEc-------------
Q 018060          256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE-------------  322 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~-------------  322 (361)
                      .+++++.|+++|.| .++.||++++|+++|+|.++.||++++|++++.+.+++||++|.|++++.+.             
T Consensus         4 ~~~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~   82 (204)
T TIGR03308         4 LLSPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH   82 (204)
T ss_pred             ccCCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence            46777888888888 4789999999999999999999999999999999999999999999998875             


Q ss_pred             ------------------------CceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060          323 ------------------------NMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       323 ------------------------~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~  360 (361)
                                              .+++||+++.||.++.+.       ++.+.+++.|.+++++++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~  151 (204)
T TIGR03308        83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIV  151 (204)
T ss_pred             cccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEE
Confidence                                    256777777777777763       56777788888888888764

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.46  E-value=9.8e-13  Score=107.08  Aligned_cols=49  Identities=22%  Similarity=0.305  Sum_probs=22.8

Q ss_pred             cCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec
Q 018060          258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS  306 (361)
Q Consensus       258 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~  306 (361)
                      ++++.|.+++.|.+++.||++|.|++++.|.    .++||++|.|+++|+|.+
T Consensus         3 ~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~   55 (164)
T cd04646           3 APGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVN   55 (164)
T ss_pred             CCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEec
Confidence            3444444444444444444444444444442    235555555555555543

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.46  E-value=1.1e-12  Score=119.93  Aligned_cols=114  Identities=18%  Similarity=0.263  Sum_probs=61.5

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe--------------------ceEEccCcEECCCCEEe
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS--------------------RCTVMRGVRIKKHACIS  305 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~--------------------~~~i~~~~~i~~~~~i~  305 (361)
                      .+++.|.+++.||+++.|+++++|.+++.||++|+|++++.|+                    +++|++++.||.+++|.
T Consensus       140 ~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~  219 (343)
T PRK00892        140 GAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTID  219 (343)
T ss_pred             CCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEe
Confidence            3344444444444444444444444455566666666666663                    35667777777776663


Q ss_pred             -----ccEEcCCCEECCCc------------------EEcCceEECCCeEECCceEEc-------CcEEccCceeecccC
Q 018060          306 -----SSIIGWHSTVGQWA------------------RVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSIL  355 (361)
Q Consensus       306 -----~~~i~~~~~ig~~~------------------~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~  355 (361)
                           +++||+++.|+..+                  .+.++++||+++.++.++.+.       ++.+++++.|.++++
T Consensus       220 ~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~  299 (343)
T PRK00892        220 RGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIP  299 (343)
T ss_pred             cCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccC
Confidence                 23344333333333                  333345555555555555542       466777777777887


Q ss_pred             C-Ccc
Q 018060          356 K-PEI  359 (361)
Q Consensus       356 ~-~~~  359 (361)
                      + +.+
T Consensus       300 ~~~~~  304 (343)
T PRK00892        300 EPGEY  304 (343)
T ss_pred             CCCeE
Confidence            7 544

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=99.46  E-value=2.6e-12  Score=118.28  Aligned_cols=185  Identities=16%  Similarity=0.257  Sum_probs=113.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||+|+||+.    .||+|++++|+|||+|+++.+... +++++|+++.+.+.+.+++.      ++.+.....
T Consensus         6 i~~VILAgG~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~~~~~~~~~------~~~~i~d~~   74 (366)
T PRK14489          6 IAGVILAGGLSRRMNG----RDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPARYQDLFP------GLPVYPDIL   74 (366)
T ss_pred             ceEEEEcCCcccCCCC----CCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCHHHHHhhcc------CCcEEecCC
Confidence            4599999999999952    499999999999999999999864 89999977765444443322      123322222


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ....|...+++.+.+.+  . .+.+++++||+ +.. ..++.+++.+..++.++++.  .            .+  ++  
T Consensus        75 ~g~~G~~~si~~gl~~~--~-~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~--~------------~g--~~--  133 (366)
T PRK14489         75 PGFQGPLSGILAGLEHA--D-SEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP--H------------DG--ER--  133 (366)
T ss_pred             CCCCChHHHHHHHHHhc--C-CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE--e------------cC--CC--
Confidence            22257888899988876  2 23799999999 333 34778887655444432221  0            00  00  


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec---ceEEEcCCHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP---GFWMDIGQPRDYITGLR  231 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~---~~~~~i~t~~dy~~a~~  231 (361)
                                .   ..=+-+++++++..+......-...+... +.+..+....++   ..+.+++||+||.++..
T Consensus       134 ----------g---~Pl~aiy~~~~~~~l~~~l~~G~~~l~~~-l~~~~~~~v~~~~~~~~~~nINTpeDl~~l~~  195 (366)
T PRK14489        134 ----------A---HPLFALYHRSCLPALRRYLAEGERRLFDF-FQRQRVRYVDLSTQKDAFFNVNTPEDLEQLRA  195 (366)
T ss_pred             ----------c---eeeEEEEcHHHHHHHHHHHHhCCccHHHH-HHhCCcEEEeccCCccccccCCCHHHHHHHhh
Confidence                      0   01112457777766642111111122222 233334344433   35789999999987754

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.46  E-value=5.6e-12  Score=109.57  Aligned_cols=207  Identities=14%  Similarity=0.212  Sum_probs=118.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      .+||||||.|+||+.   ..||+|++++|+|+|+|+++.+.+. ++++++|+++.+. +.++..+..+    +..+.+..
T Consensus        26 ~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~----~~~i~~v~   98 (252)
T PLN02728         26 SVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI----DVPLKFAL   98 (252)
T ss_pred             EEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc----CCceEEcC
Confidence            589999999999975   6899999999999999999999885 7999999999753 3344444332    33344332


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCC--e--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCC
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--V--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG  155 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D--~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~  155 (361)
                        ...+..++++.+...+.. +  ..+|+.+|  .  +....+..+++...+.+  +.+...+..+    .+...+++ +
T Consensus        99 --gg~~r~~SV~~gl~~l~~-~--~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~~d----tik~v~~~-~  166 (252)
T PLN02728         99 --PGKERQDSVFNGLQEVDA-N--SELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPVKA----TIKEANSD-S  166 (252)
T ss_pred             --CCCchHHHHHHHHHhccC-C--CCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecchh----hEEEecCC-C
Confidence              223457889988887742 2  33455555  4  33344788888776654  3444444333    22223332 3


Q ss_pred             eEeeeeecCCCCCCCe-EEEEEEEeCHhhHhhc-c---CCCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHH
Q 018060          156 KVEKFVEKPKLFVGNK-INAGIYLLNPAVLDRI-E---LRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITG  229 (361)
Q Consensus       156 ~v~~~~ek~~~~~~~~-~~~Giyi~~~~~l~~l-~---~~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a  229 (361)
                      .+......     +.+ .--.=..|+.+.+... +   .....+ .|-...+...+ ++...+-+...+-|.+|+|+..+
T Consensus       167 ~v~~t~~R-----~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~-TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a  240 (252)
T PLN02728        167 FVVKTLDR-----KRLWEMQTPQVIKPELLRRGFELVEREGLEV-TDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVA  240 (252)
T ss_pred             ceeeccCh-----HHeEEEeCCccchHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCceEEEecCcccccCCCHHHHHHH
Confidence            33332110     000 0001123444433321 1   111111 22222332333 34444444466788999999888


Q ss_pred             HHHH
Q 018060          230 LRLY  233 (361)
Q Consensus       230 ~~~~  233 (361)
                      ...+
T Consensus       241 ~~~l  244 (252)
T PLN02728        241 ERIL  244 (252)
T ss_pred             HHHH
Confidence            7543

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.45  E-value=6.7e-13  Score=99.51  Aligned_cols=79  Identities=23%  Similarity=0.437  Sum_probs=68.9

Q ss_pred             CEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060          261 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       261 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~  340 (361)
                      ++|++++.| .+++||++|.|+ ++.|.+|+|++++.|+++++|.+|++++++.||.++.+.+ ++||+++.|++++.+.
T Consensus         2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~-siig~~~~Ig~~~~v~   78 (104)
T cd04651           2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR-AIIDKNVVIPDGVVIG   78 (104)
T ss_pred             ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe-EEECCCCEECCCCEEC
Confidence            567777777 578899999998 8899999999999999999999999999999999999975 9999999999998887


Q ss_pred             Cc
Q 018060          341 GG  342 (361)
Q Consensus       341 ~~  342 (361)
                      +.
T Consensus        79 ~~   80 (104)
T cd04651          79 GD   80 (104)
T ss_pred             CC
Confidence            64

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=99.45  E-value=3e-12  Score=106.26  Aligned_cols=110  Identities=23%  Similarity=0.347  Sum_probs=79.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||+|+++|| .     +|+|++++|+||++|++++|.... +.+++....+.+.   +..     ++.++.....
T Consensus         5 ~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~-~~vvi~~~~~~~~---~~~-----~g~~vv~D~~   69 (192)
T COG0746           5 MTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQV-DVVVISANRNQGR---YAE-----FGLPVVPDEL   69 (192)
T ss_pred             ceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccC-CEEEEeCCCchhh---hhc-----cCCceeecCC
Confidence            67999999999999 5     899999999999999999999884 4555555554332   221     1455543333


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccC-HHHHHHHHHHcC
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~-l~~~~~~~~~~~  129 (361)
                      ... |....++.+++...   .+.+++++||+ +...+ ++.+.+...+..
T Consensus        70 ~~~-GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~  116 (192)
T COG0746          70 PGF-GPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG  116 (192)
T ss_pred             CCC-CCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence            333 89999999998883   34899999999 44433 566666654433

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.45  E-value=1.2e-12  Score=113.89  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=27.7

Q ss_pred             cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-------------ceEEccCcEECCCCEEe
Q 018060          249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACIS  305 (361)
Q Consensus       249 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~  305 (361)
                      +.+.+++.|++++.|+++++|.+++.||++|.|++++.|+             ...||+++.|++++.|.
T Consensus        24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~   93 (255)
T PRK12461         24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH   93 (255)
T ss_pred             CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence            3333333344444444444444444455555555555553             24566666666666665

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.44  E-value=1.3e-12  Score=124.70  Aligned_cols=119  Identities=17%  Similarity=0.281  Sum_probs=81.8

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-cEEc----------
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIG----------  310 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~----------  310 (361)
                      ...+.+++.|.+++.|++++.|+++|+|+ +|+||++|+|++++.+.+++|++++.||+++++.. +.|+          
T Consensus       274 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~  352 (459)
T PRK14355        274 DTTIYPGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVE  352 (459)
T ss_pred             CCEEeCCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcc
Confidence            34456677777777788888888888884 78889999999999888888888888776666653 3333          


Q ss_pred             ------------------------CCCEECCCcEEc-------CceEECCCeEECCceEE-------cCcEEccCceeec
Q 018060          311 ------------------------WHSTVGQWARVE-------NMTILGEDVHVCDEIYS-------NGGVVLPHKEIKS  352 (361)
Q Consensus       311 ------------------------~~~~ig~~~~i~-------~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~  352 (361)
                                              +++.||.++.+.       .+++||+++.+|.++.+       .++.|.+++.|.+
T Consensus       353 ~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~  432 (459)
T PRK14355        353 TKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTK  432 (459)
T ss_pred             ccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence                                    333344333221       12456666666666554       3678888888899


Q ss_pred             ccCCCcccC
Q 018060          353 SILKPEIVM  361 (361)
Q Consensus       353 ~~~~~~~~~  361 (361)
                      +++++++++
T Consensus       433 ~v~~~~~~~  441 (459)
T PRK14355        433 DVPPDSLAI  441 (459)
T ss_pred             cCCCCcEEE
Confidence            999988753

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.44  E-value=9.8e-13  Score=94.04  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             ECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeecc
Q 018060          275 VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSS  353 (361)
Q Consensus       275 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~  353 (361)
                      ||+++.|++++.|.++.|+++|.|+++++|++++|++++.|++++.+.+ +++++++.|++++.+.++.+.++..+...
T Consensus         2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~-svi~~~~~i~~~~~v~~~ii~~~~~i~~~   79 (81)
T cd04652           2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN-CIIGNGAVIGEKCKLKDCLVGSGYRVEAG   79 (81)
T ss_pred             ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec-cEEeCCCEECCCCEEccCEECCCcEeCCC
Confidence            5677777777777778888888888888888888888888888888876 88888888888888888888877777654

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.44  E-value=3e-12  Score=107.92  Aligned_cols=111  Identities=17%  Similarity=0.242  Sum_probs=82.8

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCcEEc
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE  322 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~  322 (361)
                      +.....+.+.+.+++++.+++++.|+++++|+++++||++|.|. ++.|++++.||++|.|.. +++..++.||++|.|+
T Consensus        81 ~~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig  160 (197)
T cd03360          81 YRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG  160 (197)
T ss_pred             CccceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence            45667778888899998899999888888898888888888886 778887788877777754 5666666666666666


Q ss_pred             CceEECCCeEECCceEEcCcEEccCceeecccCCCccc
Q 018060          323 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       323 ~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      .++.|..++++++++     .+.++++|.+++++++++
T Consensus       161 ~~~~v~~~~~ig~~~-----~v~~~~~v~~~~~~~~~~  193 (197)
T cd03360         161 AGATIIQGVTIGAGA-----IIGAGAVVTKDVPDGSVV  193 (197)
T ss_pred             CCCEEcCCCEECCCC-----EECCCCEEcCCCCCCCEE
Confidence            555555555555544     556678888888888765

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.43  E-value=3.1e-12  Score=94.99  Aligned_cols=86  Identities=22%  Similarity=0.244  Sum_probs=75.4

Q ss_pred             cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCe
Q 018060          253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV  331 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~  331 (361)
                      +++++++++.|++++.+.++++||++|.|++++.|. ++.|+++|.|+.  .+.+++|++++.+++++.|.+ ++||+++
T Consensus        10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~-siIg~~v   86 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH-SYLGSWC   86 (101)
T ss_pred             CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee-eEECCCC
Confidence            578899999999999888889999999999999988 588899999964  678899999999999999986 9999999


Q ss_pred             EECCceEEcC
Q 018060          332 HVCDEIYSNG  341 (361)
Q Consensus       332 ~v~~~~~i~~  341 (361)
                      .|++++...+
T Consensus        87 ~ig~~~~~~~   96 (101)
T cd05635          87 NLGAGTNNSD   96 (101)
T ss_pred             EECCCceecc
Confidence            9999987754

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=3.1e-13  Score=118.62  Aligned_cols=91  Identities=19%  Similarity=0.272  Sum_probs=83.1

Q ss_pred             cEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEcc
Q 018060          267 CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  346 (361)
Q Consensus       267 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~  346 (361)
                      +.++..+.++++|.|++++.|..|+||++|.||+.++|.+|+++++++||+++.|.+ |+||.+++||+++.+.+|.|+|
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ien-sIIg~gA~Ig~gs~L~nC~Ig~  407 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIEN-SIIGMGAQIGSGSKLKNCIIGP  407 (433)
T ss_pred             eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceec-ceecccceecCCCeeeeeEecC
Confidence            456667899999999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             Cceee-cccCCCc
Q 018060          347 HKEIK-SSILKPE  358 (361)
Q Consensus       347 ~~~v~-~~~~~~~  358 (361)
                      +..|+ +..-.++
T Consensus       408 ~yvVeak~~~~~e  420 (433)
T KOG1462|consen  408 GYVVEAKGKHGGE  420 (433)
T ss_pred             CcEEccccccccc
Confidence            99998 4444333

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.43  E-value=1.8e-12  Score=100.13  Aligned_cols=100  Identities=17%  Similarity=0.225  Sum_probs=64.4

Q ss_pred             EcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcC----------CCEECCCcEEcCce
Q 018060          257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGW----------HSTVGQWARVENMT  325 (361)
Q Consensus       257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~----------~~~ig~~~~i~~~~  325 (361)
                      |++++.|+++++|++++.||++|.|++++.|. ++.|+++|.|++++.+.++.+..          ++.||+++.|+.++
T Consensus         1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~   80 (119)
T cd03358           1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA   80 (119)
T ss_pred             CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCC
Confidence            45677777777777777777777777777775 67888888888888887654333          33344444444434


Q ss_pred             EECCCeEECCceEEcCcEEccCceeecccCCCcccC
Q 018060          326 ILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM  361 (361)
Q Consensus       326 ~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~~~~~~  361 (361)
                      ++.+++.+++     ++.+.+++.+.++++++++++
T Consensus        81 ~v~~~~~ig~-----~~~i~~~~~v~~~i~~~~~~~  111 (119)
T cd03358          81 TILPGVTIGE-----YALVGAGAVVTKDVPPYALVV  111 (119)
T ss_pred             EEeCCcEECC-----CCEEccCCEEeCcCCCCeEEe
Confidence            4433333333     455566677777888887763

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.43  E-value=2.5e-12  Score=108.89  Aligned_cols=111  Identities=18%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      +.....+.+++.++++++|++++.|+++++|++++.||++|.|. ++.|++++.|++++.|+     .++.++.++.+++
T Consensus        84 ~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~-----~~~~i~~~~~ig~  158 (201)
T TIGR03570        84 YRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIA-----PGVTLSGGVVIGE  158 (201)
T ss_pred             CcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEEC-----CCCEEeCCcEECC
Confidence            34445666777777777777777777777777777777777775 56666666666655554     3444444444444


Q ss_pred             ceEECCCeEECCceEEc-CcEEccCceeecccCCCccc
Q 018060          324 MTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++.||.++.+.+++.+. ++.+.+++++.+++++++++
T Consensus       159 ~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~~~  196 (201)
T TIGR03570       159 GVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVV  196 (201)
T ss_pred             CCEECCCCEEeCCCEECCCCEECCCCEECCcCCCCCEE
Confidence            44444455555555553 45566677778888888775

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.42  E-value=2.7e-12  Score=99.41  Aligned_cols=95  Identities=20%  Similarity=0.269  Sum_probs=60.8

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcCCCEE
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTV  315 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i  315 (361)
                      .+++.+...+.|++++.|.+++++..++.||++|.|..  +|. ++.|+++|.||+++.|..         ..||++|+|
T Consensus         5 ~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~I   82 (147)
T cd04649           5 ADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLL   82 (147)
T ss_pred             cCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEE
Confidence            34555555555555555555555555555555555552  221 355666666666666652         468888888


Q ss_pred             CCCcEEcCceEECCCeEECCceEEcCcEE
Q 018060          316 GQWARVENMTILGEDVHVCDEIYSNGGVV  344 (361)
Q Consensus       316 g~~~~i~~~~~ig~~~~v~~~~~i~~~~i  344 (361)
                      |.++.|  +..||++++|++|+++...+.
T Consensus        83 G~ga~I--gv~IG~~~vIGaGsvV~k~t~  109 (147)
T cd04649          83 GANSGI--GISLGDNCIVEAGLYVTAGTK  109 (147)
T ss_pred             CCCCEE--eEEECCCCEECCCCEEeCCeE
Confidence            888888  488888888888887754443

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.42  E-value=1.5e-12  Score=124.25  Aligned_cols=118  Identities=20%  Similarity=0.357  Sum_probs=73.9

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-ccEEcCC--------
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWH--------  312 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~--------  312 (361)
                      ...+++++.|.+++.|++++.|+++|.|. +|.||++|.|++++.|.+|+|++++.|++++.|. ++.++++        
T Consensus       271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~  349 (456)
T PRK09451        271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVE  349 (456)
T ss_pred             CCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecccee
Confidence            44566677777777777777777777773 6777777777777777666666666666666555 2333333        


Q ss_pred             --------------------------CEECCCcEEcC-------ceEECCCeEECCceEE-------cCcEEccCceeec
Q 018060          313 --------------------------STVGQWARVEN-------MTILGEDVHVCDEIYS-------NGGVVLPHKEIKS  352 (361)
Q Consensus       313 --------------------------~~ig~~~~i~~-------~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~  352 (361)
                                                |.||+++.+.+       +++||+++.||.++.+       .++.+.+++.|.+
T Consensus       350 i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~  429 (456)
T PRK09451        350 MKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTR  429 (456)
T ss_pred             eeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEcc
Confidence                                      33333332210       1445566666655554       3677788888888


Q ss_pred             ccCCCccc
Q 018060          353 SILKPEIV  360 (361)
Q Consensus       353 ~~~~~~~~  360 (361)
                      ++++++++
T Consensus       430 ~v~~~~~~  437 (456)
T PRK09451        430 DVAENELV  437 (456)
T ss_pred             ccCCCCEE
Confidence            99888765

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.40  E-value=3.4e-12  Score=102.83  Aligned_cols=82  Identities=18%  Similarity=0.121  Sum_probs=58.9

Q ss_pred             EcCCCEECCCcEECCCcEECCCCEECCCcEEec----eEEccCcEECCCCEEec-----cEEcCCCEECCCcEEcCceEE
Q 018060          257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTIL  327 (361)
Q Consensus       257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~i  327 (361)
                      +.+++.|+++++|.+++.||++|.|++++.|..    ..|+++|.|+++|.|..     ++||+++.|++++.+.+ ++|
T Consensus         3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I   81 (154)
T cd04650           3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG-AKV   81 (154)
T ss_pred             cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC-cEE
Confidence            445555555555555666666666666666663    47888888888888875     67888888888888765 777


Q ss_pred             CCCeEECCceEE
Q 018060          328 GEDVHVCDEIYS  339 (361)
Q Consensus       328 g~~~~v~~~~~i  339 (361)
                      |+++.|+.++.+
T Consensus        82 g~~~~Ig~~~~i   93 (154)
T cd04650          82 GNYVIVGMGAIL   93 (154)
T ss_pred             CCCCEEcCCCEE
Confidence            777777777776

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.40  E-value=1.3e-11  Score=103.95  Aligned_cols=176  Identities=14%  Similarity=0.209  Sum_probs=104.6

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCC-cchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g-~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .+||||||+++||+.     ||+|++++| +|||+|+++.+... +++++|+++.+  ..    .     ...++.....
T Consensus        10 ~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~--~~----~-----~~~~~v~d~~   72 (196)
T PRK00560         10 PCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK--KF----E-----FNAPFLLEKE   72 (196)
T ss_pred             eEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch--hc----c-----cCCcEEecCC
Confidence            589999999999965     999999999 99999999999877 88999888751  11    1     0223322212


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccC-HHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ....|....+..+....   ..+.+++++||+ +...+ ++++..   +.+..+               +....+ ++  
T Consensus        73 ~~~~gpl~gi~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l~~---~~~~~~---------------~~~~~~-~~--  128 (196)
T PRK00560         73 SDLFSPLFGIINAFLTL---QTPEIFFISVDTPFVSFESIKKLCG---KENFSV---------------TYAKSP-TK--  128 (196)
T ss_pred             CCCCCcHHHHHHHHHhc---CCCeEEEEecCcCcCCHHHHHHHHh---cCCCCE---------------EEEccC-Cc--
Confidence            22345555555554433   234899999999 43433 455522   111111               111111 10  


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec--ceEEEcCCHHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRL  232 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~--~~~~~i~t~~dy~~a~~~  232 (361)
                                   ...-+.+|++..+..+.....+ ...-+..++++..+..+.++  +.+.|++||+||.++.+.
T Consensus       129 -------------~~Pl~al~~~~~~~~l~~~l~~-~~~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~  190 (196)
T PRK00560        129 -------------EHYLISLWHQSLLNALIYALKT-QNYRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQI  190 (196)
T ss_pred             -------------eeeeEEEEcHHHHHHHHHHHHh-CCccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHH
Confidence                         1122367888888776421100 00123444454444444443  467899999999877543

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.40  E-value=3.1e-12  Score=121.85  Aligned_cols=83  Identities=24%  Similarity=0.374  Sum_probs=71.4

Q ss_pred             EEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-ccEEcCCCEECCCcEEcCceEEC
Q 018060          250 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILG  328 (361)
Q Consensus       250 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~~~~ig  328 (361)
                      .+++.+.|++++.|+++++|++++.||++|+|+++++|.+++|+++|.||++++|. +++||++|.||+++.+.+ ++|+
T Consensus       264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~-~~i~  342 (446)
T PRK14353        264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN-AKLG  342 (446)
T ss_pred             EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEec-eEEC
Confidence            56778899999999999999999999999999999999999999999999999998 699999999999987754 4444


Q ss_pred             CCeEE
Q 018060          329 EDVHV  333 (361)
Q Consensus       329 ~~~~v  333 (361)
                      +++.+
T Consensus       343 ~~~~i  347 (446)
T PRK14353        343 EGAKV  347 (446)
T ss_pred             CCCEE
Confidence            44333

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.40  E-value=3.9e-12  Score=109.12  Aligned_cols=75  Identities=19%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             CCEECCCcEECCCcEECCCCEECCCcEEe-ceEEc--------cCcEECCCCEEec-cEEcCCCEECCCcEEcCceEECC
Q 018060          260 SAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM--------RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGE  329 (361)
Q Consensus       260 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~--------~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~  329 (361)
                      ++.|+++|.|..+++||++|+||++|.|. ++.|+        +.+.|+++|.|+. ++|.+++.||+++.|+.+++|+.
T Consensus       129 ga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~  208 (269)
T TIGR00965       129 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQ  208 (269)
T ss_pred             CcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECC
Confidence            34445555444444445555555544443 22232        2234444444432 33344444444444444444444


Q ss_pred             CeEEC
Q 018060          330 DVHVC  334 (361)
Q Consensus       330 ~~~v~  334 (361)
                      +++|.
T Consensus       209 ~~~I~  213 (269)
T TIGR00965       209 STKIY  213 (269)
T ss_pred             CCEEe
Confidence            44444

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=99.40  E-value=5.8e-11  Score=100.68  Aligned_cols=207  Identities=16%  Similarity=0.210  Sum_probs=119.1

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      .|||+|||.|+||+.   ..||++++++|+|+|.|+++.|.+.. +++|+|++.++. +.+++.+.+    ..+.+..- 
T Consensus         2 ~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----~~v~iv~G-   73 (221)
T PF01128_consen    2 AAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----KKVKIVEG-   73 (221)
T ss_dssp             EEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----TTEEEEE--
T ss_pred             EEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----CCEEEecC-
Confidence            589999999999987   78999999999999999999998864 899999999854 445554444    23443322 


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV  157 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v  157 (361)
                         ...-.++++.++..+.... +.+++.-+=- +. ...++++++..++. ..+.+.+.+..+    .+...+.+ +.+
T Consensus        74 ---G~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~D----Tik~v~~~-~~v  143 (221)
T PF01128_consen   74 ---GATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTD----TIKRVDDD-GFV  143 (221)
T ss_dssp             ----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SS----EEEEESTT-SBE
T ss_pred             ---ChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEeccc----cEEEEecC-Ccc
Confidence               2233588999998886433 4666665554 33 33478888887662 234445455433    34445544 666


Q ss_pred             eeeeecCCCCCCCeE-EEEEEEeCHhhHhhccCC----CCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHH
Q 018060          158 EKFVEKPKLFVGNKI-NAGIYLLNPAVLDRIELR----PTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~-~~Giyi~~~~~l~~l~~~----~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~  231 (361)
                      .+....     +.+. -=.=..|+.+.+...-++    ...+-.|. ..+.. ..++...+=+..-+-+.+|+|+.-+..
T Consensus       144 ~~tldR-----~~l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~tDda-sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~  217 (221)
T PF01128_consen  144 TETLDR-----SKLWAVQTPQAFRFELLLEAYEKADEEGFEFTDDA-SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEA  217 (221)
T ss_dssp             EEEETG-----GGEEEEEEEEEEEHHHHHHHHHTHHHHTHHHSSHH-HHHHHTTS-EEEEE--TTG----SHHHHHHHHH
T ss_pred             cccCCH-----HHeeeecCCCeecHHHHHHHHHHHHhcCCCccCHH-HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHH
Confidence            665432     1221 112356666655433211    11221222 12222 334544444445667899999887765


Q ss_pred             H
Q 018060          232 L  232 (361)
Q Consensus       232 ~  232 (361)
                      .
T Consensus       218 l  218 (221)
T PF01128_consen  218 L  218 (221)
T ss_dssp             H
T ss_pred             H
Confidence            4

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.39  E-value=2.8e-12  Score=122.31  Aligned_cols=104  Identities=14%  Similarity=0.297  Sum_probs=61.5

Q ss_pred             EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------ceEECC
Q 018060          257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGE  329 (361)
Q Consensus       257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~  329 (361)
                      |++++.|+++|+|++++.||.+|+|++++.+.+++|++++.|++++.+++++|+++|.||.++.+.+       +++||+
T Consensus       316 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~  395 (450)
T PRK14360        316 IGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGD  395 (450)
T ss_pred             ccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCC
Confidence            3344444444444444444444444444444444555555555555555566777777777665532       466777


Q ss_pred             CeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060          330 DVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       330 ~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++.||.++.+.       ++.+.+++.|.+++|+++++
T Consensus       396 ~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~  433 (450)
T PRK14360        396 RSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLA  433 (450)
T ss_pred             CeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEE
Confidence            77777666652       57778888888999998764

>PLN02472 uncharacterized protein

Probab=99.38  E-value=6e-12  Score=108.22  Aligned_cols=107  Identities=11%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             EecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-----------ccEEcCCCEECCCc
Q 018060          251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-----------SSIIGWHSTVGQWA  319 (361)
Q Consensus       251 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~i~~~~~ig~~~  319 (361)
                      +...++|.+++.+.+++.|++++.|+.+++|...  .....||+++.|+++|+|+           +++||+++.||++|
T Consensus        62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd--~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s  139 (246)
T PLN02472         62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGD--LNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYS  139 (246)
T ss_pred             cCCCCEECCCCEEecCEEECCCCEEcCCCEEecC--CcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCc
Confidence            4444555555555444444444444444443332  1125788888888888884           47889999999998


Q ss_pred             EEcCceEECCCeEECCceEEc-------CcEEccCceee--cccCCCccc
Q 018060          320 RVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  360 (361)
Q Consensus       320 ~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~--~~~~~~~~~  360 (361)
                      .|.+ |+||+++.||.++++.       ++.+.+++.+.  ..++.++++
T Consensus       140 ~L~~-~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~  188 (246)
T PLN02472        140 LLRS-CTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELW  188 (246)
T ss_pred             EECC-eEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence            8875 8888888887777663       45666666666  466666654

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.38  E-value=5.5e-12  Score=101.86  Aligned_cols=83  Identities=23%  Similarity=0.256  Sum_probs=60.3

Q ss_pred             EcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec-----cEEcCCCEECCCcEEcCceEE
Q 018060          257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTIL  327 (361)
Q Consensus       257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~i  327 (361)
                      +++++.|+++++|.++++||++|.|+++++|.    .++|++++.|+++|+|.+     ++|++++.|+.++.+.+ ++|
T Consensus         2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I   80 (153)
T cd04645           2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTI   80 (153)
T ss_pred             ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee-eEE
Confidence            34555555555555566666666666666665    358888999988888887     48899999988888876 778


Q ss_pred             CCCeEECCceEEc
Q 018060          328 GEDVHVCDEIYSN  340 (361)
Q Consensus       328 g~~~~v~~~~~i~  340 (361)
                      |+++.|++++.+.
T Consensus        81 g~~~~Ig~~~~v~   93 (153)
T cd04645          81 GDNCLIGMGAIIL   93 (153)
T ss_pred             CCCCEECCCCEEc
Confidence            8877777776664

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.37  E-value=8.3e-12  Score=102.19  Aligned_cols=84  Identities=15%  Similarity=0.204  Sum_probs=45.8

Q ss_pred             EEcCCCEECCCcEE----CCCcEECCCCEECCCcEEec-eEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCC
Q 018060          256 LVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGED  330 (361)
Q Consensus       256 ~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~  330 (361)
                      .|++++.|++++.|    +.++.||++|.|+.++.|.. +.|+++|.||.++.|.++.||+++.||.++.|.+ +.|+++
T Consensus        44 ~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-~~i~~~  122 (167)
T cd00710          44 IIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG-VEIPPG  122 (167)
T ss_pred             EECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeC-CEeCCC
Confidence            34444444444444    22344555555555555553 5666666666666666666666666666665543 555555


Q ss_pred             eEECCceEEc
Q 018060          331 VHVCDEIYSN  340 (361)
Q Consensus       331 ~~v~~~~~i~  340 (361)
                      .++++++.+.
T Consensus       123 ~~v~~~~~v~  132 (167)
T cd00710         123 RYVPAGAVIT  132 (167)
T ss_pred             CEECCCCEEc
Confidence            5555555543

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.37  E-value=3.6e-12  Score=105.19  Aligned_cols=63  Identities=35%  Similarity=0.496  Sum_probs=38.9

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS  305 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~  305 (361)
                      ..+++++.|++.+.|+++++||+.|+|++++.|+++++|++++.|. ++.||.++.|-+.+.|+
T Consensus         4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG   67 (260)
T COG1043           4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIG   67 (260)
T ss_pred             cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccC
Confidence            3466677777777777777777777777666666666666666665 45555444444444333

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.37  E-value=5.6e-12  Score=89.73  Aligned_cols=76  Identities=16%  Similarity=0.276  Sum_probs=64.2

Q ss_pred             EECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC-cEEccCcee
Q 018060          274 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEI  350 (361)
Q Consensus       274 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v  350 (361)
                      +||+++.|++++.|.+++|+++|.|++++.|.+++|++++.|++++.+.+ ++|++++.|++++.+.+ +.+.+++.+
T Consensus         1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~-svv~~~~~i~~~~~i~~~~~ig~~~~i   77 (79)
T cd03356           1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD-SIIGDNAVIGENVRVVNLCIIGDDVVV   77 (79)
T ss_pred             CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC-CEECCCCEECCCCEEcCCeEECCCeEE
Confidence            36778888888888888889999999999999999999999999999987 88999999999988876 666666554

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.36  E-value=6.4e-12  Score=120.05  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=25.1

Q ss_pred             eEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          325 TILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       325 ~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +.||+++++|.++.+       .++.+.|++.|.+++++++++
T Consensus       399 ~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~  441 (456)
T PRK14356        399 TVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLA  441 (456)
T ss_pred             CEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEE
Confidence            455555555555554       367788888899999988765

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=99.35  E-value=1.3e-10  Score=98.07  Aligned_cols=210  Identities=16%  Similarity=0.219  Sum_probs=120.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      .+||||||.|+||+.   ..||++++++|+||++|+|+.|.... +++|+|++++ ..+.+.++..   ...+-.+.++.
T Consensus         6 ~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~   79 (230)
T COG1211           6 SAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVK   79 (230)
T ss_pred             EEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCCeEEEec
Confidence            599999999999999   89999999999999999999998886 8999999998 4444555542   11122333332


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV  157 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v  157 (361)
                      .  ...-.++++.++..+...+++.|++.-+-= +.. ..++++++....  ..+.+.+.+..+    .+...+.+ +.+
T Consensus        80 G--G~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai~alpv~D----Tik~~~~~-~~i  150 (230)
T COG1211          80 G--GATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAILALPVTD----TLKRVDAD-GNI  150 (230)
T ss_pred             C--CccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEEEEeeccC----cEEEecCC-CCe
Confidence            2  223468899999888542343455544433 333 347888843332  335555555533    34444433 555


Q ss_pred             eeeeecCCCCCCCeEE-EEEEEeCHhhHhhccC----CCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHH
Q 018060          158 EKFVEKPKLFVGNKIN-AGIYLLNPAVLDRIEL----RPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~-~Giyi~~~~~l~~l~~----~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~  231 (361)
                      .+......     ++- =.=..|+.+.|...-.    ...++-.|. ..+.. ..++..+.=+-+-+-+.+|+|+.-+..
T Consensus       151 ~~t~~R~~-----l~~~QTPQ~F~~~~L~~a~~~a~~~~~~~tDda-s~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~  224 (230)
T COG1211         151 VETVDRSG-----LWAAQTPQAFRLELLKQALARAFAEGREITDDA-SAIEKAGGPVSLVEGSADNFKITTPEDLEIAEA  224 (230)
T ss_pred             eeccChhh-----hhhhhCCccccHHHHHHHHHHHHhcCCCcCCHH-HHHHHcCCCeEEEecCcceeEecCHHHHHHHHH
Confidence            55433211     000 0002344444432211    111121221 11111 224444433346778899999887765


Q ss_pred             H
Q 018060          232 L  232 (361)
Q Consensus       232 ~  232 (361)
                      .
T Consensus       225 i  225 (230)
T COG1211         225 I  225 (230)
T ss_pred             H
Confidence            3

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.34  E-value=1.2e-11  Score=118.70  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=48.9

Q ss_pred             eceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------ceEECCCeEECCceEE-------cCcEEccCceeecc
Q 018060          288 SRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSS  353 (361)
Q Consensus       288 ~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~  353 (361)
                      .+++|++++.|++.+.+.+++||++|.||.++.+.+       +++||++++||.++.+       .++.+++++.|.++
T Consensus       356 ~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~  435 (482)
T PRK14352        356 KNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIRED  435 (482)
T ss_pred             cccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCC
Confidence            344455555555555555667777777777766642       3677777777777665       36777888888888


Q ss_pred             cCCCccc
Q 018060          354 ILKPEIV  360 (361)
Q Consensus       354 ~~~~~~~  360 (361)
                      ++++++.
T Consensus       436 v~~~~~~  442 (482)
T PRK14352        436 VPPGALA  442 (482)
T ss_pred             CCCCcEE
Confidence            8887753

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.33  E-value=1.6e-11  Score=106.48  Aligned_cols=99  Identities=18%  Similarity=0.264  Sum_probs=69.4

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEeceEEccCcEECC---CCEEeccEEcCCCEECCCcE
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWAR  320 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~ig~~~~  320 (361)
                      .....+..++.|+++++||++++|+.  +.+||++|+||++|.|     +++++||.   ++.....+||+++.||.+|+
T Consensus       133 ~~~~~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~  207 (273)
T PRK11132        133 QNQISVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAK  207 (273)
T ss_pred             hhcceeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCE
Confidence            34455566777777777777777763  3466666666666555     56666663   22334579999999999999


Q ss_pred             EcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          321 VENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       321 i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                      |.+++.||++++||+++++.. -|-+++++
T Consensus       208 Ilggv~IG~~a~IGAgSvV~~-dVp~~~~v  236 (273)
T PRK11132        208 ILGNIEVGRGAKIGAGSVVLQ-PVPPHTTA  236 (273)
T ss_pred             EcCCCEECCCCEECCCCEECc-ccCCCcEE
Confidence            999999999999999999864 24444443

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.33  E-value=1.2e-11  Score=88.11  Aligned_cols=76  Identities=17%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             EECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEc-CcEEccCcee
Q 018060          274 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI  350 (361)
Q Consensus       274 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~~~v  350 (361)
                      +||++++|++++.|.++.|+++|.|+++++|.+++|++++.|++++.|.+ ++|++++.|++++.+. ++.+.+++.+
T Consensus         1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~v~~~~~i   77 (79)
T cd05787           1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIGKGCTIPPGSLISFGVVI   77 (79)
T ss_pred             CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEECCCCEECCCCEEeCCcEe
Confidence            36788888888888889999999999999999999999999999999986 9999999999998886 4566665544

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.33  E-value=1.5e-11  Score=117.56  Aligned_cols=104  Identities=14%  Similarity=0.265  Sum_probs=60.1

Q ss_pred             EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------ceEECC
Q 018060          257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGE  329 (361)
Q Consensus       257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~  329 (361)
                      |++++.|+++|.|.+++.||++|+|++++.|.++.|++++.+++.+.+++++||+++.||.++.+.+       .+.||+
T Consensus       319 ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd  398 (458)
T PRK14354        319 VGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGD  398 (458)
T ss_pred             ECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECC
Confidence            3334444444444444444444444444444455555555555555555556666666666554422       255666


Q ss_pred             CeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          330 DVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       330 ~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++.+|.++.+       .++.+++++.|.+++|+++++
T Consensus       399 ~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~  436 (458)
T PRK14354        399 NAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALA  436 (458)
T ss_pred             CcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEE
Confidence            6666666654       367788889999999998775

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.32  E-value=4.3e-11  Score=101.72  Aligned_cols=29  Identities=14%  Similarity=0.364  Sum_probs=12.7

Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCc
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDE  336 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~  336 (361)
                      .|++++.|++++.|..++.+|+++.++.+
T Consensus       116 ~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~  144 (205)
T cd03352         116 VIGDGTKIDNLVQIAHNVRIGENCLIAAQ  144 (205)
T ss_pred             EECCCCEECCceEEeCCCEECCCCEECCC
Confidence            34444444444444444444444444433

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.31  E-value=1.5e-11  Score=117.72  Aligned_cols=97  Identities=18%  Similarity=0.324  Sum_probs=74.2

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-ccEEcCCCEECCCcE
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWAR  320 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~  320 (361)
                      ...+.+++.|.+++.|++++.|+++|+| .+|+||++|.|++++.|.+++|++++.|++++.+. ++.|++++.|++++.
T Consensus       276 ~~~I~~~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~  354 (481)
T PRK14358        276 DVTIEPGVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVE  354 (481)
T ss_pred             CCEEeCCcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEE
Confidence            3456667777777778888888888888 57889999999999999999999999999999987 478888888888766


Q ss_pred             EcC----------------ceEECCCeEECCceEE
Q 018060          321 VEN----------------MTILGEDVHVCDEIYS  339 (361)
Q Consensus       321 i~~----------------~~~ig~~~~v~~~~~i  339 (361)
                      |.+                .++||+++.||+++.+
T Consensus       355 i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i  389 (481)
T PRK14358        355 TKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIV  389 (481)
T ss_pred             ECCceecCCcccCceEEECCeEEcCCceEcCCEEE
Confidence            532                2555556666555554

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.31  E-value=1.3e-11  Score=117.63  Aligned_cols=57  Identities=11%  Similarity=0.170  Sum_probs=36.3

Q ss_pred             EeccEEcCCCEECCCcEEc-------CceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          304 ISSSIIGWHSTVGQWARVE-------NMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       304 i~~~~i~~~~~ig~~~~i~-------~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +++++||+++.||+++.+.       .+++||+++.||.++.+       .++.+++++.|.+++++++++
T Consensus       356 ~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~  426 (448)
T PRK14357        356 LGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLA  426 (448)
T ss_pred             ccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEE
Confidence            3344556666666555432       13566666666666554       367778888888888888764

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.31  E-value=3.5e-11  Score=90.17  Aligned_cols=78  Identities=22%  Similarity=0.268  Sum_probs=70.8

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      .+.+++.+ .++.|++++.|+ ++.| .+|+++++|.|+++++|.+|+|++++.|++++++.+++|++++.|++++.+.+
T Consensus         3 ~i~~~~~i-~~s~Ig~~~~I~-~~~I-~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~   79 (104)
T cd04651           3 YIGRRGEV-KNSLVSEGCIIS-GGTV-ENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG   79 (104)
T ss_pred             eecCCCEE-EeEEECCCCEEc-CeEE-EeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence            45677777 468899999998 8989 59999999999999999999999999999999999999999999999999887


Q ss_pred             c
Q 018060          324 M  324 (361)
Q Consensus       324 ~  324 (361)
                      .
T Consensus        80 ~   80 (104)
T cd04651          80 D   80 (104)
T ss_pred             C
Confidence            4

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.30  E-value=1.2e-10  Score=97.38  Aligned_cols=97  Identities=18%  Similarity=0.202  Sum_probs=71.0

Q ss_pred             cceEEcCCCEECCCcEE----CCCcEECCCCEECCCcEEe---ceEEccCcEECCCCEEec-------------------
Q 018060          253 GNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS-------------------  306 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------------  306 (361)
                      .+..+|+++.++.+|++    .+...||++|.|++++.|.   ++.||++|.|++++.|.+                   
T Consensus        42 ~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~  121 (192)
T PRK09677         42 GSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP  121 (192)
T ss_pred             CeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh
Confidence            45556777777777766    3456777777777777775   567788888887777753                   


Q ss_pred             ---------cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          307 ---------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       307 ---------~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                               .+|++++.||.++.|.++++||+++.|++++++... +.+++.+
T Consensus       122 ~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~-i~~~~~~  173 (192)
T PRK09677        122 DMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS-IPENTVI  173 (192)
T ss_pred             hhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc-cCCCcEE
Confidence                     468899999999998888999999999999988752 4344333

>PLN02694 serine O-acetyltransferase

Probab=99.29  E-value=1.9e-11  Score=105.97  Aligned_cols=85  Identities=22%  Similarity=0.236  Sum_probs=59.2

Q ss_pred             ceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEec-eEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCC
Q 018060          254 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGED  330 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~  330 (361)
                      ++.|++++.||++++|..  +++||++|+||++|.|.+ +.++. +  +..+..++++||+++.||.+++|.++++||++
T Consensus       160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg-~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~  236 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG-T--GKACGDRHPKIGDGVLIGAGATILGNVKIGEG  236 (294)
T ss_pred             eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCC-c--ccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence            455666666666666643  566666666666666542 22222 1  33455667899999999999999888999999


Q ss_pred             eEECCceEEcC
Q 018060          331 VHVCDEIYSNG  341 (361)
Q Consensus       331 ~~v~~~~~i~~  341 (361)
                      ++|++++++..
T Consensus       237 a~IGAgSVV~k  247 (294)
T PLN02694        237 AKIGAGSVVLI  247 (294)
T ss_pred             CEECCCCEECC
Confidence            99999999864

>PRK10502 putative acyl transferase; Provisional

Probab=99.29  E-value=3e-11  Score=100.09  Aligned_cols=69  Identities=14%  Similarity=0.075  Sum_probs=47.0

Q ss_pred             cEECCCCEECCCcEEe---ceEEccCcEECCCCEEe----------------ccEEcCCCEECCCcEEcCceEECCCeEE
Q 018060          273 VAVGPGCVVESGVRLS---RCTVMRGVRIKKHACIS----------------SSIIGWHSTVGQWARVENMTILGEDVHV  333 (361)
Q Consensus       273 ~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~----------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v  333 (361)
                      ..||++|.|++++.|.   ++.|+++|.|++++.|.                +.+||+++.||.++.|.+++.||++++|
T Consensus        72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI  151 (182)
T PRK10502         72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV  151 (182)
T ss_pred             EEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence            3444444444444443   34566666666665552                3478999999999999888999999999


Q ss_pred             CCceEEcC
Q 018060          334 CDEIYSNG  341 (361)
Q Consensus       334 ~~~~~i~~  341 (361)
                      ++++++..
T Consensus       152 ga~svV~~  159 (182)
T PRK10502        152 GARSSVFK  159 (182)
T ss_pred             CCCCEEec
Confidence            98888754

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.28  E-value=9e-11  Score=101.64  Aligned_cols=95  Identities=18%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCE-ECCCcE---Ee-ceEEccCcEECCCCEEec---------cEEc
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV-VESGVR---LS-RCTVMRGVRIKKHACISS---------SIIG  310 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~~---------~~i~  310 (361)
                      ++.++.|.+.++|.+++.|+++++|.++++|+.++. +|+++.   |. .++|+++|.||.+|.|..         +.||
T Consensus       175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IG  254 (341)
T TIGR03536       175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVG  254 (341)
T ss_pred             ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEEC
Confidence            456777777777777777777777777777777776 666555   44 567777777777777742         3677


Q ss_pred             CCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          311 WHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       311 ~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++|.||.++.|  +..||++++|++|+++..
T Consensus       255 e~~lIGagA~I--GI~IGd~~iIGAGavVta  283 (341)
T TIGR03536       255 EGCLLGANAGI--GIPLGDRCTVEAGLYITA  283 (341)
T ss_pred             CCcEECCCCEE--eeEECCCCEECCCCEEeC
Confidence            78888888887  588888888888887743

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.28  E-value=3.6e-11  Score=89.30  Aligned_cols=79  Identities=15%  Similarity=0.246  Sum_probs=66.2

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEc
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE  322 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~  322 (361)
                      ..+.+++.+.++++|++++.|++++.|.++++||++|+|+.  .|.+|+|++++.++++++|.+++|++++.||+++...
T Consensus        18 ~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~   95 (101)
T cd05635          18 AVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNS   95 (101)
T ss_pred             CEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceec
Confidence            34566677777888888888888888888888888888876  5789999999999999999999999999999988776


Q ss_pred             C
Q 018060          323 N  323 (361)
Q Consensus       323 ~  323 (361)
                      +
T Consensus        96 ~   96 (101)
T cd05635          96 D   96 (101)
T ss_pred             c
Confidence            5

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=99.28  E-value=8e-11  Score=106.67  Aligned_cols=107  Identities=15%  Similarity=0.190  Sum_probs=77.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||||+|+||+.     +|+|+++.|+||++|+++.+... +.+++|+++...  .. ...    ..++.+... ..
T Consensus       162 ~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~~----~~~v~~I~D-~~  227 (346)
T PRK14500        162 YGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GTP----LENLPTLPD-RG  227 (346)
T ss_pred             eEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--hh-hcc----ccCCeEEeC-CC
Confidence            589999999999965     99999999999999999998765 789988886532  11 100    002333322 23


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHH
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFH  125 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~-~l~~~~~~~  125 (361)
                      ...|...+++.+.....  .+ .+++++||+ +... .+..+++.+
T Consensus       228 ~~~GPlagI~aaL~~~~--~~-~~lVl~cDmP~l~~~~l~~L~~~~  270 (346)
T PRK14500        228 ESVGPISGILTALQSYP--GV-NWLVVACDLAYLNSETVEKLLAHY  270 (346)
T ss_pred             CCCChHHHHHHHHHhCC--CC-CEEEEECCcCCCCHHHHHHHHHhh
Confidence            34699999999998763  22 789999999 4443 367777765

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=99.28  E-value=9.3e-11  Score=108.32  Aligned_cols=107  Identities=20%  Similarity=0.370  Sum_probs=76.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||+|+||+.     +|+|++++|+|||+|+++.+... +++++|+++....  . .+..    .++.++... 
T Consensus       175 i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~--~-~~~~----~~v~~i~d~-  240 (369)
T PRK14490        175 LSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQA--E-QYRS----FGIPLITDS-  240 (369)
T ss_pred             ceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCchh--h-HHhh----cCCcEEeCC-
Confidence            3589999999999965     99999999999999999999865 7888887766421  1 1121    245554332 


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHH
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEF  124 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~  124 (361)
                      ....|...++..+.....   .+.+++++||+ +.. ..++.+++.
T Consensus       241 ~~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~  283 (369)
T PRK14490        241 YLDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG  283 (369)
T ss_pred             CCCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence            234577888888776552   23799999999 334 346667664

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.28  E-value=4.5e-11  Score=97.05  Aligned_cols=95  Identities=22%  Similarity=0.340  Sum_probs=60.0

Q ss_pred             EEecceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEeceEEccCcEECCC---CEEeccEEcCCCEECCCcEEcCc
Q 018060          250 NIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKH---ACISSSIIGWHSTVGQWARVENM  324 (361)
Q Consensus       250 ~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~---~~i~~~~i~~~~~ig~~~~i~~~  324 (361)
                      .+..++.|++++.|+++++|+.  +++|+++|+||++|.|     +++|+|+..   .....++||+++.||.+++|.++
T Consensus        57 ~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I-----~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~  131 (162)
T TIGR01172        57 RVLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN  131 (162)
T ss_pred             heeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccccCCcCCEECCCcEEcCCCEEECC
Confidence            3444555555555555555542  2455555555555554     333333322   11345789999999999999998


Q ss_pred             eEECCCeEECCceEEcCcEEccCcee
Q 018060          325 TILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       325 ~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                      ++||+++.|++++++... +-+++++
T Consensus       132 v~IG~~~~Iga~s~V~~d-vp~~~~~  156 (162)
T TIGR01172       132 IEVGENAKIGANSVVLKD-VPPGATV  156 (162)
T ss_pred             cEECCCCEECCCCEECCC-CCCCCEE
Confidence            999999999999988752 4444444

Cysteine biosynthesis

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.25  E-value=6.3e-11  Score=102.77  Aligned_cols=77  Identities=19%  Similarity=0.202  Sum_probs=36.7

Q ss_pred             cCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEcc--------CcEECCCCEEec-cEEcCCCEECCCcEEcCceEE
Q 018060          258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR--------GVRIKKHACISS-SIIGWHSTVGQWARVENMTIL  327 (361)
Q Consensus       258 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~--------~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i  327 (361)
                      +.++.|++++.|+.++.||++|.||++|.|. ++.|+.        .+.|+++|.|+. ++|..++.||+++.|+++++|
T Consensus       130 ~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV  209 (272)
T PRK11830        130 NIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL  209 (272)
T ss_pred             CCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence            3344455555555445555555555555544 222221        244444444443 444455555555555555555


Q ss_pred             CCCeEEC
Q 018060          328 GEDVHVC  334 (361)
Q Consensus       328 g~~~~v~  334 (361)
                      +.++.|+
T Consensus       210 ~~gt~I~  216 (272)
T PRK11830        210 GQSTKIY  216 (272)
T ss_pred             cCCeEEC
Confidence            5555555

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.24  E-value=1e-10  Score=97.71  Aligned_cols=35  Identities=11%  Similarity=0.138  Sum_probs=31.0

Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .+||++++||.++.|.+++.||++++|++++++..
T Consensus       132 i~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k  166 (203)
T PRK09527        132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK  166 (203)
T ss_pred             eEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            57899999999999998899999999999998865

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.23  E-value=7.2e-11  Score=110.10  Aligned_cols=94  Identities=21%  Similarity=0.310  Sum_probs=78.1

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEEC---CCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEE
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  321 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i  321 (361)
                      +...++|++++.| .++.|+++|+|+   .+|+||++|+|+++|+|.+|+|+++|.|+++|+|.+|+|++++.|++++.+
T Consensus       279 ~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i  357 (380)
T PRK05293        279 NLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVII  357 (380)
T ss_pred             CCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEE
Confidence            3344555555555 345666666664   378999999999999999999999999999999999999999999999999


Q ss_pred             cCc----eEECCCeEECCceEE
Q 018060          322 ENM----TILGEDVHVCDEIYS  339 (361)
Q Consensus       322 ~~~----~~ig~~~~v~~~~~i  339 (361)
                      .++    .+||+++.|+++++|
T Consensus       358 ~~~~~~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        358 GGGKEVITVIGENEVIGVGTVI  379 (380)
T ss_pred             cCCCceeEEEeCCCCCCCCcEe
Confidence            885    778999888888776

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.22  E-value=1.7e-10  Score=86.24  Aligned_cols=82  Identities=20%  Similarity=0.370  Sum_probs=61.4

Q ss_pred             eEEcCCCEECCCcEECC--CcEECCCCEECCCcEEeceEEccCcEECCCCE---EeccEEcCCCEECCCcEEcCceEECC
Q 018060          255 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILGE  329 (361)
Q Consensus       255 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~ig~  329 (361)
                      +.|+++++|+++++|+.  +++|++++.||++|.|     ++++.|++++.   +++++|++++.|+.++.+.+++.||+
T Consensus         3 ~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~   77 (101)
T cd03354           3 IDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGD   77 (101)
T ss_pred             eEeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECC
Confidence            45666666666666654  4456666666666554     56677777765   67789999999999999998899999


Q ss_pred             CeEECCceEEcC
Q 018060          330 DVHVCDEIYSNG  341 (361)
Q Consensus       330 ~~~v~~~~~i~~  341 (361)
                      ++.+++++.+..
T Consensus        78 ~~~i~~~~~i~~   89 (101)
T cd03354          78 NVKIGANAVVTK   89 (101)
T ss_pred             CCEECCCCEECc
Confidence            999999998875

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.22  E-value=2.2e-10  Score=93.14  Aligned_cols=95  Identities=17%  Similarity=0.273  Sum_probs=64.2

Q ss_pred             cccccCCcEEecc---eEEcCCCEECCCcEECC------------CcEECCCCEECCCcEEeceEEccCcEECCCCEEec
Q 018060          242 SLKLATGANIVGN---VLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS  306 (361)
Q Consensus       242 ~~~~~~~~~i~~~---~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~  306 (361)
                      ...+++++.+.++   +.||+++.|+++|+|.+            ++.||+++.|++++.+.++.|++++.|++++.|. 
T Consensus        27 ~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig-  105 (161)
T cd03359          27 KTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIG-  105 (161)
T ss_pred             ceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEc-
Confidence            3445666666654   57888888888887764            3478888888888888777777777777766554 


Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                          +++.|++++.|..+++|..++++++.+++.+
T Consensus       106 ----~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g  136 (161)
T cd03359         106 ----RRCIIKDCVKILDGTVVPPDTVIPPYSVVSG  136 (161)
T ss_pred             ----CCCEECCCcEECCCCEECCCCEeCCCCEEec
Confidence                4555555555555566666666666666654

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.21  E-value=1.7e-10  Score=95.29  Aligned_cols=76  Identities=16%  Similarity=0.206  Sum_probs=52.2

Q ss_pred             ECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-------------------ccEEcCCCEECCCcEEcC
Q 018060          263 IGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       263 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~  323 (361)
                      +|.++.||++++|+.+|+|++.+.|   .||++|.|++++.|.                   +.+||++++||.++.|.+
T Consensus        70 ~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~  146 (183)
T PRK10092         70 YGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINP  146 (183)
T ss_pred             ecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECC
Confidence            4555555555555555655555443   456666666666653                   357888888888888888


Q ss_pred             ceEECCCeEECCceEEcC
Q 018060          324 MTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i~~  341 (361)
                      ++.||++++|++++++..
T Consensus       147 gv~IG~~~vIgagsvV~~  164 (183)
T PRK10092        147 GVTIGDNVVVASGAVVTK  164 (183)
T ss_pred             CCEECCCCEECCCCEEcc
Confidence            888888888888888764

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.19  E-value=1.5e-10  Score=82.39  Aligned_cols=50  Identities=20%  Similarity=0.149  Sum_probs=25.5

Q ss_pred             EEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          291 TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       291 ~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +|+++|.|+++++|.++++++++.|++++.+.+ +++++++.+++++.+.+
T Consensus        19 ~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~-sii~~~~~v~~~~~~~~   68 (80)
T cd05824          19 VIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS-SIVGWNSTVGRWTRLEN   68 (80)
T ss_pred             EECCCCEECCCcEEeeeEEcCCCEECCCCEEeC-CEEeCCCEECCCcEEec
Confidence            344445555555555555555555555555554 55555555555554443

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.19  E-value=1.3e-10  Score=110.24  Aligned_cols=95  Identities=17%  Similarity=0.117  Sum_probs=69.2

Q ss_pred             EEcCCCEECCCcEECCCcEECCCC----------EECCCcEEeceEEccCcEECCCCEEe--------ccEEcCCCEECC
Q 018060          256 LVHESAQIGEGCLIGPDVAVGPGC----------VVESGVRLSRCTVMRGVRIKKHACIS--------SSIIGWHSTVGQ  317 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~~~~ig~~~----------~i~~~~~i~~~~i~~~~~i~~~~~i~--------~~~i~~~~~ig~  317 (361)
                      .|++++.|+++++| ++|.||++|          +||..+.|.+|.|+++|.||.++.+.        +++||+++.||.
T Consensus       300 ~ig~~~~i~~~~~i-~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~  378 (430)
T PRK14359        300 DVGPLAHIRPKSEI-KNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGS  378 (430)
T ss_pred             EECCCCEECCCcEE-eccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcC
Confidence            34444444444444 244455444          55555667788899999999998886        368999999999


Q ss_pred             CcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060          318 WARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS  352 (361)
Q Consensus       318 ~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~  352 (361)
                      ++.|.+++.||++++|++++.+.+. +-+++.+..
T Consensus       379 ~~~i~~~~~ig~~~~i~~g~~v~~~-v~~~~~~~~  412 (430)
T PRK14359        379 DTQLVAPVNIEDNVLIAAGSTVTKD-VPKGSLAIS  412 (430)
T ss_pred             CCEEeCCcEECCCCEECCCCEEccc-cCCCcEEEe
Confidence            9999999999999999999998652 445555544

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.18  E-value=2.8e-10  Score=86.36  Aligned_cols=94  Identities=17%  Similarity=0.258  Sum_probs=68.5

Q ss_pred             ceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEece---EEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEEC
Q 018060          254 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRC---TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILG  328 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~---~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig  328 (361)
                      ++.|+++++|++++.|.+  ++.||++|.|+++|.|.++   .+..++.+.......+++|++++.|++++.+.+++.|+
T Consensus         1 ~v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig   80 (109)
T cd04647           1 NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIG   80 (109)
T ss_pred             CeEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEEC
Confidence            356777777777777766  7888888888888888743   34444444445556678888899998888888778889


Q ss_pred             CCeEECCceEEcCcEEccCc
Q 018060          329 EDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       329 ~~~~v~~~~~i~~~~i~~~~  348 (361)
                      +++.+++++.+.. .+.++.
T Consensus        81 ~~~~i~~~~~v~~-~i~~~~   99 (109)
T cd04647          81 DGAVVGAGSVVTK-DVPPNS   99 (109)
T ss_pred             CCCEECCCCEEee-ECCCCC
Confidence            9988888888873 333333

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.17  E-value=2.9e-10  Score=97.99  Aligned_cols=94  Identities=19%  Similarity=0.247  Sum_probs=71.1

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCc-EECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcC
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDV-AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGW  311 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~  311 (361)
                      ..+.++..+.-+++|++++.|.++++|..++ +||.. .|  +++|. +|+|++++.|+.++.|.+         ..||+
T Consensus       154 VRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe  230 (319)
T TIGR03535       154 VRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGE  230 (319)
T ss_pred             cEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECC
Confidence            3455666666777777777777777777677 57775 45  45666 577888888888888544         58999


Q ss_pred             CCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          312 HSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       312 ~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +|.||.+|.|  +..||++|+||+|+++..
T Consensus       231 ~~~IGagA~I--GI~IGd~~VVGAGaVVtk  258 (319)
T TIGR03535       231 RCLLGANSGL--GISLGDDCVVEAGLYVTA  258 (319)
T ss_pred             CcEECCCCEE--CeEECCCCEECCCCEEeC
Confidence            9999999999  599999999999998853

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.16  E-value=2.7e-10  Score=98.71  Aligned_cols=17  Identities=29%  Similarity=0.448  Sum_probs=10.3

Q ss_pred             CCcEECCCCEECCCcEE
Q 018060          271 PDVAVGPGCVVESGVRL  287 (361)
Q Consensus       271 ~~~~ig~~~~i~~~~~i  287 (361)
                      .+++||++|.||++|.|
T Consensus       223 sGavIGhds~IG~gasI  239 (341)
T TIGR03536       223 AGVMVGKGSDLGGGCST  239 (341)
T ss_pred             cCCEECCCCEECCCCEE
Confidence            44556666666666666

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.16  E-value=4.2e-10  Score=92.28  Aligned_cols=46  Identities=9%  Similarity=0.021  Sum_probs=35.5

Q ss_pred             ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060          306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS  352 (361)
Q Consensus       306 ~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~  352 (361)
                      +.+||++|+||.++.|.+++.||++++||+++++.+. +.+++.+.+
T Consensus       118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~-vp~~~vv~G  163 (169)
T cd03357         118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD-IPANVVAAG  163 (169)
T ss_pred             CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc-cCCCcEEEc
Confidence            4688889999999998888999999999999988763 444444433

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.16  E-value=2.2e-10  Score=81.13  Aligned_cols=76  Identities=17%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060          256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  335 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~  335 (361)
                      .|++++.|+++++|++++.||++|.|++++.|.+.....        ...+..|++++.++.++.+.+++.||+++++++
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~   73 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA   73 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence            466666666666666667777777777777666443221        223356677777777777766677777777777


Q ss_pred             ceEE
Q 018060          336 EIYS  339 (361)
Q Consensus       336 ~~~i  339 (361)
                      ++.+
T Consensus        74 ~s~v   77 (78)
T cd00208          74 GAVV   77 (78)
T ss_pred             CcEe
Confidence            6654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=99.16  E-value=2e-11  Score=106.96  Aligned_cols=157  Identities=19%  Similarity=0.245  Sum_probs=93.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc--------CCCEEEEEcccChHHHHHHHHHhhhc
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------GVTEVVLAINYQPEVMLNFLKEFEAK   70 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~--------gi~~i~vv~~~~~~~~~~~l~~~~~~   70 (361)
                      -+|+||||.|+||+.   ..||+|+|++   |+|+|++.++++.+.        ++..+++.+....+.+++++++....
T Consensus         2 a~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~   78 (266)
T cd04180           2 AVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK   78 (266)
T ss_pred             EEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence            479999999999974   8999999999   999999999999862        35555555555678899999985412


Q ss_pred             cCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEE------EEEccCCCC
Q 018060           71 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIM------VTKVDEPSK  144 (361)
Q Consensus        71 ~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~------~~~~~~~~~  144 (361)
                      .+..+.+.....+..+.+......+.   ...+....-+||++.......+++.|.+++.....+      .....+|..
T Consensus        79 ~~~v~~f~Q~~~P~~~~~~~~~~~~~---~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~  155 (266)
T cd04180          79 NSYVITFMQGKLPLKNDDDARDPHNK---TKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLF  155 (266)
T ss_pred             CCceEEEEeCCceEEeCCCCcccCCC---CceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHH
Confidence            22222233333343443333211111   111134555666666555566667666666542221      122234555


Q ss_pred             ceeEEEcCCCCeEeeeeecCC
Q 018060          145 YGVVVMEESTGKVEKFVEKPK  165 (361)
Q Consensus       145 ~~~v~~~~~~~~v~~~~ek~~  165 (361)
                      +|++..++. .....+.+|+.
T Consensus       156 lG~~~~~~~-~~~~kvv~K~~  175 (266)
T cd04180         156 IGIAIQNRK-AINQKVVPKTR  175 (266)
T ss_pred             HHHHHHcCC-CEEEEEEECCC
Confidence            555554443 56666666643

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>PRK10191 putative acyl transferase; Provisional

Probab=99.15  E-value=3.6e-10  Score=89.29  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=27.7

Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +.||+++.||.++.+.+++.||+++.+++++.+.+
T Consensus        93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~  127 (146)
T PRK10191         93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVVLD  127 (146)
T ss_pred             CEECCCcEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence            47788888888888877788888888888887765

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.15  E-value=4.7e-10  Score=87.06  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=26.5

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEEC----CCcEECCCCEECCCcEEe
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIG----PDVAVGPGCVVESGVRLS  288 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~  288 (361)
                      .+.+++.+.+.+++..++.|+++|.|.    .+++||++|.|+++|.|.
T Consensus        15 ~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~   63 (147)
T cd04649          15 YLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM   63 (147)
T ss_pred             EECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE
Confidence            345555555555555566666666555    556666666666666665

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.14  E-value=2.2e-10  Score=92.41  Aligned_cols=84  Identities=20%  Similarity=0.304  Sum_probs=57.0

Q ss_pred             cceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEeceEEccCcEECCCCE---EeccEEcCCCEECCCcEEcCceEE
Q 018060          253 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTIL  327 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~i  327 (361)
                      .++.|+|+|+||++.+|.  .+.+||+.++||++|.|     .+++++|....   -+.-+||+++.||++++|.+...|
T Consensus        66 ~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~I  140 (194)
T COG1045          66 FGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEI  140 (194)
T ss_pred             cceeeCCCCeECCceEEcCCceEEEcceeEECCCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEE
Confidence            344555555555555554  23456666666665554     56666654322   223589999999999999888999


Q ss_pred             CCCeEECCceEEcC
Q 018060          328 GEDVHVCDEIYSNG  341 (361)
Q Consensus       328 g~~~~v~~~~~i~~  341 (361)
                      |+|++||+++++..
T Consensus       141 Gd~akIGA~sVVlk  154 (194)
T COG1045         141 GDNAKIGAGSVVLK  154 (194)
T ss_pred             CCCCEECCCceEcc
Confidence            99999999999853

>PLN02357 serine acetyltransferase

Probab=99.14  E-value=3.4e-10  Score=101.04  Aligned_cols=37  Identities=14%  Similarity=0.062  Sum_probs=27.5

Q ss_pred             eccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          305 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       305 ~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++++||+++.||.++.|.++++||++++||+++++..
T Consensus       277 ~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~  313 (360)
T PLN02357        277 RHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK  313 (360)
T ss_pred             cCceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence            4567777778888777776777888888887777753

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.11  E-value=2.5e-10  Score=102.28  Aligned_cols=105  Identities=18%  Similarity=0.312  Sum_probs=65.1

Q ss_pred             EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------ceEECC
Q 018060          257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGE  329 (361)
Q Consensus       257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~  329 (361)
                      |+.++.|||.++++|++.|+++++||.+|+++++.|++++.+++-++|+++.||.++.||.++..-+       .++||+
T Consensus       323 vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd  402 (460)
T COG1207         323 VGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGD  402 (460)
T ss_pred             ecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecC
Confidence            3334444444444444444444444444444444444444444444555555555555555554432       589999


Q ss_pred             CeEECCceEE-------cCcEEccCceeecccCCCcccC
Q 018060          330 DVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIVM  361 (361)
Q Consensus       330 ~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~~  361 (361)
                      +++||.++.+       +++.+.++++|.+++|++++.+
T Consensus       403 ~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai  441 (460)
T COG1207         403 NVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAI  441 (460)
T ss_pred             CcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeE
Confidence            9999999886       4889999999999999998753

>PRK10191 putative acyl transferase; Provisional

Probab=99.11  E-value=9.3e-10  Score=86.99  Aligned_cols=82  Identities=20%  Similarity=0.249  Sum_probs=47.1

Q ss_pred             cccccCCcEEecceEEcC--CCEECCCcEECCCcEECCCCEECCCcEEe--ceEEccCcEECCCCEEec-cEEcCCCEEC
Q 018060          242 SLKLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVRLS--RCTVMRGVRIKKHACISS-SIIGWHSTVG  316 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i~--~~~i~~~~~i~~~~~i~~-~~i~~~~~ig  316 (361)
                      ...+++.+.+.+++.|++  ++.|++++.||+++.|+++|+||+.....  .+.|+++|.||.++.+.+ ..||+++.||
T Consensus        41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Ig  120 (146)
T PRK10191         41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVG  120 (146)
T ss_pred             CcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEEC
Confidence            334556666666666666  35555555555555555555555543321  246667777766666664 5566666666


Q ss_pred             CCcEEcC
Q 018060          317 QWARVEN  323 (361)
Q Consensus       317 ~~~~i~~  323 (361)
                      +++.+..
T Consensus       121 ags~V~~  127 (146)
T PRK10191        121 AGSVVLD  127 (146)
T ss_pred             CCCEECC
Confidence            6555554

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.11  E-value=4.2e-10  Score=95.03  Aligned_cols=99  Identities=17%  Similarity=0.286  Sum_probs=71.0

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec-eEEccCcEECCCCEEec---------cEEcCC
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISS---------SIIGWH  312 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------~~i~~~  312 (361)
                      ..+.+++.+...++|++++++.++++|.=++.+++++-|.-++.++. +.||+||.||-++.|.+         .+|+++
T Consensus       109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn  188 (271)
T COG2171         109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN  188 (271)
T ss_pred             eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence            44566666777777777777666665555566666666666555553 45666666666666652         379999


Q ss_pred             CEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          313 STVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      |.||.++++..|+.+|++|+|++|+.|..
T Consensus       189 cliGAns~~veGV~vGdg~VV~aGv~I~~  217 (271)
T COG2171         189 CLIGANSEVVEGVIVGDGCVVAAGVFITQ  217 (271)
T ss_pred             cEeccccceEeeeEeCCCcEEecceEEeC
Confidence            99999998888899999999999999853

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.10  E-value=7.1e-10  Score=104.98  Aligned_cols=78  Identities=18%  Similarity=0.359  Sum_probs=67.0

Q ss_pred             CCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcC----------------C---CEECCCc
Q 018060          259 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW----------------H---STVGQWA  319 (361)
Q Consensus       259 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~----------------~---~~ig~~~  319 (361)
                      +++.+ .++.|. +|+|+++|+|+ +|.|.+|+|+++|.|+++|+|.+|+++.                +   +.||++|
T Consensus       304 ~~~~~-~~~~i~-~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~  380 (436)
T PLN02241        304 PPSKI-EDCRIT-DSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT  380 (436)
T ss_pred             CCcEe-cCCeEE-EeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence            55666 567775 49999999999 9999999999999999999999998855                2   3899999


Q ss_pred             EEcCceEECCCeEECCceEEc
Q 018060          320 RVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       320 ~i~~~~~ig~~~~v~~~~~i~  340 (361)
                      .+.+ ++|++++.||+++.+.
T Consensus       381 ~i~~-~vI~~~v~Ig~~~~i~  400 (436)
T PLN02241        381 KIRN-AIIDKNARIGKNVVII  400 (436)
T ss_pred             EEcc-eEecCCCEECCCcEEe
Confidence            9986 9999999999998885

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.10  E-value=3.7e-10  Score=106.58  Aligned_cols=86  Identities=9%  Similarity=0.232  Sum_probs=74.6

Q ss_pred             ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcC-------------------C
Q 018060          252 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW-------------------H  312 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~-------------------~  312 (361)
                      ...+.+.+.+.+ .++.+ .+++||++|.| +++.|.+|+|+++|.||++|+|.+|+|++                   +
T Consensus       290 ~~~~~~~~~a~~-~~~~~-~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~  366 (429)
T PRK02862        290 YTRARYLPPSKL-LDATI-TESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPP  366 (429)
T ss_pred             eccCCCCCCccc-cccEE-EeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcc
Confidence            334556666666 36777 47999999999 88999999999999999999999999976                   6


Q ss_pred             CEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          313 STVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +.||++|.|.. ++|++++.||+++.+.+
T Consensus       367 ~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~  394 (429)
T PRK02862        367 LGIGEGTTIKR-AIIDKNARIGNNVRIVN  394 (429)
T ss_pred             cEECCCCEEEE-EEECCCcEECCCcEEec
Confidence            99999999987 99999999999999954

>PLN02739 serine acetyltransferase

Probab=99.09  E-value=5.6e-10  Score=98.77  Aligned_cols=36  Identities=14%  Similarity=0.088  Sum_probs=27.9

Q ss_pred             ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       306 ~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ..+||+++.||.+++|.+++.||++++||+|+++..
T Consensus       257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~k  292 (355)
T PLN02739        257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLK  292 (355)
T ss_pred             CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence            357778888888888877788888888888887753

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.08  E-value=9.8e-10  Score=95.43  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=58.0

Q ss_pred             cccCCcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCCEEeccEEcCC
Q 018060          244 KLATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISSSIIGWH  312 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~~~i~~~  312 (361)
                      ....++.|++.+.||+++.|+.  +++|++++.||++|.|..++.|++         ..|+++|.||.||.|.     .+
T Consensus       137 ~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Il-----gg  211 (273)
T PRK11132        137 SVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKIL-----GN  211 (273)
T ss_pred             eeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEc-----CC
Confidence            3456666667777777777764  567777777888888888777763         4555566665555554     45


Q ss_pred             CEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          313 STVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +.||++++|+.+++|-++  |.+++++.|
T Consensus       212 v~IG~~a~IGAgSvV~~d--Vp~~~~v~G  238 (273)
T PRK11132        212 IEVGRGAKIGAGSVVLQP--VPPHTTAAG  238 (273)
T ss_pred             CEECCCCEECCCCEECcc--cCCCcEEEe
Confidence            555555555555555554  666666654

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.08  E-value=1.2e-09  Score=88.78  Aligned_cols=79  Identities=25%  Similarity=0.323  Sum_probs=49.1

Q ss_pred             ccCCcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCCEEec-cEEcCC
Q 018060          245 LATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWH  312 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~  312 (361)
                      +..+..|.+.+.|++++.|+.  +++|++++.||++|.|++++.|+.         ++|+++|.|+.++.|.+ ++||++
T Consensus        58 ~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~  137 (162)
T TIGR01172        58 VLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGEN  137 (162)
T ss_pred             eeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCC
Confidence            344566666666666666654  356666677777777777776653         46677777777766665 455555


Q ss_pred             CEECCCcEEcC
Q 018060          313 STVGQWARVEN  323 (361)
Q Consensus       313 ~~ig~~~~i~~  323 (361)
                      +.||+++.+..
T Consensus       138 ~~Iga~s~V~~  148 (162)
T TIGR01172       138 AKIGANSVVLK  148 (162)
T ss_pred             CEECCCCEECC
Confidence            55555555554

Cysteine biosynthesis

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.06  E-value=1.2e-09  Score=90.38  Aligned_cols=51  Identities=16%  Similarity=0.262  Sum_probs=25.1

Q ss_pred             EEccCcEECCCCEEecc--------EEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          291 TVMRGVRIKKHACISSS--------IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       291 ~i~~~~~i~~~~~i~~~--------~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .||++++|.+++.|+..        .||+++.+-.++.|.-.|+||++|+...++.+.|
T Consensus        83 ~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAG  141 (260)
T COG1043          83 IIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAG  141 (260)
T ss_pred             EECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEec
Confidence            45555555555555532        3444444444444444455555555555555444

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.05  E-value=2.6e-09  Score=87.56  Aligned_cols=18  Identities=11%  Similarity=0.089  Sum_probs=9.0

Q ss_pred             EEccCceeecccCCCccc
Q 018060          343 VVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       343 ~i~~~~~v~~~~~~~~~~  360 (361)
                      .|+++++|.+++|+++++
T Consensus       144 ~VgagavV~~~vp~~~vv  161 (169)
T cd03357         144 VIGAGSVVTKDIPANVVA  161 (169)
T ss_pred             EECCCCEEccccCCCcEE
Confidence            334444455556665553

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02694 serine O-acetyltransferase

Probab=99.05  E-value=1.6e-09  Score=94.01  Aligned_cols=84  Identities=23%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             EEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEe---------ceEEccCcEECCCCEEe-ccEEcCCCEECC
Q 018060          250 NIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACIS-SSIIGWHSTVGQ  317 (361)
Q Consensus       250 ~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~  317 (361)
                      .|++.+.||++++|..  +++||+++.||++|.|..++.++         ++.|+++|.||.++.|. +++||+++.||.
T Consensus       162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA  241 (294)
T PLN02694        162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA  241 (294)
T ss_pred             EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence            3444444444444443  45555555555555555555553         46777777777777773 456666666666


Q ss_pred             CcEEcCceEECCCeEECCceEEcC
Q 018060          318 WARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       318 ~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++.|..      +  |.+++++.|
T Consensus       242 gSVV~k------d--VP~~~~v~G  257 (294)
T PLN02694        242 GSVVLI------D--VPPRTTAVG  257 (294)
T ss_pred             CCEECC------c--CCCCcEEEc
Confidence            555554      2  555555544

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.04  E-value=4.4e-09  Score=88.00  Aligned_cols=15  Identities=27%  Similarity=0.273  Sum_probs=6.9

Q ss_pred             EEccCcEECCCCEEe
Q 018060          291 TVMRGVRIKKHACIS  305 (361)
Q Consensus       291 ~i~~~~~i~~~~~i~  305 (361)
                      .||++|.|+++|.|.
T Consensus        97 ~IGd~v~Ig~~v~I~  111 (203)
T PRK09527         97 TIGDNVLIAPNVTLS  111 (203)
T ss_pred             EECCCCEECCCCEEE
Confidence            344444444444443

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.04  E-value=5.8e-09  Score=86.13  Aligned_cols=88  Identities=19%  Similarity=0.321  Sum_probs=58.2

Q ss_pred             ecceEEcCCCEECCCcEECCCc--EECCCCEECCCcEEec-------------eEEccCcEECCCCEEec-cEEcCCCEE
Q 018060          252 VGNVLVHESAQIGEGCLIGPDV--AVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS-SIIGWHSTV  315 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i~~~~--~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~-~~i~~~~~i  315 (361)
                      ..++.||++++|+.+|+|.+.+  .||++|.|+++|.|..             ..+...+.||++|.|+. ++|..++.|
T Consensus        71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I  150 (183)
T PRK10092         71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI  150 (183)
T ss_pred             cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEE
Confidence            4566666666666666665444  6788888888777741             22345567777777753 667777777


Q ss_pred             CCCcEEcCceEECCCeEECCceEEcC
Q 018060          316 GQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       316 g~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      |+++.|+.+++|.++  +.+++++.|
T Consensus       151 G~~~vIgagsvV~~d--i~~~~i~~G  174 (183)
T PRK10092        151 GDNVVVASGAVVTKD--VPDNVVVGG  174 (183)
T ss_pred             CCCCEECCCCEEccc--cCCCcEEEe
Confidence            777777777777765  467777654

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.03  E-value=1.8e-09  Score=99.74  Aligned_cols=90  Identities=28%  Similarity=0.436  Sum_probs=52.8

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcE-----ECCCcEECCCCEECCCcEEeceEEccCcEECCC-CEEeccEEcCCCEEC
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCL-----IGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKH-ACISSSIIGWHSTVG  316 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~-----i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~-~~i~~~~i~~~~~ig  316 (361)
                      ..+.+++.+ ++++|.+++.|+++|.     |+++|+||++|+|+ +|.|.+|+|++++.|+.+ +++.++++++++.|+
T Consensus       255 ~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~  332 (353)
T TIGR01208       255 VVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIK  332 (353)
T ss_pred             EEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEEC
Confidence            344455544 3334434444444444     33444444444444 344557777777777776 377777888888888


Q ss_pred             CCcEEcC--ceEECCCeEEC
Q 018060          317 QWARVEN--MTILGEDVHVC  334 (361)
Q Consensus       317 ~~~~i~~--~~~ig~~~~v~  334 (361)
                      +++++..  +.++|++++|+
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~  352 (353)
T TIGR01208       333 GNRRRPGDLRLTIGDYSQVE  352 (353)
T ss_pred             CCcccccccceEEcCCceec
Confidence            8777763  35677766654

Alternate name: dTDP-D-glucose synthase

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.02  E-value=1.7e-08  Score=82.44  Aligned_cols=203  Identities=18%  Similarity=0.209  Sum_probs=131.2

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEec-C
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ-E   80 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~-~   80 (361)
                      |+|+|.|.++|..      .|-+.+++|+|||.|+++....++ +++|+|.+..  +++.+.-.++    |.++.+.. .
T Consensus         6 AiIpAR~gSKgI~------~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs--~~Il~~A~~y----gak~~~~Rp~   73 (228)
T COG1083           6 AIIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS--EEILEEAKKY----GAKVFLKRPK   73 (228)
T ss_pred             EEEeccCCCCcCC------ccchHHhCCcchHHHHHHHHhcCCccceEEEcCCc--HHHHHHHHHh----CccccccCCh
Confidence            8999999988874      499999999999999999999998 6777765554  4555554444    44442221 1


Q ss_pred             C---CCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCC
Q 018060           81 T---EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG  155 (361)
Q Consensus        81 ~---~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~  155 (361)
                      .   +...+-++++.+.+..... ++.++.+++-.  +...++++.++.+.+++.+..+.+++.+.+.-.. .. .++ |
T Consensus        74 ~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~-f~-~~~-~  149 (228)
T COG1083          74 ELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKA-FS-LNN-G  149 (228)
T ss_pred             hhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHH-HH-hcC-C
Confidence            1   1223335566666666433 33577777766  5566799999999998888788777765442111 11 122 5


Q ss_pred             eEeeeeecCC--CCC-----CCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec-ceEEEcCCHHHHH
Q 018060          156 KVEKFVEKPK--LFV-----GNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYI  227 (361)
Q Consensus       156 ~v~~~~ek~~--~~~-----~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~-~~~~~i~t~~dy~  227 (361)
                      .+..+.|.|.  ..+     ....+..+|+++.+.|..-   ...|          ..+...|.++ ....||++..|+.
T Consensus       150 ~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~---~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~  216 (228)
T COG1083         150 EVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEN---DCFF----------IPNTILYEMPEDESIDIDTELDLE  216 (228)
T ss_pred             ceeecccCCccccccccchhhhhhcCcEEEehHHHHhhc---Ccee----------cCCceEEEcCcccccccccHHhHH
Confidence            6666655542  111     2235778999999887541   1111          2344455554 3678999999998


Q ss_pred             HHHHHHH
Q 018060          228 TGLRLYL  234 (361)
Q Consensus       228 ~a~~~~l  234 (361)
                      .+...+.
T Consensus       217 iae~l~~  223 (228)
T COG1083         217 IAENLIF  223 (228)
T ss_pred             HHHHHhh
Confidence            8876544

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.02  E-value=5e-09  Score=79.01  Aligned_cols=94  Identities=20%  Similarity=0.192  Sum_probs=61.5

Q ss_pred             ceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEeceEEccCcEECCCCE-EeccEEcCCCEECCCcEEcCceEECCC
Q 018060          254 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC-ISSSIIGWHSTVGQWARVENMTILGED  330 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~-i~~~~i~~~~~ig~~~~i~~~~~ig~~  330 (361)
                      +..||+++.|+++++|.  +...||++|.|++++.|...  .+......... .++..|+++|+||.++.|.+++.||++
T Consensus         3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~   80 (107)
T cd05825           3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG   80 (107)
T ss_pred             eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence            45667777777777764  35677777777777766421  01111111222 234688999999999999988999999


Q ss_pred             eEECCceEEcCcEEccCcee
Q 018060          331 VHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       331 ~~v~~~~~i~~~~i~~~~~v  350 (361)
                      +.|++++.+... +.+.+.+
T Consensus        81 ~~i~~gs~v~~~-~~~~~~~   99 (107)
T cd05825          81 AVVGARSVVVRD-LPAWTVY   99 (107)
T ss_pred             CEECCCCEEeCc-CCCCCEE
Confidence            999999988653 3444444

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PRK10502 putative acyl transferase; Provisional

Probab=99.02  E-value=2.2e-09  Score=88.98  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=58.9

Q ss_pred             cccCCcEEec--ceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEec-e---------EEccCcEECCCCEEec-cE
Q 018060          244 KLATGANIVG--NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSR-C---------TVMRGVRIKKHACISS-SI  308 (361)
Q Consensus       244 ~~~~~~~i~~--~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~-~---------~i~~~~~i~~~~~i~~-~~  308 (361)
                      .+.+++.+..  +..|++++.|++++.|.  ..+.||++|.|++++.|.. +         .+...+.||++|.|+. ++
T Consensus        59 ~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~  138 (182)
T PRK10502         59 VIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVF  138 (182)
T ss_pred             EEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCE
Confidence            3444444433  35567777777777775  3567788888888877741 1         1123345555555543 45


Q ss_pred             EcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060          309 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS  352 (361)
Q Consensus       309 i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~  352 (361)
                      |..++.||+++.|+.++++-++  +.+++++.|   .|.+.+..
T Consensus       139 I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G---~Pa~~ik~  177 (182)
T PRK10502        139 VAPGVTIGSGAVVGARSSVFKS--LPANTICRG---NPAVPIRP  177 (182)
T ss_pred             EcCCCEECCCCEECCCCEEecc--cCCCcEEEC---CcceEecc
Confidence            5555555555555555555443  566666665   55555544

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.01  E-value=1.7e-09  Score=100.13  Aligned_cols=78  Identities=23%  Similarity=0.371  Sum_probs=61.3

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECC----CcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcE
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWAR  320 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~  320 (361)
                      +++++++++.+.+ +++.|+++|+|++    +|+||++|+|+++|+|.+|+|++++.|+++++|.+|+||+++.|+.++.
T Consensus       280 ~~~~~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~  358 (361)
T TIGR02091       280 LPPAKFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVV  358 (361)
T ss_pred             CCCceEecCCCEE-ECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCE
Confidence            3445555554433 3345555555554    8999999999999999999999999999999999999999999988887


Q ss_pred             EcC
Q 018060          321 VEN  323 (361)
Q Consensus       321 i~~  323 (361)
                      |++
T Consensus       359 i~~  361 (361)
T TIGR02091       359 IGN  361 (361)
T ss_pred             eCC
Confidence            763

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PLN02357 serine acetyltransferase

Probab=99.01  E-value=2.5e-09  Score=95.48  Aligned_cols=90  Identities=20%  Similarity=0.256  Sum_probs=54.8

Q ss_pred             cEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEe---------ceEEccCcEECCCCEEe-ccEEcCCCEEC
Q 018060          249 ANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACIS-SSIIGWHSTVG  316 (361)
Q Consensus       249 ~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ig  316 (361)
                      ..|++++.||+++.|..  +++|+++++||++|.|..++.|+         +++|+++|.||.++.|. +.+||+++.||
T Consensus       227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG  306 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG  306 (360)
T ss_pred             eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence            44455555555555543  44555555555555555555554         36888888888887774 46788888888


Q ss_pred             CCcEEcCceEECCCeEECCceEE
Q 018060          317 QWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       317 ~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      .+++|.. -+-...+++|.-+.+
T Consensus       307 AgSVV~~-dVP~~~~v~G~PArv  328 (360)
T PLN02357        307 AGSVVLK-DVPPRTTAVGNPARL  328 (360)
T ss_pred             CCCEECc-ccCCCcEEECCCeEE
Confidence            8877776 444444444444433

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.00  E-value=1.7e-09  Score=102.00  Aligned_cols=73  Identities=12%  Similarity=0.118  Sum_probs=65.7

Q ss_pred             ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceE
Q 018060          252 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTI  326 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~  326 (361)
                      ..+++|++++.| ++|.|. +|+||++|+|+++|+|.+|+|+++|.|+++|+|.+|+|++++.|++++.|++++.
T Consensus       325 ~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~~  397 (425)
T PRK00725        325 AINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPE  397 (425)
T ss_pred             EEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCCC
Confidence            347889999999 789995 8999999999999999999999999999999999999999999998877776443

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1.6e-09  Score=97.08  Aligned_cols=69  Identities=19%  Similarity=0.257  Sum_probs=59.2

Q ss_pred             cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCc
Q 018060          253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM  324 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~  324 (361)
                      .+..|+.+|.|..  .+ .+|+|+.+++|+++|.|.+|+|+++|.||+||+|++++|..+|.|++|++|++.
T Consensus       295 ~nSLv~~GciI~G--~V-~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         295 SNSLVAGGCIISG--TV-ENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             eeeeeeCCeEEEe--EE-EeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence            3444555555544  44 489999999999999999999999999999999999999999999999999885

>PLN02739 serine acetyltransferase

Probab=98.99  E-value=3e-09  Score=94.26  Aligned_cols=87  Identities=20%  Similarity=0.262  Sum_probs=45.6

Q ss_pred             CcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEe---------ceEEccCcEECCCCEEeccEEcCCCEEC
Q 018060          248 GANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACISSSIIGWHSTVG  316 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~~~~i~~~~~ig  316 (361)
                      +..|++.+.||+++.|+.  +++|++++.||++|.|..++.|+         +..||++|.||.|+.|-     .++.||
T Consensus       205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~Il-----G~V~IG  279 (355)
T PLN02739        205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTIL-----GNISIG  279 (355)
T ss_pred             CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEe-----CCeEEC
Confidence            444444555555555532  55555555555555555555554         24556666666655554     344444


Q ss_pred             CCcEEcCceEECCCeEECCceEEcC
Q 018060          317 QWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       317 ~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +++.|+.|++|-++  |.+++++.|
T Consensus       280 d~aiIGAGSVV~kD--VP~~stvvG  302 (355)
T PLN02739        280 AGAMVAAGSLVLKD--VPSHSMVAG  302 (355)
T ss_pred             CCCEECCCCEECCC--CCCCcEEEe
Confidence            44444444444443  555555544

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.98  E-value=1.4e-08  Score=91.39  Aligned_cols=160  Identities=23%  Similarity=0.308  Sum_probs=105.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHcC-----------CCEEEEEcc-cChHHHHHHHH
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAVG-----------VTEVVLAIN-YQPEVMLNFLK   65 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~g-----------i~~i~vv~~-~~~~~~~~~l~   65 (361)
                      |.+|+||||.|+||+.   ..||+|+|++   |+|++++.++++.+.+           .-+++++++ ...+.++++++
T Consensus        16 va~viLaGG~GTRLg~---~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~   92 (323)
T cd04193          16 VAVLLLAGGQGTRLGF---DGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFK   92 (323)
T ss_pred             EEEEEECCCcccccCC---CCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHH
Confidence            4589999999999954   8899999998   7999999999998842           125567777 46788999998


Q ss_pred             HhhhccCc---EEEEecC---------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeecc
Q 018060           66 EFEAKLGI---KIICSQE---------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEY  116 (361)
Q Consensus        66 ~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~  116 (361)
                      + ...+|+   .+.+..|                     ..|.|.++-.....     +.+...+-+++.+...|.+...
T Consensus        93 ~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~  171 (323)
T cd04193          93 E-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVK  171 (323)
T ss_pred             h-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccc
Confidence            7 333344   4444332                     23456665544332     3333344458999999995433


Q ss_pred             CH-HHHHHHHHHcCCceEEEEEEccCC-CCceeEEE-cCCCCeEeeeeecCC
Q 018060          117 PF-AEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVM-EESTGKVEKFVEKPK  165 (361)
Q Consensus       117 ~l-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~-~~~~~~v~~~~ek~~  165 (361)
                      .. -.++..+.+++.++.+-+.+...+ +.-|.+.. +.. -++.++.|-|.
T Consensus       172 ~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~-~~vvEysel~~  222 (323)
T cd04193         172 VADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGK-PQVVEYSEISD  222 (323)
T ss_pred             ccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCe-EEEEEeecCCH
Confidence            22 447778888888888876665433 33454443 322 35666666554

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.98  E-value=2.2e-09  Score=100.89  Aligned_cols=71  Identities=27%  Similarity=0.400  Sum_probs=65.8

Q ss_pred             EecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       251 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      +.++++|++++.|+ ++.|. +|+||++|+|+++|+|.+|+|+++|.|+++|+|.+|+|++++.|++++++.+
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            45678999999998 89995 7999999999999999999999999999999999999999999999988876

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.95  E-value=9.7e-09  Score=88.75  Aligned_cols=92  Identities=16%  Similarity=0.160  Sum_probs=58.5

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCC-EECCCcEEeceEEccCcEECCCCEEec-cEEcC----C----CE
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC-VVESGVRLSRCTVMRGVRIKKHACISS-SIIGW----H----ST  314 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~-~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~----~----~~  314 (361)
                      ++.++.|.+...+--+|.++++++|.+.++|..++ +||++ .| ++.|.++|.||+++.|.. +.|+.    +    +.
T Consensus       150 vp~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~  227 (319)
T TIGR03535       150 VPTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVIS  227 (319)
T ss_pred             CCCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEE
Confidence            35566666666666677777777776677777777 57774 33 566777777777777765 34444    4    56


Q ss_pred             ECCCcEEcCceEECCCeEECCceEEc
Q 018060          315 VGQWARVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       315 ig~~~~i~~~~~ig~~~~v~~~~~i~  340 (361)
                      ||++|.|+.++.|  +..||++++|.
T Consensus       228 IGe~~~IGagA~I--GI~IGd~~VVG  251 (319)
T TIGR03535       228 IGERCLLGANSGL--GISLGDDCVVE  251 (319)
T ss_pred             ECCCcEECCCCEE--CeEECCCCEEC
Confidence            6666666666666  55666666654

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.95  E-value=3.2e-09  Score=98.59  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=60.1

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      +.+++.+ +++.|++++.|+  +.+ .+|+|+++|+|+++|+|.+|+|++++.|++++++.+|+||++++|++++.+.+
T Consensus       281 i~~~~~i-~~~~Ig~~~~i~--~~v-~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~  355 (369)
T TIGR02092       281 YAENSKV-ENSLVANGCIIE--GKV-ENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAG  355 (369)
T ss_pred             EcCCCEE-EEeEEcCCCEEe--eEE-eCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCC
Confidence            3444444 344455555553  223 57999999999999999999999999999999999999999999999998866

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.95  E-value=1e-08  Score=76.49  Aligned_cols=79  Identities=24%  Similarity=0.280  Sum_probs=45.6

Q ss_pred             ccCCcEEecceEEcC--CCEECCCcEECCCcEECCCCEECCCcE---EeceEEccCcEECCCCEEec-cEEcCCCEECCC
Q 018060          245 LATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVR---LSRCTVMRGVRIKKHACISS-SIIGWHSTVGQW  318 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~  318 (361)
                      +++++.+.++++++.  ++.|++++.|++++.|+.+++|+.++.   +.+++|+++|.|+.++.+.. +.|++++.|+++
T Consensus         5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~   84 (101)
T cd03354           5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN   84 (101)
T ss_pred             eCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCC
Confidence            344555555555544  334555555555555555555555554   34556777777777777765 556666666555


Q ss_pred             cEEcC
Q 018060          319 ARVEN  323 (361)
Q Consensus       319 ~~i~~  323 (361)
                      +.+.+
T Consensus        85 ~~i~~   89 (101)
T cd03354          85 AVVTK   89 (101)
T ss_pred             CEECc
Confidence            55554

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=98.92  E-value=7.4e-08  Score=90.56  Aligned_cols=183  Identities=20%  Similarity=0.280  Sum_probs=114.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCcccee---CCcchHHHHHHHHHHc------------C-CCEEEEEccc-ChHHHHHH
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAV------------G-VTEVVLAINY-QPEVMLNF   63 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl---~g~pli~~~l~~l~~~------------g-i~~i~vv~~~-~~~~~~~~   63 (361)
                      |.+||||||.|+||+.   ..||+|+|+   .|+|+++++++++.+.            + .-+++|+++. ..+.++++
T Consensus       107 vavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~  183 (482)
T PTZ00339        107 VAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF  183 (482)
T ss_pred             eEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence            4589999999999975   899999999   4999999999999875            1 2255666554 67889999


Q ss_pred             HHHhhhccCc---EEEEecC----------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCee
Q 018060           64 LKEFEAKLGI---KIICSQE----------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVI  113 (361)
Q Consensus        64 l~~~~~~~~~---~i~~~~~----------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~  113 (361)
                      +++. ..+|+   ++.+..|                      ..|.|.++-.....     +.+...+-+++.+...|.+
T Consensus       184 f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~  262 (482)
T PTZ00339        184 LEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI  262 (482)
T ss_pred             HHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence            9862 12222   2322221                      12456665544432     3333344448999999996


Q ss_pred             eccCH-HHHHHHHHHcCC-ceEEEEEEccCCCCceeEEEcCCCCeEeeeeecCCC-------C----CCCeEEEEEEEeC
Q 018060          114 SEYPF-AEMIEFHKAHGG-EASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKL-------F----VGNKINAGIYLLN  180 (361)
Q Consensus       114 ~~~~l-~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~ek~~~-------~----~~~~~~~Giyi~~  180 (361)
                      ..... -.++-++...+. ++...+.+....+.-|.+......-.|.++.|-+..       .    .-...+...++|+
T Consensus       263 L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fs  342 (482)
T PTZ00339        263 LAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFS  342 (482)
T ss_pred             cccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEE
Confidence            54332 346677666666 555444454444445655433211256777664321       1    1123577888899


Q ss_pred             HhhHhhc
Q 018060          181 PAVLDRI  187 (361)
Q Consensus       181 ~~~l~~l  187 (361)
                      .++++.+
T Consensus       343 l~fl~~~  349 (482)
T PTZ00339        343 LDFLKKV  349 (482)
T ss_pred             HHHHHHH
Confidence            8888754

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=7.5e-09  Score=95.05  Aligned_cols=60  Identities=13%  Similarity=0.148  Sum_probs=38.2

Q ss_pred             CcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCce
Q 018060          272 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI  337 (361)
Q Consensus       272 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~  337 (361)
                      +|+|.++|.|++++.|.+|+|+++|+||+ +. .   +++ +.+|.++.+.++.+++.+++++.+.
T Consensus       296 ~Sii~~~~~i~~~~~i~~sIi~~~~~ig~-~~-~---i~d-~~~g~~~~i~~g~~~~~~~~~~~~~  355 (358)
T COG1208         296 NSIIMDNVVIGHGSYIGDSIIGENCKIGA-SL-I---IGD-VVIGINSEILPGVVVGPGSVVESGE  355 (358)
T ss_pred             eeEEEcCCEECCCCEEeeeEEcCCcEECC-ce-e---ecc-eEecCceEEcCceEeCCCccccCcc
Confidence            56666777777777777777777777766 11 1   666 6666666666666666666555544

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.88  E-value=2.2e-08  Score=75.52  Aligned_cols=71  Identities=10%  Similarity=0.034  Sum_probs=32.8

Q ss_pred             eEEccCcEECCCCEEecc----EEcCCCEECCCcEEcCceEECCCeEECCceEE-cCcEEccCceeecccCCCccc
Q 018060          290 CTVMRGVRIKKHACISSS----IIGWHSTVGQWARVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       290 ~~i~~~~~i~~~~~i~~~----~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ..|+++|.|++++.|...    .......+...+.|+++|.||.++.+..++.+ .++.+.+++.+.+++++++++
T Consensus        24 i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~~~~~~~~   99 (107)
T cd05825          24 VTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVY   99 (107)
T ss_pred             eEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCcCCCCCEE
Confidence            445555555555555321    11111222333344444444444444444444 244555566666666666554

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.87  E-value=1.7e-08  Score=71.35  Aligned_cols=50  Identities=14%  Similarity=0.146  Sum_probs=20.6

Q ss_pred             eEEccCcEECCCCEEeccEEc---CCCEECCCcEEcCceEECCCeEECCceEE
Q 018060          290 CTVMRGVRIKKHACISSSIIG---WHSTVGQWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       290 ~~i~~~~~i~~~~~i~~~~i~---~~~~ig~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      +.|++++.|+++++|.+....   ..+.||+++.+..++.+..++.|++++.+
T Consensus        19 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i   71 (78)
T cd00208          19 VVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVI   71 (78)
T ss_pred             EEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEE
Confidence            344444444444444443221   22444444444444444444444444443

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=98.86  E-value=6.9e-07  Score=83.37  Aligned_cols=181  Identities=18%  Similarity=0.228  Sum_probs=117.4

Q ss_pred             EEEEecCCCcccCCCCCCCCCcccee-CCcchHHHHHHHHHHc----CC-CEEEEEccc-ChHHHHHHHHHhhhccCcEE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAV----GV-TEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl-~g~pli~~~l~~l~~~----gi-~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i   75 (361)
                      +|.||||.|+||+.   ..||.++++ .|+++++.+++.+...    |. -..++.++. ..+..+++|+++.. ++.++
T Consensus        82 vlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~-~~~~i  157 (469)
T PLN02474         82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTN-SNIEI  157 (469)
T ss_pred             EEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCC-Cccce
Confidence            78899999999998   899999999 5789999888777543    32 355788887 45779999998542 23334


Q ss_pred             EEecC------------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018060           76 ICSQE------------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK  126 (361)
Q Consensus        76 ~~~~~------------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~  126 (361)
                      .+..|                        ..|.|.++-.....     +.+...+-+++++...|.+....=-.++.++.
T Consensus       158 ~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~  237 (469)
T PLN02474        158 HTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLI  237 (469)
T ss_pred             EEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHH
Confidence            33322                        23445555443332     33333444599999999953321133777888


Q ss_pred             HcCCceEEEEEEccCC-CCceeEEEcCCCCeEeeeeecCCC--------CCCCeEEEEEEEeCHhhHhhc
Q 018060          127 AHGGEASIMVTKVDEP-SKYGVVVMEESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI  187 (361)
Q Consensus       127 ~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v~~~~ek~~~--------~~~~~~~~Giyi~~~~~l~~l  187 (361)
                      .++++.++-+++...+ ..-|.+...+..-++.++.+-|..        ..-...++..++|+-++++++
T Consensus       238 ~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~  307 (469)
T PLN02474        238 QNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL  307 (469)
T ss_pred             hcCCceEEEEeecCCCCCCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHH
Confidence            8888877766654333 233544422211357777766542        133467999999999988776

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.85  E-value=4.4e-08  Score=81.96  Aligned_cols=95  Identities=18%  Similarity=0.249  Sum_probs=59.7

Q ss_pred             cceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEece-E---------------------EccCcEECCCCEEec-c
Q 018060          253 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRC-T---------------------VMRGVRIKKHACISS-S  307 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~-~---------------------i~~~~~i~~~~~i~~-~  307 (361)
                      +.+.||+++.|++++.|.  +++.||++|.|++++.|.+. +                     -...+.||+++.|+. +
T Consensus        64 ~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~  143 (192)
T PRK09677         64 GKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENV  143 (192)
T ss_pred             CeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCC
Confidence            566777777777777775  46777888888887777631 1                     012355666666653 5


Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS  352 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~  352 (361)
                      +|..++.||++|.|+++++|.++  +.+++.+.|   .|.+.+.+
T Consensus       144 ~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G---~Pa~~ik~  183 (192)
T PRK09677        144 TILPGVSIGNGCIVGANSVVTKS--IPENTVIAG---NPAKIIKK  183 (192)
T ss_pred             EEcCCCEECCCCEECCCCEECcc--cCCCcEEEe---cCCEEEec
Confidence            56666666666666666666653  566666665   45555544

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=98.84  E-value=5.3e-08  Score=83.50  Aligned_cols=116  Identities=24%  Similarity=0.282  Sum_probs=82.5

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      |||+|.+.++|+..      |.|.+++|+|||+|+++++.++. +++|+|.+..  +++.+.+.++    +..+......
T Consensus         2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~----g~~v~~~~~~   69 (217)
T PF02348_consen    2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY----GAKVIFRRGS   69 (217)
T ss_dssp             EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT----TSEEEE--TT
T ss_pred             EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc----CCeeEEcChh
Confidence            79999999999866      99999999999999999999986 7898877776  5677777765    4666655555


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCc
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGE  131 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~  131 (361)
                      ...++......+...... .++.++.+.||. +.. ..+.++++.+.+...+
T Consensus        70 ~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~  120 (217)
T PF02348_consen   70 LADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED  120 (217)
T ss_dssp             SSSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred             hcCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence            444443333333444433 444788899999 333 3589999998888764

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.83  E-value=3.9e-08  Score=78.09  Aligned_cols=86  Identities=15%  Similarity=0.233  Sum_probs=54.6

Q ss_pred             EEcCCCEECC-CcEECC-CcEECCCCEECCCcEEece--EEccC----------------cEECCCCEEeccEEcCCCEE
Q 018060          256 LVHESAQIGE-GCLIGP-DVAVGPGCVVESGVRLSRC--TVMRG----------------VRIKKHACISSSIIGWHSTV  315 (361)
Q Consensus       256 ~i~~~~~i~~-~~~i~~-~~~ig~~~~i~~~~~i~~~--~i~~~----------------~~i~~~~~i~~~~i~~~~~i  315 (361)
                      .||+++.|+. .+.++. .+.||++|.|++++.|...  +-..+                ..........+++||++|.|
T Consensus         3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I   82 (145)
T cd03349           3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWI   82 (145)
T ss_pred             EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEE
Confidence            4555555555 344432 5666666666666666422  11110                01112223456899999999


Q ss_pred             CCCcEEcCceEECCCeEECCceEEcC
Q 018060          316 GQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       316 g~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      |.++.+.+++.||++++|++++++..
T Consensus        83 g~~~~i~~gv~Ig~~~vIgags~V~~  108 (145)
T cd03349          83 GHGATILPGVTIGDGAVIAAGAVVTK  108 (145)
T ss_pred             CCCCEEeCCCEECCCCEECCCCEEcc
Confidence            99999988899999999999999865

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.82  E-value=2.7e-08  Score=75.31  Aligned_cols=33  Identities=30%  Similarity=0.507  Sum_probs=17.2

Q ss_pred             EecceEEcCCCEECC--CcEECCCcEECCCCEECC
Q 018060          251 IVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVES  283 (361)
Q Consensus       251 i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~  283 (361)
                      |..++.|+++++|.+  ++.|+++|.|+++|+|..
T Consensus         4 Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~   38 (109)
T cd04647           4 IGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYD   38 (109)
T ss_pred             ECCCcEECCCCEEecCCceEECCCCEECCCCEEEC
Confidence            444555555555544  555555555555555543

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.81  E-value=2.5e-08  Score=84.39  Aligned_cols=79  Identities=11%  Similarity=0.133  Sum_probs=40.2

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCC-EEeccEEcCCCE
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHA-CISSSIIGWHST  314 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~-~i~~~~i~~~~~  314 (361)
                      +++.+++.-+++++.++.|..++++|+.+.||+||.||.++.|..         ++|+++|.||.|+ .+.+.++|++|+
T Consensus       129 vM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~V  208 (271)
T COG2171         129 VMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCV  208 (271)
T ss_pred             EcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcE
Confidence            334444444555555555555555555566666666666666642         3455555555544 333344444444


Q ss_pred             ECCCcEEcC
Q 018060          315 VGQWARVEN  323 (361)
Q Consensus       315 ig~~~~i~~  323 (361)
                      |+.++.|.+
T Consensus       209 V~aGv~I~~  217 (271)
T COG2171         209 VAAGVFITQ  217 (271)
T ss_pred             EecceEEeC
Confidence            444333333

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.80  E-value=6.5e-09  Score=79.16  Aligned_cols=105  Identities=12%  Similarity=0.071  Sum_probs=81.5

Q ss_pred             CcEEecceEEcCCCEECCCcEEC---CCcEECCCCEECCCcEEec--------------eEEccCcEECCCCEEeccEEc
Q 018060          248 GANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR--------------CTVMRGVRIKKHACISSSIIG  310 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i~~~~i~  310 (361)
                      .+.|.+.+.|++++++++.+++-   +..+||+|+.|...+.|.|              -+||.+-...-+|..+...+|
T Consensus        20 Es~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvG   99 (190)
T KOG4042|consen   20 ESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVG   99 (190)
T ss_pred             ecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhc
Confidence            34456777777777777777654   4678999999998888865              256666666666666666899


Q ss_pred             CCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060          311 WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS  352 (361)
Q Consensus       311 ~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~  352 (361)
                      ++.+|+..|.+++|+.+.++|.||+++.+.....+|.+++..
T Consensus       100 d~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vY  141 (190)
T KOG4042|consen  100 DRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVY  141 (190)
T ss_pred             CcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEE
Confidence            999999999999999999999999999998777777766643

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.79  E-value=1.4e-08  Score=76.81  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=49.5

Q ss_pred             ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccC
Q 018060          289 RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  347 (361)
Q Consensus       289 ~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~  347 (361)
                      +..||+++.|+++|++..+.||..+.+|.++.|+.+|++-+.|+|-+++++....+.|-
T Consensus        84 p~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vpp  142 (184)
T KOG3121|consen   84 PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPP  142 (184)
T ss_pred             eeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCC
Confidence            66899999999999999999988888888888888888888888888888865555444

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=98.68  E-value=2.1e-06  Score=70.75  Aligned_cols=185  Identities=15%  Similarity=0.263  Sum_probs=111.5

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccC--hHHHHHHHHHhhhccCcEEEE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQ--PEVMLNFLKEFEAKLGIKIIC   77 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~--~~~~~~~l~~~~~~~~~~i~~   77 (361)
                      |-++|+.|..||--.|     -|.|+|++++|||+++|+++.++. +++++|.++..  .+.+..++.+.    |..+. 
T Consensus         3 ~I~~IiQARmgStRLp-----gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~----G~~vf-   72 (241)
T COG1861           3 MILVIIQARMGSTRLP-----GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH----GFYVF-   72 (241)
T ss_pred             cEEEEeeecccCccCC-----cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc----CeeEe-
Confidence            4577888876644334     499999999999999999999986 78999998873  35566666653    44442 


Q ss_pred             ecCCCCCCCchHHH-HHHhhccCCCCCcEEEEeCCe-eeccC-HHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCC
Q 018060           78 SQETEPLGTAGPLA-LARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST  154 (361)
Q Consensus        78 ~~~~~~~g~~~al~-~~~~~~~~~~~~~~lv~~~D~-~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~  154 (361)
                            .|+.+.++ +....++.-..+.++=+.||. +.... ++..++.|.+++++-+-.               .   
T Consensus        73 ------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~---------------~---  128 (241)
T COG1861          73 ------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSN---------------T---  128 (241)
T ss_pred             ------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccc---------------c---
Confidence                  23333332 222333222333778899999 44444 688899998877642211               0   


Q ss_pred             CeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCC-CC-ccccchHHhHHhcCceEEEEe---------cceEEEcCCH
Q 018060          155 GKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-PT-SIEKEVFPKIALEGKLFAMVL---------PGFWMDIGQP  223 (361)
Q Consensus       155 ~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-~~-~~~~d~l~~l~~~~~i~~~~~---------~~~~~~i~t~  223 (361)
                      +.              ..-++.-+|+...|...... .. .....+-+.+-.+.+++.+.+         +++-..++|.
T Consensus       129 ~~--------------p~G~~vEV~~a~~L~~a~k~~~e~~~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~  194 (241)
T COG1861         129 GA--------------PLGTDVEVMKARALKKAAKEALEAYYREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQ  194 (241)
T ss_pred             CC--------------ccccceeeeehHHHHHhHhhccchhhhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccH
Confidence            10              11245566777766654311 11 112233344444444444332         2355678999


Q ss_pred             HHHHHHHHHH
Q 018060          224 RDYITGLRLY  233 (361)
Q Consensus       224 ~dy~~a~~~~  233 (361)
                      +||--+...+
T Consensus       195 eD~~~~~~vy  204 (241)
T COG1861         195 EDFALAKAVY  204 (241)
T ss_pred             HHHHHHHHHH
Confidence            9997776544

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.63  E-value=2.6e-07  Score=73.42  Aligned_cols=58  Identities=22%  Similarity=0.149  Sum_probs=29.2

Q ss_pred             ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeecccCC
Q 018060          289 RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK  356 (361)
Q Consensus       289 ~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~  356 (361)
                      ++.|+++|.||.++.|     +.++.||+++.|+.+++|..+  +.+++++.+   .|...+.....+
T Consensus        73 ~~~Ig~~~~Ig~~~~i-----~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G---~Pa~~i~~~~~~  130 (145)
T cd03349          73 DVIIGNDVWIGHGATI-----LPGVTIGDGAVIAAGAVVTKD--VPPYAIVGG---NPAKVIRYRFDE  130 (145)
T ss_pred             CcEECCCCEECCCCEE-----eCCCEECCCCEECCCCEEccc--cCCCeEEEe---cCCEeehhhCCH
Confidence            3444444444444444     444555555555555555543  466666655   455555544433

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.62  E-value=4.4e-07  Score=73.47  Aligned_cols=79  Identities=25%  Similarity=0.290  Sum_probs=58.5

Q ss_pred             ccCCcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCCEEec-cEEcCC
Q 018060          245 LATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWH  312 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~  312 (361)
                      ...+..|++.+.||++.+|..  +.+|++.+.||++|.|..+++|+.         -.|++++.||.++.|-+ -.||++
T Consensus        64 ~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~  143 (194)
T COG1045          64 FLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDN  143 (194)
T ss_pred             hhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCC
Confidence            345666777777777777765  468888888888888888888862         37888888888887654 567777


Q ss_pred             CEECCCcEEcC
Q 018060          313 STVGQWARVEN  323 (361)
Q Consensus       313 ~~ig~~~~i~~  323 (361)
                      +.||+++++..
T Consensus       144 akIGA~sVVlk  154 (194)
T COG1045         144 AKIGAGSVVLK  154 (194)
T ss_pred             CEECCCceEcc
Confidence            77777777665

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.59  E-value=2.7e-07  Score=77.33  Aligned_cols=89  Identities=18%  Similarity=0.167  Sum_probs=58.0

Q ss_pred             cceEEcCCCEECCCcEE--CCCcEECCCCEECCCcEEe-ceEEccCcEECCC--CEEeccEEcCCCEECCCcEEcCceEE
Q 018060          253 GNVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKH--ACISSSIIGWHSTVGQWARVENMTIL  327 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~--~~i~~~~i~~~~~ig~~~~i~~~~~i  327 (361)
                      ....+|..+.++.++.+  ..+..||.++.+++++.|. +++.++...-..+  ....+++||++++||.++.|.+|+.|
T Consensus        66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I  145 (190)
T COG0110          66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI  145 (190)
T ss_pred             cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence            44555555555555543  2344566666666666654 2333333333222  22335899999999999999999999


Q ss_pred             CCCeEECCceEEcC
Q 018060          328 GEDVHVCDEIYSNG  341 (361)
Q Consensus       328 g~~~~v~~~~~i~~  341 (361)
                      |++++||+++++..
T Consensus       146 G~gavigagsVVtk  159 (190)
T COG0110         146 GEGAVIGAGSVVTK  159 (190)
T ss_pred             CCCcEEeeCCEEeC
Confidence            99999999988853

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=98.58  E-value=3.9e-06  Score=74.40  Aligned_cols=181  Identities=22%  Similarity=0.287  Sum_probs=117.2

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeC-CcchHHHHHHHHHHc----C-CCEEEEEccc-ChHHHHHHHHHhhhccCcEE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----G-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~-g~pli~~~l~~l~~~----g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i   75 (361)
                      +|+||||.|+||+-   ..||.++|+. |+++++..++++...    + .-..++.++. .++.++++|+++.. ...++
T Consensus         6 vl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~~~v   81 (300)
T cd00897           6 VLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VNVDI   81 (300)
T ss_pred             EEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-CccCe
Confidence            68899999999987   8899999995 889999999888653    3 2366888887 46789999998542 11222


Q ss_pred             EEecC------------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018060           76 ICSQE------------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK  126 (361)
Q Consensus        76 ~~~~~------------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~  126 (361)
                      .+..|                        ..|.|.++-.....     +.+...+-+++.+...|.+....=-.++.++.
T Consensus        82 ~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~~  161 (300)
T cd00897          82 HTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHMV  161 (300)
T ss_pred             EEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHHH
Confidence            22211                        12445554443332     23333344599999999954321133778888


Q ss_pred             HcCCceEEEEEEccCCC-CceeEEEcCCCCeEeeeeecCCC----C----CCCeEEEEEEEeCHhhHhhc
Q 018060          127 AHGGEASIMVTKVDEPS-KYGVVVMEESTGKVEKFVEKPKL----F----VGNKINAGIYLLNPAVLDRI  187 (361)
Q Consensus       127 ~~~~~~~i~~~~~~~~~-~~~~v~~~~~~~~v~~~~ek~~~----~----~~~~~~~Giyi~~~~~l~~l  187 (361)
                      .+++++.+-+++...+. .-|.+...+..=++.++.|-|..    +    .-...+++.++|+-++++.+
T Consensus       162 ~~~~~~~~evv~Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~  231 (300)
T cd00897         162 DNKAEYIMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV  231 (300)
T ss_pred             hcCCceEEEEeecCCCCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence            88888888666654443 44544432211357777776642    1    23467888899998888765

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.55  E-value=1.2e-07  Score=72.27  Aligned_cols=108  Identities=21%  Similarity=0.188  Sum_probs=86.2

Q ss_pred             cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec--------------cEEcCCCE
Q 018060          253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS--------------SIIGWHST  314 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------~~i~~~~~  314 (361)
                      ..+.|.|++.++..+-|.++.+|+++|++.+.+++.    .-+||+|+.|.+.++|.+              -+||.+.+
T Consensus         7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv   86 (190)
T KOG4042|consen    7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV   86 (190)
T ss_pred             ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence            347788999999999999999999999999999885    468999999999998885              15777776


Q ss_pred             ECCCcE-----EcCceEECCCeEECCceEE-cCcEEccCceeec--ccCCCccc
Q 018060          315 VGQWAR-----VENMTILGEDVHVCDEIYS-NGGVVLPHKEIKS--SILKPEIV  360 (361)
Q Consensus       315 ig~~~~-----i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~--~~~~~~~~  360 (361)
                      ..-+|.     +++..+|+..+.+|+|+.+ .+|.+++++++-.  ++|+++++
T Consensus        87 FeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~v  140 (190)
T KOG4042|consen   87 FEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV  140 (190)
T ss_pred             EEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceE
Confidence            665554     4556777788888888888 5889999999855  77777654

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2e-07  Score=79.77  Aligned_cols=72  Identities=21%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             ECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          269 IGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       269 i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      |-++++|.+.+++.+.++|+ |+.|+.++.||++++|.+|+|.++|.|.+++.+.. ++||-++.||.=+.+.+
T Consensus       285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~-sIigw~s~iGrWaRVe~  357 (407)
T KOG1460|consen  285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH-SIIGWKSSIGRWARVEG  357 (407)
T ss_pred             EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEe-eeecccccccceeeecc
Confidence            33455555555555555555 56668888889999999999999999999999888 88888888885555543

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.52  E-value=2.6e-07  Score=75.72  Aligned_cols=81  Identities=22%  Similarity=0.308  Sum_probs=56.3

Q ss_pred             eEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEeceEEccCcEECC---CCEEeccEEcCCCEECCCcEEcCceEECC
Q 018060          255 VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWARVENMTILGE  329 (361)
Q Consensus       255 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~ig~~~~i~~~~~ig~  329 (361)
                      +-|+|.++||.+..+.  -+.+||+-++||+++.     |++++++|.   ++--+.-.||+++.||.++.|.+++.||+
T Consensus       149 vdihpaa~ig~gilldhatgvvigeTAvvg~~vS-----ilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGe  223 (269)
T KOG4750|consen  149 VDIHPAAKIGKGILLDHATGVVIGETAVVGDNVS-----ILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGE  223 (269)
T ss_pred             ccccchhhcccceeeccccceeecceeEecccee-----eecceeeccccccccccCCcccCCeEEccccEEeCCeeECC
Confidence            3577777777776664  1335555555555444     456666653   12222348999999999999999999999


Q ss_pred             CeEECCceEEc
Q 018060          330 DVHVCDEIYSN  340 (361)
Q Consensus       330 ~~~v~~~~~i~  340 (361)
                      +++|++|+++.
T Consensus       224 gavIaAGsvV~  234 (269)
T KOG4750|consen  224 GAVIAAGSVVL  234 (269)
T ss_pred             CcEEeccceEE
Confidence            99999999873

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.45  E-value=3.1e-07  Score=69.57  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             ccCCcEEe---cceEEcCCCEECCCcEECC------------CcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEE
Q 018060          245 LATGANIV---GNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII  309 (361)
Q Consensus       245 ~~~~~~i~---~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i  309 (361)
                      +.+++.|.   .++.+|+.++++.+++|++            +..||+.+.|++.|.+.-+.|+..+++|.||+|++   
T Consensus        42 v~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGr---  118 (184)
T KOG3121|consen   42 VEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGR---  118 (184)
T ss_pred             EeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcC---
Confidence            34566665   4667777777777777764            23577778888887777777777777777666554   


Q ss_pred             cCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          310 GWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       310 ~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                        +|++.+-|+|.+++++.....+.+-+.+.+
T Consensus       119 --rCVlkdCc~ild~tVlPpet~vppy~~~~g  148 (184)
T KOG3121|consen  119 --RCVLKDCCRILDDTVLPPETLVPPYSTIGG  148 (184)
T ss_pred             --ceEhhhheeccCCcccCcccccCCceEEcC
Confidence              444444455555555555555555555543

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.40  E-value=1.3e-06  Score=86.94  Aligned_cols=73  Identities=18%  Similarity=0.186  Sum_probs=47.1

Q ss_pred             cEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC-cEEccCcee
Q 018060          273 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEI  350 (361)
Q Consensus       273 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v  350 (361)
                      +.||++|.|+++|.|.. +..++..+    .+.+++||++|.||.+++|.+++.||+++.|++++.+.. ..+-+++..
T Consensus       617 v~IGd~~~I~~~~~i~~-h~~~~~~~----~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~  690 (695)
T TIGR02353       617 VTIGDDSTLNEGSVIQT-HLFEDRVM----KSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRW  690 (695)
T ss_pred             eEECCCCEECCCCEEEe-cccccccc----ccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEE
Confidence            46666666666666543 12222111    244578888888888888888888888888888888753 345454444

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.39  E-value=1.1e-06  Score=87.50  Aligned_cols=65  Identities=15%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             CCcEECCCCEECCCcEEeceEEccCcEECCCCE-EeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          271 PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC-ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       271 ~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~-i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +...||+||.|+++|.+.+..+      ..+.. ++..+||++|.||.+|+|.++++||++++|++++.+.+
T Consensus       130 ~li~IG~~~~I~~~v~l~~~~~------~~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~  195 (695)
T TIGR02353       130 DLLTIGAGTIVRKEVMLLGYRA------ERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQG  195 (695)
T ss_pred             CceEECCCCEECCCCEEEcccC------CCCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecC
Confidence            3455677777777666643222      22222 33347777888888888877788888888887777754

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.37  E-value=6.9e-07  Score=77.75  Aligned_cols=94  Identities=14%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             EecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCC
Q 018060          251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGED  330 (361)
Q Consensus       251 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~  330 (361)
                      ...+...-+++.|-.+..+.+-..+|++|.||++     ++||++|.|++++.|.+|++..+..++..+.+.. +++|-+
T Consensus       249 ~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~-----vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s-~ivg~~  322 (371)
T KOG1322|consen  249 KYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPN-----VVIGPRVRIEDGVRLQDSTILGADYYETHSEISS-SIVGWN  322 (371)
T ss_pred             ccCCccccCCccccccEeeccccccCCccEECCC-----ceECCCcEecCceEEEeeEEEccceechhHHHHh-hhcccc
Confidence            3444455555666555555444455555555554     5568888888999999998888888888887776 777777


Q ss_pred             eEECCceEEcC-cEEccCcee
Q 018060          331 VHVCDEIYSNG-GVVLPHKEI  350 (361)
Q Consensus       331 ~~v~~~~~i~~-~~i~~~~~v  350 (361)
                      +.||.+..+.+ +.++-+..|
T Consensus       323 ~~IG~~~~id~~a~lG~nV~V  343 (371)
T KOG1322|consen  323 VPIGIWARIDKNAVLGKNVIV  343 (371)
T ss_pred             ccccCceEEecccEeccceEE
Confidence            77777776643 333444333

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.24  E-value=8.5e-06  Score=67.29  Aligned_cols=109  Identities=16%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             ccCCcEEe-cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-cEEcCCCEECCCcEEc
Q 018060          245 LATGANIV-GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE  322 (361)
Q Consensus       245 ~~~~~~i~-~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~  322 (361)
                      +++++.+. ..+.+..++.||+++.+ ...++|+...+|+++.|...++..++.|+..|.+.+ .+...++.||.++.|.
T Consensus         6 vPp~Tr~e~~~ivv~gdViIG~nS~l-~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~   84 (277)
T COG4801           6 VPPNTRVEEAIIVVKGDVIIGKNSML-KYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIK   84 (277)
T ss_pred             cCCCCceeeeeEEEeccEEEccccee-eeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceee
Confidence            45555444 33444455556666666 466888999999999998888888999999999886 5778889999999999


Q ss_pred             CceEECCCeEECCceEEcCcEEccCceeeccc
Q 018060          323 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI  354 (361)
Q Consensus       323 ~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~  354 (361)
                      +..+++.+-.+|+++.|+++++..+-.+.++.
T Consensus        85 gkl~v~gdLdig~dV~Ieggfva~g~Ivirnp  116 (277)
T COG4801          85 GKLTVIGDLDIGADVIIEGGFVAKGWIVIRNP  116 (277)
T ss_pred             eeEEEecccccccceEEecCeeecceEEEcCC
Confidence            98999999999999999998888777776643

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=98.22  E-value=2.2e-05  Score=74.03  Aligned_cols=180  Identities=19%  Similarity=0.250  Sum_probs=115.2

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc--------------C-CCEEEEEccc-ChHHHHHH
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------------G-VTEVVLAINY-QPEVMLNF   63 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~--------------g-i~~i~vv~~~-~~~~~~~~   63 (361)
                      +|+||||.|+||+.   ..||.|++++   ++++++...+++.+.              + .-..+|.++. ..+.++++
T Consensus       119 vvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~f  195 (493)
T PLN02435        119 VVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF  195 (493)
T ss_pred             EEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHH
Confidence            67889999999998   8999999885   899999998876432              1 1255888887 56789999


Q ss_pred             HHHhhhccCc---EEEEecC---------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeee
Q 018060           64 LKEFEAKLGI---KIICSQE---------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVIS  114 (361)
Q Consensus        64 l~~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~  114 (361)
                      |++. ..+|.   ++.+..|                     ..|.|.++-.....     +.+...+-+++.+...|.+.
T Consensus       196 f~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L  274 (493)
T PLN02435        196 FESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL  274 (493)
T ss_pred             HHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence            9872 22232   2333322                     23567665544332     33333444488999999954


Q ss_pred             ccC-HHHHHHHHHHcCCceEEEEEEccCC-CCceeEEEc-CCCC--eEeeeeecCCC-----------CCCCeEEEEEEE
Q 018060          115 EYP-FAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVME-ESTG--KVEKFVEKPKL-----------FVGNKINAGIYL  178 (361)
Q Consensus       115 ~~~-l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~-~~~~--~v~~~~ek~~~-----------~~~~~~~~Giyi  178 (361)
                      ... --.++..+..++.++.+-+.+...+ +.-|.+... .+ |  .|.+|.|-+..           ..-...+.+.++
T Consensus       275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~-g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~  353 (493)
T PLN02435        275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG-GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHM  353 (493)
T ss_pred             ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC-CCEEEEEeccCCHHHHhccCccccccccchhhHHHhh
Confidence            333 2447778888888877766655433 344666542 22 3  46667655431           112335677888


Q ss_pred             eCHhhHhhc
Q 018060          179 LNPAVLDRI  187 (361)
Q Consensus       179 ~~~~~l~~l  187 (361)
                      |+.++++.+
T Consensus       354 fs~~fL~~~  362 (493)
T PLN02435        354 FTLDFLNQV  362 (493)
T ss_pred             ccHHHHHHH
Confidence            999988766

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=98.16  E-value=3.6e-05  Score=68.56  Aligned_cols=180  Identities=13%  Similarity=0.141  Sum_probs=109.4

Q ss_pred             EEEEecCCCcccCCCCCCCCCcccee---CCcchHHHHHHHHHHcC---------CCEEEEEccc-ChHHHHHHHHHhhh
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAVG---------VTEVVLAINY-QPEVMLNFLKEFEA   69 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl---~g~pli~~~l~~l~~~g---------i~~i~vv~~~-~~~~~~~~l~~~~~   69 (361)
                      +|+||+|.|+||+-   ..||.++|+   .|+++++..++++.+..         .-..+|.++. .+++++++|++.. 
T Consensus         3 ~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~-   78 (315)
T cd06424           3 FVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN-   78 (315)
T ss_pred             EEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC-
Confidence            68999999999998   899999999   48999999988876532         2366888887 5678999998622 


Q ss_pred             ccC---cEEEEec------------------------CCCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccC
Q 018060           70 KLG---IKIICSQ------------------------ETEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYP  117 (361)
Q Consensus        70 ~~~---~~i~~~~------------------------~~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~  117 (361)
                      .+|   .++.+..                        ...|.|.++-.....     +.+...+-+++.+...|......
T Consensus        79 yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~  158 (315)
T cd06424          79 YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFK  158 (315)
T ss_pred             ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhc
Confidence            122   1222221                        122456655444332     23333444478888888844333


Q ss_pred             -HHHHHHHHHHcCCceEEEEEEccCCCCceeEEE-cCCCC--eE--eeeeecCC----C------------CCCCeEEEE
Q 018060          118 -FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM-EESTG--KV--EKFVEKPK----L------------FVGNKINAG  175 (361)
Q Consensus       118 -l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~-~~~~~--~v--~~~~ek~~----~------------~~~~~~~~G  175 (361)
                       .-.++-.+..++.++...+.+....+.-|.+.. +..+|  .|  .+|.|-+.    .            ......+++
T Consensus       159 adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi~  238 (315)
T cd06424         159 AIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNIN  238 (315)
T ss_pred             cChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCeee
Confidence             344556666667777766556544455665543 21113  33  55544331    0            111146788


Q ss_pred             EEEeCHhhHhh
Q 018060          176 IYLLNPAVLDR  186 (361)
Q Consensus       176 iyi~~~~~l~~  186 (361)
                      .++|+-+.+..
T Consensus       239 ~~~f~l~~~~~  249 (315)
T cd06424         239 QLVFSLGPYMD  249 (315)
T ss_pred             eEEEeHHHHHH
Confidence            88888776654

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=98.11  E-value=0.00019  Score=66.92  Aligned_cols=181  Identities=22%  Similarity=0.281  Sum_probs=111.6

Q ss_pred             EEEEecCCCcccCCCCCCCCCcccee-CCcchHHHHHHHHHH----cC-CCEEEEEccc-ChHHHHHHHHHhhhccCcEE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKA----VG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl-~g~pli~~~l~~l~~----~g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i   75 (361)
                      +|+||||.|+||+.   ..||.++|+ .++++++..++.+..    .+ .-..++.++. ..+++++++++|... ..++
T Consensus        59 vl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~-~~~v  134 (420)
T PF01704_consen   59 VLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL-DVDV  134 (420)
T ss_dssp             EEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS-SCCE
T ss_pred             EEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC-Ccce
Confidence            67899999999988   889999999 477888888877765    23 3466778887 568899999985321 1222


Q ss_pred             EEecC-----------------C------C---CCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccCHHHHHHH
Q 018060           76 ICSQE-----------------T------E---PLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYPFAEMIEF  124 (361)
Q Consensus        76 ~~~~~-----------------~------~---~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~  124 (361)
                      .+..|                 .      .   |.|.++-.....     +.+...+-+++.+...|.+....=-.++.+
T Consensus       135 ~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~  214 (420)
T PF01704_consen  135 FFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGY  214 (420)
T ss_dssp             EEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHH
T ss_pred             EEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHH
Confidence            22211                 0      1   336665443332     333334445999999999443322347888


Q ss_pred             HHHcCCceEEEEEEccCC-CCceeEEEcCCCCeEeeeeecCCC--------CCCCeEEEEEEEeCHhhHhhc
Q 018060          125 HKAHGGEASIMVTKVDEP-SKYGVVVMEESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI  187 (361)
Q Consensus       125 ~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v~~~~ek~~~--------~~~~~~~~Giyi~~~~~l~~l  187 (361)
                      +.+++.++.+-+++...+ ..-|.+...+..-++.++.+-|..        ......+++-.+|+-.+++++
T Consensus       215 ~~~~~~~~~~evv~Kt~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~  286 (420)
T PF01704_consen  215 MIEKNADFGMEVVPKTSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL  286 (420)
T ss_dssp             HHHTT-SEEEEEEE-CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred             HHhccchhheeeeecCCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence            888888888877776444 344555433211245566554431        123467888889999988766

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=98.11  E-value=2.1e-05  Score=65.16  Aligned_cols=96  Identities=11%  Similarity=0.101  Sum_probs=61.9

Q ss_pred             CCCccceeCC--cchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060           21 VPKPLVEFAN--KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (361)
Q Consensus        21 ~pK~llpl~g--~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~   98 (361)
                      .+|+|+++.|  +|||+++++.+.. .+++++|+++.+.. +    ..    .++.+.. ......|...++..+.....
T Consensus         3 ~dK~ll~~~g~~~~ll~~~~~~l~~-~~~~iivv~~~~~~-~----~~----~~~~~i~-d~~~g~gpl~~~~~gl~~~~   71 (178)
T PRK00576          3 RDKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPGQP-L----PE----LPAPVLR-DELRGLGPLPATGRGLRAAA   71 (178)
T ss_pred             CCCEeeEeCCCCcCHHHHHHHHHhh-cCCEEEEECCCCcc-c----cc----CCCCEec-cCCCCCCcHHHHHHHHHHHH
Confidence            4899999999  9999999998764 58999999986421 1    11    1233332 22333466666665554331


Q ss_pred             CCCCCcEEEEeCCe-eec-cCHHHHHHHHHH
Q 018060           99 DDTGEPFFVLNSDV-ISE-YPFAEMIEFHKA  127 (361)
Q Consensus        99 ~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~  127 (361)
                      ....+.+++++||+ +.. ..++.+++.+..
T Consensus        72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~  102 (178)
T PRK00576         72 EAGARLAFVCAVDMPYLTVELIDDLARPAAQ  102 (178)
T ss_pred             hcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            12345899999999 434 347777776543

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.06  E-value=0.00012  Score=67.57  Aligned_cols=179  Identities=25%  Similarity=0.302  Sum_probs=112.6

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeC-CcchHHHHHHHHHHc----CC-CEEEEEcccChHHHHHHHHHhhhccC---c
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----GV-TEVVLAINYQPEVMLNFLKEFEAKLG---I   73 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~-g~pli~~~l~~l~~~----gi-~~i~vv~~~~~~~~~~~l~~~~~~~~---~   73 (361)
                      +|.||||.|+||+.   ..||.++++. |+++++.+.+.+..+    ++ -..++.++...++...++... ..++   .
T Consensus       108 vl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y~~~~k~  183 (472)
T COG4284         108 VLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DYFGLDKE  183 (472)
T ss_pred             EEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hhcCCCHH
Confidence            68899999999999   8999999998 999999998877654    32 255777777777777777651 1111   1


Q ss_pred             EEEEecC-----------------------CCCCCCch---HHHH--HHhhccCCCCCcEEEEeCCeee-ccCHHHHHHH
Q 018060           74 KIICSQE-----------------------TEPLGTAG---PLAL--ARDKLIDDTGEPFFVLNSDVIS-EYPFAEMIEF  124 (361)
Q Consensus        74 ~i~~~~~-----------------------~~~~g~~~---al~~--~~~~~~~~~~~~~lv~~~D~~~-~~~l~~~~~~  124 (361)
                      +|.+..|                       .-|.|.++   ++..  ..+.+...+-+.+.|.+.|.+. ..|+. ++..
T Consensus       184 ~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~-~lg~  262 (472)
T COG4284         184 DIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK-FLGF  262 (472)
T ss_pred             HeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-HHHH
Confidence            1221111                       12345543   3332  2233333455589999999933 23443 7777


Q ss_pred             HHHcCCceEEEEEEc-cCCCCceeEE-EcCCCCeEeeeeecCCC----CCCC------eEE-EEEEEeCHhhHhhc
Q 018060          125 HKAHGGEASIMVTKV-DEPSKYGVVV-MEESTGKVEKFVEKPKL----FVGN------KIN-AGIYLLNPAVLDRI  187 (361)
Q Consensus       125 ~~~~~~~~~i~~~~~-~~~~~~~~v~-~~~~~~~v~~~~ek~~~----~~~~------~~~-~Giyi~~~~~l~~l  187 (361)
                      +..++.+.++-++.. .....-|++. .+.. -+++++.+-|..    +.+.      ..+ .++++++.+.+...
T Consensus       263 ~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~  337 (472)
T COG4284         263 MAETNYEYLMETTDKTKADEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEA  337 (472)
T ss_pred             HHhcCcceeEEEeecccccccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhh
Confidence            778888777766654 3334456554 6665 688888877652    1111      223 67788877766543

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=98.04  E-value=8.6e-05  Score=75.36  Aligned_cols=206  Identities=12%  Similarity=0.161  Sum_probs=109.5

Q ss_pred             cEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEE--ccCCCCceeEEEcCCC-CeEeeeeecCCC--------CCCCeE
Q 018060          104 PFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK--VDEPSKYGVVVMEEST-GKVEKFVEKPKL--------FVGNKI  172 (361)
Q Consensus       104 ~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~~~~-~~v~~~~ek~~~--------~~~~~~  172 (361)
                      .+||..||.+..++  +.+...  ..++++.....  .+-.+++|++..+.+. +++..+..||..        ...-+.
T Consensus       154 g~li~~gDv~~~f~--~~~~~~--~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~  229 (974)
T PRK13412        154 HTLIASGDVYIRSE--QPLQDI--PEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLM  229 (974)
T ss_pred             ceEEEecchhhhcc--ccccCC--CccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEE
Confidence            57888888744332  111111  11222222222  2334578888888642 577788888871        122368


Q ss_pred             EEEEEEeCHhhHhhccCC------C----CccccchHHhHHhc----------CceEEEEe-cceEEEcCCHHHHHHHHH
Q 018060          173 NAGIYLLNPAVLDRIELR------P----TSIEKEVFPKIALE----------GKLFAMVL-PGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       173 ~~Giyi~~~~~l~~l~~~------~----~~~~~d~l~~l~~~----------~~i~~~~~-~~~~~~i~t~~dy~~a~~  231 (361)
                      ++|+|+|+.+..+.|...      +    .++..||+..|-..          -++..... ++.++.++|-.+|+...-
T Consensus       230 D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~~~  309 (974)
T PRK13412        230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISSTL  309 (974)
T ss_pred             eeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcCch
Confidence            999999999987765321      1    13334555443211          12333333 357889999988886432


Q ss_pred             HHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCC-cEEeceEEccCcEECCCCEEeccE-E
Q 018060          232 LYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESG-VRLSRCTVMRGVRIKKHACISSSI-I  309 (361)
Q Consensus       232 ~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~-~~i~~~~i~~~~~i~~~~~i~~~~-i  309 (361)
                      .+.....-+. ...+..  +.      ++    +.+++ -++++..++.++++ +.|.||.|+.++.||++|+|.+.- .
T Consensus       310 ~~q~~~~~~~-~i~~~~--~~------~~----~~~~v-~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~  375 (974)
T PRK13412        310 AVQNLVTDQR-RIMHRK--VK------PH----PAMFV-QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPEN  375 (974)
T ss_pred             hHHHHhhhhh-hhhccc--cC------CC----CceEE-EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccccc
Confidence            2222111100 000000  00      00    01122 37777777777776 346678888888888888887763 3


Q ss_pred             cCCCEECCCcEEcCceEEC
Q 018060          310 GWHSTVGQWARVENMTILG  328 (361)
Q Consensus       310 ~~~~~ig~~~~i~~~~~ig  328 (361)
                      ..+..|-+++.|.. +-+|
T Consensus       376 ~~~~~vP~~~ci~~-vpl~  393 (974)
T PRK13412        376 SWNLDLPEGVCIDV-VPVG  393 (974)
T ss_pred             ccceecCCCcEEEE-EEcC
Confidence            33455666665554 4443

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=98.01  E-value=5.6e-05  Score=70.81  Aligned_cols=80  Identities=18%  Similarity=0.367  Sum_probs=49.7

Q ss_pred             cEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeEEEcCCCC---------eEeeeeecCCC------
Q 018060          104 PFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTG---------KVEKFVEKPKL------  166 (361)
Q Consensus       104 ~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~~~~~---------~v~~~~ek~~~------  166 (361)
                      -++|..+|+++...-...+. +.  +..++++..+.  +-...+|++.++.+ +         .+.++..||..      
T Consensus        55 Gv~V~s~D~vl~~~~~~~~~-~~--~~g~~~la~p~~~~~at~HGVfv~~~~-~~~~~~~~~~~v~~~L~KpS~eem~~~  130 (414)
T PF07959_consen   55 GVLVCSGDMVLSVPDDPLID-WD--EPGVTALAHPSSLEYATNHGVFVLDRQ-GPDEEDLEYREVKDFLQKPSEEEMRAS  130 (414)
T ss_pred             ceEEEecccccccCccccCC-CC--CCCEEEEEeeCCHHHhcCCeEEEeCCC-CCccccchhhhHHHhhcCCCHHHHHhC
Confidence            68999999533322121221 11  23455555554  23457899999987 5         68888888861      


Q ss_pred             -----CCCCeEEEEEEEeCHhhHhhc
Q 018060          167 -----FVGNKINAGIYLLNPAVLDRI  187 (361)
Q Consensus       167 -----~~~~~~~~Giyi~~~~~l~~l  187 (361)
                           ...-..++|++.|+.+..+.|
T Consensus       131 ~av~~~~~~~ldsG~~~~s~~~~e~L  156 (414)
T PF07959_consen  131 GAVLPDGNVLLDSGIVFFSSKAVESL  156 (414)
T ss_pred             CcccCCCcccccccceeccHHHHHHH
Confidence                 112246899999998877655

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.98  E-value=8.8e-06  Score=47.89  Aligned_cols=32  Identities=16%  Similarity=0.302  Sum_probs=14.5

Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      .|++++.|++++.|.+++.||+++.|++++.+
T Consensus         3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            34444444444444444444444444444444

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.92  E-value=3.9e-05  Score=63.45  Aligned_cols=72  Identities=14%  Similarity=0.219  Sum_probs=54.4

Q ss_pred             cEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEE
Q 018060          273 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV  344 (361)
Q Consensus       273 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i  344 (361)
                      .+...++.||.++.+.-.++++.+.+|+++.|.+.+++.++.|+.||++..+++++.++-||+.+.|++..+
T Consensus        17 ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~   88 (277)
T COG4801          17 IVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLT   88 (277)
T ss_pred             EEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEE
Confidence            345556667777777777778888888888888888888888888888877788888888888887766444

>PLN02830 UDP-sugar pyrophosphorylase

Probab=97.77  E-value=0.00081  Score=65.53  Aligned_cols=143  Identities=17%  Similarity=0.214  Sum_probs=93.8

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc-----------C-CCEEEEEccc-ChHHHHHHHHH
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV-----------G-VTEVVLAINY-QPEVMLNFLKE   66 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~-----------g-i~~i~vv~~~-~~~~~~~~l~~   66 (361)
                      +|+||+|.|+||+-   ..||.++|++   |+++++..++++.+.           + .-..+|.++. .++.++++|++
T Consensus       131 vllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~  207 (615)
T PLN02830        131 FVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLER  207 (615)
T ss_pred             EEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHH
Confidence            68899999999998   7899999984   899999999887654           1 2357888887 46789999997


Q ss_pred             hhhccC---cEEEEecC------------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeee
Q 018060           67 FEAKLG---IKIICSQE------------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVIS  114 (361)
Q Consensus        67 ~~~~~~---~~i~~~~~------------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~  114 (361)
                      .. .+|   .++.++.|                        ..|.|.++-.....     +.+...+-+++.+...|...
T Consensus       208 n~-~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L  286 (615)
T PLN02830        208 ND-YFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGL  286 (615)
T ss_pred             CC-ccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchh
Confidence            32 222   12322221                        12445554433332     23333444488999999933


Q ss_pred             cc-CHHHHHHHHHHcCCceEEEEEEccCCCCceeEE
Q 018060          115 EY-PFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV  149 (361)
Q Consensus       115 ~~-~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~  149 (361)
                      .. ..-.++.++..++.++.+.+++......-|.+.
T Consensus       287 ~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~  322 (615)
T PLN02830        287 VFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIA  322 (615)
T ss_pred             hhcccHHHhHHHHhcCCceEEEEEECCCCcccceEE
Confidence            22 236688888888888887777664444455444

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=97.77  E-value=0.00094  Score=56.06  Aligned_cols=87  Identities=17%  Similarity=0.311  Sum_probs=61.1

Q ss_pred             CcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060           30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN  109 (361)
Q Consensus        30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~  109 (361)
                      -+||++++++.+.++++++++++++.  +++.+++..    .++.+.  .+.. .|...++..+.+.+... .+.+++++
T Consensus        29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~i--~~~~-~G~~~si~~al~~~~~~-~~~vlv~~   98 (195)
T TIGR03552        29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPVL--RDPG-PGLNNALNAALAEAREP-GGAVLILM   98 (195)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEEE--ecCC-CCHHHHHHHHHHHhhcc-CCeEEEEe
Confidence            38999999999999877888888774  344444433    245443  3333 38899999998877432 23799999


Q ss_pred             CCe--eeccCHHHHHHHHH
Q 018060          110 SDV--ISEYPFAEMIEFHK  126 (361)
Q Consensus       110 ~D~--~~~~~l~~~~~~~~  126 (361)
                      +|+  +....++++++.+.
T Consensus        99 ~D~P~l~~~~i~~l~~~~~  117 (195)
T TIGR03552        99 ADLPLLTPRELKRLLAAAT  117 (195)
T ss_pred             CCCCCCCHHHHHHHHHhcc
Confidence            999  44456888887653

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=97.72  E-value=0.00025  Score=59.27  Aligned_cols=42  Identities=12%  Similarity=0.158  Sum_probs=26.0

Q ss_pred             cEEcCceEECCCeEECCceEEc-CcEEccCceeecccCCCccc
Q 018060          319 ARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++|++++.||.++.|.+|++|. ++.+++++.+.+++|+++++
T Consensus       125 v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv  167 (190)
T COG0110         125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIV  167 (190)
T ss_pred             eEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEE
Confidence            4455555555555555555553 55667777788888887664

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=97.71  E-value=6.1e-05  Score=62.11  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=15.7

Q ss_pred             ecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEE
Q 018060          252 VGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRL  287 (361)
Q Consensus       252 ~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i  287 (361)
                      ++.+.||.+-....  +.+||+.++||.+|.|..++.+
T Consensus       152 hpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtl  189 (269)
T KOG4750|consen  152 HPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTL  189 (269)
T ss_pred             cchhhcccceeeccccceeecceeEeccceeeecceee
Confidence            34444444433322  3344444444444444444444

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=96.23  E-value=0.046  Score=43.72  Aligned_cols=107  Identities=15%  Similarity=0.141  Sum_probs=71.8

Q ss_pred             ceeCCc-chHHHHHHHHHHc--CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060           26 VEFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (361)
Q Consensus        26 lpl~g~-pli~~~l~~l~~~--gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~  102 (361)
                      +|.-|. ..|..+|+.+.+.  ...+|+|+-+...+...+.++++.. ....+.+.......|.+.+...+.+..  .++
T Consensus         4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a--~~~   80 (169)
T PF00535_consen    4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHA--KGE   80 (169)
T ss_dssp             EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH----SS
T ss_pred             EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccccccccccccccc--cee
Confidence            455555 4889999988887  3567777666665667777776543 233444455554557788888888887  333


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHHcCCceEEEE
Q 018060          103 EPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV  136 (361)
Q Consensus       103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i~~  136 (361)
                       .++++..|.+...+ ++.+++.+.+.+.++.+..
T Consensus        81 -~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~  114 (169)
T PF00535_consen   81 -YILFLDDDDIISPDWLEELVEALEKNPPDVVIGS  114 (169)
T ss_dssp             -EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred             -EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence             99999999977777 8999999888766554443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=96.00  E-value=0.12  Score=40.36  Aligned_cols=97  Identities=21%  Similarity=0.210  Sum_probs=66.1

Q ss_pred             eeCC-cchHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCC
Q 018060           27 EFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE  103 (361)
Q Consensus        27 pl~g-~pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~  103 (361)
                      |..| .+++.++++++.+..  ..+++++.+...+...+.+.+.... ...+.........|.+.++..+....  . .+
T Consensus         4 ~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~d   79 (156)
T cd00761           4 PAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAA--R-GE   79 (156)
T ss_pred             eecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHh--c-CC
Confidence            4433 479999999999987  7788888888766777777664322 12233344455567888888888776  2 33


Q ss_pred             cEEEEeCCeeeccC-HHHHHHHHHH
Q 018060          104 PFFVLNSDVISEYP-FAEMIEFHKA  127 (361)
Q Consensus       104 ~~lv~~~D~~~~~~-l~~~~~~~~~  127 (361)
                      .++++.+|.....+ +..++..+..
T Consensus        80 ~v~~~d~D~~~~~~~~~~~~~~~~~  104 (156)
T cd00761          80 YILFLDADDLLLPDWLERLVAELLA  104 (156)
T ss_pred             EEEEECCCCccCccHHHHHHHHHhc
Confidence            89999999977766 5555444433

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=95.67  E-value=0.024  Score=53.31  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=57.3

Q ss_pred             cCceEEEEe-cceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECC
Q 018060          205 EGKLFAMVL-PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVES  283 (361)
Q Consensus       205 ~~~i~~~~~-~~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~  283 (361)
                      ..++..... ++.+..++|..+|++-...- ..+      .+..........  .....+.+++.| -+|++..++.+|+
T Consensus       226 ~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~-~~l------~~~~~~~~~~~~--~~~~~~~~~~~V-inSil~~~~~vg~  295 (414)
T PF07959_consen  226 GTPLNVVPLPNGKFYHFGTSREYLEHLTSD-SEL------GIMRRKFSHSPA--TTPSDSEASSCV-INSILEGGVSVGP  295 (414)
T ss_pred             hccccccccCCceEEEecCCHHHHHhhccC-ccc------ccceeeeecccc--ccccccCCCeeE-EEeEecCCceECC
Confidence            334444444 47888999987776654211 000      011111111111  112233444444 3888888888888


Q ss_pred             CcEEeceEEccCcEECCCCEEeccEEcCC
Q 018060          284 GVRLSRCTVMRGVRIKKHACISSSIIGWH  312 (361)
Q Consensus       284 ~~~i~~~~i~~~~~i~~~~~i~~~~i~~~  312 (361)
                      ++.|.+|.++.++.||++|.|.++-+...
T Consensus       296 ~svIe~s~l~~~~~IG~~cIisGv~~~~~  324 (414)
T PF07959_consen  296 GSVIEHSHLGGPWSIGSNCIISGVDINSW  324 (414)
T ss_pred             CCEEEeeecCCCCEECCCCEEECCccccc
Confidence            88888888888888888888887655444

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=95.49  E-value=2  Score=39.52  Aligned_cols=130  Identities=23%  Similarity=0.284  Sum_probs=75.2

Q ss_pred             EEEEecCCCcccCCCCCCCCCcccee-CCcchHHHH---HHHHHHc-CCC-EEEEEcccC-hHHHHHHHHHhhhccCcEE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQ---IEALKAV-GVT-EVVLAINYQ-PEVMLNFLKEFEAKLGIKI   75 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl-~g~pli~~~---l~~l~~~-gi~-~i~vv~~~~-~~~~~~~l~~~~~~~~~~i   75 (361)
                      .+=|-+|.|+-|+.   ..||.+.++ .|.+.++-+   ++.|.+. +++ ..++.-+.. .+....++++|... .+++
T Consensus       106 vlKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~-kv~i  181 (498)
T KOG2638|consen  106 VLKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS-KVDI  181 (498)
T ss_pred             EEEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC-ceeE
Confidence            34477999999999   899999999 477766655   5555433 333 445555553 56778888875422 2333


Q ss_pred             EEecC-------------------------CCCCCCchHHHHHH------hhccCCCCCcEEEEeCCeeecc-CHHHHHH
Q 018060           76 ICSQE-------------------------TEPLGTAGPLALAR------DKLIDDTGEPFFVLNSDVISEY-PFAEMIE  123 (361)
Q Consensus        76 ~~~~~-------------------------~~~~g~~~al~~~~------~~~~~~~~~~~lv~~~D~~~~~-~l~~~~~  123 (361)
                      ....|                         ..|.|.++-.....      ..+.+ +.|.++|.+.|.+... ||. +++
T Consensus       182 ~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaq-GkEylFVSNiDNLGAtvDL~-ILn  259 (498)
T KOG2638|consen  182 KTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQ-GKEYLFVSNIDNLGATVDLN-ILN  259 (498)
T ss_pred             EEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhC-CceEEEEeccccccceeeHH-HHH
Confidence            22211                         11334443332221      23443 4458999999996653 554 555


Q ss_pred             HHHHcCCceEEEEEE
Q 018060          124 FHKAHGGEASIMVTK  138 (361)
Q Consensus       124 ~~~~~~~~~~i~~~~  138 (361)
                      .....+.+-.+-++.
T Consensus       260 ~~i~~~~ey~MEvTd  274 (498)
T KOG2638|consen  260 HVINNNIEYLMEVTD  274 (498)
T ss_pred             HHhcCCCceEEEecc
Confidence            555555554444444

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=94.47  E-value=0.65  Score=36.99  Aligned_cols=101  Identities=24%  Similarity=0.259  Sum_probs=65.1

Q ss_pred             ceeCCc-chHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060           26 VEFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (361)
Q Consensus        26 lpl~g~-pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~  102 (361)
                      +|.-|. ..|..+|+.+.+..  ..+++|+-+...+...+.+.++.......+.+.......|.+.+...+.+..  .. 
T Consensus         3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~-   79 (180)
T cd06423           3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KG-   79 (180)
T ss_pred             ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CC-
Confidence            344454 48888899988874  4567776666555566666654332222344444555668888888888776  33 


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060          103 EPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus       103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~  129 (361)
                      +.++++.+|.....+ +.+++..+.+..
T Consensus        80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~~  107 (180)
T cd06423          80 DIVVVLDADTILEPDALKRLVVPFFADP  107 (180)
T ss_pred             CEEEEECCCCCcChHHHHHHHHHhccCC
Confidence            389999999966655 677755555443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=94.38  E-value=0.77  Score=39.64  Aligned_cols=107  Identities=9%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             ceeCCcc-hHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCC
Q 018060           26 VEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD  100 (361)
Q Consensus        26 lpl~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~  100 (361)
                      +|.-|.. .|..+|+++.+...    -+|+|+.....+...+.++++......++.........|.+.++..+.+..  .
T Consensus         7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~   84 (241)
T cd06427           7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--R   84 (241)
T ss_pred             EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--C
Confidence            3444443 77888888877532    246666565556666667665322234555554444457778888888765  3


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHHcCCceEEE
Q 018060          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM  135 (361)
Q Consensus       101 ~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i~  135 (361)
                      + |.++++.+|.....+ +.++++.+.+.+.+..++
T Consensus        85 g-d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~  119 (241)
T cd06427          85 G-EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV  119 (241)
T ss_pred             C-CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence            3 489999999977766 788888876543444433

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=94.25  E-value=0.92  Score=37.68  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=64.6

Q ss_pred             cceeCCcc---hHHHHHHHHHHcC--CCEEEEEcccC-hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060           25 LVEFANKP---MILHQIEALKAVG--VTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (361)
Q Consensus        25 llpl~g~p---li~~~l~~l~~~g--i~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~   98 (361)
                      ++|.-|..   .|..+|+++.+..  ..+++|+-... .+...+.++++..+.++.+  .......|.+.+.-.+.... 
T Consensus         3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~--i~~~~n~G~~~a~N~g~~~a-   79 (201)
T cd04195           3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKV--VPLEKNRGLGKALNEGLKHC-   79 (201)
T ss_pred             EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEE--EEcCccccHHHHHHHHHHhc-
Confidence            35665543   8999999998864  24665554443 5667777766654444333  33333457778777777655 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus        99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~  129 (361)
                       . .+.++++.+|.+...+ ++.+++...++.
T Consensus        80 -~-gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~  109 (201)
T cd04195          80 -T-YDWVARMDTDDISLPDRFEKQLDFIEKNP  109 (201)
T ss_pred             -C-CCEEEEeCCccccCcHHHHHHHHHHHhCC
Confidence             3 3488999999976665 788888775543

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=93.78  E-value=1.4  Score=34.92  Aligned_cols=97  Identities=16%  Similarity=0.177  Sum_probs=64.2

Q ss_pred             ceeCCc-chHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060           26 VEFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (361)
Q Consensus        26 lpl~g~-pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~  102 (361)
                      +|.-|+ .++..+++++.+..  ..+++|+.+...+...+.+.++..    .+.+.......|.+.+...+.+..  .. 
T Consensus         3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~--~~-   75 (166)
T cd04186           3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREA--KG-   75 (166)
T ss_pred             EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhC--CC-
Confidence            344444 58999999998763  457777776665666666665322    233344445568888888888777  33 


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060          103 EPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus       103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~  129 (361)
                      +.++++..|.....+ +..+++.+.+.+
T Consensus        76 ~~i~~~D~D~~~~~~~l~~~~~~~~~~~  103 (166)
T cd04186          76 DYVLLLNPDTVVEPGALLELLDAAEQDP  103 (166)
T ss_pred             CEEEEECCCcEECccHHHHHHHHHHhCC
Confidence            388899999976665 777877655543

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=93.19  E-value=0.95  Score=38.10  Aligned_cols=100  Identities=11%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             chHHHHHHHHHHc------CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcE
Q 018060           32 PMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF  105 (361)
Q Consensus        32 pli~~~l~~l~~~------gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~  105 (361)
                      ..|..+|+.+.+.      ...+++|+-+...+...+.++++....+..+.+.......|.+.++..+....  .+ |.+
T Consensus        10 ~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a--~g-d~i   86 (211)
T cd04188          10 KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAA--RG-DYI   86 (211)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHh--cC-CEE
Confidence            3566667666553      23467766555555566666655433332234444444568888888888877  33 489


Q ss_pred             EEEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060          106 FVLNSDVISEYP-FAEMIEFHKAHGGEASI  134 (361)
Q Consensus       106 lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i  134 (361)
                      +++.+|.....+ +.++++.....+.++++
T Consensus        87 ~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  116 (211)
T cd04188          87 LFADADLATPFEELEKLEEALKTSGYDIAI  116 (211)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence            999999966554 78888775554444433

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]

Probab=93.09  E-value=1.5  Score=36.02  Aligned_cols=105  Identities=19%  Similarity=0.280  Sum_probs=61.8

Q ss_pred             CeEEEEec---CCCcccCCCCCC-CCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEE
Q 018060            1 MKALILVG---GFGTRLRPLTLS-VPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKII   76 (361)
Q Consensus         1 m~avIla~---G~g~rl~~lt~~-~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~   76 (361)
                      |++||+-.   +.=+||.|.-.. .-+-++    .-||..++..+... +.+|.|++....  +..+-.+      .++.
T Consensus         1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde~--~~~~a~~------~~vl   67 (210)
T COG1920           1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDEE--VLVPATK------LEVL   67 (210)
T ss_pred             CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCChH--hhhhccc------ceee
Confidence            78888765   445777774221 111111    24888888888765 688988888632  2111111      1221


Q ss_pred             EecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHH
Q 018060           77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH  125 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~  125 (361)
                        ..  + +.-.++.++.+.+...  +.++++++|+  +...+++++++..
T Consensus        68 --~d--~-dLN~Ai~aa~~~~~~p--~~v~vvmaDLPLl~~~~i~~~~~~~  111 (210)
T COG1920          68 --AD--P-DLNTAINAALDEIPLP--SEVIVVMADLPLLSPEHIERALSAA  111 (210)
T ss_pred             --ec--c-chHHHHHHHHhhCCCC--cceEEEecccccCCHHHHHHHHHhc
Confidence              11  1 2446677777776432  3699999999  4555688887763

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=92.81  E-value=2.2  Score=34.69  Aligned_cols=104  Identities=13%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             eeCCcc-hHHHHHHHHHHc----CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCC
Q 018060           27 EFANKP-MILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT  101 (361)
Q Consensus        27 pl~g~p-li~~~l~~l~~~----gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~  101 (361)
                      |.-+.+ .+..+|+.+.+.    ...+++|+-+...+...+.++++..... .+.+.......|.+.+...+.....  +
T Consensus         4 ~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~--g   80 (185)
T cd04179           4 PAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAAR--G   80 (185)
T ss_pred             cccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhc--C
Confidence            444443 677888888776    2567777766655555666655433322 2233444445688888888887773  3


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060          102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI  134 (361)
Q Consensus       102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i  134 (361)
                       |.++++.+|.....+ ++++++...+.+.++..
T Consensus        81 -d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~  113 (185)
T cd04179          81 -DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVI  113 (185)
T ss_pred             -CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence             489999999866555 78888875555544433

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=92.64  E-value=2.7  Score=36.33  Aligned_cols=103  Identities=16%  Similarity=0.201  Sum_probs=67.7

Q ss_pred             CCCCCC--ccceeCCcc-hHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHH
Q 018060           18 TLSVPK--PLVEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPL   90 (361)
Q Consensus        18 t~~~pK--~llpl~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al   90 (361)
                      ....|+  -++|.-|.. .|..+|+.+.+...    -+++|+.+...+...+.++++... +  +.+.......|.+.++
T Consensus        25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~--v~~i~~~~~~g~~~a~  101 (251)
T cd06439          25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-G--VKLLRFPERRGKAAAL  101 (251)
T ss_pred             CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-c--EEEEEcCCCCChHHHH
Confidence            344454  455665654 78888888876532    257777666656677777665433 3  3333444455778888


Q ss_pred             HHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018060           91 ALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK  126 (361)
Q Consensus        91 ~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~  126 (361)
                      ..+.....  + |.++++.+|.+...+ ++++++...
T Consensus       102 n~gi~~a~--~-d~i~~lD~D~~~~~~~l~~l~~~~~  135 (251)
T cd06439         102 NRALALAT--G-EIVVFTDANALLDPDALRLLVRHFA  135 (251)
T ss_pred             HHHHHHcC--C-CEEEEEccccCcCHHHHHHHHHHhc
Confidence            88887763  3 489999999977665 788887764

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=92.16  E-value=2.1  Score=35.70  Aligned_cols=101  Identities=17%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             ceeCCcc-hHHHHHHHHHHcCC--CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060           26 VEFANKP-MILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (361)
Q Consensus        26 lpl~g~p-li~~~l~~l~~~gi--~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~  102 (361)
                      +|.-|.+ .|..+|+++.+...  -+++|+-+...+...+.++++..+.+..+.+.......|.+.++..+....  . .
T Consensus         4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~-g   80 (214)
T cd04196           4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--D-G   80 (214)
T ss_pred             EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--C-C
Confidence            3444444 78888998877642  356666555445555666665444333444455555567777777776554  3 3


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060          103 EPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus       103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~  129 (361)
                      +.++++..|.....+ +..+++...+..
T Consensus        81 ~~v~~ld~Dd~~~~~~l~~~~~~~~~~~  108 (214)
T cd04196          81 DYVFFCDQDDIWLPDKLERLLKAFLKDD  108 (214)
T ss_pred             CEEEEECCCcccChhHHHHHHHHHhcCC
Confidence            488899989866655 788887744433

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]

Probab=92.00  E-value=0.44  Score=44.61  Aligned_cols=62  Identities=26%  Similarity=0.368  Sum_probs=46.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc----------C-CCEEEEEccc-ChHHHHHHHHH
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV----------G-VTEVVLAINY-QPEVMLNFLKE   66 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~----------g-i~~i~vv~~~-~~~~~~~~l~~   66 (361)
                      .++++|+|.|+|++-   ..||.+.+++   |+.+++...+++...          + --..+|.++. -.+..+++++.
T Consensus        99 a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~  175 (477)
T KOG2388|consen   99 AVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFES  175 (477)
T ss_pred             eEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhh
Confidence            378999999999988   8999999998   667988887765432          2 1244777777 45678888875

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=91.72  E-value=3.8  Score=34.81  Aligned_cols=98  Identities=12%  Similarity=0.162  Sum_probs=63.0

Q ss_pred             ceeCCc--chHHHHHHHHHHcCCC----EEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCC-CchHHHHHHhhcc
Q 018060           26 VEFANK--PMILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLG-TAGPLALARDKLI   98 (361)
Q Consensus        26 lpl~g~--pli~~~l~~l~~~gi~----~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g-~~~al~~~~~~~~   98 (361)
                      +|.-|.  .+++.+|+.+.+....    +++|+-+...+...+.++++.....+.+...  ....| .+.++..+.+.. 
T Consensus         7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~n~~~~~a-   83 (234)
T cd06421           7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTR--PDNRHAKAGNLNNALAHT-   83 (234)
T ss_pred             EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEe--CCCCCCcHHHHHHHHHhC-
Confidence            455554  3788999999886533    6777776666778888877654333333322  22223 355566666655 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHHc
Q 018060           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAH  128 (361)
Q Consensus        99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~  128 (361)
                       .+ |.++++.+|.+...+ +..+++...++
T Consensus        84 -~~-d~i~~lD~D~~~~~~~l~~l~~~~~~~  112 (234)
T cd06421          84 -TG-DFVAILDADHVPTPDFLRRTLGYFLDD  112 (234)
T ss_pred             -CC-CEEEEEccccCcCccHHHHHHHHHhcC
Confidence             33 489999999977766 78888877653

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=91.14  E-value=3.9  Score=33.45  Aligned_cols=98  Identities=15%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             ceeCCc-chHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc--
Q 018060           26 VEFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI--   98 (361)
Q Consensus        26 lpl~g~-pli~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~--   98 (361)
                      +|.-|. ..|..+|+++.+...    .+|+|+.....+...+.++++    +..+.........|.+.++..+.....  
T Consensus         3 Ip~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~a~~~   78 (183)
T cd06438           3 IPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GATVLERHDPERRGKGYALDFGFRHLLNL   78 (183)
T ss_pred             EeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence            455444 478888888877543    356777666656666666553    233333333334467777777776652  


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHH
Q 018060           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKA  127 (361)
Q Consensus        99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~  127 (361)
                      ....|.++++.+|.....+ +..+++.+.+
T Consensus        79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~  108 (183)
T cd06438          79 ADDPDAVVVFDADNLVDPNALEELNARFAA  108 (183)
T ss_pred             CCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence            1233489999999977766 7888877654

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=91.10  E-value=2.6  Score=35.05  Aligned_cols=93  Identities=14%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             chHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060           32 PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN  109 (361)
Q Consensus        32 pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~  109 (361)
                      ..|..+|+.+.+..  ..+++|+-+...+...+.++++....+  +.+.......|.+.++-.+.+.....+.|.++++.
T Consensus        10 ~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld   87 (202)
T cd04185          10 DLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMD   87 (202)
T ss_pred             HHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEeC
Confidence            47888999987763  246777666656667777776544333  33344444556666666665544222344888999


Q ss_pred             CCeeeccC-HHHHHHHHH
Q 018060          110 SDVISEYP-FAEMIEFHK  126 (361)
Q Consensus       110 ~D~~~~~~-l~~~~~~~~  126 (361)
                      .|.....+ ++++++...
T Consensus        88 ~D~~~~~~~l~~l~~~~~  105 (202)
T cd04185          88 DDAIPDPDALEKLLAYAD  105 (202)
T ss_pred             CCCCcChHHHHHHHHHHh
Confidence            99977766 677777765

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=90.51  E-value=4.5  Score=34.09  Aligned_cols=104  Identities=14%  Similarity=0.166  Sum_probs=63.0

Q ss_pred             ceeCCc-chHHHHHHHHHHcC---CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCC
Q 018060           26 VEFANK-PMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT  101 (361)
Q Consensus        26 lpl~g~-pli~~~l~~l~~~g---i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~  101 (361)
                      +|.-|. ..|..+|+.+.+.-   ..+++||-+...+...+.++++..... .+.+.......|.+.++..+.+...  +
T Consensus         3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~--g   79 (224)
T cd06442           3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAAR--G   79 (224)
T ss_pred             EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcC--C
Confidence            344444 36788888887642   346666655544555555555433222 2233334445677888888887763  3


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHHHHcCCceE
Q 018060          102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS  133 (361)
Q Consensus       102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~  133 (361)
                       |.++++.+|.....+ +..+++....++.+++
T Consensus        80 -d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v  111 (224)
T cd06442          80 -DVIVVMDADLSHPPEYIPELLEAQLEGGADLV  111 (224)
T ss_pred             -CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence             488899999866554 7888887555554443

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=90.19  E-value=3.5  Score=35.36  Aligned_cols=95  Identities=15%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060           32 PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV  107 (361)
Q Consensus        32 pli~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv  107 (361)
                      +.+..+|+.+.+...    .+++|+-+...+...+.++++... ...+.+... ...|.+.++..+.+..  . .|.+++
T Consensus        13 ~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~-~~~~~~~a~N~g~~~a--~-~d~v~~   87 (249)
T cd02525          13 KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDN-PKRIQSAGLNIGIRNS--R-GDIIIR   87 (249)
T ss_pred             hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeC-CCCCchHHHHHHHHHh--C-CCEEEE
Confidence            477888998877643    367777666666666676665433 122333333 2346667777777665  2 348899


Q ss_pred             EeCCeeeccC-HHHHHHHHHHcCCc
Q 018060          108 LNSDVISEYP-FAEMIEFHKAHGGE  131 (361)
Q Consensus       108 ~~~D~~~~~~-l~~~~~~~~~~~~~  131 (361)
                      +.+|.....+ ++++++.+.+.+..
T Consensus        88 lD~D~~~~~~~l~~~~~~~~~~~~~  112 (249)
T cd02525          88 VDAHAVYPKDYILELVEALKRTGAD  112 (249)
T ss_pred             ECCCccCCHHHHHHHHHHHhcCCCC
Confidence            9999976655 78888766554443

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=90.01  E-value=4.5  Score=34.50  Aligned_cols=100  Identities=21%  Similarity=0.287  Sum_probs=58.6

Q ss_pred             ceeCCc-c-hHHHHHHHHHHcCC--CEEEEEcccChHH-HHHHHHHhhhccCcEEEEecCCCCCCC-chHHHHHHhhccC
Q 018060           26 VEFANK-P-MILHQIEALKAVGV--TEVVLAINYQPEV-MLNFLKEFEAKLGIKIICSQETEPLGT-AGPLALARDKLID   99 (361)
Q Consensus        26 lpl~g~-p-li~~~l~~l~~~gi--~~i~vv~~~~~~~-~~~~l~~~~~~~~~~i~~~~~~~~~g~-~~al~~~~~~~~~   99 (361)
                      +|.-|. | +|..+|+.+.+...  -+++|+-+...+. ..+.++++..+.+.++.+.......|. ++++-.+.+....
T Consensus         4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~   83 (236)
T cd06435           4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAP   83 (236)
T ss_pred             EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCC
Confidence            455565 3 78999999988753  3666665543322 222333322222233433333333453 6777777776632


Q ss_pred             CCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018060          100 DTGEPFFVLNSDVISEYP-FAEMIEFHK  126 (361)
Q Consensus       100 ~~~~~~lv~~~D~~~~~~-l~~~~~~~~  126 (361)
                      . .|.++++.+|.....+ +.++++...
T Consensus        84 ~-~d~i~~lD~D~~~~~~~l~~l~~~~~  110 (236)
T cd06435          84 D-AEIIAVIDADYQVEPDWLKRLVPIFD  110 (236)
T ss_pred             C-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence            2 3489999999966665 788887764

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=89.92  E-value=4.5  Score=33.13  Aligned_cols=91  Identities=14%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHHcCCC--EEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060           32 PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN  109 (361)
Q Consensus        32 pli~~~l~~l~~~gi~--~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~  109 (361)
                      ..|+.+|+++.+....  +|+|+-+...+...+.++++...    +.+.......|.+.++..+.+..  . .+.++++.
T Consensus        11 ~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a--~-~~~v~~ld   83 (202)
T cd06433          11 ETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALA--T-GDIIGFLN   83 (202)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHc--C-CCEEEEeC
Confidence            4788999999876544  56666444445566666665332    12222334457788887777766  2 34889999


Q ss_pred             CCeeeccC-HHHHHHHHHHcC
Q 018060          110 SDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus       110 ~D~~~~~~-l~~~~~~~~~~~  129 (361)
                      +|.....+ +..++....+.+
T Consensus        84 ~D~~~~~~~~~~~~~~~~~~~  104 (202)
T cd06433          84 SDDTLLPGALLAVVAAFAEHP  104 (202)
T ss_pred             CCcccCchHHHHHHHHHHhCC
Confidence            99955544 777775554443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=89.57  E-value=5.5  Score=32.97  Aligned_cols=97  Identities=11%  Similarity=0.176  Sum_probs=54.0

Q ss_pred             ceeCC-cchHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCc---hHHHHHHhhcc
Q 018060           26 VEFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTA---GPLALARDKLI   98 (361)
Q Consensus        26 lpl~g-~pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~---~al~~~~~~~~   98 (361)
                      +|.-| .+.|...|+++.+..  --+++||.+...+...+.++++.... ...+.+.......|..   .++..+.+.. 
T Consensus         7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a-   85 (196)
T cd02520           7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEA-   85 (196)
T ss_pred             EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhC-
Confidence            34433 346788888887653  34666666665555555555543322 2333333333233432   3343444444 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018060           99 DDTGEPFFVLNSDVISEYP-FAEMIEFH  125 (361)
Q Consensus        99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~  125 (361)
                       . .|.++++.+|.....+ +.++++..
T Consensus        86 -~-~d~i~~~D~D~~~~~~~l~~l~~~~  111 (196)
T cd02520          86 -R-YDILVISDSDISVPPDYLRRMVAPL  111 (196)
T ss_pred             -C-CCEEEEECCCceEChhHHHHHHHHh
Confidence             2 3488999999976655 77777764

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=89.52  E-value=5.8  Score=35.48  Aligned_cols=96  Identities=11%  Similarity=0.116  Sum_probs=59.1

Q ss_pred             chHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHH-hhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060           32 PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKE-FEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF  106 (361)
Q Consensus        32 pli~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~-~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~l  106 (361)
                      ..|..+|+++.+.--    .+|+||-+...+.....+.+ +.......+.+.......|.+.+.-.+....  .+ |.++
T Consensus        12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A--~g-d~i~   88 (299)
T cd02510          12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAA--TG-DVLV   88 (299)
T ss_pred             HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHc--cC-CEEE
Confidence            388888998876531    36777766544444444432 1111112333344444557777777777665  33 4899


Q ss_pred             EEeCCeeeccC-HHHHHHHHHHcCC
Q 018060          107 VLNSDVISEYP-FAEMIEFHKAHGG  130 (361)
Q Consensus       107 v~~~D~~~~~~-l~~~~~~~~~~~~  130 (361)
                      ++.+|.....+ +.++++.+.+.+.
T Consensus        89 fLD~D~~~~~~wL~~ll~~l~~~~~  113 (299)
T cd02510          89 FLDSHCEVNVGWLEPLLARIAENRK  113 (299)
T ss_pred             EEeCCcccCccHHHHHHHHHHhCCC
Confidence            99999966655 8999988876544

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis

Probab=89.42  E-value=0.42  Score=40.53  Aligned_cols=107  Identities=22%  Similarity=0.322  Sum_probs=49.8

Q ss_pred             CeEEEEecCCC---cccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhh-ccCcEEE
Q 018060            1 MKALILVGGFG---TRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-KLGIKII   76 (361)
Q Consensus         1 m~avIla~G~g---~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~-~~~~~i~   76 (361)
                      |++||+.-..+   |||.+.-   +..--.=.-+.|+..+++.+..  ++ ++|++...  .+..    +.. ..++.+.
T Consensus         1 m~~VIPvK~~~~aKSRLs~~L---~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~--~v~~----~a~~~~g~~vl   68 (217)
T PF01983_consen    1 MRAVIPVKPLARAKSRLSPVL---SPEEREALALAMLRDVLAALRA--VD-VVVVSRDP--EVAA----LARARLGAEVL   68 (217)
T ss_dssp             -EEEEE---TT-TTGGGTTTS----HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TT----TTT---SSEEE
T ss_pred             CeEEEEcCCCCccccccCccC---CHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch--hhhh----hhhhccCCeEe
Confidence            88999987655   7776631   1110111124589999998877  66 66666542  1111    111 3366654


Q ss_pred             EecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHH
Q 018060           77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH  125 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~  125 (361)
                      ...   ..|.=.++..+....  . .++++++++|+  +...+++.+++..
T Consensus        69 ~d~---~~gLN~Al~~a~~~~--~-~~~vlvl~aDLPll~~~dl~~~l~~~  113 (217)
T PF01983_consen   69 PDP---GRGLNAALNAALAAA--G-DDPVLVLPADLPLLTPEDLDALLAAA  113 (217)
T ss_dssp             E------S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred             cCC---CCCHHHHHHHHHhcc--C-CCceEEeecCCccCCHHHHHHHHhcc
Confidence            332   346666666663222  2 34899999999  6667788888764

One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=89.21  E-value=4.9  Score=32.65  Aligned_cols=81  Identities=15%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018060           47 TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFH  125 (361)
Q Consensus        47 ~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~  125 (361)
                      .+|+|+-+...+...+.++++..... .+.+.......|.+.++..+.....  + |.++++.+|.....+ ++.+++..
T Consensus        30 ~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g~~~a~--~-d~i~~~D~D~~~~~~~l~~l~~~~  105 (181)
T cd04187          30 YEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLSRNFGQQAALLAGLDHAR--G-DAVITMDADLQDPPELIPEMLAKW  105 (181)
T ss_pred             eEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEecCCCCcHHHHHHHHHhcC--C-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence            46777666655555556665533222 2333333345588888888877663  3 489999999966554 78888763


Q ss_pred             HHcCCce
Q 018060          126 KAHGGEA  132 (361)
Q Consensus       126 ~~~~~~~  132 (361)
                       +++.++
T Consensus       106 -~~~~~~  111 (181)
T cd04187         106 -EEGYDV  111 (181)
T ss_pred             -hCCCcE
Confidence             334443

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=88.78  E-value=6.5  Score=33.43  Aligned_cols=89  Identities=17%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCC
Q 018060           32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD  111 (361)
Q Consensus        32 pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D  111 (361)
                      +.|..+|+.+.+....+++|+.+...+...+.+....+...+.+.  . ....|...++..+....  . .|.++++.+|
T Consensus        14 ~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~--~-~~~~g~~~a~n~g~~~a--~-~d~v~~lD~D   87 (235)
T cd06434          14 DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGIFVI--T-VPHPGKRRALAEGIRHV--T-TDIVVLLDSD   87 (235)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCcEEEE--e-cCCCChHHHHHHHHHHh--C-CCEEEEECCC
Confidence            589999999988766678777777666666665432222222232  2 22346677776666665  2 3489999999


Q ss_pred             eeeccC-HHHHHHHHH
Q 018060          112 VISEYP-FAEMIEFHK  126 (361)
Q Consensus       112 ~~~~~~-l~~~~~~~~  126 (361)
                      .....+ ++.+++.+.
T Consensus        88 ~~~~~~~l~~l~~~~~  103 (235)
T cd06434          88 TVWPPNALPEMLKPFE  103 (235)
T ss_pred             ceeChhHHHHHHHhcc
Confidence            977766 788888776

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>PRK11204 N-glycosyltransferase; Provisional

Probab=88.54  E-value=5.3  Score=37.73  Aligned_cols=101  Identities=19%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             cceeCCc-chHHHHHHHHHHcCC--CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCC
Q 018060           25 LVEFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT  101 (361)
Q Consensus        25 llpl~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~  101 (361)
                      ++|.-|. ..+..+++++.+...  .+++|+-+...+...+.++++..+.. ++.+....+..|-+.++..+.+..  ..
T Consensus        59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a--~~  135 (420)
T PRK11204         59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAA--RS  135 (420)
T ss_pred             EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHc--CC
Confidence            4455555 588999999887642  36676666555556666655433322 233344344457788887777765  33


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060          102 GEPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus       102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~~~  129 (361)
                       |.++++.+|.+...+ +.++++.+.+.+
T Consensus       136 -d~i~~lDaD~~~~~d~L~~l~~~~~~~~  163 (420)
T PRK11204        136 -EYLVCIDGDALLDPDAAAYMVEHFLHNP  163 (420)
T ss_pred             -CEEEEECCCCCCChhHHHHHHHHHHhCC
Confidence             489999999977666 788888876544

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=87.18  E-value=6.6  Score=31.78  Aligned_cols=97  Identities=19%  Similarity=0.217  Sum_probs=57.1

Q ss_pred             ceeCCcc-hHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC-CCCCCchHHHHHHhhccCCC
Q 018060           26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET-EPLGTAGPLALARDKLIDDT  101 (361)
Q Consensus        26 lpl~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~-~~~g~~~al~~~~~~~~~~~  101 (361)
                      +|.-|.+ .++.+|+++.+.-  ..+++|+-+...+...+.++++.......+...... ...+.+.+...+.+..  .+
T Consensus         3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g   80 (182)
T cd06420           3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KG   80 (182)
T ss_pred             EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cC
Confidence            3444443 7889999987752  357777666666666677766544323333323222 2223444555555554  33


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHH
Q 018060          102 GEPFFVLNSDVISEYP-FAEMIEFH  125 (361)
Q Consensus       102 ~~~~lv~~~D~~~~~~-l~~~~~~~  125 (361)
                       +.++++.+|.+...+ +.++++.+
T Consensus        81 -~~i~~lD~D~~~~~~~l~~~~~~~  104 (182)
T cd06420          81 -DYLIFIDGDCIPHPDFIADHIELA  104 (182)
T ss_pred             -CEEEEEcCCcccCHHHHHHHHHHh
Confidence             489999999977665 67777665

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=86.26  E-value=6.1  Score=34.06  Aligned_cols=104  Identities=12%  Similarity=0.159  Sum_probs=61.3

Q ss_pred             eeCCc-chHHHHHHHHHHc----CCCEEEEEcccChHHHHHHHHHhhhccC-cEEEEecCCCCCCCchHHHHHHhhccCC
Q 018060           27 EFANK-PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLIDD  100 (361)
Q Consensus        27 pl~g~-pli~~~l~~l~~~----gi~~i~vv~~~~~~~~~~~l~~~~~~~~-~~i~~~~~~~~~g~~~al~~~~~~~~~~  100 (361)
                      |.-|. ..|..+++.+.+.    .--+|+|+-+...+...+.++++....+ ..+.........|.+.++..+....  .
T Consensus        16 p~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a--~   93 (243)
T PLN02726         16 PTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHA--S   93 (243)
T ss_pred             ccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHc--C
Confidence            33343 4566666666442    1236666655555556666665443322 2343344444457777887777665  3


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHHcCCceE
Q 018060          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS  133 (361)
Q Consensus       101 ~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~  133 (361)
                      + +.++++.+|.....+ +.++++...+.+.+++
T Consensus        94 g-~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v  126 (243)
T PLN02726         94 G-DFVVIMDADLSHHPKYLPSFIKKQRETGADIV  126 (243)
T ss_pred             C-CEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEE
Confidence            3 389999999966554 7888887766555443

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=86.09  E-value=7.9  Score=32.57  Aligned_cols=101  Identities=15%  Similarity=0.194  Sum_probs=57.3

Q ss_pred             ceeCCcc-hHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHH-HhhhccCcEEEEecCC--CCCCCchHHHHHHhhc
Q 018060           26 VEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLK-EFEAKLGIKIICSQET--EPLGTAGPLALARDKL   97 (361)
Q Consensus        26 lpl~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~-~~~~~~~~~i~~~~~~--~~~g~~~al~~~~~~~   97 (361)
                      +|.-|.+ .|..+|+.+.+...    .+|+|+-+...+...+.+. .. ...+..+......  ...|...++..+....
T Consensus         3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~-~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~   81 (229)
T cd04192           3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAA-AKPNFQLKILNNSRVSISGKKNALTTAIKAA   81 (229)
T ss_pred             EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHH-hCCCcceEEeeccCcccchhHHHHHHHHHHh
Confidence            4555544 78899998876632    3566665554444444443 11 1112233333322  2334555555555544


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCC
Q 018060           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG  130 (361)
Q Consensus        98 ~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~  130 (361)
                         ..|.++++.+|.+...+ ++++++.+.+.+.
T Consensus        82 ---~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~  112 (229)
T cd04192          82 ---KGDWIVTTDADCVVPSNWLLTFVAFIQKEQI  112 (229)
T ss_pred             ---cCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence               23489999999977766 7888887665543

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=85.67  E-value=1.8  Score=44.92  Aligned_cols=68  Identities=6%  Similarity=-0.014  Sum_probs=52.4

Q ss_pred             CcEEeceEEccCcEECCCCE-EeccEEcCCCEECCCcEEcCceE-ECCCeEECCceEEcCcEEccCceeec
Q 018060          284 GVRLSRCTVMRGVRIKKHAC-ISSSIIGWHSTVGQWARVENMTI-LGEDVHVCDEIYSNGGVVLPHKEIKS  352 (361)
Q Consensus       284 ~~~i~~~~i~~~~~i~~~~~-i~~~~i~~~~~ig~~~~i~~~~~-ig~~~~v~~~~~i~~~~i~~~~~v~~  352 (361)
                      .+.+.||++..++.++++.. |++|.|+.+..||+++.|.+ +. ..-+..|++++.+....+.....+.+
T Consensus       331 ~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisg-v~~~~~~~~vP~~~ci~~vpl~~~~~v~r  400 (974)
T PRK13412        331 AMFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITG-VPENSWNLDLPEGVCIDVVPVGDRGFVAR  400 (974)
T ss_pred             ceEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEec-ccccccceecCCCcEEEEEEcCCCcEEEE
Confidence            35677999999999999844 88999999999999999987 54 44458888888887655544444433

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=85.56  E-value=7.7  Score=34.26  Aligned_cols=92  Identities=16%  Similarity=0.091  Sum_probs=58.8

Q ss_pred             chHHHHHHHHHHcCCCEEEEEcccC--hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060           32 PMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN  109 (361)
Q Consensus        32 pli~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~  109 (361)
                      ..|..+++.+.+. ..+|+||=+..  .+.+.+.+.+.     -.+.+....+..|.+.+.-.+.+.....+.|.++++.
T Consensus         8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~~-----~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD   81 (281)
T TIGR01556         8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLRG-----QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLD   81 (281)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhccC-----CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEEC
Confidence            4778888888776 45666665552  23444444331     2344444455568888888887765433445899999


Q ss_pred             CCeeeccC-HHHHHHHHHHcC
Q 018060          110 SDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus       110 ~D~~~~~~-l~~~~~~~~~~~  129 (361)
                      .|.....+ ++++++...+.+
T Consensus        82 ~D~~~~~~~l~~l~~~~~~~~  102 (281)
T TIGR01556        82 QDSRPGNAFLAAQWKLLSAEN  102 (281)
T ss_pred             CCCCCCHHHHHHHHHHHHhcC
Confidence            99977655 788887766543

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=84.97  E-value=9.2  Score=36.54  Aligned_cols=101  Identities=17%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             ccceeCCcc-hHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCchHHHHHHhhccC
Q 018060           24 PLVEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLID   99 (361)
Q Consensus        24 ~llpl~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~~al~~~~~~~~~   99 (361)
                      -++|.-|.+ .+..+++++.+..  --+++++.+...+...+.++++..+. ++.+...  ....|-+.++..+....  
T Consensus        79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~--~~n~Gka~AlN~gl~~a--  154 (444)
T PRK14583         79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHL--AHNQGKAIALRMGAAAA--  154 (444)
T ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEe--CCCCCHHHHHHHHHHhC--
Confidence            466776664 6888899887763  23677766655555555555443222 3444332  33346677777776654  


Q ss_pred             CCCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060          100 DTGEPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus       100 ~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~  129 (361)
                      . .|.++++.+|.+.+.+ +.++++.+.+++
T Consensus       155 ~-~d~iv~lDAD~~~~~d~L~~lv~~~~~~~  184 (444)
T PRK14583        155 R-SEYLVCIDGDALLDKNAVPYLVAPLIANP  184 (444)
T ss_pred             C-CCEEEEECCCCCcCHHHHHHHHHHHHhCC
Confidence            2 3489999999977766 788887765544

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=84.80  E-value=10  Score=34.58  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc-CHHHHHHHH
Q 018060           47 TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY-PFAEMIEFH  125 (361)
Q Consensus        47 ~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~-~l~~~~~~~  125 (361)
                      -+++++-+...+...+.++++....+.++.........|.+.++..+.+..  .+ |.++++.+|.-.+. .+.++++..
T Consensus        39 ~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A--~g-d~vv~~DaD~q~~p~~i~~l~~~~  115 (325)
T PRK10714         39 YEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHV--TG-DLIITLDADLQNPPEEIPRLVAKA  115 (325)
T ss_pred             EEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhC--CC-CEEEEECCCCCCCHHHHHHHHHHH
Confidence            366666555545555555554333233444333344557788888888776  33 48999999996554 588888877


Q ss_pred             HHcCCceE
Q 018060          126 KAHGGEAS  133 (361)
Q Consensus       126 ~~~~~~~~  133 (361)
                      .+ +.+++
T Consensus       116 ~~-~~DvV  122 (325)
T PRK10714        116 DE-GYDVV  122 (325)
T ss_pred             Hh-hCCEE
Confidence            53 44533

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=84.69  E-value=9  Score=35.62  Aligned_cols=99  Identities=9%  Similarity=0.146  Sum_probs=56.9

Q ss_pred             cceeCCc-chHHHHHHHHHHcCC--CEEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCC---chHHHHHHhhc
Q 018060           25 LVEFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGT---AGPLALARDKL   97 (361)
Q Consensus        25 llpl~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~---~~al~~~~~~~   97 (361)
                      ++|.-|. +.|..+|+.+.+..-  -+|+++.+...+...+.++++.... +.++.++....+.|.   ..++.++.+..
T Consensus        46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a  125 (373)
T TIGR03472        46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA  125 (373)
T ss_pred             EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence            5666554 689999999987752  4666655544343344444432221 233443333333343   23444443333


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018060           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHK  126 (361)
Q Consensus        98 ~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~  126 (361)
                         ..|.++++.+|.....+ ++++++.+.
T Consensus       126 ---~ge~i~~~DaD~~~~p~~L~~lv~~~~  152 (373)
T TIGR03472       126 ---RHDILVIADSDISVGPDYLRQVVAPLA  152 (373)
T ss_pred             ---cCCEEEEECCCCCcChhHHHHHHHHhc
Confidence               33489999999977766 788887764

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=83.78  E-value=17  Score=34.74  Aligned_cols=100  Identities=14%  Similarity=0.160  Sum_probs=64.1

Q ss_pred             cceeCCc-chHHHHHHHHHHcCC--C--EEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060           25 LVEFANK-PMILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLI   98 (361)
Q Consensus        25 llpl~g~-pli~~~l~~l~~~gi--~--~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~~al~~~~~~~~   98 (361)
                      ++|.-|. ..+..+++++.+...  +  +|+|+-+...+...+.++++.... ++.+....  ...|-+.++-.+.+.. 
T Consensus        54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~--~~~Gka~AlN~gl~~s-  130 (439)
T TIGR03111        54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN--SDQGKAKALNAAIYNS-  130 (439)
T ss_pred             EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeC--CCCCHHHHHHHHHHHc-
Confidence            4455454 588899999887643  2  466665555566666655443322 34444333  2357788888888765 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus        99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~  129 (361)
                       .+ |.++++.+|.+.+.+ ++++++.+.+.+
T Consensus       131 -~g-~~v~~~DaD~~~~~d~L~~l~~~f~~~~  160 (439)
T TIGR03111       131 -IG-KYIIHIDSDGKLHKDAIKNMVTRFENNP  160 (439)
T ss_pred             -cC-CEEEEECCCCCcChHHHHHHHHHHHhCC
Confidence             33 489999999977766 788888876544

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=83.32  E-value=4  Score=29.91  Aligned_cols=16  Identities=19%  Similarity=0.167  Sum_probs=6.8

Q ss_pred             cEECCCCEEeccEEcC
Q 018060          296 VRIKKHACISSSIIGW  311 (361)
Q Consensus       296 ~~i~~~~~i~~~~i~~  311 (361)
                      ..|+.++.+.+.+-.+
T Consensus        37 v~i~~~~~v~G~i~~~   52 (101)
T PF04519_consen   37 VKIGGNGEVKGDIKAD   52 (101)
T ss_pred             EEEcCCCEEEEEEEEe
Confidence            4444444444433333

>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]

Probab=82.82  E-value=9.6  Score=30.18  Aligned_cols=97  Identities=12%  Similarity=0.125  Sum_probs=52.5

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCC-CEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPG-CVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~-~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      +..++.+.+.......-.|..  .+. +.+...+ +.|++..+|...+--+...| ++.+.++....+...|...+.+.+
T Consensus        26 i~~g~~f~G~l~f~~~l~IdG--~~~-G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~G  101 (146)
T COG1664          26 IGAGTTFKGELVFEGPLRIDG--TFE-GDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIG  101 (146)
T ss_pred             EecCCEEEEEEEecceEEEeE--EEE-EEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEee
Confidence            344444444444444444432  332 3333333 67777777765555555555 455555555556666666666654


Q ss_pred             ceEECCCeEECCceEEcCcEEcc
Q 018060          324 MTILGEDVHVCDEIYSNGGVVLP  346 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i~~~~i~~  346 (361)
                       -+=+....+..|+.+.|.....
T Consensus       102 -dI~~~~i~v~~Ga~f~G~~~~~  123 (146)
T COG1664         102 -DITTKEITVEEGAIFEGDCEML  123 (146)
T ss_pred             -eecccEEEEccCCEEEeEEEec
Confidence             5556666677777776544433

>PRK10073 putative glycosyl transferase; Provisional

Probab=82.56  E-value=19  Score=32.76  Aligned_cols=104  Identities=8%  Similarity=0.056  Sum_probs=63.1

Q ss_pred             ceeCCc-chHHHHHHHHHHcCC--CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060           26 VEFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (361)
Q Consensus        26 lpl~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~  102 (361)
                      +|.-|. ..|..+|+++.+...  -+++|+-....+...+.++++..+.. .+.+..+. ..|.+.+.-.+.+..  .+ 
T Consensus        12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~-~i~vi~~~-n~G~~~arN~gl~~a--~g-   86 (328)
T PRK10073         12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYP-HVRLLHQA-NAGVSVARNTGLAVA--TG-   86 (328)
T ss_pred             EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEECC-CCChHHHHHHHHHhC--CC-
Confidence            444444 589999999987743  35666555444455555555433221 23333332 447777766666665  33 


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060          103 EPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI  134 (361)
Q Consensus       103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i  134 (361)
                      +.++++.+|-....+ ++.+++...+.+.++++
T Consensus        87 ~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~  119 (328)
T PRK10073         87 KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ  119 (328)
T ss_pred             CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence            389999999966655 78888876665555443

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=82.39  E-value=4.2  Score=29.79  Aligned_cols=92  Identities=15%  Similarity=0.174  Sum_probs=46.2

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEc-CCCEECCCcEEcC
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG-WHSTVGQWARVEN  323 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~-~~~~ig~~~~i~~  323 (361)
                      +.+++.+.++.....+..+...  +.++........|+.++.|...+-.+.+.|. +. +.+.+.. +...|...+.+.+
T Consensus         5 I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G   80 (101)
T PF04519_consen    5 IGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEG   80 (101)
T ss_pred             ECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEE
Confidence            4555556665555555555333  3233333335566666666544444455552 33 4433333 4455666666664


Q ss_pred             ceEECCCeEECCceEEcC
Q 018060          324 MTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i~~  341 (361)
                       .+-.+...+.+++.+.+
T Consensus        81 -~i~~~~l~v~~ga~i~G   97 (101)
T PF04519_consen   81 -DITAGKLEVEGGASING   97 (101)
T ss_pred             -EEEECEEEEeCCCEEEE
Confidence             44444456666655544

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=82.01  E-value=22  Score=29.22  Aligned_cols=93  Identities=18%  Similarity=0.156  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHcCCC--EEEEEcccC-hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEE
Q 018060           32 PMILHQIEALKAVGVT--EVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL  108 (361)
Q Consensus        32 pli~~~l~~l~~~gi~--~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~  108 (361)
                      ..+..+|+++.+.-..  +++|+-+.. .......++.+... ...+.+.......|.+.+.-.+....  .. |.++++
T Consensus        15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a--~~-d~i~~l   90 (202)
T cd04184          15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELA--TG-EFVALL   90 (202)
T ss_pred             HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhh--cC-CEEEEE
Confidence            6788888888776432  566654443 23344444433221 11233333344457777777777765  22 488899


Q ss_pred             eCCeeeccC-HHHHHHHHHHc
Q 018060          109 NSDVISEYP-FAEMIEFHKAH  128 (361)
Q Consensus       109 ~~D~~~~~~-l~~~~~~~~~~  128 (361)
                      .+|.....+ ++.+++.+.++
T Consensus        91 d~D~~~~~~~l~~~~~~~~~~  111 (202)
T cd04184          91 DHDDELAPHALYEVVKALNEH  111 (202)
T ss_pred             CCCCcCChHHHHHHHHHHHhC
Confidence            999966665 78888887443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]

Probab=81.76  E-value=28  Score=28.76  Aligned_cols=102  Identities=16%  Similarity=0.229  Sum_probs=59.1

Q ss_pred             CcchHHHHHHHHHH-cCCC-EEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060           30 NKPMILHQIEALKA-VGVT-EVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF  106 (361)
Q Consensus        30 g~pli~~~l~~l~~-~gi~-~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~l  106 (361)
                      |.|++-|.+..... .+.+ +++++=....+...+..++..+.. +-++...+.....|.+.|...+.....  ++ .++
T Consensus        17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~--g~-fiv   93 (238)
T KOG2978|consen   17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHAT--GD-FIV   93 (238)
T ss_pred             CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhcc--CC-eEE
Confidence            56777777765544 4554 444443333333333333322211 235555666677899999999988873  32 666


Q ss_pred             EEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060          107 VLNSDVISEYP-FAEMIEFHKAHGGEASI  134 (361)
Q Consensus       107 v~~~D~~~~~~-l~~~~~~~~~~~~~~~i  134 (361)
                      ++.+|+--+.. +.++++..++.+.+.+.
T Consensus        94 iMDaDlsHhPk~ipe~i~lq~~~~~div~  122 (238)
T KOG2978|consen   94 IMDADLSHHPKFIPEFIRLQKEGNYDIVL  122 (238)
T ss_pred             EEeCccCCCchhHHHHHHHhhccCcceee
Confidence            77777633332 68888877666555443

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=81.52  E-value=18  Score=33.83  Aligned_cols=108  Identities=12%  Similarity=0.128  Sum_probs=63.4

Q ss_pred             cceeCC-cchHHHHHHHHHHcCC---CEEEEEcccChHHHHHHHHHhhhccC--cEEEEecCC-CC---CCCchHHHHHH
Q 018060           25 LVEFAN-KPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEAKLG--IKIICSQET-EP---LGTAGPLALAR   94 (361)
Q Consensus        25 llpl~g-~pli~~~l~~l~~~gi---~~i~vv~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~-~~---~g~~~al~~~~   94 (361)
                      .+|.-| ...|..+|+.+.+...   .+|+|+-+...+...+.++++.....  ..+...... .+   .|-..++.++.
T Consensus        45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~  124 (384)
T TIGR03469        45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI  124 (384)
T ss_pred             EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence            344444 4689999999987642   36777766655555555555432211  123222221 12   24445666666


Q ss_pred             hhccCCC--CCcEEEEeCCeeeccC-HHHHHHHHHHcCCce
Q 018060           95 DKLIDDT--GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEA  132 (361)
Q Consensus        95 ~~~~~~~--~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~  132 (361)
                      +......  .|.++++.+|...+.+ +.++++...+++..+
T Consensus       125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~  165 (384)
T TIGR03469       125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL  165 (384)
T ss_pred             HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence            6553111  3489999999976665 788988877665443

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=80.10  E-value=21  Score=30.29  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCC
Q 018060           32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD  111 (361)
Q Consensus        32 pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D  111 (361)
                      ..|..+|+++.+. ..+++|+=+...+......+.  ..  ..+.+...+...|-+.+.-.+.+.....+.|.++++.+|
T Consensus        11 ~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~--~~--~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D   85 (237)
T cd02526          11 SKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL--NS--EKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQD   85 (237)
T ss_pred             HHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc--cC--CcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCC
Confidence            6888999998877 566666655433333333221  11  223333334445777777777776642233489999999


Q ss_pred             eeeccC-HHHHH
Q 018060          112 VISEYP-FAEMI  122 (361)
Q Consensus       112 ~~~~~~-l~~~~  122 (361)
                      .....+ +++++
T Consensus        86 ~~~~~~~l~~l~   97 (237)
T cd02526          86 SVPPPDMVEKLL   97 (237)
T ss_pred             CCcCHhHHHHHH
Confidence            977665 67774

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
1tzf_A	259	X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph		3e-24
2ggo_A	401	Crystal Structure Of Glucose-1-Phosphate Thymidylyl		6e-23
1lvw_A	295	Crystal Structure Of Glucose-1-phosphate Thymidylyl		5e-14
1jyl_A	254	Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt		3e-13
1jyk_A	254	Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt		4e-13
4arw_A	302	Pseudomonas Aeruginosa Rmla In Complex With Alloste		3e-12
1mp3_A	292	L89t Variant Of S. Enterica Rmla Length = 292		3e-12
4b2x_A	303	Pseudomonas Aeruginosa Rmla In Complex With Alloste		3e-12
1fxo_A	293	The Structural Basis Of The Catalytic Mechanism And		3e-12
3hl3_A	269	2.76 Angstrom Crystal Structure Of A Putative Gluco		4e-12
1g23_A	293	The Structural Basis Of The Catalytic Mechanism And		9e-12
1mc3_A	296	Crystal Structure Of Rffh Length = 296		1e-11
3pkq_A	292	Q83d Variant Of S. Enterica Rmla With Dgtp Length =		1e-11
3pkp_A	292	Q83s Variant Of S. Enterica Rmla With Datp Length =		2e-11
2qkx_A	391	N-Acetyl Glucosamine 1-Phosphate Uridyltransferase		2e-11
1iim_A	292	Thymidylyltransferase Complexed With Ttp Length = 2		3e-11
1h5s_A	293	Thymidylyltransferase Complexed With Tmp Length = 2		3e-11
3spt_A	501	Crystal Structure Of Glmu From Mycobacterium Tuberc		3e-11
3d8v_A	495	Crystal Structure Of Glmu From Mycobacterium Tuberc		3e-11
3foq_A	503	Crystal Structure Of N-Acetylglucosamine-1-Phosphat		4e-11
1h5t_A	293	Thymidylyltransferase Complexed With Thymidylyldiph		5e-11
1mp5_A	292	Y177f Variant Of S. Enterica Rmla Length = 292		5e-11
1h5s_D	293	Thymidylyltransferase Complexed With Tmp Length = 2		7e-11
1h5r_B	293	Thymidylyltransferase Complexed With Thimidine And		8e-11
1mp4_A	292	W224h Variant Of S. Enterica Rmla Length = 292		4e-10
3fww_A	456	The Crystal Structure Of The Bifunctional N-Acetylg		4e-08
4fce_A	459	Crystal Structure Of Yersinia Pestis Glmu In Comlex		1e-07
1hv9_A	456	Structure Of E. Coli Glmu: Analysis Of Pyrophosphor		2e-07
1fwy_A	331	Crystal Structure Of N-Acetylglucosamine 1-Phosphat		2e-07
2e3d_A	302	Crystal Structure Of E. Coli Glucose-1-Phosphate Ur		3e-07
2ux8_A	297	Crystal Structure Of Sphingomonas Elodea Atcc 31461		4e-06
2v0h_A	456	Characterization Of Substrate Binding And Catalysis		6e-06
4aaw_A	459	S.Pneumoniae Glmu In Complex With An Antibacterial		1e-05
1hm9_A	468	Crystal Structure Of S.Pneumoniae N-Acetylglucosami		3e-05
1g95_A	459	Crystal Structure Of S.Pneumoniae Glmu, Apo Form Le		3e-05
3brk_X	420	Crystal Structure Of Adp-Glucose Pyrophosphorylase		1e-04
3juj_A	281	The Crystal Structure Of Apo- Udp-Glucose Pyrophosp		2e-04
2pa4_A	323	Crystal Structure Of Udp-Glucose Pyrophosphorylase		5e-04

>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 29/250 (11%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+ 
Sbjct: 4   KAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 62  NFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDT 101
            +   +   +        E          EP             T G L    + + DD 
Sbjct: 64  EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD- 122
Query: 102 GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFV 161
            E F     D +++      I+FHKAHG +A++  T    P ++G + ++   G+V  F 
Sbjct: 123 -EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGALDIQ--AGQVRSFQ 177
Query: 162 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 221
           EKPK   G  IN G ++LNP+V+D I+   T+ E+E    +A +G+L A   PGFW  + 
Sbjct: 178 EKPKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMD 236
Query: 222 QPRD--YITG 229
             RD  Y+ G
Sbjct: 237 TLRDKVYLEG 246

>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 161/360 (44%), Gaps = 46/360 (12%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA IL  G G RL P+T + PK  V   +KP+I +QIE L+  G+ ++ + ++ + +  
Sbjct: 1   MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK-- 58
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPF 118
               + FE KL    I +Q+ +  GT   +  A+  D+ +   G+ FF       +E   
Sbjct: 59  ----EYFEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFS------NEKEI 108
Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 178
             +I        E +I+  KV  P  YGV+V+ ++   + K +EKP++   N INAGIY 
Sbjct: 109 CNIITLK-----ENAIIGVKVSNPKDYGVLVL-DNQNNLSKIIEKPEIPPSNLINAGIYK 162
Query: 179 LNPAV---LDRIELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYI-TGXX 231
           LN  +   LD+I +     E E+   I L   + ++  +   G+WMDIG+P + I     
Sbjct: 163 LNSDIFTYLDKISISERG-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKW 221
Query: 232 XXXXXXXXXXXXXXATGANIVGNVLVHESAQ------------IGEGCLIGPDVAVGPGC 279
                              I G V++ E A+            IG+G  IGP+  + P  
Sbjct: 222 ALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYT 281
Query: 280 V------VESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
           +      + + V +    +M G +I   + +  S+I      G    + N+    ++V V
Sbjct: 282 ILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKV 341

>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK ++L GG GTRL P+T +V K L+   +KPMI + +  L   G+ ++++    +   +
Sbjct: 4   MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    ++ G++     + EP G A    + +D + D   +   VL  +V   + F+E
Sbjct: 64  YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSE 121
Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           ++    +    A I    V +P  +GVV   +S G+V    EKP     N +  G+Y  +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEF-DSEGRVISIEEKPSRPKSNYVVPGLYFYD 180
Query: 181 PAVL---------DRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 221
             V+         DR EL  TS+ +E      L  +L    +   W+D G
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMA--WLDTG 228

>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+IL  G GTRLRPLT + PK LV+   KP+I +QIE LK  G+ ++++ + Y  E  
Sbjct: 26  VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE-Q 84
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
            ++LKE   K G++++ + +         L L +++L +      +V+++D    Y F  
Sbjct: 85  FDYLKE---KYGVRLVFNDKYADYNNFYSLYLVKEELANS-----YVIDAD---NYLFKN 133
Query: 121 MI 122
           M 
Sbjct: 134 MF 135

>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+IL  G GTRLRPLT + PK LV+   KP+I +QIE LK  G+ ++++ + Y  E  
Sbjct: 26  VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE-Q 84
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL 97
            ++LKE   K G++++ + +         L L +++L
Sbjct: 85  FDYLKE---KYGVRLVFNDKYADYNNFYSLYLVKEEL 118

>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 22/233 (9%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E+++    Q     
Sbjct: 13  KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    +  G+ +  + +  P G A    +    + +D      VL  ++   + F E+
Sbjct: 73  QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 130
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  + 
Sbjct: 131 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 189
Query: 182 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 221
            V+D         R EL  T + +    +    + + G+ +A      W+D G
Sbjct: 190 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 236

>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V + L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P GTA    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGTAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 221
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTG 228

>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 22/233 (9%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E+++    Q     
Sbjct: 14  KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    +  G+ +  + +  P G A    +    + +D      VL  ++   + F E+
Sbjct: 74  QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 131
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  + 
Sbjct: 132 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 190
Query: 182 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 221
            V+D         R EL  T + +    +    + + G+ +A      W+D G
Sbjct: 191 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 237

>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 22/233 (9%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E+++    Q     
Sbjct: 4   KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    +  G+ +  + +  P G A    +    + +D      VL  ++   + F E+
Sbjct: 64  QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  + 
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 182 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 221
            V+D         R EL  T + +    +    + + G+ +A      W+D G
Sbjct: 181 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 227

>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 16/229 (6%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EV 59
           MK +IL GG G+RL P+T    K L+     PMI H +  LK   +T++++    +    
Sbjct: 25  MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 60  MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YP 117
           +++FL   + + G+      + +  G A  L L  D + +D      +L  ++ S+   P
Sbjct: 85  VVSFLGSGQ-EFGVSFTYRVQDKAGGIAQALGLCEDFVGND--RMVVILGDNIFSDDIRP 141
Query: 118 FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 177
           + E  EF     G A +++  VD+P ++GV  ++    K+ +  EKPK    +    GIY
Sbjct: 142 YVE--EFTNQKEG-AKVLLQSVDDPERFGVANIQNR--KIIEIEEKPKEPKSSYAVTGIY 196
Query: 178 LLNPAVLDRI-ELRPTSIEK----EVFPKIALEGKLFAMVLPGFWMDIG 221
           L +  V   I EL+P++  +    ++       G L    + G+W D G
Sbjct: 197 LYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAG 245

>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 22/233 (9%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P TL++ K L+   +KP I + +  L   G+ E+++    Q     
Sbjct: 4   KGIILAGGSGTRLHPATLAISKQLLPVYDKPXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    +  G+ +  + +  P G A    +    + +D      VL  ++   + F E+
Sbjct: 64  QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  + 
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 182 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 221
            V+D         R EL  T + +    +    + + G+ +A      W+D G
Sbjct: 181 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIXGRGYA------WLDTG 227

>pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 24/234 (10%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T  V K L+   +KP I + +  L   G+ E+++    + +   
Sbjct: 5   KGIILAGGSGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGYF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-FVLNSDVISEYPFAE 120
             L    ++ GI++  +++  P G A    +    L    GEP   VL  ++     F+ 
Sbjct: 65  QRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFL---NGEPSCLVLGDNIFFGQGFSP 121
Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
            +    A    A++   +V +P ++GVV  +++   +    EKPK    N    G+Y  +
Sbjct: 122 KLRHVAARTEGATVFGYQVXDPERFGVVEFDDNFRAI-SLEEKPKQPKSNWAVTGLYFYD 180
Query: 181 PAVL---------DRIELRPTSIEKEVFP----KIALEGKLFAMVLPGFWMDIG 221
             V+         +R EL  TSI +         + L G+ FA      W+D G
Sbjct: 181 SKVVEYAKQVKPSERGELEITSINQXYLEAGNLTVELLGRGFA------WLDTG 228

>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 111/233 (47%), Gaps = 10/233 (4%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  ++  G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 227
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234

>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +       P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  ++  G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 227
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234

>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From Mycobacterium Tuberculosis Complex With N-Acetyl Glucosamine 1-Phosphate Length = 391

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           L+L  G GTR+R  T   PK L   A + M+ H + A+  +    +++ + +  + +   
Sbjct: 12  LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 68
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
           + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A++
Sbjct: 69  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 128
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 178
           I  H+A     +++ T +D+P  YG ++     E    VE+    P      ++NAG+Y 
Sbjct: 129 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 188
Query: 179 LNPAVLDRI--ELRPTSIEKEVF 199
            + A L      L   + ++E++
Sbjct: 189 FDIAALRSALSRLSSNNAQQELY 211

>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V + L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  ++  G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 221
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTG 228

>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 10/227 (4%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL-N 180
           +E        A++    V++P +YGVV  +++ G      EKP     N    G+Y   N
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 181 PAVLDRIELRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 221
             VL    L+P++   +E     +I LE    ++ L G    W+D G
Sbjct: 182 DVVLMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228

>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           L+L  G GTR+R  T   PK L   A + M+ H + A+  +    +++ + +  + +   
Sbjct: 16  LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 72
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
           + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A++
Sbjct: 73  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 132
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 178
           I  H+A     +++ T +D+P  YG ++     E    VE+    P      ++NAG+Y 
Sbjct: 133 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 192
Query: 179 LNPAVLDRI--ELRPTSIEKEVF 199
            + A L      L   + ++E++
Sbjct: 193 FDIAALRSALSRLSSNNAQQELY 215

>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           L+L  G GTR+R  T   PK L   A + M+ H + A+  +    +++ + +  + +   
Sbjct: 10  LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 66
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
           + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A++
Sbjct: 67  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 126
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 178
           I  H+A     +++ T +D+P  YG ++     E    VE+    P      ++NAG+Y 
Sbjct: 127 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 186
Query: 179 LNPAVLDRI--ELRPTSIEKEVF 199
            + A L      L   + ++E++
Sbjct: 187 FDIAALRSALSRLSSNNAQQELY 209

>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           L+L  G GTR+R  T   PK L   A + M+ H + A+  +    +++ + +  + +   
Sbjct: 18  LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 74
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
           + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A++
Sbjct: 75  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 134
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 178
           I  H+A     +++ T +D+P  YG ++     E    VE+    P      ++NAG+Y 
Sbjct: 135 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 194
Query: 179 LNPAVLDRI--ELRPTSIEKEVF 199
            + A L      L   + ++E++
Sbjct: 195 FDIAALRSALSRLSSNNAQQELY 217

>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 221
            V+   + L+P++   +E     +I LE G+L  AM+  G+ W+D G
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTG 228

>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 10/233 (4%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V + L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  +++ G      EKP     N    G++  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLFFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 227
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234

>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 12/228 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL-IDDTGEPFFVLNSDVISEYPFAE 120
             L    ++ G+ +    +  P G A    +  + +  DD      VL  ++   +   +
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCA---LVLGDNIFYGHDLPK 121
Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           ++E        A++    V++P +YGVV  +++ G      EKP     N    G+Y  +
Sbjct: 122 LMEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYD 180
Query: 181 PAVLDRIE-LRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 221
             V+   + L+P++   +E     +I LE    ++ L G    W+D G
Sbjct: 181 NDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228

>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 10/227 (4%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 221
            V+   + L+P++   +E     +I LE    ++ L G    W+D G
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228

>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 4/193 (2%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V + L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
           +E        A++    V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS 193
           +V++  + L+P++
Sbjct: 182 SVVEMAKNLKPSA 194

>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional N-Acetylglucosamine-1- Phosphate UridyltransferaseGLUCOSAMINE-1-Phosphate Acetyltransferase From Yersinia Pestis Co92 Length = 456

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 137/360 (38%), Gaps = 48/360 (13%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A KPM+ H I+A   +G   V L   +  E  
Sbjct: 6   MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGE-- 60
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              LK+  A   +  +   + E LGT   +  A     DD  E   +L  DV  IS    
Sbjct: 61  --LLKKTLADPSLNWVL--QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 114
Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINA 174
             ++   K  GG   ++  K+D PS YG +V E   G V   VE           N+IN 
Sbjct: 115 QRLLAA-KPEGG-IGLLTVKLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINT 170
Query: 175 GIYLLNPAVLDR----IELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYI 227
           GI + N   L R    ++      E  +   IAL   +GK  A V P    ++    + +
Sbjct: 171 GILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRL 230
Query: 228 TGXXXXXXXXXXXXXXXXATGANIV-------------GNVLVHESAQIGEGCLI-GPDV 273
                               G  ++             G  +  ++  I EG +I G  V
Sbjct: 231 QLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRV 290
Query: 274 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
            +G GCV      L  C +     I  +  +  + +  + TVG +AR+     L E  HV
Sbjct: 291 RIGTGCV------LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 344

>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With Alpha-D- Glucosamine 1-Phosphate (Gp1) Length = 459

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 136/357 (38%), Gaps = 48/357 (13%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           +IL  G GTR+      +PK L   A KPM+ H I+A   +G   V L   +  E     
Sbjct: 12  VILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGE----L 64
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEM 121
           LK+  A   +  +   + E LGT   +  A     DD  E   +L  DV  IS      +
Sbjct: 65  LKKTLADPSLNWVL--QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRL 120
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINAGIY 177
           +   K  GG   ++  K+D PS YG +V E   G V   VE           N+IN GI 
Sbjct: 121 LAA-KPEGG-IGLLTVKLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINTGIL 176
Query: 178 LLNPAVLDR----IELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYITGX 230
           + N   L R    ++      E  +   IAL   +GK  A V P    ++    + +   
Sbjct: 177 VANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLS 236
Query: 231 XXXXXXXXXXXXXXXATGANIV-------------GNVLVHESAQIGEGCLI-GPDVAVG 276
                            G  ++             G  +  ++  I EG +I G  V +G
Sbjct: 237 ALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIG 296
Query: 277 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
            GCV      L  C +     I  +  +  + +  + TVG +AR+     L E  HV
Sbjct: 297 TGCV------LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 347

>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase And Acetyltransferase Active Sites Length = 456

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 33/198 (16%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A K M+ H I+A   +G   V L   +  +++
Sbjct: 6   MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 62
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              LK+      +      + E LGT   +  A          PFF  + D++  Y    
Sbjct: 63  KQALKDDNLNWVL------QAEQLGTGHAMQQA---------APFFADDEDILMLYGDVP 107
Query: 121 MIEFH--------KAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK- 171
           +I           K  GG   ++  K+D+P+ YG +  E   GKV   VE        + 
Sbjct: 108 LISVETLQRLRDAKPQGG-IGLLTVKLDDPTGYGRITRE--NGKVTGIVEHKDATDEQRQ 164
Query: 172 ---INAGIYLLNPAVLDR 186
              IN GI + N A + R
Sbjct: 165 IQEINTGILIANGADMKR 182

>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate Uridyltransferase Bound To Udp-Glcnac Length = 331

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 33/198 (16%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A K M+ H I+A   +G   V L   +  +++
Sbjct: 6   MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 62
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              LK+      +      + E LGT   +  A          PFF  + D++  Y    
Sbjct: 63  KQALKDDNLNWVL------QAEQLGTGHAMQQA---------APFFADDEDILMLYGDVP 107
Query: 121 MIEFH--------KAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK- 171
           +I           K  GG   ++  K+D+P+ YG +  E   GKV   VE        + 
Sbjct: 108 LISVETLQRLRDAKPQGG-IGLLTVKLDDPTGYGRITRE--NGKVTGIVEHKDATDEQRQ 164
Query: 172 ---INAGIYLLNPAVLDR 186
              IN GI + N A + R
Sbjct: 165 IQEINTGILIANGADMKR 182

>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate Uridylyltransferase Length = 302

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 105/257 (40%), Gaps = 55/257 (21%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+I V G GTR+ P T ++PK ++   +KP+I + +    A G+TE+VL  +     + 
Sbjct: 10  KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 62  NFLK---EFEAKLGIKI----------ICSQETEPLGTAGPLA-------LARDKLIDDT 101
           N      E EA L  ++          IC      +     LA       L    ++ D 
Sbjct: 70  NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD- 128
Query: 102 GEPFFVLNSDVI--------SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME-- 151
            EP  V+  DVI        S+   AEMI       G + IMV  V + + YGVV  +  
Sbjct: 129 -EPVAVILPDVILDEYESDLSQDNLAEMIRRFD-ETGHSQIMVEPVADVTAYGVVDCKGV 186
Query: 152 -----ESTGKVEKFVEKPKLFVG--NKINAGIYLLN-----------PAVLDRIELRPT- 192
                ES   V   VEKPK  V   N    G Y+L+           P   D I+L    
Sbjct: 187 ELAPGESVPMV-GVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAI 245
Query: 193 --SIEKEVFPKIALEGK 207
              IEKE      ++GK
Sbjct: 246 DMLIEKETVEAYHMKGK 262

>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461 Glucose- 1-phosphate Uridylyltransferase In Complex With Glucose- 1-phosphate. Length = 297

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM- 60
           KA+  V G GTR  P T ++PK ++   ++P+I + ++     G+ +++         + 
Sbjct: 16  KAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALE 75
Query: 61  --LNFLKEFEAKLGIK----------------IICSQETEPLGTAGPLALARDKLIDDTG 102
              +   E EA +  +                I   ++ EP+G    +  ARD + D   
Sbjct: 76  DHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGD--- 132
Query: 103 EPFFV-LNSDVISEYP--FAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTG-- 155
           EPF V L  D +   P    +M++ +   GG   I   +V  D+  +YG++      G  
Sbjct: 133 EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGGNL-ICAEEVPDDQTHRYGIITPGTQDGVL 191
Query: 156 -KVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIE 188
            +V+  VEKP       N    G Y+L P V+  +E
Sbjct: 192 TEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILE 227

>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The Potential Antibacterial Target N-Acetylglucosamine-1- Phosphate Uridyltransferase (Glmu) Length = 456

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 44/358 (12%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           + A+IL  G GTR+      +PK L   A KPM+ H I+    +G   + L   +  ++M
Sbjct: 6   LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPF 118
              L   +    +      +TE LGTA  +  A     D+  E   VL  D  +I++   
Sbjct: 63  RTHLANEQVNWVL------QTEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114
Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGN----KINA 174
            ++IE    +G   +++   +D P+ YG ++ E   G V   VE+           ++N 
Sbjct: 115 EKLIEAKPENG--IALLTVNLDNPTGYGRIIRE--NGNVVAIVEQKDANAEQLNIKEVNT 170
Query: 175 GIYLLNPAV----LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGX 230
           G+ + + A     L R+       E  +   IAL  +    V+     D+ +    + G 
Sbjct: 171 GVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVME----VEGA 226
Query: 231 XXXXXXXXXXXXXXXATGAN-IVGNVLVHESAQIG-EGCL-IGPDVAVGPGCVVESGVRL 287
                             +  ++  V++++ A+    G L  G DV +    ++E  V+L
Sbjct: 227 NNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKL 286
Query: 288 -SRCTVMRG-----------VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
             R  +  G           V IK ++ +  SI+G  + +G ++R+     L  + HV
Sbjct: 287 GDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHV 344

>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial Inhibitor Length = 459

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 137/354 (38%), Gaps = 34/354 (9%)
Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L + A   M+ H   ++ A+   + V  + ++ E++  
Sbjct: 5   AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 61
Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEM 121
            L E       +     ++E LGT   + +    L   +G    +  ++ +I+      +
Sbjct: 62  VLAE-------QTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 114
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIY 177
           I+FH  H   A+I+  + D P  YG +V  ++  +V + VE+       K    IN G Y
Sbjct: 115 IDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTY 173
Query: 178 LLNP----AVLDRIELRPTSIEKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITG 229
           + +       L  I       E  +   I +      K+ A  L  F   +G   D +  
Sbjct: 174 VFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLG-VNDRVAL 232
Query: 230 XXXXXXXXXXXXXXXXATGANIVG--------NVLVHESAQIGEGCLIGPDVAVGPGCVV 281
                             G + V         +V +    QI    ++     +G   V+
Sbjct: 233 ATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVL 292
Query: 282 ESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 335
            +G  +   T+  G  I  ++ I  S +    TVG +A +   + LG  VH+ +
Sbjct: 293 TNGTYVVDSTIGAGAVI-TNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGN 345

>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu, Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine Length = 468

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 137/354 (38%), Gaps = 34/354 (9%)
Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L + A   M+ H   ++ A+   + V  + ++ E++  
Sbjct: 14  AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV-- 68
Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEM 121
                E  L  +     ++E LGT   + +    L   +G    +  ++ +I+      +
Sbjct: 69  -----EEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 123
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIY 177
           I+FH  H   A+I+  + D P  YG +V  ++  +V + VE+       K    IN G Y
Sbjct: 124 IDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTY 182
Query: 178 LLNP----AVLDRIELRPTSIEKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITG 229
           + +       L  I       E  +   I +      K+ A  L  F   +G   D +  
Sbjct: 183 VFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLG-VNDRVAL 241
Query: 230 XXXXXXXXXXXXXXXXATGANIVG--------NVLVHESAQIGEGCLIGPDVAVGPGCVV 281
                             G + V         +V +    QI    ++     +G   V+
Sbjct: 242 ATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVL 301
Query: 282 ESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 335
            +G  +   T+  G  I  ++ I  S +    TVG +A +   + LG  VH+ +
Sbjct: 302 TNGTYVVDSTIGAGAVI-TNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGN 354

>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form Length = 459

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L + A   M+ H   ++ A+   + V  + ++ E++  
Sbjct: 5   AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV-- 59
Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEM 121
                E  L  +     ++E LGT   + +    L   +G    +  ++ +I+      +
Sbjct: 60  -----EEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 114
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIY 177
           I+FH  H   A+I+  + D P  YG +V  ++  +V + VE+       K    IN G Y
Sbjct: 115 IDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTY 173
Query: 178 LLN 180
           + +
Sbjct: 174 VFD 176

>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 141/367 (38%), Gaps = 47/367 (12%)
Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILH-QIEALKAVGVTEVVLAINYQPEVML 61
           A +L GG G+RL+ LT    KP V F  K  I+   +      G+  + +A  Y+   ++
Sbjct: 15  AYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLI 74
Query: 62  NFLK---EF---EAKLGIKII-CSQ---ETEPL-GTAGPLALARDKLIDDTGEPFFVLNS 110
             L+   +F   E      I+  SQ   ET+   GTA  +    D +     E   +L  
Sbjct: 75  RHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYXVILAG 134
Query: 111 DVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFVEKPKL-- 166
           D I +  +   ++ H   G + +I   +V   E + +GV  + E   ++  F+EKP    
Sbjct: 135 DHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKD-EIIDFIEKPADPP 193
Query: 167 -FVGNK----INAGIYLLNPAVLD----RIELRPTSIE---KEVFPKIALEGKLFAMVLP 214
              GN+     + GIY+ +   L     R    PTS     K++ P I   GK  A    
Sbjct: 194 GIPGNEGFALASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFA 253
Query: 215 G-----------FWMDIGQPRDYITGXXXXXXXXXXXXXXXXA----TGANIVGNVLVHE 259
                       +W D+G    Y                   +    T A I        
Sbjct: 254 DSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVH 313
Query: 260 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 319
             +   G  +     V   C++ SG  L+R  +  GVR   ++ + ++++     +G+ A
Sbjct: 314 DDEDRRGSAVSS--VVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHA 370
Query: 320 RVENMTI 326
           ++ N+ I
Sbjct: 371 QLSNVVI 377

>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose Pyrophosphorylase Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 47/266 (17%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVT-------------E 48
           K L    G+GTR  P+T ++PK ++   +KP+I + +E     G               E
Sbjct: 4   KCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLE 63
Query: 49  VVLAINYQPEVMLNFLKEFEAKLGIKIICSQ------ETEPLGTAGPLALARDKLIDDTG 102
                +Y+ E  +    +  A   I+ I  +        + +   G   L  + LI +  
Sbjct: 64  DYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGN-- 121
Query: 103 EPFFVLNSD---VISEYP--FAEMIE-FHKAHGGEASIMVTKVDEPSKYGVVV---MEES 153
           EPF V+ +D   +  ++P    +M   + K      +I    ++E SKYGV+    +EE 
Sbjct: 122 EPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEEG 181
Query: 154 TGKVEKFVEKPKLFVGNKINA-------GIYLLNPAVLDRI-ELRPTSIEK----EVFPK 201
             +++  VEKP     N+ +A       G Y+L P + + + E +P    +    +    
Sbjct: 182 VYEIKDMVEKP-----NQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRT 236
Query: 202 IALEGKLFAMVLPGFWMDIGQPRDYI 227
            A   ++ A    G   D G    YI
Sbjct: 237 QAKRKRIIAYQFKGKRYDCGSVEGYI 262

>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From Corynebacteria Glutamicum In Complex With Magnesium And Udp-Glucose Length = 323

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 33/211 (15%)
Query: 8   GGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFL 64
            G GTR  P T +VPK L+   + P I  ++ A +A  +    LAI   P    V+ +F 
Sbjct: 20  AGLGTRFLPATKTVPKELLPVVDTPGI--ELIAAEAAELGATRLAIITAPNKAGVLAHFE 77
Query: 65  KEFE-------------------AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF 105
           +  E                   A   IK +   + +PLG    + LA   L DD     
Sbjct: 78  RSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVA 137
Query: 106 FVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP--SKYGVVVMEEST-----GKVE 158
            +L  D++      E +   +A  G + +   +V E   SKYG+  +E  T      KV+
Sbjct: 138 VMLPDDLVLPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVK 197
Query: 159 KFVEKPKL-FVGNKINA-GIYLLNPAVLDRI 187
             VEKP +    +++ A G YLL+  + D +
Sbjct: 198 GMVEKPAIEDAPSRLAATGRYLLDRKIFDAL 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	3e-71
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	4e-70
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	8e-66
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	1e-52
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	2e-42
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	2e-25
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	2e-20
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	2e-20
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	7e-08
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	8e-18
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	7e-08
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	1e-17
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	3e-04
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	5e-16
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	3e-09
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	1e-14
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	5e-14
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	7e-14
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	8e-04
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	4e-13
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	6e-12
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	2e-10
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	9e-10
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	7e-04
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	1e-09
3pnn_A	303	Conserved domain protein; structural genomics, PSI	1e-09
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	2e-09
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	1e-08
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	3e-07
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	2e-08
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-08
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-07
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	2e-08
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	3e-08
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	4e-08
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	3e-07
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	8e-08
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	9e-07
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	1e-06
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	4e-06
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	4e-06
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	6e-06
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	1e-05
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	4e-05
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	2e-05
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	3e-05
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	1e-04
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	4e-05
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	4e-05
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	1e-04
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-05
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	6e-05
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-05
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-05
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	6e-05
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	6e-05
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	1e-04
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	7e-05
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	9e-05
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	1e-04
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	1e-04
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	1e-04
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	2e-04
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	2e-04
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	3e-04
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	3e-04
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	4e-04

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score =  220 bits (564), Expect = 3e-71
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 21/228 (9%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA+IL  G GTRL  +    PKPLV      +IL  ++ L    V+E ++  +   + +
Sbjct: 19  MKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSP-HVSEFIIVASRYADDI 73

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             FLK+       KI+     E  G    L +A++ +     + F +   D +      +
Sbjct: 74  DAFLKDK--GFNYKIVRHDRPE-KGNGYSLLVAKNHV----EDRFILTMGDHVYS---QQ 123

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
            IE      G  +    +  +  +   + +E+  G+V K  +  +    + ++ G ++L+
Sbjct: 124 FIEKAVRGEGVIADREPRFVDIGEATKIRVED--GRVAKIGKDLRE--FDCVDTGFFVLD 179

Query: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYI 227
            ++ +  E +    E+    +I    +L    +    WMD+    D  
Sbjct: 180 DSIFEHAE-KLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVR 226

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score =  219 bits (559), Expect = 4e-70
 Identities = 46/246 (18%), Positives = 97/246 (39%), Gaps = 30/246 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+IL  G GTRLRPLT + PK LV+   KP+I +QIE LK  G+ ++++ + Y  E  
Sbjct: 26  VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 85

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                  + K G++++ + +         L L +++L +     + +   + + +     
Sbjct: 86  ----DYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANS----YVIDADNYLFK----- 132

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
                +     ++      ++ +    +V  +   KV+  +   K     +I +G+   +
Sbjct: 133 --NMFRNDLTRSTYFSVYREDCTNEWFLVYGDD-YKVQDIIVDSK---AGRILSGVSFWD 186

Query: 181 PAVLDRI----------ELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYITG 229
               ++I                    +      E  ++   L G    +I   +DY   
Sbjct: 187 APTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKL 246

Query: 230 LRLYLD 235
             +  +
Sbjct: 247 EEILKN 252

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score =  212 bits (543), Expect = 8e-66
 Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 28/342 (8%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA IL  G G RL P+T + PK  V   +KP+I +QIE L+  G+ ++ + ++ + +  
Sbjct: 1   MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK-- 58

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
               + FE KL    I +Q+ +  GT   +  A+        +   ++  D+   +E   
Sbjct: 59  ----EYFEKKLKEISIVTQKDDIKGTGAAILSAKFN------DEALIIYGDLFFSNEKEI 108

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 178
             +I        E +I+  KV  P  YGV+V++     + K +EKP++   N INAGIY 
Sbjct: 109 CNIITLK-----ENAIIGVKVSNPKDYGVLVLDNQ-NNLSKIIEKPEIPPSNLINAGIYK 162

Query: 179 LNPAVLDRIELRPTSIEKEV----FPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLY 233
           LN  +   ++    S   E+       +  +  ++  +   G+WMDIG+P + I   +  
Sbjct: 163 LNSDIFTYLDKISISERGELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWA 222

Query: 234 LDSLRKKSSL-KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV 292
           LD+L    +L  +     I G V++ E A+I  G  I   V +G G  +     L   T+
Sbjct: 223 LDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTI 282

Query: 293 -MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
            +   +I     +  S+I   S +   + V + +++ EDV+ 
Sbjct: 283 LVEKNKIGASVEVKESVIMEGSKIPHLSYVGD-SVIAEDVNF 323

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259

 Score =  173 bits (441), Expect = 1e-52
 Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            KA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+
Sbjct: 3   SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62

Query: 61  LNFLKEFEA--------------------KLGIKIICSQETEPLGTAGPLALARDKLIDD 100
             +   +                           +      +   T G L    + +   
Sbjct: 63  KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYV--K 120

Query: 101 TGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160
             E F     D +++      I+FHKAHG +A++  T    P ++G + ++   G+V  F
Sbjct: 121 DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGALDIQA--GQVRSF 176

Query: 161 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFW--M 218
            EKPK   G  IN G ++LNP+V+D I+   T+ E+E    +A +G+L A   PGFW  M
Sbjct: 177 QEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPM 235

Query: 219 DIGQPRDYITGL 230
           D  + + Y+ GL
Sbjct: 236 DTLRDKVYLEGL 247

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score =  145 bits (368), Expect = 2e-42
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 26/190 (13%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M ALI+ GG GTR+  +     KPL++   + +I + +  L    V  + +A +      
Sbjct: 1   MDALIMAGGKGTRMGGV----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP--F 118
             ++    A    K I   +T   G    L            EPF V++SD+I+      
Sbjct: 57  KEYIN--SAYKDYKNIVVIDTSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKII 110

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 178
             ++++             K   P    + VM       ++    P +     + A I +
Sbjct: 111 NSIVDYFYCI---------KAKTPDVEALAVMIP-----KEKYPNPSIDFNGLVPADINV 156

Query: 179 LNPAVLDRIE 188
           ++P    + E
Sbjct: 157 VSPKHGYQKE 166

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score =  105 bits (264), Expect = 2e-25
 Identities = 79/364 (21%), Positives = 140/364 (38%), Gaps = 56/364 (15%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           + A+IL  G GTR+      +PK L   A KPM+ H I+    +G   + L   +  ++M
Sbjct: 6   LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L   +          Q  E LGTA  +  A     D+  E   VL  D   I++   
Sbjct: 63  RTHLANEQVN-----WVLQT-EQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINA 174
            ++IE    +G   +++   +D P+ YG ++ E   G V   VE      +     ++N 
Sbjct: 115 EKLIEAKPENG--IALLTVNLDNPTGYGRIIREN--GNVVAIVEQKDANAEQLNIKEVNT 170

Query: 175 GIYLLNPAVLDRI--ELRPTSIEKE-----VFPKIALEGKLFAMVLPGFWMDIGQPRDY- 226
           G+ + + A   +    +   + + E     +      +      V         Q  D  
Sbjct: 171 GVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAV---------QATDVM 221

Query: 227 -ITGL--RLYLDSL------RKKSSLKLATGANIV--GNVLVHESAQIGEGCLIGP---- 271
            + G   RL L +L      ++ S L L  G  I       +  + + G+   I      
Sbjct: 222 EVEGANNRLQLAALERYFQNKQASKL-LLEGVMIYDPARFDLRGTLEHGKDVEIDVNVII 280

Query: 272 --DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE 329
             +V +G    + +G  L    +   V IK ++ +  SI+G  + +G ++R+     L  
Sbjct: 281 EGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAA 340

Query: 330 DVHV 333
           + HV
Sbjct: 341 ETHV 344

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 88.6 bits (218), Expect = 2e-20
 Identities = 39/242 (16%), Positives = 74/242 (30%), Gaps = 25/242 (10%)

Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           +I + G  +R      + PK ++E   + +  H + +  A   +   L I         F
Sbjct: 3   VIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVF 62

Query: 64  LKEFEAKLGIKII--CSQETEPLGTAGPLALARDKLID---DTGEPFFVLNSDVISEYPF 118
           ++E   +LGIK        TE  G A  + L  ++L     D      V N D       
Sbjct: 63  VREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTF----R 118

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 178
              +    +   +  + V +    +           G  +      K  + +  + G+Y 
Sbjct: 119 PNFVFPDISQHSDGYLEVFQGGGDNWSFAKPEH--AGSTKVIQTAEKNPISDLCSTGLYH 176

Query: 179 LNPAVLDRIELR---------PTSIEKEVFPKIAL---EGK--LFAMVLPGFWMDIGQPR 224
            N         R             E  + P       +G    + ++     +  G P 
Sbjct: 177 FNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPD 236

Query: 225 DY 226
           +Y
Sbjct: 237 EY 238

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
              L+L  G GTR+R      PK L   A + M+ H + A+  +    +++ + +  + +
Sbjct: 13  TAVLVLAAGPGTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRI 69

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              + E    LG  I  + +  PLGT   +      L DD      V + D   +     
Sbjct: 70  APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTL 129

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINA 174
           A++I  H+A     +++ T +D+P  YG ++  +   +V   VE     P      ++NA
Sbjct: 130 ADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVNA 188

Query: 175 GIYLLNPAVL 184
           G+Y  + A L
Sbjct: 189 GVYAFDIAAL 198

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 266 GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 325
           G  +     +G  CVV     L+   V  G  +      SSS IG  + VG +  +   T
Sbjct: 295 GTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVV-RTHGSSSSIGDGAAVGPFTYLRPGT 353

Query: 326 ILGEDVHV 333
            LG D  +
Sbjct: 354 ALGADGKL 361

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 83.3 bits (207), Expect = 8e-18
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 18/188 (9%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L + A   M+ H   ++ A+   + V  + ++ E++  
Sbjct: 14  AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV-- 68

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
                E  L  +     ++E LGT   + +    L   +G    V+  D   I+      
Sbjct: 69  -----EEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSG-HTLVIAGDTPLITGESLKN 122

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGI 176
           +I+FH  H   A+I+  + D P  YG +V  ++  +V + VE            +IN G 
Sbjct: 123 LIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGT 181

Query: 177 YLLNPAVL 184
           Y+ +   L
Sbjct: 182 YVFDNERL 189

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 266 GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 325
             ++     +G   V+ +G  +   T+  G  I  ++ I  S +    TVG +A +   +
Sbjct: 286 NVILKGQTKIGAETVLTNGTYVVDSTIGAGAVI-TNSMIEESSVADGVTVGPYAHIRPNS 344

Query: 326 ILGEDVHV 333
            LG  VH+
Sbjct: 345 SLGAQVHI 352

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 52/274 (18%)

Query: 118 FAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 174
           +  M++ H   G + +I   +V   E + +GV+ + E   ++  F+EKP    G   N  
Sbjct: 142 YEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNE-KDEIIDFIEKPADPPGIPGNEG 200

Query: 175 ------GIYLLNPAVL----DRIELRPTSIE---KEVFPKIALEGKLFA----------- 210
                 GIY+ +   L     R    PTS     K++ P I   GK  A           
Sbjct: 201 FALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSD 260

Query: 211 MVLPGFWMDIGQPRDY----------ITGLRLYLDSLRKKSSLKLATGANIVGNVLVHE- 259
                +W D+G    Y          +  L +Y  S    +  ++   A  V +      
Sbjct: 261 FEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRG 320

Query: 260 ---SAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH 312
              S+ +   C+I G  +    +  G    S  RL    V+  V+I +HA +S+ +I   
Sbjct: 321 SAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHG 380

Query: 313 STVGQWARVENMTILGEDVHVCDEIY-SNGGVVL 345
             +      E + +  +          +  G+ L
Sbjct: 381 VVIP-----EGLIVGEDPELDAKRFRRTESGICL 409

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANK 31
          A +L GG G+RL+ LT    KP V F  K
Sbjct: 15 AYVLAGGRGSRLKELTDRRAKPAVYFGGK 43

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 77.9 bits (193), Expect = 5e-16
 Identities = 56/190 (29%), Positives = 76/190 (40%), Gaps = 21/190 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A KPM+ H I+A   +G   V L   +  E++
Sbjct: 9   MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELL 65

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L +            Q  E LGT   +  A     DD  E   +L  DV  IS    
Sbjct: 66  KKTLADPSLN-----WVLQA-EQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 117

Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINA 174
             ++      G    ++  K+D PS YG +V E   G V   VE           N+IN 
Sbjct: 118 QRLLAAKPEGG--IGLLTVKLDNPSGYGRIVREN--GDVVGIVEHKDASDAQREINEINT 173

Query: 175 GIYLLNPAVL 184
           GI + N   L
Sbjct: 174 GILVANGRDL 183

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 254 NVLVHESAQIGEGCLIGP------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 307
              +      G    I         V +G    + +G  L  C +     I  +  +  +
Sbjct: 262 RFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDA 321

Query: 308 IIGWHSTVGQWARVENMTILGEDVHV 333
            +  + TVG +AR+     L E  HV
Sbjct: 322 RLDANCTVGPFARLRPGAELAEGAHV 347

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297

 Score = 72.9 bits (180), Expect = 1e-14
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 61/230 (26%)

Query: 2   KALILVGGFGTRLRPLTLSVPK---PLVEFANKPMILHQIEALKAVGVTEVVL------- 51
           KA+  V G GTR  P T ++PK   P+V   ++P+I + ++     G+ +++        
Sbjct: 16  KAVFPVAGLGTRFLPATKAMPKEMLPVV---DRPLIQYAVDEAVEAGIEQMIFVTGRGKS 72

Query: 52  AI------NYQPEVML------NFLKEFEAKLGIKIICSQETEPLGTAGPLAL------A 93
           A+       Y+ E  +        + +        I   ++ EP+G      L      A
Sbjct: 73  ALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMG------LGHAVWCA 126

Query: 94  RDKLIDDTGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMVTKV--DEPSKYGVV 148
           R  ++ D  EPF VL  D     +     +M++ +   GG   I   +V  D+  +YG++
Sbjct: 127 R-DIVGD--EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGII 182

Query: 149 VMEESTG---KVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 188
                 G   +V+  VEKP        L V      G Y+L P V+  +E
Sbjct: 183 TPGTQDGVLTEVKGLVEKPAPGTAPSNLSV-----IGRYILQPEVMRILE 227

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Length = 302

 Score = 70.6 bits (174), Expect = 5e-14
 Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 69/238 (28%)

Query: 2   KALILVGGFGTRLRPLTLSVPK---PLVEFANKPMILHQIEALKAVGVTEVVL------- 51
           KA+I V G GTR+ P T ++PK   PLV   +KP+I + +    A G+TE+VL       
Sbjct: 10  KAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAAGITEIVLVTHSSKN 66

Query: 52  AI------NYQPEVML------NFLKEFEAKL--GIKIICSQETEPLGTAGPLAL----- 92
           +I      +++ E ML        L E ++     + I+  ++    G      L     
Sbjct: 67  SIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKG------LGHAVL 120

Query: 93  -ARDKLIDDTGEPFFVLNSDVI--------SEYPFAEMIEFHKAHGGEASIMVTKVDEPS 143
            A   ++ D  EP  V+  DVI        S+   AEMI      G  + IMV  V + +
Sbjct: 121 CAH-PVVGD--EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVADVT 176

Query: 144 KYGVV------VMEESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 188
            YGVV      +    +  +   VEKPK       L +      G Y+L+  +   + 
Sbjct: 177 AYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAI-----VGRYVLSADIWPLLA 229

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 50/313 (15%), Positives = 113/313 (36%), Gaps = 82/313 (26%)

Query: 118 FAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 174
           + + I+ H+    + ++    +D    + +G++ ++E  G++ +F EKP+      +   
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKPQGEQLQAMKVD 210

Query: 175 --------------------GIYLLNPAVL-DRIELRPTSIE---KEVFPKIALEG-KLF 209
                               GIY+++  V+ + +  +         EV P     G ++ 
Sbjct: 211 TTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQ 270

Query: 210 AMVLPGFWMDIGQPRDY-----------ITGLRLYLDSLRKKSSLKLATGANIVGNVLVH 258
           A +  G+W DIG    +           +     Y  S    +  +    + ++   +  
Sbjct: 271 AYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 330

Query: 259 ESAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRG------------------- 295
             + IGEGC+I    +    VG    +  G  +    +M                     
Sbjct: 331 --SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVP 388

Query: 296 VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE-------IYSNGGVVLPHK 348
           + I K+  I  +II  ++ +G     +N+ I+ +D +V +           +G V +   
Sbjct: 389 IGIGKNCHIKRAIIDKNARIG-----DNVKIINKD-NVQEAARETDGYFIKSGIVTVI-- 440

Query: 349 EIKSSILKPEIVM 361
             K +++   I++
Sbjct: 441 --KDALIPSGIII 451

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANK 31
           +IL GG GTRL PLT    KP V     
Sbjct: 23 GIILGGGAGTRLYPLTKKRAKPAVPLGAN 51

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281

 Score = 67.9 bits (167), Expect = 4e-13
 Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 64/233 (27%)

Query: 2   KALILVGGFGTRLRPLTLSVPK---PLVEFANKPMILHQIEALKAVGVTEVVL------- 51
           K L    G+GTR  P+T ++PK   P+V   +KP+I + +E     G   + +       
Sbjct: 4   KCLFPAAGYGTRFLPITKTIPKEMLPIV---DKPLIQYAVEEAMEAGCEVMAIVTGRNKR 60

Query: 52  AI------NYQPEVML------NFLKEFEAKL-GIKIICSQETEPLGTAGPLAL------ 92
           ++      +Y+ E  +      N LK     +        ++ +  G      L      
Sbjct: 61  SLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKG------LGHAILT 114

Query: 93  ARDKLIDDTGEPFFVLNSDVI----SEYP-FAEMIEFHKAHGGEASIMVTKV--DEPSKY 145
               LI +  EPF V+ +D +           +M   ++ +   + + + +V  +E SKY
Sbjct: 115 GE-ALIGN--EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKY 170

Query: 146 GVVVMEESTG---KVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 188
           GV+  E       +++  VEKP        L V      G Y+L P + + + 
Sbjct: 171 GVIRGEWLEEGVYEIKDMVEKPNQEDAPSNLAV-----IGRYILTPDIFEILS 218

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323

 Score = 64.9 bits (159), Expect = 6e-12
 Identities = 49/226 (21%), Positives = 83/226 (36%), Gaps = 49/226 (21%)

Query: 2   KALILVGGFGTRLRPLTLSVPK---PLVEFANKPMILHQIEALKAVGVTEVVL------- 51
             ++   G GTR  P T +VPK   P+V   + P I         +G T + +       
Sbjct: 14  TVVVPAAGLGTRFLPATKTVPKELLPVV---DTPGIELIAAEAAELGATRLAIITAPNKA 70

Query: 52  AI------NYQPEVML------NFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLI 98
            +      + + E  L      + ++        IK +   + +PLG    + LA   ++
Sbjct: 71  GVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAES-VL 129

Query: 99  DDTGEPFFV-LNSDVISEYP-FAEMIEFHKAHGGEASIMVTKV--DEPSKYGVV-----V 149
           DD  +   V L  D++        M +     GG + +   +V   + SKYG+       
Sbjct: 130 DDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADT 188

Query: 150 MEESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 188
            +    KV+  VEKP        L        G YLL+  + D + 
Sbjct: 189 KDSDVKKVKGMVEKPAIEDAPSRLAA-----TGRYLLDRKIFDALR 229

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 13/129 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            ++L  G   RL       PK L+ + +  ++   ++  +  G  +++L +         
Sbjct: 8   GVVLAAGRSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASA--- 59

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            ++   A  G  ++  ++ E  G A  L +A  ++         ++  D   ++      
Sbjct: 60  -VRAAMALDGTDVVVVEDVE-RGCAASLRVALARV-HPRATGIVLMLGDQPQVAPATLRR 116

Query: 121 MIEFHKAHG 129
           +I+   A  
Sbjct: 117 IIDVGPATE 125

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL---------------S 288
            +  G  I  NV + ++  I  GC+I  +V +  G  + +   L                
Sbjct: 10  IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKH 69

Query: 289 RCTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 345
              +     I+    I   +IIG +   G    +   T +G +V +         V +
Sbjct: 70  PLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYI 127

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 303
            +    NI  NV V E + I +   + P        VV +         + GV I+  A 
Sbjct: 126 YIGNYVNIHSNVFVGEKSIIKDFVWLFP-------HVVLTNDPTPPSNELLGVTIELFAV 178

Query: 304 I-SSSIIGWHSTVGQWARVENMTILGEDV 331
           I + S++     + + A V    ++ +DV
Sbjct: 179 IAARSVVLPGIHINEDALVGAGAVVTKDV 207

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 62/240 (25%), Positives = 92/240 (38%), Gaps = 38/240 (15%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG G+RL P+T    K L+     PMI H +  LK   +T+ ++ I    E M
Sbjct: 25  MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITD-IMIIT-GKEHM 82

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV------ 112
            + +       + G+      + +  G A  L L  D          FV N  +      
Sbjct: 83  GDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCED----------FVGNDRMVVILGD 132

Query: 113 -ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK 171
            I        +E        A +++  VD+P ++GV        K+ +  EKPK    + 
Sbjct: 133 NIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVA--NIQNRKIIEIEEKPKEPKSSY 190

Query: 172 INAGIYLLNPAVLD---------RIELRPTSIEKEVFPKIALE-GKLFAMVLPGFWMDIG 221
              GIYL +  V           R EL  T I         L+ G L    + G+W D G
Sbjct: 191 AVTGIYLYDSKVFSYIKELKPSARGELEITDINNWY-----LKRGVLTYNEMSGWWTDAG 245

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 46/303 (15%), Positives = 82/303 (27%), Gaps = 74/303 (24%)

Query: 1   MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
           MK    +L  G G+R    +L     +       ++ + +      G   +V  I     
Sbjct: 4   MKPTLFVLAAGMGSRYG--SLKQLDGIGP-GGDTIMDYSVYDAIRAGFGRLVFVIR--HS 58

Query: 59  VMLNFLKEFEAKLGIKI-----------------ICSQETEPLGTAGPLALARDKLIDDT 101
               F ++   K   +I                       +P GT   + + RD      
Sbjct: 59  FEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDA----I 114

Query: 102 GEPFFVLNSD----VISEYPFAEMIEFHKAHGGEASIMVTKVD------EPSKYGVVVME 151
            EPF V+N+D           A  +   +   GE  ++  +V            GV  ++
Sbjct: 115 REPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVD 174

Query: 152 ESTGKVEKFVEKPK-------------------LFVGNKINAGIYLLNPAVLDRIELRPT 192
           E    +   VE+                     L     ++  ++   P   D  E    
Sbjct: 175 E-KHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFI 233

Query: 193 SIEKEVFPKIALE-------------GKLFAMVLP--GFWMDIGQPRDYITGLRLYLDSL 237
           +       +   E             G+    VL     W  +    D   G+   L  L
Sbjct: 234 NFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDD-RPGVVAKLREL 292

Query: 238 RKK 240
            + 
Sbjct: 293 TEA 295

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 27/156 (17%)

Query: 1   MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
           M+  A++L GG         +   K LV +  +PM+   +EAL A G++ V +  N    
Sbjct: 1   MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59

Query: 59  VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEY 116
                              +         G L     + ++       V   D+  ++E 
Sbjct: 60  ------------------PAPALTLPDRGGLLENLE-QALEHVEGRVLVATGDIPHLTEE 100

Query: 117 PFAEMIEFHKAHGGEASIMVTKVDE---PSKYGVVV 149
               +++          I+  +  E   P       
Sbjct: 101 AVRFVLDKAPEAALVYPIVPKEAVEARFPRTKRTYA 136

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 299
           ++ KL    +I  N ++    ++G+  +IG    VG    + +G RL +  T+   ++I 
Sbjct: 108 ATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIG 167

Query: 300 KHACI-SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 340
           ++  I S +++G     + +  G W ++  +   I+G+ V    EI + 
Sbjct: 168 QNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRV----EIGAC 212

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 315
           +  SA I     +G +V++G   V+ESGV L     +  G  + K++      IG  S +
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNS-----KIGAGSRL 154

Query: 316 GQWARVENMTILGEDVHV 333
                + +   +G++  +
Sbjct: 155 WANVTIYHEIQIGQNCLI 172

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 21/174 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E +L I+  P+  
Sbjct: 3   RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIRE-ILIIS-TPQDT 60

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-------FVLNSD 111
             F +     +  G+ +  + +  P G      LA+  LI   GE F        VL  +
Sbjct: 61  PRFQQLLGDGSNWGLDLQYAVQPSPDG------LAQAFLI---GESFIGNDLSALVLGDN 111

Query: 112 VISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPK 165
           +   + F E++         AS+    V +P +YGVV  ++  GK     EKP 
Sbjct: 112 LYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPL 164

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 299
           +  ++   A++    ++   A+IG G  IG    +G   V+  G  L  R T+   V I 
Sbjct: 130 ADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIG 189

Query: 300 KHACI-SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 340
               I S ++IG     + +  G W ++  +    +G+DV    EI +N
Sbjct: 190 ARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDV----EIGAN 234

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 315
           +H +A +     + P  +VG   V+ESG R+ +  ++     I   +     +IG    +
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARS-----VIGEGGWL 176

Query: 316 GQWARVENMTILGEDVHV 333
                + +   +G  V +
Sbjct: 177 APRVTLYHDVTIGARVSI 194

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            ++L  G+  RL       PK L+   +  ++   +   +     ++++ +    +    
Sbjct: 8   GVVLAAGYSRRLG-----TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADE--- 59

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            + E     G+ I+   +   LG +  L  A   + D T E   ++  D   I+    A 
Sbjct: 60  -VLEKVELDGLDIVLVDDAG-LGCSSSLKSALTWV-DPTAEGIVLMLGDQPGITASAVAS 116

Query: 121 MIEFHKAHG 129
           +I   +   
Sbjct: 117 LIAGGRGAT 125

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 21/174 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ E +L I   PE  
Sbjct: 4   MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIRE-ILIIT-TPEDK 61

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-------FVLNSD 111
             F +     ++ GI++  +++  P G      LA+  +I   GE F        VL  +
Sbjct: 62  GYFQRLLGDGSEFGIQLEYAEQPSPDG------LAQAFII---GETFLNGEPSCLVLGDN 112

Query: 112 VISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPK 165
           +     F+  +    A    A++   +V +P ++GVV  +++  +     EKPK
Sbjct: 113 IFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAISLEEKPK 165

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 299
            +  +     I    +V + A +G  C IG    +G    V     +  R  +   V I 
Sbjct: 135 PTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIG 194

Query: 300 KHACI-SSSIIG------WHSTVGQWARVENM--TILGEDVHVCDEIYSN 340
           K   I   ++IG        S  GQ   ++++   I+ +DV    EI +N
Sbjct: 195 KRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDV----EIGAN 240

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 315
           +H +A I    +I   V + P  VV     + S C +  G  I  ++      +G HS +
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYS-----TVGEHSYI 181

Query: 316 GQWARVENMTILGEDVHV 333
                +     +G+ V +
Sbjct: 182 HPRVVIRERVSIGKRVII 199

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295

 Score = 52.1 bits (126), Expect = 8e-08
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 21/174 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK ++L GG GTRL P+T +V K L+   +KPMI + +  L   G+ + +L I+  P  +
Sbjct: 4   MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRD-ILIIS-TPRDL 61

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-------FVLNSD 111
             +       ++ G++     + EP G      +A   ++   G+ F        VL  +
Sbjct: 62  PLYRDLLGDGSQFGVRFSYRVQEEPRG------IADAFIV---GKDFIGDSKVALVLGDN 112

Query: 112 VISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPK 165
           V   + F+E++    +    A I    V +P  +GVV  +   G+V    EKP 
Sbjct: 113 VFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVISIEEKPS 165

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Length = 208

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          MK  +LVGG G R+      + K  V    K +I   +E       T  V     Q E  
Sbjct: 1  MKVAVLVGGVGRRI-----GMEKTEVMLCGKKLIEWVLEKYSPF-QTVFVCRDEKQAE-- 52

Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLA 91
               +  ++   + I     +     G +A
Sbjct: 53 -----KLSSRYEAEFI----WDLHKGVGSIA 74

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 8/109 (7%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACI-------S 305
              +H +A + EG  IG    +     +  G  +   C++ + V +     I       +
Sbjct: 3   MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQN 62

Query: 306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 354
           +  +  +  +          +     +    I              +++
Sbjct: 63  NVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATL 111

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHA 302
           ++   + I   V +   A+IGEGC +G +V VG    + + V++ +  +V   V ++   
Sbjct: 17  RIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDV 76

Query: 303 CISSSIIGW----------------HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 345
               S++                   + V Q A +     +     +    +   G V+
Sbjct: 77  FCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 54/432 (12%), Positives = 112/432 (25%), Gaps = 161/432 (37%)

Query: 55  YQPEVMLNFLKEFEAKLGIK--------IICSQETEPLGTAGPLALARDKLID---DTGE 103
           Y+ +++  F   F      K        I+  +E + +  +        +L        E
Sbjct: 18  YK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 104 P----FF--VLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV 157
                F   VL  +    Y F  M          + +    +++  +     +       
Sbjct: 77  EMVQKFVEEVLRIN----YKFL-MSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVF 126

Query: 158 EK-FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-----K--LF 209
            K  V + + +   K+   +           ELRP          + ++G     K  + 
Sbjct: 127 AKYNVSRLQPY--LKLRQALL----------ELRPA-------KNVLIDGVLGSGKTWVA 167

Query: 210 AMVL---------PG--FWMDIGQ---PRDYITGL-RLYLD-----SLRKKSSLKLATGA 249
             V              FW+++     P   +  L +L        + R   S  +    
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 250 NIVGNVLVH--ESAQIGEGCLIGPDV-------AVGPGC-------------VVESGVR- 286
           + +   L    +S       L+  +V       A    C              + +    
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 287 -------------------LSRCTVMRGVRIKKHACISS----SIIG-----WHSTVGQW 318
                              L +    R   + +    ++    SII        +T   W
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 319 ARV-------------------------ENMTILGEDVHV---------CDEIYSNGGVV 344
             V                         + +++     H+          D I S+  VV
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 345 LPHKEIKSSILK 356
           + +K  K S+++
Sbjct: 408 V-NKLHKYSLVE 418

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +  ++L GG   R+      V K L+E   KP+  H  +AL    ++ VV+  N      
Sbjct: 7   ITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQ--- 58

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV 112
                E     G+K+I   E       GPLA     +  + GE F     D 
Sbjct: 59  -----EIYQASGLKVI---EDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT 102

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS- 305
              I     V+  A++  G        +     V     +   C +   V +  HA +  
Sbjct: 201 NVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRG 260

Query: 306 -SSIIGWHSTVGQWARVENMTILGEDVHVCD 335
              ++     +   A ++   ++   V +  
Sbjct: 261 GPILLDDRVLIEGHACIQGEILIERQVEISG 291

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 21/133 (15%)

Query: 1   MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
           M    +IL  G G R         K L +  N P+I+  I     +    +V    Y  E
Sbjct: 1   MNIGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDLEKIIIVGK--YVNE 53

Query: 59  VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEY 116
           ++          +   +I +      G +  L L      D       V   D+  +++ 
Sbjct: 54  ML-------PLLMDQIVIYNPFWN-EGISTSLKLGLRFFKDYDA--VLVALGDMPFVTKE 103

Query: 117 PFAEMIEFHKAHG 129
              ++I   K + 
Sbjct: 104 DVNKIINTFKPNC 116

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 250 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SI 308
           +    VL+H SA +    +IG  V+VGP C + S V+L       G ++   + +   + 
Sbjct: 3   SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLG-----NGCKLYPSSHVFGNTE 57

Query: 309 IGWHSTVGQWARVENMTILGEDVHVCDEIYS 339
           +G    +   A V +       +   + I  
Sbjct: 58  LGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 256 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII 309
           +VH +A IG+G      C IG  V +G GC +     +   T +    +     +    +
Sbjct: 15  VVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDEL 74

Query: 310 GWHSTVGQWARVENMTILGED 330
             ++ +G    + +  ++G  
Sbjct: 75  PGYTFIGCNNIIGHHAVVGVK 95

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 1  MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP 57
          M   A++   G G RLR      PK  V     P++ H +  L+A G +  +V+A+   P
Sbjct: 1  MATVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAV---P 54

Query: 58 EVMLNFLKEFEAKLGIKIIC 77
            + +  K         I+ 
Sbjct: 55 PALTDESKLVFGGEDSVIVS 74

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 256 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 306
           ++   A++ E        +I  +V++  G ++E  V++   + + +  R  + A I  
Sbjct: 8   IIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGV 65

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 255 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHS 313
           + +H +A I     +   V VGP  ++E  V +       G  I+ H  I + S IG  +
Sbjct: 1   MKIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQ-----EGTIIEGHVKICAGSEIGKFN 55

Query: 314 TVGQWA 319
              Q A
Sbjct: 56  RFHQGA 61

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVML 61
           ++L GG G R++    S+PK  +    +P+ L+       +  V E+V+          
Sbjct: 7  VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVC---DPFFR 60

Query: 62 NFLKEFEAKLGIKII 76
          +  +E+E  + + + 
Sbjct: 61 DIFEEYEESIDVDLS 75

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
           + ++A I     I   V +G  CV+  GV+L       GV++  +  +       H+ VG
Sbjct: 4   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLD-----EGVKLHNNVTLQG-----HTFVG 53

Query: 317 QWARVENMTILGED 330
           +   +    +LG  
Sbjct: 54  KNTEIFPFAVLGTQ 67

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 256 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 304
           ++   A+I +G      C+IG  V +  G  + + V L   T + +   I   A +
Sbjct: 9   IISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 64

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 256 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 306
           ++ E AQ+G+         +  D  +G   V++ G R+   T +    R+  +A +  
Sbjct: 12  VIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGD 69

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
           +H SA I EG  +G DV +     V    ++        V IK+ A I S      +T+G
Sbjct: 7   IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIG-----NNVVIKQGARILS-----DTTIG 56

Query: 317 QWARVENMTILGED 330
             +RV +  I+G+ 
Sbjct: 57  DHSRVFSYAIVGDI 70

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTV 315
           +H +A I  G  +   V VGP  +V S V +          I  H+ I   + IG  + +
Sbjct: 25  IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIG-----ARTTIGSHSVIEGHTTIGEDNRI 79

Query: 316 GQWA 319
           G +A
Sbjct: 80  GHYA 83

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 256 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 306
           ++   AQ+ E        ++G +V +G    + S   +   T +    RI  +A +  
Sbjct: 30  IIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGG 87

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SII 309
           I  +  VH +A + EG  IG +  +GP C+V   V +       G  +K H  ++  + I
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIG-----EGTVLKSHVVVNGHTKI 56

Query: 310 GWHSTVGQWA 319
           G  + + Q+A
Sbjct: 57  GRDNEIYQFA 66

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIK 299
            S++L  G  ++  V ++  + IG+  +I     V   C + +   L     +  GV + 
Sbjct: 110 PSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVG 169

Query: 300 KHACI-SSSIIGWHSTVGQWARV 321
           + A +   + +    T+G    V
Sbjct: 170 ERAFLGVGARVIPGVTIGADTIV 192

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 182 AVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKS 241
           A++D    R   +   V         L    L   ++ IG  R     LR  L    +  
Sbjct: 40  AIVDADPTRRAVLGVPVVGDDLALPMLREQGLSRLFVAIGDNR-----LRQKLGRKARDH 94

Query: 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 300
              L     I  + +V  S ++GEG  +   VA+     +     + +   V    R+  
Sbjct: 95  GFSLVN--AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGA 152

Query: 301 HACISSS-------IIGWHSTVGQWARVENMTILGEDVHV 333
              +  +        +G  + +G  ARV     +G D  V
Sbjct: 153 ACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIV 192

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN-YQPEVM 60
          A IL GG GTR+    +S+PK  +    KP+I+H +E         +++++         
Sbjct: 6  AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHA 63

Query: 61 LNFLKEFEAKLGIKIIC 77
           + +K++ +   I +I 
Sbjct: 64 EDNIKKYISDDRIVVIE 80

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 13/85 (15%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 239 KKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVR 297
             + ++   G  I+  V+++  A+I +G ++     +   CV+     +S        V+
Sbjct: 86  PSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVK 145

Query: 298 IKKHACI-SSSIIGWHSTVGQWARV 321
           I K+  +  +S +  + ++   + +
Sbjct: 146 IGKNCFLGINSCVLPNLSLADDSIL 170

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 Length = 337

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 34/186 (18%)

Query: 1   MK--ALILVGGFGTRLRPL-TLSVPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAI--- 53
           MK  AL++ GG G RL PL     PKP +     K ++   +E L  +   E  L     
Sbjct: 1   MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60

Query: 54  NYQPEVMLNFLKEFEAKLGIKIICSQETEPLG--TAGPLALARDKLIDDTGEPFFVLNSD 111
           + +               GI+++     EPLG  TAG + L   + + +  E   VL +D
Sbjct: 61  DQEAVAR-------PYADGIRLLL----EPLGRDTAGAVLLGVAEALKEGAERLLVLPAD 109

Query: 112 -VISEYP-FAEMIE--FHKAHGGEASIMVT---KVDEPSK-YGVVVMEESTG---KVEKF 160
             + +   + E +      A  G    +V    +   P   YG + +    G   + E F
Sbjct: 110 HYVGDDEAYREALATMLEAAEEGF---VVALGLRPTRPETEYGYIRLGPREGAWYRGEGF 166

Query: 161 VEKPKL 166
           VEKP  
Sbjct: 167 VEKPSY 172

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} Length = 201

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 19/89 (21%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            +L GG   R         K L E   K +I    E  K+V   EV +    +      
Sbjct: 17 CYVLAGGKSKRF-----GEDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDR------ 64

Query: 63 FLKEFEAKLGIKIICSQETEPLGTAGPLA 91
             E  + L   ++     +    +  + 
Sbjct: 65 ---EKFSFLNAPVV----LDEFEESASII 86

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVML 61
          A++L  G G R+     +VPK  +E   + +  + +        +  VV+      E   
Sbjct: 16 AILLAAGKGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTR--REWFE 70

Query: 62 NFLKEFEAKLGIKIIC 77
             K    +  + I+ 
Sbjct: 71 VVEKRVFHEKVLGIVE 86

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN 54
          A++   GFG R++      PK  +   N+ ++ H + AL A   V  VV+AI+
Sbjct: 10 AVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAIS 59

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN 54
          ALI   G G R        PK  VE  +K ++ H +   +    V   V+ ++
Sbjct: 9  ALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVS 58

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG-------- 295
           ++   A I+ N  ++  A IGEG +I  +  +G    V     +    V+ G        
Sbjct: 105 EIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAK 164

Query: 296 -VRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDV 331
            V ++    I ++ ++    TVG+ A V    ++ EDV
Sbjct: 165 PVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDV 202

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAIN 54
          A++   G G RL      VPK   +   + +I   ++ L   G V  VV+A+ 
Sbjct: 10 AIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVP 59

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN-YQPEVM 60
          A IL GG GTR+      +PK  +E  ++P+++H IE       + ++V+ ++       
Sbjct: 5  AGILAGGTGTRMGISN--LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHA 62

Query: 61 LNFLKEFEAKLGIKII 76
           + + ++      +II
Sbjct: 63 EDLVDKYLPLYKERII 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	100.0
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	100.0
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	100.0
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	100.0
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	100.0
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	100.0
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	100.0
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	100.0
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	100.0
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	100.0
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	100.0
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	100.0
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	100.0
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	100.0
3pnn_A	303	Conserved domain protein; structural genomics, PSI	100.0
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	100.0
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.97
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.96
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.95
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.95
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.94
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.93
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.93
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.93
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.92
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.91
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.9
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.9
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.88
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.85
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.84
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.84
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.83
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.82
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.82
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.81
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.81
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.8
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.79
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.78
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.78
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.76
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.75
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.75
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.75
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	99.74
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.71
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.7
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	99.69
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.68
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.67
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	99.67
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.67
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.67
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.67
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.66
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.66
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.66
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.65
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.65
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.65
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.64
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.64
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.64
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.64
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.63
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.63
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.62
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.62
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	99.62
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.61
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.61
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.61
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.61
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.6
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.59
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.59
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.59
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.59
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.58
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.58
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.58
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.57
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.57
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.57
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.56
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.56
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.55
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.55
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.55
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.55
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.54
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.54
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.54
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.54
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.54
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.54
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.53
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.53
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.53
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.53
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.53
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.52
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.51
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.51
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.5
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	99.5
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.49
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.47
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.47
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.47
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.47
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	99.46
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.45
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.45
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.44
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.44
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	99.44
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.43
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.43
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.43
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.42
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.42
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.42
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.41
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.41
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.4
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.4
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.38
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.37
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.37
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.37
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.35
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.35
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.35
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.35
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.3
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.29
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.29
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.27
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.27
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.27
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.26
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.26
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.25
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.24
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.22
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.22
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.22
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.21
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.19
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.19
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.18
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.18
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.17
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.08
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.06
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.04
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.97
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.97
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	98.96
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.84
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.84
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.81
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.72
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	98.55
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	98.42
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	97.72
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	97.69
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	96.6
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	93.27
3bcv_A	240	Putative glycosyltransferase protein; protein stru	91.3
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	91.23
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	86.54
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	84.99

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.1e-49  Score=374.31  Aligned_cols=340  Identities=21%  Similarity=0.326  Sum_probs=271.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhh-----ccCc
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEA-----KLGI   73 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~-----~~~~   73 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++++|+++++.+++.+++.+ |.-     ..++
T Consensus        13 ~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~v   92 (420)
T 3brk_X           13 AMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESF   92 (420)
T ss_dssp             EEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCCGGGTCEE
T ss_pred             eEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhccccccccCCE
Confidence            5799999999999999999999999999999 99999999999999999999999987889888876 321     0113


Q ss_pred             EEEEecCC--CC---CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCce
Q 018060           74 KIICSQET--EP---LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYG  146 (361)
Q Consensus        74 ~i~~~~~~--~~---~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~  146 (361)
                      .+....+.  ++   .|++++++.+++.+...+.+++++++||+++..++.++++.|+++++++++++.+.  +++..|+
T Consensus        93 ~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g  172 (420)
T 3brk_X           93 DILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFG  172 (420)
T ss_dssp             EEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSE
T ss_pred             EEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCccc
Confidence            33322221  23   69999999999887432234899999999988899999999998888888887765  4566899


Q ss_pred             eEEEcCCCCeEeeeeecCCCCC-------CCeEEEEEEEeCHhhH-hhccCC------CCccccchHHhHHhcCceEEEE
Q 018060          147 VVVMEESTGKVEKFVEKPKLFV-------GNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEGKLFAMV  212 (361)
Q Consensus       147 ~v~~~~~~~~v~~~~ek~~~~~-------~~~~~~Giyi~~~~~l-~~l~~~------~~~~~~d~l~~l~~~~~i~~~~  212 (361)
                      ++..+++ +++.+|.|||....       +.+.++|+|+|++++| +.++..      ..++..|+++.++++++++++.
T Consensus       173 ~v~~d~~-g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~v~~~~  251 (420)
T 3brk_X          173 VMHVNEK-DEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHR  251 (420)
T ss_dssp             EEEECTT-SBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSCEEEEE
T ss_pred             EEEECCC-CcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCcEEEEE
Confidence            9998876 89999999986433       5689999999999987 445321      2245568899999888999999


Q ss_pred             e-----------cceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECC-----CcEECCCcEEC
Q 018060          213 L-----------PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGE-----GCLIGPDVAVG  276 (361)
Q Consensus       213 ~-----------~~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~ig  276 (361)
                      +           +++|.|++|++||.++++.++......  ....+...+.+.+.++++++|++     ++.+ +++.||
T Consensus       252 ~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~--~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig  328 (420)
T 3brk_X          252 FADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDL--DIYDKSWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVS  328 (420)
T ss_dssp             HHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSS--CTTCCSSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEEC
T ss_pred             eccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchh--hcCCCCCceeeccccCCCcEEecccccCCcEe-cCCEEC
Confidence            9           889999999999999998877543211  11223334555566666666666     7788 699999


Q ss_pred             CCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEcc
Q 018060          277 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  346 (361)
Q Consensus       277 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~  346 (361)
                      ++|+| .++.|.+|+|+++|.||++|.|.+|+||+++.||++|.|.+ ++||+++.|++++++.+....|
T Consensus       329 ~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i~~~~~~~  396 (420)
T 3brk_X          329 GDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPELD  396 (420)
T ss_dssp             SSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEESSCHHHH
T ss_pred             CCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEec-eEECCCCEECCCCEEeCCCCCC
Confidence            99999 89999999999999999999999999999999999999997 9999999999999997654444

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=5.3e-49  Score=373.35  Aligned_cols=334  Identities=19%  Similarity=0.335  Sum_probs=242.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhhcc-------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEAKL-------   71 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~~~-------   71 (361)
                      |+|||||||+|+||+|||...||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+ |+..+       
T Consensus        21 ~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~  100 (451)
T 1yp2_A           21 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG  100 (451)
T ss_dssp             EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC
T ss_pred             eEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhhhcccccccccC
Confidence            6799999999999999999999999999999 99999999999999999999999988888888864 31011       


Q ss_pred             CcEEEEecCC-----CCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEcc--CCCC
Q 018060           72 GIKIICSQET-----EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSK  144 (361)
Q Consensus        72 ~~~i~~~~~~-----~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~--~~~~  144 (361)
                      .+++....+.     ...|++++++.++..+.....++|++++||+++..++.++++.|+++++++++++.+..  ++..
T Consensus       101 ~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~  180 (451)
T 1yp2_A          101 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATA  180 (451)
T ss_dssp             EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTT
T ss_pred             cEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhccc
Confidence            1334332221     14699999999998885323458999999999888999999999988888888877653  5678


Q ss_pred             ceeEEEcCCCCeEeeeeecCCCC---------------------CCCeEEEEEEEeCHhhHh-hccCC---CCccccchH
Q 018060          145 YGVVVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLD-RIELR---PTSIEKEVF  199 (361)
Q Consensus       145 ~~~v~~~~~~~~v~~~~ek~~~~---------------------~~~~~~~Giyi~~~~~l~-~l~~~---~~~~~~d~l  199 (361)
                      ||++..+++ ++|.+|.|||...                     .+.+.++|+|+|++++|. .++..   ..++..+++
T Consensus       181 ~g~v~~d~~-~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l  259 (451)
T 1yp2_A          181 FGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI  259 (451)
T ss_dssp             SEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH
T ss_pred             CCEEEECCC-CCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHH
Confidence            999999875 8999999998631                     256889999999999874 44432   234556889


Q ss_pred             HhHHhc-CceEEEEecceEEEcCCHHHHHHHHHHHHHhhhhc-----------ccccccCCcEEecceEEcCCCEECCCc
Q 018060          200 PKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK-----------SSLKLATGANIVGNVLVHESAQIGEGC  267 (361)
Q Consensus       200 ~~l~~~-~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~~-----------~~~~~~~~~~i~~~~~i~~~~~i~~~~  267 (361)
                      +.++.+ .+++++..+++|.|++++++|.++++.++......           ....+.+++.+ .++.| .++.|+++|
T Consensus       260 ~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~  337 (451)
T 1yp2_A          260 PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKM-LDADV-TDSVIGEGC  337 (451)
T ss_dssp             HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEE-EEEEE-EEEEECTTC
T ss_pred             HHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEE-cceEE-eCeEECCCC
Confidence            888887 67999999999999999999999998776543110           01112233333 22222 223444444


Q ss_pred             EECC----CcEECCCCEECCCcEEeceEEccC-------------------cEECCCCEEeccEEcCCCEECCCcEEcCc
Q 018060          268 LIGP----DVAVGPGCVVESGVRLSRCTVMRG-------------------VRIKKHACISSSIIGWHSTVGQWARVENM  324 (361)
Q Consensus       268 ~i~~----~~~ig~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~i~~~~~ig~~~~i~~~  324 (361)
                      +|++    +++||++|.||++|.|.++++..+                   +.||++|.|.+++||++|+||+++.|.++
T Consensus       338 ~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~  417 (451)
T 1yp2_A          338 VIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINK  417 (451)
T ss_dssp             EEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCS
T ss_pred             EEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCC
Confidence            3332    677777777777777777666656                   77887877777777777888877777764


Q ss_pred             e------EECCCeEECCce
Q 018060          325 T------ILGEDVHVCDEI  337 (361)
Q Consensus       325 ~------~ig~~~~v~~~~  337 (361)
                      +      +||++++||+++
T Consensus       418 ~~~~~~~~ig~~~~ig~~~  436 (451)
T 1yp2_A          418 DNVQEAARETDGYFIKSGI  436 (451)
T ss_dssp             SCCSCEEEGGGTEEEETTE
T ss_pred             cccccCceeCCCEEEcCCE
Confidence            2      456666666654

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=100.00  E-value=5.9e-48  Score=361.02  Aligned_cols=341  Identities=23%  Similarity=0.400  Sum_probs=271.5

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|++++|.++++++++|+++++   +++++.+...  ++.+.  .+
T Consensus         1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~--~i~~~--~~   73 (401)
T 2ggo_A            1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK--EISIV--TQ   73 (401)
T ss_dssp             CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT--TCEEE--EC
T ss_pred             CeEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC--cEEEE--eC
Confidence            89999999999999999999999999999999999999999999999999999876   6667665211  34443  34


Q ss_pred             CC-CCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060           81 TE-PLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV  157 (361)
Q Consensus        81 ~~-~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v  157 (361)
                      .+ +.|++++++.+.+      .+++++++||+++.  .+++++++     ..++++++.+..++..|+++..+++ +++
T Consensus        74 ~~~~~g~~~~l~~~~~------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~~~~~~~v~~~~~-g~v  141 (401)
T 2ggo_A           74 KDDIKGTGAAILSAKF------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSNPKDYGVLVLDNQ-NNL  141 (401)
T ss_dssp             CTTCCBSTTTGGGCCC------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSCCSSSCEEEECTT-SSE
T ss_pred             CCCCCChHHHHHHhcc------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCCCcceeEEEECCC-CeE
Confidence            44 5688888776553      23899999999766  45676665     3457788888888888998888876 899


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhc-CceEEEEecceEEEcCCHHHHHHHHH
Q 018060          158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~-~~i~~~~~~~~~~~i~t~~dy~~a~~  231 (361)
                      ..+.|||....+.+.++|+|+|++++++.++..     ......++++.+ .. .++..+..+++|.+++||+||.++++
T Consensus       142 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~  220 (401)
T 2ggo_A          142 SKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNK  220 (401)
T ss_dssp             EEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHH
T ss_pred             EEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHH
Confidence            999999877778899999999999998877421     111124677777 44 47888888889999999999999999


Q ss_pred             HHHHhhh-hcc------------------cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEE
Q 018060          232 LYLDSLR-KKS------------------SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV  292 (361)
Q Consensus       232 ~~l~~~~-~~~------------------~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i  292 (361)
                      .++.++. ...                  ...+.+++.+.++++||+++.|+++|+|+++++||++|.|+++|.|.+++|
T Consensus       221 ~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i  300 (401)
T 2ggo_A          221 WALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVI  300 (401)
T ss_dssp             HHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEE
T ss_pred             HHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEE
Confidence            8877643 111                  111335555566677777777777788877888888888888888888999


Q ss_pred             ccCcEECCCCEEeccEEcCCCEECCCcEEc------------------------CceEECCCeEECCceEEc-------C
Q 018060          293 MRGVRIKKHACISSSIIGWHSTVGQWARVE------------------------NMTILGEDVHVCDEIYSN-------G  341 (361)
Q Consensus       293 ~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~------------------------~~~~ig~~~~v~~~~~i~-------~  341 (361)
                      ++++.|++++.+.+++||+++.||+++.|.                        .+++||++++||+++++.       +
T Consensus       301 ~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~  380 (401)
T 2ggo_A          301 MEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAY  380 (401)
T ss_dssp             CTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTT
T ss_pred             cCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCC
Confidence            999999999999999999999999999987                        258888888888877773       6


Q ss_pred             cEEccCceeecccCCCcccC
Q 018060          342 GVVLPHKEIKSSILKPEIVM  361 (361)
Q Consensus       342 ~~i~~~~~v~~~~~~~~~~~  361 (361)
                      +.|++++.|.+++|++++++
T Consensus       381 ~vi~~gsvv~~~vp~~~~v~  400 (401)
T 2ggo_A          381 ARIYPGAVVNRDVGYGEFFK  400 (401)
T ss_dssp             CEECTTCEECSCBCTTCEEC
T ss_pred             cEECCCCeEccccCCCcEEe
Confidence            77788899999999998864

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=100.00  E-value=2.9e-47  Score=365.30  Aligned_cols=355  Identities=19%  Similarity=0.285  Sum_probs=274.8

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||||+|+||+|+   +||+|+|++|+|||+|+|+++.++|+++++|++++..+++++++.++.+.++.++.+..|.
T Consensus        14 ~vvILAaG~GtRm~~~---~pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~   90 (501)
T 3st8_A           14 AVLVLAAGPGTRMRSD---TPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQD   90 (501)
T ss_dssp             EEEEEECSCCGGGCCS---SCGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred             eEEEECCcCcccCCCC---CCHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            4799999999999995   5999999999999999999999999999999999999999999998777778888899999


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ++.||++|++++++.+.+...+.+++++||. +. ...+..+++.|++.++.+++++.+.++|..||.+..+++ +++..
T Consensus        91 ~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~-g~v~~  169 (501)
T 3st8_A           91 RPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQD-HEVMA  169 (501)
T ss_dssp             SCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred             CCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccc-eeEEe
Confidence            9999999999999999655445899999998 33 445899999999999999999999999999999999987 99999


Q ss_pred             eeecCCC----CCCCeEEEEEEEeCHhhHhhccCC-------CCccccchHHhHHhcCc-eEEEEecceEE--EcCCHHH
Q 018060          160 FVEKPKL----FVGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEGK-LFAMVLPGFWM--DIGQPRD  225 (361)
Q Consensus       160 ~~ek~~~----~~~~~~~~Giyi~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~~-i~~~~~~~~~~--~i~t~~d  225 (361)
                      +.|||..    ...+++++|+|+|+++.|..+...       ...+..|.+..+...+. +..+..+..|.  .+.+..+
T Consensus       170 ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~  249 (501)
T 3st8_A          170 IVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQ  249 (501)
T ss_dssp             EECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHH
T ss_pred             eccccCCChhhccceeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHH
Confidence            9999653    456789999999999988655321       22334566666666654 55555554443  3345555


Q ss_pred             HHHHHHHHHHhhhh-----------ccc------ccccCCcEEecc------e---------------------------
Q 018060          226 YITGLRLYLDSLRK-----------KSS------LKLATGANIVGN------V---------------------------  255 (361)
Q Consensus       226 y~~a~~~~l~~~~~-----------~~~------~~~~~~~~i~~~------~---------------------------  255 (361)
                      +.++...+..+...           ...      ..+.+.+.|.++      +                           
T Consensus       250 l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~  329 (501)
T 3st8_A          250 LAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVR  329 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECS
T ss_pred             HHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEe
Confidence            54443322221111           001      112222222222      2                           


Q ss_pred             ------EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC------
Q 018060          256 ------LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN------  323 (361)
Q Consensus       256 ------~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~------  323 (361)
                            .+++++.+++++++++++.|+++|.||.+|++.+++|++++.|++.+++++++||++|.||+++.+-+      
T Consensus       330 ~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~  409 (501)
T 3st8_A          330 THGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSK  409 (501)
T ss_dssp             EEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSB
T ss_pred             ecccccccccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcc
Confidence                  23334445566666677888888888888888999999999999999999999999999999987743      


Q ss_pred             -ceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          324 -MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       324 -~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                       +++||++|+||.++.+       .++.|+++++|.+++|++++.
T Consensus       410 ~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~~l~  454 (501)
T 3st8_A          410 RRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALA  454 (501)
T ss_dssp             CCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEE
T ss_pred             cCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCCCeE
Confidence             4778888888777665       478889999999999999864

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=100.00  E-value=1.8e-44  Score=344.10  Aligned_cols=335  Identities=22%  Similarity=0.319  Sum_probs=265.2

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      +|||||||.|+||++   ..||+|+|++|+|||+|+++++.++++++++|+++++.+++.+++.+     ++++.  .+.
T Consensus        13 ~~vIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~-----~i~~v--~~~   82 (468)
T 1hm9_A           13 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-----QTEFV--TQS   82 (468)
T ss_dssp             EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS-----SSEEE--ECS
T ss_pred             cEEEEcCCCCccCCC---CCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC-----CcEEE--eCC
Confidence            589999999999986   78999999999999999999999999999999999887777666543     34443  355


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ...|++++++.+++.+.. ..+++++++||+  +...+++++++.|+++++++++++.+..++..|+++..+++ +++..
T Consensus        83 ~~~G~~~sl~~a~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~-g~v~~  160 (468)
T 1hm9_A           83 EQLGTGHAVMMTEPILEG-LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLR  160 (468)
T ss_dssp             SCCCHHHHHHTTHHHHTT-CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred             ccCChHHHHHHHHHHhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCC-CCEEE
Confidence            567999999999988842 234899999999  55677999999998888888888888888889999988876 89999


Q ss_pred             eeecCCC----CCCCeEEEEEEEeCHhhH-hhccCC------CCccccchHHhHHhcC-ceEEEEecceEEE--cCCHHH
Q 018060          160 FVEKPKL----FVGNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEG-KLFAMVLPGFWMD--IGQPRD  225 (361)
Q Consensus       160 ~~ek~~~----~~~~~~~~Giyi~~~~~l-~~l~~~------~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~--i~t~~d  225 (361)
                      +.|||..    ..+.+.++|+|+|+++.+ +.+...      ...+..|+++.++..+ +++++.++++|.+  +++++|
T Consensus       161 ~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~d  240 (468)
T 1hm9_A          161 IVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVA  240 (468)
T ss_dssp             EECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHH
T ss_pred             EEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHH
Confidence            9998752    246789999999999954 554321      1233468888888875 7999999999976  569999


Q ss_pred             HHHHHHHHHHhhhhc----cccccc-CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECC
Q 018060          226 YITGLRLYLDSLRKK----SSLKLA-TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  300 (361)
Q Consensus       226 y~~a~~~~l~~~~~~----~~~~~~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~  300 (361)
                      |.+++..+.......    ....++ ..+.+.+++.|++++.|++++.|++++.||++|.|++++.|.++.|+++|.|+ 
T Consensus       241 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-  319 (468)
T 1hm9_A          241 LATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-  319 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-
Confidence            999987765543211    111122 34677788888888888888888888888888888888888888888888888 


Q ss_pred             CCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCce
Q 018060          301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  349 (361)
Q Consensus       301 ~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~  349 (361)
                      +++|.+++||+++.|++++.|.++++||+++.|++++.+.++.++.++.
T Consensus       320 ~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~  368 (468)
T 1hm9_A          320 NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTK  368 (468)
T ss_dssp             SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCE
T ss_pred             EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcE
Confidence            8888888888888888888888778888888888777765555544443

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=100.00  E-value=2.9e-44  Score=341.89  Aligned_cols=345  Identities=23%  Similarity=0.352  Sum_probs=244.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.|||||||.|+||++   ..||+|+|++|+|||+|+++.|.++++++++|+++++.+.+++++.+.    +  +.+..+
T Consensus         9 ~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~----~--~~~v~~   79 (459)
T 4fce_A            9 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP----S--LNWVLQ   79 (459)
T ss_dssp             EEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-----------CEEEC
T ss_pred             ceEEEECCCCCccCCC---CCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC----C--cEEEeC
Confidence            4699999999999998   789999999999999999999999999999999999878888877652    2  333445


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ....|++++++.+++.+.  +.+++++++||+  +...+++++++.|.+  .+++++..+..++..|+++..+ + +++.
T Consensus        80 ~~~~g~~~~i~~~~~~~~--~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~-g~v~  153 (459)
T 4fce_A           80 AEQLGTGHAMQQAAPHFA--DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDNPSGYGRIVRE-N-GDVV  153 (459)
T ss_dssp             SSCCCHHHHHHHHGGGSC--TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSCCTTSCEEEEE-T-TEEE
T ss_pred             CCCCCcHHHHHHHHHhcC--CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCCCCcccEEEeC-C-CcEE
Confidence            667799999999999884  334899999999  556678999988754  4577777888888899998887 4 8999


Q ss_pred             eeeecCC----CCCCCeEEEEEEEeCHhhHh-hccC------CCCccccchHHhHHhcC-ceEEEEecceE--EEcCCHH
Q 018060          159 KFVEKPK----LFVGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGFW--MDIGQPR  224 (361)
Q Consensus       159 ~~~ek~~----~~~~~~~~~Giyi~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~~~--~~i~t~~  224 (361)
                      .+.|+|.    ...+.+.++|+|+|+++.+. .++.      +...+..|+++.+...+ ++..+..+++|  .+++||+
T Consensus       154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~  233 (459)
T 4fce_A          154 GIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRL  233 (459)
T ss_dssp             EEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHH
T ss_pred             EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHH
Confidence            9999864    23567899999999999664 3321      12234467788887765 68888888655  6799999


Q ss_pred             HHHHHHHHHHHhhhhc-----------------------ccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEE
Q 018060          225 DYITGLRLYLDSLRKK-----------------------SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVV  281 (361)
Q Consensus       225 dy~~a~~~~l~~~~~~-----------------------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i  281 (361)
                      ||..++..+..++...                       ....+++++.|.+++.||+++.|+++|+|. ++.||++|.|
T Consensus       234 Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I  312 (459)
T 4fce_A          234 QLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEI  312 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEe-ccEECCCCEE
Confidence            9999976665443210                       011234444444555556666666666554 4666666666


Q ss_pred             CCCcEEeceEEccCcEECCCCEEe-ccEEcCC----------------------------------CEECCCcEEcC---
Q 018060          282 ESGVRLSRCTVMRGVRIKKHACIS-SSIIGWH----------------------------------STVGQWARVEN---  323 (361)
Q Consensus       282 ~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~----------------------------------~~ig~~~~i~~---  323 (361)
                      +++|.|.++.|+++|.||++++|. +++|+++                                  +.||+++.+.+   
T Consensus       313 ~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~  392 (459)
T 4fce_A          313 SPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDG  392 (459)
T ss_dssp             CSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCS
T ss_pred             CCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEecccc
Confidence            666666666666666666655555 2333333                                  33333322221   


Q ss_pred             ----ceEECCCeEECCceEE-------cCcEEccCceeecccCCCcccC
Q 018060          324 ----MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIVM  361 (361)
Q Consensus       324 ----~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~~  361 (361)
                          +++||++|+||.++.+       .++.|++++.|.+++|+++++.
T Consensus       393 ~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~v~~~~~~~  441 (459)
T 4fce_A          393 ANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENELVI  441 (459)
T ss_dssp             SCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             ccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEccccCCCCEEE
Confidence                3566666666666665       3678888899999999988763

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=100.00  E-value=1.1e-42  Score=330.64  Aligned_cols=333  Identities=21%  Similarity=0.312  Sum_probs=268.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.|||||||.|+||++   ..||+|+|++|+|||+|+++.+.++++++++|+++++.+++++++.++    ++++  ..+
T Consensus         6 ~~aiIlA~G~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~~~--v~~   76 (456)
T 2v0h_A            6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE----QVNW--VLQ   76 (456)
T ss_dssp             EEEEEECCCCCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC----CCEE--EEC
T ss_pred             ceEEEECCCCCcccCC---CCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC----CcEE--EeC
Confidence            3689999999999986   789999999999999999999999999999999998877777776542    3443  345


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ..+.|++++++.+++.+..  .+++++++||+  +...+++++++.|.+  .+++++..+..++..|+.+..+ + +++.
T Consensus        77 ~~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~-g~v~  150 (456)
T 2v0h_A           77 TEQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLDNPTGYGRIIRE-N-GNVV  150 (456)
T ss_dssp             SCCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSSCTTSCEEEEE-T-TEEE
T ss_pred             CCCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecCCCCccceEEEc-C-CcEE
Confidence            5667899999999988842  34899999999  455678999988765  4677777787788889988877 4 8999


Q ss_pred             eeeecCCC----CCCCeEEEEEEEeCHhhH-hhccCC------CCccccchHHhHHhcC-ceEEEEecce--EEEcCCHH
Q 018060          159 KFVEKPKL----FVGNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR  224 (361)
Q Consensus       159 ~~~ek~~~----~~~~~~~~Giyi~~~~~l-~~l~~~------~~~~~~d~l~~l~~~~-~i~~~~~~~~--~~~i~t~~  224 (361)
                      .+.|+|..    ....+.++|+|+|+++.+ +.++..      ...+..|+++.+...+ ++..+..+++  |.+++||+
T Consensus       151 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpe  230 (456)
T 2v0h_A          151 AIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRL  230 (456)
T ss_dssp             EEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHH
T ss_pred             EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHH
Confidence            99998652    235689999999999855 444321      1233467888887765 6888888654  56899999


Q ss_pred             HHHHHHHHHHHhhhhc---cc-cccc-CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060          225 DYITGLRLYLDSLRKK---SS-LKLA-TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  299 (361)
Q Consensus       225 dy~~a~~~~l~~~~~~---~~-~~~~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~  299 (361)
                      ||.++++.+.......   .. ..++ +.+.+++++.|++++.|+++++|++++.||++|.|+++|.|.++.|+++|.|+
T Consensus       231 Dl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~  310 (456)
T 2v0h_A          231 QLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIK  310 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEc
Confidence            9999987665433211   11 1123 36788999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060          300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  348 (361)
Q Consensus       300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~  348 (361)
                      ++++|.+++||+++.|++++.|.++++||+++.||+++.+.++.+..++
T Consensus       311 ~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~  359 (456)
T 2v0h_A          311 PYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGS  359 (456)
T ss_dssp             SSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCEECTTC
T ss_pred             CCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccEECCCC
Confidence            9999999999999999999999988999999999988877655554443

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=100.00  E-value=9.9e-36  Score=264.74  Aligned_cols=230  Identities=21%  Similarity=0.334  Sum_probs=195.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhh---c-------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA---K-------   70 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~---~-------   70 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++|+|+++++.+.+.+++.+...   .       
T Consensus         3 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~   82 (281)
T 3juk_A            3 KKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKE   82 (281)
T ss_dssp             CEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CCHH
T ss_pred             eEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcccch
Confidence            689999999999999999999999999999999999999999999999999999988889988764110   0       


Q ss_pred             ----------cCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-----HHHHHHHHHHcCCceEEE
Q 018060           71 ----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-----FAEMIEFHKAHGGEASIM  135 (361)
Q Consensus        71 ----------~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-----l~~~~~~~~~~~~~~~i~  135 (361)
                                ++.++.+..+..+.|++++++.+.+.+.  + ++|++++||+++..+     ++++++.|.++++ .+++
T Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~--~-~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~  158 (281)
T 3juk_A           83 NALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG--N-EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVA  158 (281)
T ss_dssp             HHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC--S-SCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEE
T ss_pred             hhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC--C-CCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEE
Confidence                      2567777777788899999999999884  2 389999999988888     9999999988776 6666


Q ss_pred             EEEc--cCCCCceeEEEcC--CCC--eEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCC-----CccccchHHhH
Q 018060          136 VTKV--DEPSKYGVVVMEE--STG--KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKI  202 (361)
Q Consensus       136 ~~~~--~~~~~~~~v~~~~--~~~--~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~-----~~~~~d~l~~l  202 (361)
                      +...  +++..||++..++  + +  +|..+.|||.  ...+++.++|+|+|++++|+.+....     .....|+++.+
T Consensus       159 ~~~~~~~~~~~~g~v~~~~~~~-g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~~~e~~l~d~i~~l  237 (281)
T 3juk_A          159 IEEVALEEVSKYGVIRGEWLEE-GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQ  237 (281)
T ss_dssp             EEECCTTTGGGSEEEEEEEEET-TEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCCGGGSCCHHHHHHHH
T ss_pred             EEEechhhcccCCEEEeccCCC-CceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCCCCCceeHHHHHHHH
Confidence            6555  5677899999885  5 7  9999999997  35678999999999999998776431     11226788999


Q ss_pred             HhcCceEEEEecceEEEcCCHHHHHHHHHHHHH
Q 018060          203 ALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLD  235 (361)
Q Consensus       203 ~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~  235 (361)
                      +.++++.++.++++|.|++||++|.++++.++.
T Consensus       238 ~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~  270 (281)
T 3juk_A          238 AKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYK  270 (281)
T ss_dssp             HHHSCCEEEECCSEEEETTSHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHh
Confidence            888899999999999999999999999988775

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=100.00  E-value=4.6e-35  Score=258.56  Aligned_cols=229  Identities=25%  Similarity=0.369  Sum_probs=199.2

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccC-hHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++|+|+++++ .+++.+++.+ ...+++++.+..
T Consensus        25 m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~-~~~~~~~i~~~~  103 (269)
T 4ecm_A           25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS-GQEFGVSFTYRV  103 (269)
T ss_dssp             EEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             cEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh-ccccCceEEEee
Confidence            68999999999999999999999999999999999999999999999999999974 4677788764 334577887777


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      +..+.|++++++.+.+.+.   .+++++++||+++..++.++++.|.++++++++++.+..++..|+++..++  ++|..
T Consensus       104 ~~~~~G~~~al~~a~~~~~---~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~--g~v~~  178 (269)
T 4ecm_A          104 QDKAGGIAQALGLCEDFVG---NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQN--RKIIE  178 (269)
T ss_dssp             CSSCCCHHHHHHTTHHHHT---TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEET--TEEEE
T ss_pred             CCccCcHHHHHHHHHHhcC---CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEcC--CEEEE
Confidence            7778899999999998884   248999999998888899999999988888999988888888999999884  89999


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  234 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l  234 (361)
                      +.|||....+.+.++|+|+|++++|+.+...     ......++++.++..+++.++..+++|.|++||+||.++++.++
T Consensus       179 ~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~  258 (269)
T 4ecm_A          179 IEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALAR  258 (269)
T ss_dssp             EEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTT
T ss_pred             EEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence            9999987778899999999999999877532     12223678889988889999999999999999999999998654


Q ss_pred             H
Q 018060          235 D  235 (361)
Q Consensus       235 ~  235 (361)
                      .
T Consensus       259 ~  259 (269)
T 4ecm_A          259 D  259 (269)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=100.00  E-value=3.3e-33  Score=245.65  Aligned_cols=228  Identities=30%  Similarity=0.545  Sum_probs=180.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhh-ccCcEE----
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-KLGIKI----   75 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~-~~~~~i----   75 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++++|+++++.+.+++++.++.. ..++.+    
T Consensus         3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   82 (259)
T 1tzf_A            3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE   82 (259)
T ss_dssp             CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG
T ss_pred             cEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccccc
Confidence            689999999999999999999999999999999999999999999999999999988889999876321 011221    


Q ss_pred             ---------------EEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEcc
Q 018060           76 ---------------ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD  140 (361)
Q Consensus        76 ---------------~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~  140 (361)
                                     .+..+..+.|++++++.+.+.+.  ..+++++++||+++..++.++++.|.++++.+++..  ..
T Consensus        83 ~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~--~~  158 (259)
T 1tzf_A           83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK--DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTA--TF  158 (259)
T ss_dssp             TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT--TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEE--EC
T ss_pred             cceeeeeccccccceeeeecccccCcHHHHHHHHHhcC--CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEE--ec
Confidence                           12223446799999999998884  234899999999988899999999988777666543  34


Q ss_pred             CCCCceeEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEc
Q 018060          141 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDI  220 (361)
Q Consensus       141 ~~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i  220 (361)
                      ++..|+++..+ + ++|..+.|||... ..+.++|+|+|++++++.+.....++..++++.+++++++.++.++++|.|+
T Consensus       159 ~~~~~g~v~~~-~-g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI  235 (259)
T 1tzf_A          159 PPGRFGALDIQ-A-GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPM  235 (259)
T ss_dssp             CCCCSEEEEEE-T-TEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEEC
T ss_pred             CCCCccEEEEc-C-CEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhcccccccHHHHHHHHHHcCCEEEEEeCcEEEeC
Confidence            56789998888 4 8999999998643 5689999999999999887554445667888888888899999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 018060          221 GQPRDYITGLRLYLD  235 (361)
Q Consensus       221 ~t~~dy~~a~~~~l~  235 (361)
                      ++++||.++++.+..
T Consensus       236 ~t~~d~~~a~~~~~~  250 (259)
T 1tzf_A          236 DTLRDKVYLEGLWEK  250 (259)
T ss_dssp             CSHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999887654

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=100.00  E-value=7.8e-33  Score=248.53  Aligned_cols=229  Identities=27%  Similarity=0.363  Sum_probs=190.4

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhh---h--------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE---A--------   69 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~---~--------   69 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+++.+..   +        
T Consensus         9 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~   88 (302)
T 2e3d_A            9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR   88 (302)
T ss_dssp             CEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----C
T ss_pred             cEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccch
Confidence            68999999999999999999999999999999999999999999999999999998888888886411   0        


Q ss_pred             ----------ccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec-----c---CHHHHHHHHHHcCCc
Q 018060           70 ----------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE-----Y---PFAEMIEFHKAHGGE  131 (361)
Q Consensus        70 ----------~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~-----~---~l~~~~~~~~~~~~~  131 (361)
                                ..+.++.+..+..+.|++++++.+.+.+.  + +++++++||+++.     .   +++++++.|++.+. 
T Consensus        89 ~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~--~-~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-  164 (302)
T 2e3d_A           89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--D-EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-  164 (302)
T ss_dssp             HHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC--S-SCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-
T ss_pred             hhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC--C-CcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-
Confidence                      13567777777778899999999998883  2 3899999999776     2   79999999987766 


Q ss_pred             eEEEEEEccCCCCceeEEEc----CCCC---eEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCC-----Cccccc
Q 018060          132 ASIMVTKVDEPSKYGVVVME----ESTG---KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKE  197 (361)
Q Consensus       132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~-----~~~~~d  197 (361)
                      .++++.+.+++..||++..+    ++ +   +|..+.|||.  ...+.+.++|+|+|++++++.+....     ..+..+
T Consensus       165 ~~i~~~~~~~~~~yg~v~~~~~~~~~-g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d  243 (302)
T 2e3d_A          165 SQIMVEPVADVTAYGVVDCKGVELAP-GESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTD  243 (302)
T ss_dssp             EEEEEEECSCGGGSEEEECTTCCCCT-TCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCCC----CCCHHH
T ss_pred             cEEEEEEccCCCCccEEEecccccCC-CCceeEEEEEECCCCCccccceEEEEEEEECHHHHHHHHhhCCCCCCceehHH
Confidence            67777777777889998863    33 6   8999999986  34567899999999999998875421     122257


Q ss_pred             hHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060          198 VFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  234 (361)
Q Consensus       198 ~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l  234 (361)
                      +++.++.++++.++.++++|.|++||++|.+++..++
T Consensus       244 ~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~  280 (302)
T 2e3d_A          244 AIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG  280 (302)
T ss_dssp             HHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHH
Confidence            7888887789999999999999999999999996554

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=100.00  E-value=1.2e-32  Score=245.30  Aligned_cols=230  Identities=25%  Similarity=0.384  Sum_probs=191.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcc-cChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~-~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|+++ ++.+.+++++.+ ...+++++.+..
T Consensus         4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-g~~~g~~i~~~~   82 (296)
T 1mc3_A            4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAE   82 (296)
T ss_dssp             CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             cEEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc-ccccCceEEEec
Confidence            899999999999999999999999999999999999999999999999999886 466778888865 234577777777


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      +..+.|++++++.+.+.+.  + ++++++.||.+ ...++.++++.|.+.+..++++..+..++..||++..+++ +++.
T Consensus        83 ~~~~~G~~~al~~a~~~i~--~-~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~-g~v~  158 (296)
T 1mc3_A           83 QPSPDGLAQAFIIGETFLN--G-EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAI  158 (296)
T ss_dssp             CSSCCCSTHHHHHTHHHHT--T-SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EEEE
T ss_pred             cCCCCCHHHHHHHHHHHhC--C-CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCC-CcEE
Confidence            7778899999999998883  2 37888889994 4567999999987666677888888888989999998876 8999


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcCceEEEEec-c-eEEEcCCHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP-G-FWMDIGQPRDYITGLR  231 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~i~~~~~~-~-~~~~i~t~~dy~~a~~  231 (361)
                      ++.|||....+++.++|+|+|++++++.+..-     ......|+++.+++.+.+.++.+. + .|.|++|++||.+++.
T Consensus       159 ~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~  238 (296)
T 1mc3_A          159 SLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST  238 (296)
T ss_dssp             ECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHH
T ss_pred             EEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCccccCCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHH
Confidence            99999976777899999999999998776431     111225677777888888877775 6 4999999999999987


Q ss_pred             HHHH
Q 018060          232 LYLD  235 (361)
Q Consensus       232 ~~l~  235 (361)
                      .+..
T Consensus       239 ~~~~  242 (296)
T 1mc3_A          239 FVQT  242 (296)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=100.00  E-value=2.5e-32  Score=243.19  Aligned_cols=230  Identities=24%  Similarity=0.389  Sum_probs=190.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcc-cChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~-~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|+++ ++.+.+++++.+ .+.+++++.+..
T Consensus         4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~-g~~~g~~i~~~~   82 (295)
T 1lvw_A            4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-GSQFGVRFSYRV   82 (295)
T ss_dssp             CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTSEEEEEE
T ss_pred             eEEEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh-ccccCceEEEee
Confidence            899999999999999999999999999999999999999999999999999886 466778888865 234577777777


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      +..+.|++++++.+.+.+.  + ++++++.||. +...++.++++.|.+.+..++++..+..++..|+++..+++ +++.
T Consensus        83 ~~~~~G~~~al~~a~~~i~--~-~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~-g~v~  158 (295)
T 1lvw_A           83 QEEPRGIADAFIVGKDFIG--D-SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVI  158 (295)
T ss_dssp             CSSCCCGGGHHHHTHHHHT--T-SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTT-SBEE
T ss_pred             CCCCCChHHHHHHHHHHhC--C-CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCC-CcEE
Confidence            7777899999999998883  2 3788888999 44668999999997766677888888888889999999876 8999


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccC-----CCCccccchHHhHHhcCceEEEEec-c-eEEEcCCHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIEL-----RPTSIEKEVFPKIALEGKLFAMVLP-G-FWMDIGQPRDYITGLR  231 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~-----~~~~~~~d~l~~l~~~~~i~~~~~~-~-~~~~i~t~~dy~~a~~  231 (361)
                      ++.|||....+++.++|+|+|++++++.+..     +......|+++.++..+.+.++.+. + .|.|++|++||.+++.
T Consensus       159 ~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~  238 (295)
T 1lvw_A          159 SIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS  238 (295)
T ss_dssp             EEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHH
T ss_pred             EEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCcccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHH
Confidence            9999997667789999999999999876642     1111225677777888888777775 6 5999999999999987


Q ss_pred             HHHH
Q 018060          232 LYLD  235 (361)
Q Consensus       232 ~~l~  235 (361)
                      .+..
T Consensus       239 ~~~~  242 (295)
T 1lvw_A          239 FIET  242 (295)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=100.00  E-value=3.3e-32  Score=242.46  Aligned_cols=230  Identities=24%  Similarity=0.375  Sum_probs=191.0

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|++.+ +.+.+++++.+ ...+++++.+..
T Consensus         3 ~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-g~~~g~~i~~~~   81 (293)
T 1fxo_A            3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQYAV   81 (293)
T ss_dssp             EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             ceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc-ccccCceEEEee
Confidence            4799999999999999999999999999999999999999999999999988754 66778888875 234577777777


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      +..+.|++++++.+.+.+.  + ++++++.||.+ ...++.++++.|.+.+..++++..+..++..||++..+++ +++.
T Consensus        82 ~~~~~G~~~al~~a~~~i~--~-~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~-g~v~  157 (293)
T 1fxo_A           82 QPSPDGLAQAFLIGESFIG--N-DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAI  157 (293)
T ss_dssp             CSSCCCGGGHHHHTHHHHT--T-SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTT-SCEE
T ss_pred             CCCCCCHHHHHHHHHHHhC--C-CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCC-CcEE
Confidence            7778899999999998883  2 37888899994 4568999999997776677888888888889999999876 8999


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccC-----CCCccccchHHhHHhcCceEEEEec-c-eEEEcCCHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIEL-----RPTSIEKEVFPKIALEGKLFAMVLP-G-FWMDIGQPRDYITGLR  231 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~-----~~~~~~~d~l~~l~~~~~i~~~~~~-~-~~~~i~t~~dy~~a~~  231 (361)
                      ++.|||....+++.++|+|+|++++++.+..     +......|+++.+++.+.+.++... + .|.|++||+||.+++.
T Consensus       158 ~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~  237 (293)
T 1fxo_A          158 SLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ  237 (293)
T ss_dssp             EEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHH
T ss_pred             EEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCcccCCceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHH
Confidence            9999987667789999999999999877642     1111225778888888888877775 6 5999999999999987


Q ss_pred             HHHH
Q 018060          232 LYLD  235 (361)
Q Consensus       232 ~~l~  235 (361)
                      .+..
T Consensus       238 ~~~~  241 (293)
T 1fxo_A          238 FIAT  241 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=100.00  E-value=1.5e-32  Score=245.96  Aligned_cols=231  Identities=22%  Similarity=0.326  Sum_probs=169.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhh------------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------   68 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~------------   68 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++|+|++++..+.+.+++.+..            
T Consensus        15 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~   94 (297)
T 2ux8_A           15 RKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKS   94 (297)
T ss_dssp             CEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTTTCC
T ss_pred             cEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhccch
Confidence            68999999999999999999999999999999999999999999999999999988788888875410            


Q ss_pred             -------hccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec---cCHHHHHHHHHHcCCceEEEEEE
Q 018060           69 -------AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE---YPFAEMIEFHKAHGGEASIMVTK  138 (361)
Q Consensus        69 -------~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~---~~l~~~~~~~~~~~~~~~i~~~~  138 (361)
                             ...+.++.+..+..+.|++++++.+.+.+.  + +++++++||+++.   .+++++++.|.+.+. .++.+.+
T Consensus        95 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~--~-~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~  170 (297)
T 2ux8_A           95 LDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG--D-EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEE  170 (297)
T ss_dssp             GGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC--S-SCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-
T ss_pred             hhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC--C-CcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEe
Confidence                   002445656666677899999999998883  2 4899999999876   469999999987665 4555444


Q ss_pred             c--cCCCCceeEEEcC-CCC--eEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCC-----CccccchHHhHHhcC
Q 018060          139 V--DEPSKYGVVVMEE-STG--KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEG  206 (361)
Q Consensus       139 ~--~~~~~~~~v~~~~-~~~--~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~  206 (361)
                      .  +++..||++..++ +.+  +|..+.|||.  ...+.+.++|+|+|++++++.+....     .....++++.+++++
T Consensus       171 ~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~~~  250 (297)
T 2ux8_A          171 VPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGDQ  250 (297)
T ss_dssp             ----------CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHHHHHHHTC--------CCTTGGGGTTTS
T ss_pred             cCcccCCCCCeEEecccCCCceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhhCCCCCCeeEHHHHHHHHHhcC
Confidence            3  4566788887653 225  8999999985  34456789999999999988775321     122257788888888


Q ss_pred             ceEEEEecceEEEcCCHHHHHHHHHHHHH
Q 018060          207 KLFAMVLPGFWMDIGQPRDYITGLRLYLD  235 (361)
Q Consensus       207 ~i~~~~~~~~~~~i~t~~dy~~a~~~~l~  235 (361)
                      ++.++.++++|.|++||+||.+++..++.
T Consensus       251 ~v~~~~~~~~w~dIgt~~dl~~a~~~~~~  279 (297)
T 2ux8_A          251 PFHGVTFQGTRYDCGDKAGFIQANLAVAL  279 (297)
T ss_dssp             CEEEEECSSEEEETTSHHHHHHHHHHHHH
T ss_pred             CEEEEEecceEEeCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999976654

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=5.8e-32  Score=242.31  Aligned_cols=228  Identities=17%  Similarity=0.214  Sum_probs=187.7

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCcccee--CCcchHHHHHHHHHHcCCCEEEEEcccC-hHHHHHHHHHhhhccCcEEEE
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEF--ANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIIC   77 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl--~g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~   77 (361)
                      |++||||||.|+||+|     ||+|+|+  +|+|||+|+++.+.++|+++++|++++. .+.+++++.+. ..++.++.+
T Consensus         6 ~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~-~~~~~~i~~   79 (303)
T 3pnn_A            6 PTLFVLAAGMGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTK-YEGRIPVEL   79 (303)
T ss_dssp             CEEEEECTTCBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHH-HTTTSCEEE
T ss_pred             eEEEEECCCCcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHH-hccCCcEEE
Confidence            4799999999999998     7999999  5999999999999999999999999997 47899888752 233455555


Q ss_pred             ecCC---------------CCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHH---cCCceEEEEEE
Q 018060           78 SQET---------------EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKA---HGGEASIMVTK  138 (361)
Q Consensus        78 ~~~~---------------~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~---~~~~~~i~~~~  138 (361)
                      ..+.               .+.|++++++.+.+.+  .  ++|+|++||+++..+ ++++++.|.+   +++++++++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i--~--~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~  155 (303)
T 3pnn_A           80 VFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI--R--EPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYR  155 (303)
T ss_dssp             EECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC--C--SCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred             EecccccccccccccccccccCCcHHHHHHHHHhc--C--CCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEE
Confidence            5544               5689999999999988  2  289999999988776 8999999876   45778888888


Q ss_pred             ccCC-CCc-----eeEEEcCCCCeEeeeeecCCC-------------------CCCCeEEEEEEEeCHhhHhhccC----
Q 018060          139 VDEP-SKY-----GVVVMEESTGKVEKFVEKPKL-------------------FVGNKINAGIYLLNPAVLDRIEL----  189 (361)
Q Consensus       139 ~~~~-~~~-----~~v~~~~~~~~v~~~~ek~~~-------------------~~~~~~~~Giyi~~~~~l~~l~~----  189 (361)
                      ..++ ..|     |++.++++ ++|.++.|||..                   ..++++++|+|+|++++|+.+..    
T Consensus       156 ~~~~~~~~g~~~~G~v~~d~~-g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~  234 (303)
T 3pnn_A          156 VGNTLSESGGVSRGVCQVDEK-HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFIN  234 (303)
T ss_dssp             GGGSCBTTBCEEEEEEEECTT-SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHH
T ss_pred             CCCccCccCceeeeeEeeCCC-CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHHHHHHHHH
Confidence            8777 667     57888876 899999999853                   35789999999999999987742    


Q ss_pred             ---------CCCccccchHHhHHhcC--ceEEEEecceEEEcCCHHHHHHHHHHHHHhhhh
Q 018060          190 ---------RPTSIEKEVFPKIALEG--KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK  239 (361)
Q Consensus       190 ---------~~~~~~~d~l~~l~~~~--~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~  239 (361)
                               +...+..|+++.++.++  ++.++..+++|.|+++|+||.++++.+......
T Consensus       235 ~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~~~~  295 (303)
T 3pnn_A          235 FLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELTEA  295 (303)
T ss_dssp             HHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHHHHc
Confidence                     12223357888888887  699999999999999999999999877654433

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=100.00  E-value=2.1e-31  Score=241.00  Aligned_cols=231  Identities=23%  Similarity=0.329  Sum_probs=184.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhh------------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------   68 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~------------   68 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++|+|++++..+.+.+++....            
T Consensus        13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~~   92 (323)
T 2pa4_A           13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKT   92 (323)
T ss_dssp             CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTCH
T ss_pred             eEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhccchh
Confidence            78999999999999999999999999999999999999999999999999999998788887765310            


Q ss_pred             -------h-ccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--cCHHHHHHHHHHcCCceEEEEEE
Q 018060           69 -------A-KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMVTK  138 (361)
Q Consensus        69 -------~-~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--~~l~~~~~~~~~~~~~~~i~~~~  138 (361)
                             . ..+.++.+..+....|++++++.+...+.. +.+.|++++||+++.  .++.++++.|.+.+. .++.+.+
T Consensus        93 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~-~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~  170 (323)
T 2pa4_A           93 DQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDD-DEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVE  170 (323)
T ss_dssp             HHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCS-SCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEE
T ss_pred             hhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcC-CCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEE
Confidence                   0 024566666666778999999999988842 222499999999776  469999999887654 4555555


Q ss_pred             c--cCCCCceeEEEc----CCCC--eEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCC----Ccc-ccchHHhHH
Q 018060          139 V--DEPSKYGVVVME----ESTG--KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP----TSI-EKEVFPKIA  203 (361)
Q Consensus       139 ~--~~~~~~~~v~~~----~~~~--~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~----~~~-~~d~l~~l~  203 (361)
                      .  +++..||++..+    ++ +  +|..+.|||.  ...+.+.++|+|+|++++|+.+....    ..+ ..++++.++
T Consensus       171 ~~~~~~~~yg~v~~d~~~~~~-~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~  249 (323)
T 2pa4_A          171 VSEADVSKYGIFEIEADTKDS-DVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLI  249 (323)
T ss_dssp             CCGGGGGGSEEEEEEECCSST-TEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHH
T ss_pred             ecccccCCccEEEeCCcccCC-CceeEEEEEECCCCccccccEEEEEEEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHH
Confidence            4  456689998876    43 4  9999999985  34567899999999999998775321    112 257888888


Q ss_pred             hc-CceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060          204 LE-GKLFAMVLPGFWMDIGQPRDYITGLRLYL  234 (361)
Q Consensus       204 ~~-~~i~~~~~~~~~~~i~t~~dy~~a~~~~l  234 (361)
                      .+ .++.++.++++|.|++||+||.+++..++
T Consensus       250 ~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~  281 (323)
T 2pa4_A          250 DEGHPVHIVIHQGKRHDLGNPGGYIPACVDFG  281 (323)
T ss_dssp             HTTCCEEEEECCSEEEECSSHHHHHHHHHHHH
T ss_pred             HcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHh
Confidence            77 67999999999999999999999986655

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.97  E-value=1.8e-31  Score=233.13  Aligned_cols=219  Identities=20%  Similarity=0.309  Sum_probs=170.2

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEcccChHHHHHHHHHhhhccCc--EEEEec
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEAKLGI--KIICSQ   79 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~-~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~--~i~~~~   79 (361)
                      +||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.+ +|++++++++++..+ +++++.+..+.++.  ...+..
T Consensus         2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (255)
T 4evw_A            2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYIAEL   80 (255)
T ss_dssp             EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEEEEE
T ss_pred             EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCCCCceEEEe
Confidence            79999999999999999999999999999999999999999 799999999998755 55555543222221  113344


Q ss_pred             CCCCCCCchHHHHHHhhccC---CCCCcEEEEeCCeee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCC
Q 018060           80 ETEPLGTAGPLALARDKLID---DTGEPFFVLNSDVIS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG  155 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~---~~~~~~lv~~~D~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~  155 (361)
                      +..+.|++++++.+.+.+..   ..+++|+|++||+++ +.++.++     ..++++++++.+..++ .||++..+++ |
T Consensus        81 ~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~p-~yG~v~~d~~-g  153 (255)
T 4evw_A           81 HTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGGD-NWSFAKPEHA-G  153 (255)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCSS-CSCEEEESST-T
T ss_pred             CCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCCC-ceeEEEECCC-C
Confidence            66788999999999998830   123389999999987 4556543     2455678888887765 9999999876 7


Q ss_pred             --eEeeeeecCCCCCCCeEEEEEEEeCHh-hH-----hhccC------CCCccccchHHhHHhcC-ceEEEEec-ceEEE
Q 018060          156 --KVEKFVEKPKLFVGNKINAGIYLLNPA-VL-----DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLP-GFWMD  219 (361)
Q Consensus       156 --~v~~~~ek~~~~~~~~~~~Giyi~~~~-~l-----~~l~~------~~~~~~~d~l~~l~~~~-~i~~~~~~-~~~~~  219 (361)
                        +|.++.||  ...++++++|+|+|++. .+     +.+..      +...+..|+++.++.++ .+.++.++ ++|.|
T Consensus       154 ~~~V~~i~EK--~~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~d  231 (255)
T 4evw_A          154 STKVIQTAEK--NPISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIF  231 (255)
T ss_dssp             CCBEEEEESS--SCSSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEE
T ss_pred             CeEEEEEEec--cCccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEE
Confidence              99999999  34578999999999986 22     22222      23344568999998876 58888885 89999


Q ss_pred             cCCHHHHHHHHH
Q 018060          220 IGQPRDYITGLR  231 (361)
Q Consensus       220 i~t~~dy~~a~~  231 (361)
                      +++|++|.++.+
T Consensus       232 igt~~~l~~~~~  243 (255)
T 4evw_A          232 CGVPDEYTDFLR  243 (255)
T ss_dssp             CCSHHHHHHHHH
T ss_pred             CCCHHHHHHHHh
Confidence            999999998865

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.96  E-value=1.5e-29  Score=227.38  Aligned_cols=224  Identities=21%  Similarity=0.320  Sum_probs=151.7

Q ss_pred             CeEEEEecCCCcccCCCCC-CCCCcccee-CCcchHHHHHHHHHHcCCCEEEEEcccCh-HHHHHHHHHhhhccCc-EEE
Q 018060            1 MKALILVGGFGTRLRPLTL-SVPKPLVEF-ANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGI-KII   76 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~-~~pK~llpl-~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~-~i~   76 (361)
                      |+|||||||.|+||+|+|. ..||+|+|+ +|+|||+|+++++.++ +++++|++++.. +.+.+++.+.   +++ ++.
T Consensus         5 ~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~---~~~~~~~   80 (308)
T 2qh5_A            5 IKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE---IKNKSVG   80 (308)
T ss_dssp             EEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT---CSSCEEE
T ss_pred             cEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh---hCCCccE
Confidence            5799999999999999996 799999999 5999999999999999 999999999864 5677777651   354 555


Q ss_pred             EecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHH---HHHcCCceEEEEEEccCCCCceeEEEc
Q 018060           77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEF---HKAHGGEASIMVTKVDEPSKYGVVVME  151 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~-~~~-l~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~v~~~  151 (361)
                      +..+..+.|++.+++.+...+  ..++.+++++||+++ +.+ +.++++.   |.++++.+++.+.+..++..||++..+
T Consensus        81 ~i~~~~~~gt~~al~~a~~~l--~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d  158 (308)
T 2qh5_A           81 FLLESLSKNTANAIALSALMS--DKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESP  158 (308)
T ss_dssp             EEEESSCCCHHHHHHHHHHTS--CTTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECS
T ss_pred             EEeCCCCCChHHHHHHHHHHh--CCCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEC
Confidence            555666789999999999888  323359999999977 555 8899887   666666778877777777789999877


Q ss_pred             CCCCeEeeeeecCCCCC--------CCeEEEEEEEeCHhhH-hhccCC---------------C------Ccc---ccch
Q 018060          152 ESTGKVEKFVEKPKLFV--------GNKINAGIYLLNPAVL-DRIELR---------------P------TSI---EKEV  198 (361)
Q Consensus       152 ~~~~~v~~~~ek~~~~~--------~~~~~~Giyi~~~~~l-~~l~~~---------------~------~~~---~~d~  198 (361)
                      ++ ++|..|.|||....        +.++++|+|+|+++.| +.+...               .      ..+   ..++
T Consensus       159 ~~-~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  237 (308)
T 2qh5_A          159 NG-LDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKS  237 (308)
T ss_dssp             SS-SBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHH
T ss_pred             CC-CEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHH
Confidence            54 89999999986321        4689999999999875 333200               0      111   1244


Q ss_pred             HHh---------HHhc-CceEEEEecceEEEcCCHHHHHHHHH
Q 018060          199 FPK---------IALE-GKLFAMVLPGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       199 l~~---------l~~~-~~i~~~~~~~~~~~i~t~~dy~~a~~  231 (361)
                      ++.         ++.+ .++.++..+++|.|++||++|.+++.
T Consensus       238 ~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~  280 (308)
T 2qh5_A          238 MQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAA  280 (308)
T ss_dssp             HHTSCCCCHHHHTTTTCSCEEEEECCSCCBC------------
T ss_pred             HhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhh
Confidence            432         4444 57999999999999999999999875

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.95  E-value=4.2e-27  Score=205.33  Aligned_cols=220  Identities=20%  Similarity=0.222  Sum_probs=171.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .|||||+|.|+|| |     ||+|+|++|+|||+|+++.+.++++++|+|+++  .+.+++++.++    ++++.+..+.
T Consensus         4 ~aiIlA~G~stRl-p-----~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~~----g~~v~~~~~~   71 (252)
T 3oam_A            4 TVVIPARYQSTRL-P-----GKPLADIGGKPMIQWVYEQAMQAGADRVIIATD--DERVEQAVQAF----GGVVCMTSPN   71 (252)
T ss_dssp             EEEEECCCCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT----TCEEEECCTT
T ss_pred             EEEEecCcCCCCC-C-----CcceeeECCEEHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHHc----CCEEEEcCCC
Confidence            5899999999999 4     799999999999999999999999999999985  36788887654    6778777666


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCc-----eeEEEcCCC
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKY-----GVVVMEEST  154 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~v~~~~~~  154 (361)
                      .+.|+++ +..+...+...+.+.+++++||.  +...+++++++.|.+++.++++++.+..++..|     +.+..|++ 
T Consensus        72 ~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~-  149 (252)
T 3oam_A           72 HQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKS-  149 (252)
T ss_dssp             CCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTT-
T ss_pred             CCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCC-
Confidence            6778876 55555555211345899999998  445679999999988878889998888877766     88888886 


Q ss_pred             CeEeeeeecCCC-------------CCCCeEEEEEEEeCHhhHhhccCC-CCcccc----chHHhHHhcCceEEEEec-c
Q 018060          155 GKVEKFVEKPKL-------------FVGNKINAGIYLLNPAVLDRIELR-PTSIEK----EVFPKIALEGKLFAMVLP-G  215 (361)
Q Consensus       155 ~~v~~~~ek~~~-------------~~~~~~~~Giyi~~~~~l~~l~~~-~~~~~~----d~l~~l~~~~~i~~~~~~-~  215 (361)
                      |+++.|.++|-.             ....+.++|+|+|++++|+.+... +..++.    +.+..+-...++.++..+ .
T Consensus       150 g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~le~lr~l~~G~~i~~~~~~~~  229 (252)
T 3oam_A          150 GYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEA  229 (252)
T ss_dssp             SBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSC
T ss_pred             CeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccccchhHHHHHHHCCCeEEEEEecCC
Confidence            999999988632             235689999999999999887533 233322    334443344578887664 4


Q ss_pred             eEEEcCCHHHHHHHHHHHHH
Q 018060          216 FWMDIGQPRDYITGLRLYLD  235 (361)
Q Consensus       216 ~~~~i~t~~dy~~a~~~~l~  235 (361)
                      .|.+++||+||.++++.+..
T Consensus       230 ~~~~idt~~dl~~a~~~~~~  249 (252)
T 3oam_A          230 PPAGVDTPEDLEVVRRIVAE  249 (252)
T ss_dssp             CCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHh
Confidence            78999999999999876643

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.95  E-value=1.4e-26  Score=202.27  Aligned_cols=212  Identities=22%  Similarity=0.376  Sum_probs=158.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++++|++++..+.+.++...|    ++.+.....
T Consensus        26 ~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~----~~~iv~~~~  101 (254)
T 1jyk_A           26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKY----GVRLVFNDK  101 (254)
T ss_dssp             CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHHH----CCEEEECTT
T ss_pred             ceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhC----CcEEEECCC
Confidence            5799999999999999999999999999999999999999999999999999998766666554443    566655555


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCCceEEEEEEccCC-CCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v~  158 (361)
                      ....|++++++.+.+.+  .   ++++++||+++..+ +.+++    +.  . ..++....++ ..|+++ .+++ |+|.
T Consensus       102 ~~~~g~~~al~~a~~~~--~---~~lv~~~D~~~~~~~~~~~~----~~--~-~~~t~~~~~~~~~~~v~-~d~~-g~v~  167 (254)
T 1jyk_A          102 YADYNNFYSLYLVKEEL--A---NSYVIDADNYLFKNMFRNDL----TR--S-TYFSVYREDCTNEWFLV-YGDD-YKVQ  167 (254)
T ss_dssp             TTTSCTHHHHHTTGGGC--T---TEEEEETTEEESSCCCCSCC----CS--E-EEEECEESSCSSCCEEE-ECTT-CBEE
T ss_pred             ccCCCcHHHHHHHHHHC--C---CEEEEeCCcccCHHHHHHHH----hC--C-ceEEEEcccCCCCeEEE-ECCC-CeEE
Confidence            45678899999888777  2   58899999976544 33332    11  2 2222223344 357755 6765 8999


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhc----c---CC---CCccccchHHhHHhcCceEEEEec-ceEEEcCCHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRI----E---LR---PTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYI  227 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l----~---~~---~~~~~~d~l~~l~~~~~i~~~~~~-~~~~~i~t~~dy~  227 (361)
                      .+.|+|.   ..+.++|+|+|+++.++.|    +   ++   ...+..|+++.+....++.++.++ ++|.+|+|++||.
T Consensus       168 ~~~e~~~---~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~  244 (254)
T 1jyk_A          168 DIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYR  244 (254)
T ss_dssp             EEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHH
T ss_pred             EEEECCC---CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHH
Confidence            9999753   4578999999998744322    1   11   223345667777777789988887 7999999999999


Q ss_pred             HHHHHH
Q 018060          228 TGLRLY  233 (361)
Q Consensus       228 ~a~~~~  233 (361)
                      ++++.+
T Consensus       245 ~a~~~l  250 (254)
T 1jyk_A          245 KLEEIL  250 (254)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.94  E-value=2.3e-27  Score=214.83  Aligned_cols=222  Identities=23%  Similarity=0.314  Sum_probs=163.3

Q ss_pred             CeEEEEecCCCcccCCCC-CCCCCccceeCC-cchHHHHHHHHHHc-CCCEEEEEcccC-hHHHHHHHHHhhhccCcEEE
Q 018060            1 MKALILVGGFGTRLRPLT-LSVPKPLVEFAN-KPMILHQIEALKAV-GVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKII   76 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt-~~~pK~llpl~g-~pli~~~l~~l~~~-gi~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~   76 (361)
                      |++||||||.|+||+|+| ...||+|+|++| +|||+|+++++..+ ++++++|++++. .+.+.+++.+...   ..+ 
T Consensus         2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~---~~i-   77 (336)
T 2x65_A            2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPD---ENI-   77 (336)
T ss_dssp             CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCG---GGE-
T ss_pred             eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcccc---ceE-
Confidence            799999999999999998 789999999999 99999999999997 799999999986 4567777765311   223 


Q ss_pred             EecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc--CHHHH----HHHHHHcCCceEEEEEEccCCCCceeEEE
Q 018060           77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY--PFAEM----IEFHKAHGGEASIMVTKVDEPSKYGVVVM  150 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~--~l~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~v~~  150 (361)
                       ..++.+.|++.++..+...+  ..++.+++++||+++..  ++.++    ++.|++++..+++...+......||++..
T Consensus        78 -i~e~~~~gta~ai~~a~~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~  154 (336)
T 2x65_A           78 -IAEPMKKNTAPACFIGTKLA--DDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEI  154 (336)
T ss_dssp             -EEESSCCCHHHHHHHHHTTS--CTTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEE
T ss_pred             -EeCCCCCCcHHHHHHHHHhh--CCCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEE
Confidence             23445679999999888765  33347999999997643  44444    44466545566666656555578999987


Q ss_pred             cCC----CCeEeeeeecCCCCC--------CCeEEEEEEEeCHhhH-hhccC-CCC-------------ccccchHHh--
Q 018060          151 EES----TGKVEKFVEKPKLFV--------GNKINAGIYLLNPAVL-DRIEL-RPT-------------SIEKEVFPK--  201 (361)
Q Consensus       151 ~~~----~~~v~~~~ek~~~~~--------~~~~~~Giyi~~~~~l-~~l~~-~~~-------------~~~~d~l~~--  201 (361)
                      +++    .++|..|.|||....        ..++++|+|+|+++.+ +.+.. .+.             ++..+.++.  
T Consensus       155 ~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~  234 (336)
T 2x65_A          155 GEELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVP  234 (336)
T ss_dssp             EEEEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSC
T ss_pred             CCccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCc
Confidence            642    168999999987321        2478999999999876 44421 110             122344443  


Q ss_pred             -------HHhc-CceEEEEecceEEEcCCHHHHHHH
Q 018060          202 -------IALE-GKLFAMVLPGFWMDIGQPRDYITG  229 (361)
Q Consensus       202 -------l~~~-~~i~~~~~~~~~~~i~t~~dy~~a  229 (361)
                             ++.+ .++++++.+++|.|++++++|.++
T Consensus       235 ~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~  270 (336)
T 2x65_A          235 SISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI  270 (336)
T ss_dssp             CCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred             cccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence                   3333 579999999999999999999888

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.93  E-value=4.2e-25  Score=191.99  Aligned_cols=215  Identities=22%  Similarity=0.236  Sum_probs=158.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .|||||+|.|+||+      ||+|+|++|||||+|+++.+.++++++|+|+++  .+.+++++.++    +.++.+..+.
T Consensus        11 ~aIIlA~G~stRl~------~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~~----g~~v~~~~~~   78 (256)
T 3tqd_A           11 RVIIPARFDSTRLP------GKALVDIAGKPMIQHVYESAIKSGAEEVVIATD--DKRIRQVAEDF----GAVVCMTSSD   78 (256)
T ss_dssp             EEEEECCCC---CT------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT----TCEEEECCTT
T ss_pred             eEEEEcCCCCCCCC------CCCeeeECCchHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHHc----CCeEEEeCCC
Confidence            59999999999994      799999999999999999999999999999886  36777777654    6777766666


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHc-CCceEEEEEEcc------CCCCceeEEEcC
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAH-GGEASIMVTKVD------EPSKYGVVVMEE  152 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~-~~~~~i~~~~~~------~~~~~~~v~~~~  152 (361)
                      ...|+.. +..+...+...+.+.++++.||. +. ...++++++.+.++ +..+++++.+..      ++.... +..|.
T Consensus        79 ~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vk-vv~d~  156 (256)
T 3tqd_A           79 HQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTK-VVLNR  156 (256)
T ss_dssp             CCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCE-EEECT
T ss_pred             CCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccE-EEECC
Confidence            6667654 67777776322345899999999 33 45689999998875 445666777653      333333 55677


Q ss_pred             CCCeEeeeeecCCCC--------------CCCeEEEEEEEeCHhhHhhccCC-CCcccc----chHHhHHhcCceEEEEe
Q 018060          153 STGKVEKFVEKPKLF--------------VGNKINAGIYLLNPAVLDRIELR-PTSIEK----EVFPKIALEGKLFAMVL  213 (361)
Q Consensus       153 ~~~~v~~~~ek~~~~--------------~~~~~~~Giyi~~~~~l~~l~~~-~~~~~~----d~l~~l~~~~~i~~~~~  213 (361)
                      + |+++.|.++|...              .+.+...|+|.|++++++.+..- +..++.    +.++.|-...++.++..
T Consensus       157 ~-g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~~e~leqlr~le~G~~i~~~~~  235 (256)
T 3tqd_A          157 R-NYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVA  235 (256)
T ss_dssp             T-SBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCCEEEEC
T ss_pred             C-CEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccchhhhHHHHHHHCCCeEEEEEe
Confidence            6 9999999987521              14689999999999999987532 333332    34555555567999998


Q ss_pred             cce-EEEcCCHHHHHHHHH
Q 018060          214 PGF-WMDIGQPRDYITGLR  231 (361)
Q Consensus       214 ~~~-~~~i~t~~dy~~a~~  231 (361)
                      ++. |.+||||+||.++++
T Consensus       236 ~~~~~~~idtpeDl~~a~~  254 (256)
T 3tqd_A          236 KSKCPPGVDTEEDLERVRA  254 (256)
T ss_dssp             SSCCCCCCSSHHHHHHHHT
T ss_pred             CCCCCCCcCCHHHHHHHHH
Confidence            874 899999999998864

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.93  E-value=1.2e-26  Score=210.36  Aligned_cols=221  Identities=23%  Similarity=0.336  Sum_probs=158.6

Q ss_pred             CeEEEEecCCCcccCCCC-CCCCCccceeCC-cchHHHHHHHHHHc-CCCEEEEEcccCh-HHHHHHHHHhhhccCcEEE
Q 018060            1 MKALILVGGFGTRLRPLT-LSVPKPLVEFAN-KPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKII   76 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt-~~~pK~llpl~g-~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~   76 (361)
                      |++||||||.|+||+|+| ...||+|+|++| +|||+|+++++..+ ++++++|++++.. ..+.+++.+      ..+ 
T Consensus         3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~------~~~-   75 (337)
T 2cu2_A            3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG------IRL-   75 (337)
T ss_dssp             EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS------SEE-
T ss_pred             eEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc------Cce-
Confidence            579999999999999999 689999999998 99999999999998 7999999999853 344444432      232 


Q ss_pred             EecCCCCCCCchHHHHHHhhccC-CCCCcEEEEeCCeeecc--CHHHHHHHHH---HcCCceEEEEEEccCCCCceeEEE
Q 018060           77 CSQETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVISEY--PFAEMIEFHK---AHGGEASIMVTKVDEPSKYGVVVM  150 (361)
Q Consensus        77 ~~~~~~~~g~~~al~~~~~~~~~-~~~~~~lv~~~D~~~~~--~l~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~~  150 (361)
                       ..++.+.|++.++..+.. +.. ...+.+++++||+++..  .+..+++...   +.+..+++...+...+..||++..
T Consensus        76 -i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~  153 (337)
T 2cu2_A           76 -LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRL  153 (337)
T ss_dssp             -EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEE
T ss_pred             -EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEE
Confidence             223456688888888876 531 12348999999997653  3555554431   224556666666666678999987


Q ss_pred             cCC---CCeEeeeeecCCCC-------CCCeEEEEEEEeCHhhH-hhccCC-CCc---c--------ccchHHh------
Q 018060          151 EES---TGKVEKFVEKPKLF-------VGNKINAGIYLLNPAVL-DRIELR-PTS---I--------EKEVFPK------  201 (361)
Q Consensus       151 ~~~---~~~v~~~~ek~~~~-------~~~~~~~Giyi~~~~~l-~~l~~~-~~~---~--------~~d~l~~------  201 (361)
                      +++   .++|..|.|||...       .+.++++|+|+|+++.+ +.++.. +..   +        ..+.++.      
T Consensus       154 ~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~si  233 (337)
T 2cu2_A          154 GPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISI  233 (337)
T ss_dssp             EEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCH
T ss_pred             CCcccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchH
Confidence            642   16899999998631       12689999999999976 554311 110   0        0123333      


Q ss_pred             ---HHhc-CceEEEEecceEEEcCCHHHHHHHH
Q 018060          202 ---IALE-GKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       202 ---l~~~-~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                         ++.+ .++++++.+++|.|++++++|.++.
T Consensus       234 dy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~  266 (337)
T 2cu2_A          234 DYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (337)
T ss_dssp             HHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             HHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence               3443 5799999999999999999998885

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.93  E-value=1.1e-24  Score=190.24  Aligned_cols=217  Identities=18%  Similarity=0.182  Sum_probs=163.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .|||||+|.|+||.      +|+|+|++|||||+|+++.+.++++++|+|+++  .+.+.+++.++    +.++.+..+.
T Consensus        20 ~aIIlA~G~stRlp------~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~~----g~~v~~~~~~   87 (264)
T 3k8d_A           20 VVIIPARYASTRLP------GKPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEAA----GGEVCMTRAD   87 (264)
T ss_dssp             EEEEECCSCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT----TCEEEECCTT
T ss_pred             EEEEEcCCCCCCCC------CcceeeECCeEHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHHc----CCEEEEecCC
Confidence            59999999999992      599999999999999999999999999999885  46677777654    6777666566


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCce-----eEEEcCCC
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYG-----VVVMEEST  154 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~v~~~~~~  154 (361)
                      ...|+.. +..+...+...+.+.++++.||.  +....++++++.+.+.++++++++.+..++..++     .+..|++ 
T Consensus        88 ~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~-  165 (264)
T 3k8d_A           88 HQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAE-  165 (264)
T ss_dssp             CCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTT-
T ss_pred             CCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCC-
Confidence            6667655 77777666322345899999999  4456699999999877778888888876543222     3556776 


Q ss_pred             CeEeeeeecCCC-------------CCCCeEEEEEEEeCHhhHhhccCC-CCcccc----chHHhHHhcCceEEEEe-cc
Q 018060          155 GKVEKFVEKPKL-------------FVGNKINAGIYLLNPAVLDRIELR-PTSIEK----EVFPKIALEGKLFAMVL-PG  215 (361)
Q Consensus       155 ~~v~~~~ek~~~-------------~~~~~~~~Giyi~~~~~l~~l~~~-~~~~~~----d~l~~l~~~~~i~~~~~-~~  215 (361)
                      |++..|.++|..             ..+.+.++|+|+|++++++.+... +..++.    +.++.|....++.++.. ..
T Consensus       166 g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~  245 (264)
T 3k8d_A          166 GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEV  245 (264)
T ss_dssp             SBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSCC
T ss_pred             CeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhhhHHHHHHHHHHHCCCceEEEEeCCC
Confidence            999999998742             125689999999999999887532 222221    33454444557888755 44


Q ss_pred             eEEEcCCHHHHHHHHHH
Q 018060          216 FWMDIGQPRDYITGLRL  232 (361)
Q Consensus       216 ~~~~i~t~~dy~~a~~~  232 (361)
                      .|.+|+||+||.++.+.
T Consensus       246 ~~~~IdtpeDl~~a~~~  262 (264)
T 3k8d_A          246 PGTGVDTPEDLERVRAE  262 (264)
T ss_dssp             CSCCCCSHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHH
Confidence            68999999999998753

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.92  E-value=1.2e-23  Score=182.62  Aligned_cols=218  Identities=16%  Similarity=0.156  Sum_probs=160.0

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHH-HHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQI-EALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l-~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      ..|||||+|.|+||.      +|+|+|++|+|||+|++ +.+.++++++|+|+++.  +.+.+++.++    +.++.+..
T Consensus         2 ~~aiIlA~G~stR~~------~K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~~~----g~~v~~~~   69 (253)
T 4fcu_A            2 KHIVIPARFSSSRLP------GKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD--ERIAEICRAE----GVDVVLTS   69 (253)
T ss_dssp             EEEEEECCSCCTTST------TGGGSEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHTT----TCCEEECC
T ss_pred             eEEEEEeCCCCCCCC------CCceeeECCeEhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHHHc----CCeEEEeC
Confidence            149999999999995      49999999999999999 99998899999999964  6677776543    66666554


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcC-CceEEEEEEc------cCCCCceeEEE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHG-GEASIMVTKV------DEPSKYGVVVM  150 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~-~~~~i~~~~~------~~~~~~~~v~~  150 (361)
                      +....|+ +++..+...+...+.+.++++.||. +. ...++++++.+.+.+ ..+..++++.      .+|..+ .+..
T Consensus        70 ~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~-kvv~  147 (253)
T 4fcu_A           70 ADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIV-KVVM  147 (253)
T ss_dssp             TTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSC-EEEE
T ss_pred             CCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCcc-EEEE
Confidence            4445555 4777777777422345899999999 33 456999999998763 3444444442      456554 4566


Q ss_pred             cCCCCeEeeeeecCCC-------------CCCCeEEEEEEEeCHhhHhhccCC-CCccc-c---chHHhHHhcCceEEEE
Q 018060          151 EESTGKVEKFVEKPKL-------------FVGNKINAGIYLLNPAVLDRIELR-PTSIE-K---EVFPKIALEGKLFAMV  212 (361)
Q Consensus       151 ~~~~~~v~~~~ek~~~-------------~~~~~~~~Giyi~~~~~l~~l~~~-~~~~~-~---d~l~~l~~~~~i~~~~  212 (361)
                      +.+ |+++.|.++|-.             ....+.++|+|+|++++|..+... ...++ .   +.++.+-...++.++.
T Consensus       148 d~~-g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~~le~~e~le~lr~l~~G~~I~~~~  226 (253)
T 4fcu_A          148 SKQ-NEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAV  226 (253)
T ss_dssp             CTT-SBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEE
T ss_pred             CCC-CeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCCcccchhHHHHHHHHHCCCceEEEE
Confidence            776 999999987641             124578999999999999887532 22222 1   3344444455799999


Q ss_pred             ecce-EEEcCCHHHHHHHHHHH
Q 018060          213 LPGF-WMDIGQPRDYITGLRLY  233 (361)
Q Consensus       213 ~~~~-~~~i~t~~dy~~a~~~~  233 (361)
                      .+++ |.+++||+||.++++.+
T Consensus       227 ~~~~~~~~IdtpeDL~~a~~~l  248 (253)
T 4fcu_A          227 AEANLPPGVDTQADLDRLNNMP  248 (253)
T ss_dssp             CSSCCCCCCCSHHHHHHHHTSC
T ss_pred             eCCCCCCCCCCHHHHHHHHHHH
Confidence            9888 99999999999998644

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.91  E-value=8.7e-23  Score=179.27  Aligned_cols=221  Identities=19%  Similarity=0.228  Sum_probs=156.5

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.|||||||.|+|| |     +|+|+|++|+|||+|+++.+.++++++|+|++++  +.+.+++.++    ++.+...+.
T Consensus         3 ~~aiIlA~G~g~R~-~-----~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~~----~~~~~~~~~   70 (262)
T 1vic_A            3 FTVIIPARFASSRL-P-----GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKSF----GAEVCMTSV   70 (262)
T ss_dssp             CEEEEECCCCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT----TCEEEECCC
T ss_pred             cEEEEEcCCCCCCC-C-----CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHhc----CCEEEECCc
Confidence            46999999999999 4     4999999999999999999999999999999875  4566666543    566644333


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCC-----CCceeEEEcCC
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEP-----SKYGVVVMEES  153 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~  153 (361)
                      ....|++ ++..+...+.....+.+++++||+  +...+++++++.+.+.++++++++.+..++     ..+..+..+++
T Consensus        71 ~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (262)
T 1vic_A           71 NHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD  149 (262)
T ss_dssp             SSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT
T ss_pred             cccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCC
Confidence            3344554 455555555322344799999999  345569999999888777777777776553     34455555655


Q ss_pred             CCeEeeeeecCC-----------------CCCCCeEEEEEEEeCHhhHhhccCCC-Cccc-cchHH--hHH-hcCceEEE
Q 018060          154 TGKVEKFVEKPK-----------------LFVGNKINAGIYLLNPAVLDRIELRP-TSIE-KEVFP--KIA-LEGKLFAM  211 (361)
Q Consensus       154 ~~~v~~~~ek~~-----------------~~~~~~~~~Giyi~~~~~l~~l~~~~-~~~~-~d~l~--~l~-~~~~i~~~  211 (361)
                       |++..|.+++.                 .+.....++|+|+|+++.+..+.... ..+. .+.+.  .++ ...++.++
T Consensus       150 -g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~  228 (262)
T 1vic_A          150 -GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVE  228 (262)
T ss_dssp             -SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEE
T ss_pred             -CCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHHHHHCCCeEEEE
Confidence             88988877641                 12235799999999999887653221 1111 11121  233 34578889


Q ss_pred             Eec-ceEEEcCCHHHHHHHHHHHHH
Q 018060          212 VLP-GFWMDIGQPRDYITGLRLYLD  235 (361)
Q Consensus       212 ~~~-~~~~~i~t~~dy~~a~~~~l~  235 (361)
                      ..+ +.|.+|+||+||..++..+..
T Consensus       229 ~~~~~~~~dI~tpeDl~~a~~~l~~  253 (262)
T 1vic_A          229 LAKEVPAVGVDTAEDLEKVRAILAA  253 (262)
T ss_dssp             ECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHh
Confidence            888 799999999999999876543

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.90  E-value=1.8e-22  Score=174.28  Aligned_cols=211  Identities=17%  Similarity=0.201  Sum_probs=149.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .|||||||.|+||+      ||+|+|++|+|||+|+++.+.++ +++|+|++++  +.+.+++.++     .++.+..+.
T Consensus         4 ~aiIlA~G~g~R~~------~K~l~~i~g~pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~~-----~~~~~~~~~   69 (234)
T 2y6p_A            4 AVIIPARLGSTRLK------EKPLKNLLGKPLIRWVVEGLVKT-GERVILATDS--ERVKEVVEDL-----CEVFLTPSD   69 (234)
T ss_dssp             EEEEECCSCCTTTT------TGGGCEETTEEHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTTT-----SEEEECCTT
T ss_pred             EEEEEcCCCCCCCC------CCcceeECCEEHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHhc-----eEEEECCcc
Confidence            58999999999996      79999999999999999999999 9999999876  5667666542     455544444


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEc---cCCCCceeEEEcCCCCe
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKV---DEPSKYGVVVMEESTGK  156 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~v~~~~~~~~  156 (361)
                      ...|++.++ .+.+.+   +.+.+++++||+ +.. .+++++++.|.+++..++++....   .++..++ +..+++ |+
T Consensus        70 ~~~g~~~~~-~~~~~~---~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-g~  143 (234)
T 2y6p_A           70 LPSGSDRVL-YVVRDL---DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVK-VVLDRE-GY  143 (234)
T ss_dssp             CCSHHHHHH-HHHTTC---CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCE-EEECTT-SB
T ss_pred             cccchHHHH-HHHHhC---CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceE-EEEcCC-CC
Confidence            445666654 444444   234899999999 666 569999999887764334333311   1333333 334655 89


Q ss_pred             EeeeeecCCC--C----CCCeEEEEEEEeCHhhHhhccCC-CCccc-cc---hHHhHHhcCceEEEEecceEEEcCCHHH
Q 018060          157 VEKFVEKPKL--F----VGNKINAGIYLLNPAVLDRIELR-PTSIE-KE---VFPKIALEGKLFAMVLPGFWMDIGQPRD  225 (361)
Q Consensus       157 v~~~~ek~~~--~----~~~~~~~Giyi~~~~~l~~l~~~-~~~~~-~d---~l~~l~~~~~i~~~~~~~~~~~i~t~~d  225 (361)
                      +..+.|+|..  .    ...+.++|+|+|+++.+..+... ...+. .|   .++.+....++.++..+++|.|++||+|
T Consensus       144 v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~d  223 (234)
T 2y6p_A          144 ALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEED  223 (234)
T ss_dssp             EEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHH
T ss_pred             EeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHH
Confidence            9999998743  1    13578999999999988765322 11111 11   2233334567999999999999999999


Q ss_pred             HHHHHHH
Q 018060          226 YITGLRL  232 (361)
Q Consensus       226 y~~a~~~  232 (361)
                      |..++..
T Consensus       224 l~~a~~~  230 (234)
T 2y6p_A          224 LKIVEEK  230 (234)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.90  E-value=7e-22  Score=171.80  Aligned_cols=216  Identities=20%  Similarity=0.217  Sum_probs=152.4

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi-~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .|||||+|.|+|| |     ||+|+|++|+|||+|+++.+.++++ ++++|++++  +.+.+++.++    ++++....+
T Consensus         4 ~aiIlA~G~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~~----~~~~~~~~~   71 (245)
T 1h7e_A            4 VIVIPARYGSSRL-P-----GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF----GGKAIMTRN   71 (245)
T ss_dssp             EEEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT----TCEEEECCS
T ss_pred             EEEEEcCCcCCCC-C-----CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHHc----CCeEEeCCC
Confidence            5999999999999 5     8999999999999999999999996 999999976  6677777653    566655444


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHc-CCceEEEEEEcc-----CCCCceeEEEcC
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAH-GGEASIMVTKVD-----EPSKYGVVVMEE  152 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~-~~~~~i~~~~~~-----~~~~~~~v~~~~  152 (361)
                      ....|++. +..+...+  . .+.+++++||+  +...+++++++.+.++ ++++++++.+..     ++... .+..+.
T Consensus        72 ~~~~g~~~-~~~~~~~~--~-~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  146 (245)
T 1h7e_A           72 DHESGTDR-LVEVMHKV--E-ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTV-KVVVNT  146 (245)
T ss_dssp             CCSSHHHH-HHHHHHHS--C-CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSC-EEEECT
T ss_pred             ccCCcHHH-HHHHHHhC--C-CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCc-EEEECC
Confidence            44456644 44455555  2 34899999999  3445699999998887 666767666651     22212 222355


Q ss_pred             CCCeEeeeeecCCC-C-----CCCeEEEEEEEeCHhhHhhccC-CCCccc-cchHHhHH--h-cCceEEEEecceEEEcC
Q 018060          153 STGKVEKFVEKPKL-F-----VGNKINAGIYLLNPAVLDRIEL-RPTSIE-KEVFPKIA--L-EGKLFAMVLPGFWMDIG  221 (361)
Q Consensus       153 ~~~~v~~~~ek~~~-~-----~~~~~~~Giyi~~~~~l~~l~~-~~~~~~-~d~l~~l~--~-~~~i~~~~~~~~~~~i~  221 (361)
                      + |++..+.+++.. .     .+.+.++|+|+|+++.+..+.. ....+. .|.++.+.  . ..++..+..++.|.|++
T Consensus       147 ~-g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dId  225 (245)
T 1h7e_A          147 R-QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVD  225 (245)
T ss_dssp             T-CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSS
T ss_pred             C-CcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHhCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCC
Confidence            4 889888876432 1     1256899999999998755431 111111 23443332  3 45788999989999999


Q ss_pred             CHHHHHHHHHHHHH
Q 018060          222 QPRDYITGLRLYLD  235 (361)
Q Consensus       222 t~~dy~~a~~~~l~  235 (361)
                      ||+||..+...+..
T Consensus       226 tp~Dl~~a~~~l~~  239 (245)
T 1h7e_A          226 TPACLEKVRALMAQ  239 (245)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999876544

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.88  E-value=4.1e-22  Score=171.81  Aligned_cols=207  Identities=21%  Similarity=0.342  Sum_probs=131.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.|||||||.|+||+|+    ||+|+|++|+|||+|+++.+.++ +++++|++ ++.+++.+++.+   .++..+.++.+
T Consensus        19 ~~~iIlA~G~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~---~~~~~~~~v~~   89 (232)
T 2xme_A           19 MKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLK---DKGFNYKIVRH   89 (232)
T ss_dssp             EEEEEEECC------CC----CGGGCEETTEEHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHT---TSCCCEEEEEC
T ss_pred             ceEEEECCcCcCcCCCC----CcEEeEECCEEHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHH---hcCCcEEEEEC
Confidence            46999999999999984    99999999999999999999998 99999999 665666666432   22333444443


Q ss_pred             CCC-CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCCceEEEEEE--ccCCCCceeEEEcCCCCe
Q 018060           81 TEP-LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTK--VDEPSKYGVVVMEESTGK  156 (361)
Q Consensus        81 ~~~-~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~~~~~~  156 (361)
                      ... .|++++++.+.+.+.    +++++++||++++.+ ++++++    ..  ..++...  ..++..++.+..+ + ++
T Consensus        90 ~~~~~g~~~~i~~a~~~~~----~~~lv~~~D~p~~~~~~~~l~~----~~--~~~~~~~~~~~~~~~~~~v~~~-~-g~  157 (232)
T 2xme_A           90 DRPEKGNGYSLLVAKNHVE----DRFILTMGDHVYSQQFIEKAVR----GE--GVIADREPRFVDIGEATKIRVE-D-GR  157 (232)
T ss_dssp             SCGGGCHHHHHHTTGGGCC----SSEEEEETTEEECHHHHHHHTT----CC--EEEEESSCSSSCTTTSCEEEEE-T-TE
T ss_pred             CCCCCCcHHHHHHHHHHCC----CCEEEEcCCcccCHHHHHHHHh----CC--CcEEEccccccCCCcceEEEEc-C-CE
Confidence            332 688999999988873    279999999976433 344433    21  1222111  1133456666665 3 89


Q ss_pred             EeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec-ceEEEcCCHHHHHHHHH
Q 018060          157 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYITGLR  231 (361)
Q Consensus       157 v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~-~~~~~i~t~~dy~~a~~  231 (361)
                      +..+.+++.  ..+..++|+|+++++++..+.+.... ...-+..++.++.+..+.++ +.|.+++||+||.++++
T Consensus       158 v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~~-g~~~l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~  230 (232)
T 2xme_A          158 VAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRDR-EEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANR  230 (232)
T ss_dssp             EEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTTS-SCCCHHHHHHHHTCBEEECCSCCEEEEECC--------
T ss_pred             EEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHhc-ChhHHHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHh
Confidence            999988764  35678999999999999876532210 01124445555556666665 68999999999988764

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.84  E-value=2.6e-20  Score=160.01  Aligned_cols=202  Identities=13%  Similarity=0.154  Sum_probs=141.1

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC-
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE-   80 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~-   80 (361)
                      |||||||.|+||+      ||+|+|++|+|||+|+++.+.+++ +++|+|+++.  +.+.+++.++    ++++...+. 
T Consensus         7 aiIlA~G~g~R~~------~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~~----~~~~~~~~~~   74 (228)
T 1ezi_A            7 AVILARQNSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKNF----GVEVVLRPAE   74 (228)
T ss_dssp             EEEECCSSCSSST------TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHHT----TCEEEECCC-
T ss_pred             EEEecCCCCCCCC------CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHHc----CCEEEeCchH
Confidence            9999999999997      799999999999999999999998 7999999964  4566666543    555522221 


Q ss_pred             --CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccC-CCCceeEEEcCCCC
Q 018060           81 --TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDE-PSKYGVVVMEESTG  155 (361)
Q Consensus        81 --~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~v~~~~~~~  155 (361)
                        ....|+.++++.+.+.+. ...+.+++++||.  +...+++++++.+.++++++++.+.+..+ |..  ....+++ |
T Consensus        75 ~~~~~~g~~~sv~~~l~~~~-~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~-g  150 (228)
T 1ezi_A           75 LASDTASSISGVIHALETIG-SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLK--TLLQINN-G  150 (228)
T ss_dssp             -----CHHHHHHHHHHHHHT-CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTS--CEEECC---
T ss_pred             HcCCCCChHHHHHHHHHHhC-CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCcce--eeEEcCC-C
Confidence              134466888999988873 2234899999998  33456899998877666677777777655 333  3333554 7


Q ss_pred             eEeeeeec----CC-C-C-CCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec-ceEEEcCCHHHHH
Q 018060          156 KVEKFVEK----PK-L-F-VGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYI  227 (361)
Q Consensus       156 ~v~~~~ek----~~-~-~-~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~-~~~~~i~t~~dy~  227 (361)
                      .+..+.+.    +. . . .....++|+|+++++.+....        .+     ...++..+..+ ..|.|++||+||.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~--------~~-----~g~~v~~~~~~~~~~~dIdtpeDl~  217 (228)
T 1ezi_A          151 EYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANN--------CF-----FIAPTKLYIMSHQDSIDIDTELDLQ  217 (228)
T ss_dssp             CEEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHT--------SS-----CCSSCEEEECCTGGGCCCCSHHHHH
T ss_pred             cEeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCC--------cc-----cCCceEEEEeCcccccCCCCHHHHH
Confidence            88888662    11 1 1 122467899999988765421        00     13456667765 5899999999999


Q ss_pred             HHHHHH
Q 018060          228 TGLRLY  233 (361)
Q Consensus       228 ~a~~~~  233 (361)
                      .+...+
T Consensus       218 ~a~~~l  223 (228)
T 1ezi_A          218 QAENIL  223 (228)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887643

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.84  E-value=3.1e-20  Score=160.39  Aligned_cols=216  Identities=13%  Similarity=0.139  Sum_probs=135.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEe
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICS   78 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~   78 (361)
                      |.|||||||.|+||++  ...||+|+|++|+|||+|+++.+.+++ +++|+|++++.. +.+++++.+++-.........
T Consensus         3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIIT   80 (236)
T ss_dssp             EEEEEEEC-------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEE
T ss_pred             eEEEEeCCccccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEE
Confidence            4799999999999987  678999999999999999999999984 999999999876 667777765431111111111


Q ss_pred             cCCCCCCCchHHHHHHhhccC--C--CCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcC
Q 018060           79 QETEPLGTAGPLALARDKLID--D--TGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEE  152 (361)
Q Consensus        79 ~~~~~~g~~~al~~~~~~~~~--~--~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~  152 (361)
                        ....|..++++.+...+..  .  ..+.+++++||+ + ...+++++++.|.+.++  .+++.+..++     +..++
T Consensus        81 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~~~~-----~~~~~  151 (236)
T 2vsh_A           81 --KGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEAVDT-----IVEST  151 (236)
T ss_dssp             --ECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEECCSC-----EEECS
T ss_pred             --CCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEecccc-----EEEeC
Confidence              2224677888888877731  1  224789999999 4 44579999999887654  3444455443     22233


Q ss_pred             CCC-eEeeeeecCCCCCCCeEEEEEEEeCHhhHhhc-cCCCC-c-c-ccchHHhHHhc-CceEEEEecceEEEcCCHHHH
Q 018060          153 STG-KVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-ELRPT-S-I-EKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDY  226 (361)
Q Consensus       153 ~~~-~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l-~~~~~-~-~-~~d~l~~l~~~-~~i~~~~~~~~~~~i~t~~dy  226 (361)
                      + | ++..+.+++..    ......|+|+++.+..+ ..... . . ..+.+..+... .++..+..++.|.|++||+||
T Consensus       152 ~-g~~~~~~~~~~~~----~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl  226 (236)
T 2vsh_A          152 N-GQFITDIPNRAHL----YQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDL  226 (236)
T ss_dssp             S-SSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHH
T ss_pred             C-CCeeeeecChHHh----eeecCCcEecHHHHHHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHH
Confidence            3 7 78777775321    11234789999876543 22211 1 1 12233444433 367778877899999999999


Q ss_pred             HHHHHH
Q 018060          227 ITGLRL  232 (361)
Q Consensus       227 ~~a~~~  232 (361)
                      ..++..
T Consensus       227 ~~a~~~  232 (236)
T 2vsh_A          227 KIAKSM  232 (236)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.83  E-value=3.9e-22  Score=183.54  Aligned_cols=74  Identities=16%  Similarity=0.242  Sum_probs=47.7

Q ss_pred             EEEEeCCeeecc--CHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCC-CeEeeeeecCCCCC-CCeEEEEEEEeC
Q 018060          105 FFVLNSDVISEY--PFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST-GKVEKFVEKPKLFV-GNKINAGIYLLN  180 (361)
Q Consensus       105 ~lv~~~D~~~~~--~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~-~~v~~~~ek~~~~~-~~~~~~Giyi~~  180 (361)
                      =|+-.+|+++..  ++.+++++|.     +++..  .+++..+|+..++.+. +++ .|.|||.... ..+..+|+|+|+
T Consensus        13 ~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiyI~~   84 (374)
T 2iu8_A           13 GLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAIIIS   84 (374)
T ss_dssp             --------CCSCCEEHHHHHHHTT-----CEEES--CTTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEEEEE
T ss_pred             CcccCccccccCcCcHHHHHHhhC-----CEEEC--CCcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEEEeC
Confidence            467788999887  8999999884     34442  4556678888877532 577 9999987422 245689999999


Q ss_pred             HhhHhh
Q 018060          181 PAVLDR  186 (361)
Q Consensus       181 ~~~l~~  186 (361)
                      +++++.
T Consensus        85 ~~~l~~   90 (374)
T 2iu8_A           85 RTQFQK   90 (374)
T ss_dssp             HHHHHT
T ss_pred             hhHhhh
Confidence            998753

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.82  E-value=1.7e-19  Score=154.38  Aligned_cols=210  Identities=18%  Similarity=0.178  Sum_probs=142.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChH-HHHHHHHHhhhccCcEEEEe
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPE-VMLNFLKEFEAKLGIKIICS   78 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i~~~   78 (361)
                      |.+||||||.|+||+.   ..||+|+|++|+|||+|+++.+.+++ +++++|++++... .+.+++.    ..++.+  .
T Consensus         3 ~~~vIlA~G~g~R~~~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~----~~~v~~--~   73 (223)
T 2xwl_A            3 TVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG----GEDSVI--V   73 (223)
T ss_dssp             EEEEEECCCCCGGGTS---SSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC----BTTEEE--E
T ss_pred             eEEEEECCccCcccCC---CCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc----cCCeEE--E
Confidence            3699999999999983   67999999999999999999999988 9999999998643 3444432    113333  3


Q ss_pred             cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCe
Q 018060           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGK  156 (361)
Q Consensus        79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~  156 (361)
                      ..  ..+.+++++.+...+.  +.+.+++++||+ + ...+++++++.+. .+.++++.+.+..++..+    .+++ |+
T Consensus        74 ~~--~~~~~~~i~~al~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d~~~~----~~~~-g~  143 (223)
T 2xwl_A           74 SG--GVDRTESVALALEAAG--DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPADTIKA----VDAN-GA  143 (223)
T ss_dssp             EC--CSSHHHHHHHHHTTCT--TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCSSCEEE----ECTT-SB
T ss_pred             cC--CCCHHHHHHHHHHhcC--CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEecccceEE----EcCC-Cc
Confidence            32  2356788888888772  334789999998 3 3446899998883 233556655565554222    2544 78


Q ss_pred             EeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCC-CccccchHHhHHhc-CceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          157 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-TSIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       157 v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~-~~~~~d~l~~l~~~-~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      +..+.|++.-    ....+.|+|+++.+..+.... ..+..+....+... .++..+..++.|.|++||+||..+...+
T Consensus       144 ~~~~~e~~~l----~~~~~p~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l  218 (223)
T 2xwl_A          144 VLGTPERAGL----RAVQTPQGFHADVLRRAYARATAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVL  218 (223)
T ss_dssp             EEECCCGGGE----EEECSCEEEEHHHHHHHHTTCCSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred             EEeecChHHh----eeeeCCcccCHHHHHHHHHHhhCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHH
Confidence            8888776421    111235788887665543222 22223334444333 4577788888999999999999887644

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.82  E-value=4.9e-21  Score=164.90  Aligned_cols=194  Identities=16%  Similarity=0.185  Sum_probs=134.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |++||||||. +||.+.+...||+|+|++|+|||+|+++.+.+++. +++|++..  +.+++++       ++.+     
T Consensus         3 ~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~-------~~~~-----   66 (232)
T 2dpw_A            3 PSAIVLAGGK-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP-------ALTL-----   66 (232)
T ss_dssp             CEEEEECCCB-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC-------SEEE-----
T ss_pred             eeEEEECCCC-CccccccCCCCceeeEECCEEHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc-------CeEe-----
Confidence            5799999999 66666555579999999999999999999999988 88887554  2222222       3333     


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCC-CCceeEEEcCCCCeE
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEESTGKV  157 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v  157 (361)
                      ....|++++++.+.+.+.    +.+++++||+  +....++++++ + +++.++++...+.+++ ..|+.+.     .++
T Consensus        67 ~~~~g~~~~i~~a~~~~~----~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~v  135 (232)
T 2dpw_A           67 PDRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAVEARFPRTK-----RTY  135 (232)
T ss_dssp             CCCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHHHHHCTTCC-----CCC
T ss_pred             cCCCCHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccchhhhCCCcc-----eeE
Confidence            445789999999998883    4899999999  55566899988 6 5555666666553222 1222211     356


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeCHhhHhhccCC----------------------------CCccccchHHhHHh--cCc
Q 018060          158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR----------------------------PTSIEKEVFPKIAL--EGK  207 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~----------------------------~~~~~~d~l~~l~~--~~~  207 (361)
                      ..+.|||      ..++|+|+|++..+..+...                            ......++++.+..  ..+
T Consensus       136 ~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~  209 (232)
T 2dpw_A          136 ARLREGT------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVE  209 (232)
T ss_dssp             EEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSC
T ss_pred             EEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcE
Confidence            6676664      37899999999988765320                            11122355555543  246


Q ss_pred             eEEEEe--cceEEEcCCHHHHH
Q 018060          208 LFAMVL--PGFWMDIGQPRDYI  227 (361)
Q Consensus       208 i~~~~~--~~~~~~i~t~~dy~  227 (361)
                      +..+..  ++.|.|++||+||.
T Consensus       210 v~~v~~~~~~~~~dIdtpeDl~  231 (232)
T 2dpw_A          210 ARALVTPYPEVGVDVDREEDLV  231 (232)
T ss_dssp             EEEEECSCGGGTCCCCSHHHHC
T ss_pred             EEEEecCChhhccCCCChhhcc
Confidence            777776  45799999999983

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.81  E-value=3.3e-19  Score=153.18  Aligned_cols=202  Identities=14%  Similarity=0.129  Sum_probs=134.0

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .|||||+|.|+||.      +|+|+|++|+|||+|+++.+.+++ +++|+|++.  .+.+.+++.++    ++++.....
T Consensus         5 ~aiIlA~G~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~~----g~~~~~~~~   72 (229)
T 1qwj_A            5 AALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQF----GAQVHRRSS   72 (229)
T ss_dssp             EEEEECCSCCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHHT----TCEEEECCG
T ss_pred             EEEEEcCCCCCCCC------CcccceECCEEHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHHc----CCEEEeChh
Confidence            58999999999994      499999999999999999999998 699999884  35677776553    566643331


Q ss_pred             ---CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCC
Q 018060           81 ---TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG  155 (361)
Q Consensus        81 ---~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~  155 (361)
                         ....+..+++..+...+.  +.+.+++++||.  +...+++++++.+.+.+++.++.+.+..+|..+..  .+.. .
T Consensus        73 ~~~~~~~~~~~~v~~al~~~~--~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v--~~~~-~  147 (229)
T 1qwj_A           73 ETSKDSSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEI--QKGV-R  147 (229)
T ss_dssp             GGSSTTCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCC--CSST-T
T ss_pred             hhcCCCCcHHHHHHHHHHhcC--CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhc--cccc-c
Confidence               122233477888887773  344899999999  33456999999988777665555544445544432  1210 0


Q ss_pred             eEee--eeec----CCCC--CCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEE-Eec-ceEEEcCCHHH
Q 018060          156 KVEK--FVEK----PKLF--VGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAM-VLP-GFWMDIGQPRD  225 (361)
Q Consensus       156 ~v~~--~~ek----~~~~--~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~-~~~-~~~~~i~t~~d  225 (361)
                      .+.+  +.++    +...  .....++|+|+|+++.+  +            +.+ ..+....+ ..+ +.|.||+||+|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~------------~~~-~~g~~~~~~~~~~~~~~dIdt~~D  212 (229)
T 1qwj_A          148 EVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--E------------MGY-LQGGKMAYYEMRAEHSVDIDVDID  212 (229)
T ss_dssp             CCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--H------------TTC-SSCSSEEEEECCGGGCCCHHHHCS
T ss_pred             ccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--c------------ccc-ccCCeEEEEECCcccccCCCCHHH
Confidence            1111  1111    1111  22357999999999987  1            111 12332234 554 68999999999


Q ss_pred             HHHHHHHHHH
Q 018060          226 YITGLRLYLD  235 (361)
Q Consensus       226 y~~a~~~~l~  235 (361)
                      |..++..+..
T Consensus       213 l~~a~~~~~~  222 (229)
T 1qwj_A          213 WPIAEQRVLR  222 (229)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999876543

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.81  E-value=6.9e-19  Score=152.77  Aligned_cols=218  Identities=14%  Similarity=0.115  Sum_probs=142.4

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChH-HHHHHHHHhhhccCcEEEEec
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      .|||||||.|+||++  ...||+|+|++|+|||+|+++.+.+++ +++|+|+++++.. .+++.+.++.....+.+  ..
T Consensus         5 ~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~--~~   80 (246)
T 3f1c_A            5 YAQILAGGKGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVV--IE   80 (246)
T ss_dssp             EEEEECC-----C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEE--EE
T ss_pred             EEEEECCccccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEE--EC
Confidence            599999999999987  467999999999999999999999997 9999999998654 35555655432212322  22


Q ss_pred             CCCCCCCchHHHHHHhhccC----CCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCC
Q 018060           80 ETEPLGTAGPLALARDKLID----DTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEES  153 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~----~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~  153 (361)
                      .  +.+..++++.++..+..    ...+.++++.||.  +....++++++.+.+.++  .+.+.+..+    .++..+++
T Consensus        81 ~--~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a--~i~~~~~~d----~i~~~~~~  152 (246)
T 3f1c_A           81 G--GEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGA--VDTVIEALD----TIVESSNH  152 (246)
T ss_dssp             C--CSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSE--EEEEEECSS----CEEECSSS
T ss_pred             C--CCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEEeccc----eEEEecCC
Confidence            1  23567889988888753    1234899999999  455569999999988653  344444433    34443343


Q ss_pred             CCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCC----CccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHH
Q 018060          154 TGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP----TSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYIT  228 (361)
Q Consensus       154 ~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~----~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~  228 (361)
                       +.+..+.+++.    ...--.-++|+.+.+...-...    ..+..|....+...+ ++..+..+..|.+|++|+||..
T Consensus       153 -~~v~~~~~r~~----l~~~qtpq~f~~~~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~  227 (246)
T 3f1c_A          153 -EVITDIPVRDH----MYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKV  227 (246)
T ss_dssp             -SBCCBCCCGGG----EEEEEEEEEEEHHHHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHH
T ss_pred             -CeEEEecChHH----hhhhcCCceeEHHHHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHH
Confidence             66666666533    1112245789877654332111    112234555554444 6888888889999999999999


Q ss_pred             HHHHHHHh
Q 018060          229 GLRLYLDS  236 (361)
Q Consensus       229 a~~~~l~~  236 (361)
                      ++..+..+
T Consensus       228 ae~~l~~~  235 (246)
T 3f1c_A          228 ANAIIQER  235 (246)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            98766543

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.80  E-value=1.1e-18  Score=146.24  Aligned_cols=183  Identities=22%  Similarity=0.270  Sum_probs=119.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||+|.|+||++    .||+|+|++|+|||+|+++.+.++++++++|+++++.+.+.+++.+.. .+...+.+.. 
T Consensus         1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~-~~~~~~~~~~-   74 (196)
T 3rsb_A            1 MDALIMAGGKGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAY-KDYKNIVVID-   74 (196)
T ss_dssp             CEEEEEC----CGGGG----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHT-TTTTEEEE---
T ss_pred             CEEEEECCCCCCcCCC----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhc-cCCCCEEEEE-
Confidence            8999999999999987    799999999999999999999999999999999998888888887621 1111333332 


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHH-----cCCceEEEEEEccCCCCceeEEEcCC
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKA-----HGGEASIMVTKVDEPSKYGVVVMEES  153 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~v~~~~~  153 (361)
                      ....|++++++.+.+.+    .+.+++++||+  +....++++++.+.+     .+.+..+.+.+.....       +. 
T Consensus        75 ~~~~g~~~si~~al~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~-  142 (196)
T 3rsb_A           75 TSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEKYP-------NP-  142 (196)
T ss_dssp             ------CCCCCTTTTTC----SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETTTCC-------SC-
T ss_pred             CCCCCcHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEccccC-------CC-
Confidence            34568888888888776    23899999999  445669999999886     4555555555543321       11 


Q ss_pred             CCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHH
Q 018060          154 TGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRL  232 (361)
Q Consensus       154 ~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~  232 (361)
                                |..+. .+..+++..++++..                    ......+.+++..+|||||+||..+...
T Consensus       143 ----------~~~~~-~~~~~~l~~l~~~~~--------------------~~~~~~~~~~~~~~DIDt~eDl~~ae~l  190 (196)
T 3rsb_A          143 ----------SIDFN-GLVPADINVVSPKHG--------------------YQKEEIMVIDELIFNINTKDDLKLAEML  190 (196)
T ss_dssp             ----------SCCSS-SEEEEEEEEECSCSS--------------------CCCEEEEECSSCCEECCSHHHHHHHHHC
T ss_pred             ----------Ceeec-cccceeeEEecCCCC--------------------cceeEEEEecceEEecCCHHHHHHHHHH
Confidence                      11122 244456666654430                    1122233444667899999999988653

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.79  E-value=2.6e-18  Score=147.80  Aligned_cols=211  Identities=16%  Similarity=0.156  Sum_probs=127.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |.|||||||.|+||++   ..||+|+|++|+|||+|+++.+.+++ +++++|+++++.+.+.+ +.++..   ..+.+. 
T Consensus         7 ~~aiIlA~G~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~---~~i~~~-   78 (231)
T 1vgw_A            7 NIALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFP---QVRVWK-   78 (231)
T ss_dssp             EEEEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCT---TSEEEC-
T ss_pred             eEEEEEcccccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCC---CceEEE-
Confidence            4699999999999997   68999999999999999999999886 99999999886555665 544221   123333 


Q ss_pred             CCCCCCCchHHHHHHhhccCC----CCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCC
Q 018060           80 ETEPLGTAGPLALARDKLIDD----TGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEES  153 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~----~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~  153 (361)
                       ....|++++++.+...+...    ..+.+++++||. +. ...++++++.+.+.+. ..+++.+..+.    ... .++
T Consensus        79 -~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~-~~~~~~~~~~~----~~~-~~~  151 (231)
T 1vgw_A           79 -NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAE-GGILAVPVADT----LKR-AES  151 (231)
T ss_dssp             -CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTT-CEEEEEECCSC----EEE-ESS
T ss_pred             -cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCC-eEEEEeecccc----eEE-eCC
Confidence             33567889999888776320    234899999998 33 4458899988765542 23444444332    111 232


Q ss_pred             CCeEeeeeecCCCCCCCe-EEEEEEEeCHhhHhhccCC-CCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHH
Q 018060          154 TGKVEKFVEKPKLFVGNK-INAGIYLLNPAVLDRIELR-PTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       154 ~~~v~~~~ek~~~~~~~~-~~~Giyi~~~~~l~~l~~~-~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                       |++....++     ..+ ...+.|+|+.+.+..+... ...-..+....+.. ..++..+..++.|.|++||+||..+.
T Consensus       152 -g~i~~~~~~-----~~~~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~  225 (231)
T 1vgw_A          152 -GQISATVDR-----SGLWQAQTPQLFQAGLLHRALAAENLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVR  225 (231)
T ss_dssp             -SBEEEEECC-----TTEEEEEEEEEEEHHHHHHHHHC----CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHH
T ss_pred             -CceEecCCh-----HHheeeeCCcEecHHHHHHHHHHHhhcCCCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHH
Confidence             555443322     122 2235899999876543211 10001112222211 24566777777899999999999886


Q ss_pred             HH
Q 018060          231 RL  232 (361)
Q Consensus       231 ~~  232 (361)
                      ..
T Consensus       226 ~~  227 (231)
T 1vgw_A          226 LL  227 (231)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.78  E-value=3e-18  Score=147.09  Aligned_cols=212  Identities=13%  Similarity=0.174  Sum_probs=133.0

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .|||||||.|+||+.   ..||+|+|++|+|||+|+++.+.++ ++++++|++++..+.+.+++.   ..++.++.+...
T Consensus         6 ~aiIlAaG~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~---~~~~~~v~~~~~   79 (228)
T 2yc3_A            6 SVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE---ESIDVDLSFAIP   79 (228)
T ss_dssp             EEEEECCCCC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTT---TTSSSEEEEECC
T ss_pred             EEEEECCccccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHH---HhCCCcEEEECC
Confidence            699999999999973   5799999999999999999999998 799999999987655554443   233445544432


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                        ..|..++++.+.+.+.. ..+.++++.||.  +...+++++++.+.+.+  +++++.+..+.    +...+++ +.+.
T Consensus        80 --~~~~~~sv~~al~~~~~-~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~~~----~~~~~~~-~~v~  149 (228)
T 2yc3_A           80 --GKERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVG--AAVLGVPAKAT----IKEVNSD-SLVV  149 (228)
T ss_dssp             --CSSHHHHHHHHHTTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHS--EEEEEEECCSC----CCCBCTT-SCBC
T ss_pred             --CCCHHHHHHHHHHhhcc-CCCEEEEecCCCccCCHHHHHHHHHHHHhcC--ceEEEEeccce----EEEEcCC-CceE
Confidence              35778999999988743 234788999997  44456899999887654  34444443331    1122332 4454


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHh-hccC--CCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLD-RIEL--RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~-~l~~--~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      ++.+++    ........|+|+.+.+. .+..  ....+..+.+..+...+ ++..+..+..|.+++||+||..+.+.+
T Consensus       150 ~~~~~~----~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l  224 (228)
T 2yc3_A          150 KTLDRK----TLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL  224 (228)
T ss_dssp             CCCSCC----CCEEEEEEEEECHHHHHHHHHHHHHHTCCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred             EecCcc----ceEEEeCCcEEEHHHHHHHHHHHHhcCCCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHH
Confidence            433221    11222348999987553 3321  11111234455554433 454444455799999999999887643

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.78  E-value=1.2e-17  Score=140.10  Aligned_cols=184  Identities=14%  Similarity=0.200  Sum_probs=128.5

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||||.|+||++     ||+|+|++|+|||+|+++.+.++++++++|+++++.+.+.+++.+    .++++... +.
T Consensus         7 ~~iIlA~G~~~R~g~-----~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~~   76 (199)
T 2waw_A            7 TGVVLAAGYSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL----DGLDIVLV-DD   76 (199)
T ss_dssp             EEEEEESSCCTTTTS-----CGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC----TTSEEEEC-CC
T ss_pred             EEEEECCCCCCCCCC-----CEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc----CCCEEEEC-CC
Confidence            599999999999964     999999999999999999999999999999999876666666543    25666543 33


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~--~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ...|++++++.+...+.. +.+.+++++||+.  ....++++++.  ++++..++...             +   ++-  
T Consensus        77 ~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~-------------~---g~~--  135 (199)
T 2waw_A           77 AGLGCSSSLKSALTWVDP-TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY-------------A---NGI--  135 (199)
T ss_dssp             CCTTCCCHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE-------------T---TEE--
T ss_pred             cccCHHHHHHHHHHhhhc-cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec-------------C---Ccc--
Confidence            346889999999988742 3348999999993  35568888877  33443332210             1   110  


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhc--CceEEEEe-cceEEEcCCHHHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE--GKLFAMVL-PGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~--~~i~~~~~-~~~~~~i~t~~dy~~a~~~~  233 (361)
                                    ..-++|+++.+..+.....+.  . ...++.+  .++..+.. ++.|.|++||+||..+.+.+
T Consensus       136 --------------~~P~~~~~~~l~~~~~~~~~~--~-~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~  195 (199)
T 2waw_A          136 --------------GHPFWVSRGVFGDLAELHGDK--G-VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV  195 (199)
T ss_dssp             --------------EEEEEEEGGGHHHHHTCSSTT--C-HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred             --------------cCCEEEcHHHHHHHHhcCCCH--H-HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence                          012578888887664221111  1 3334443  34666666 45899999999999887643

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.76  E-value=1.8e-17  Score=138.85  Aligned_cols=182  Identities=13%  Similarity=0.208  Sum_probs=123.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||||.|+||+     .||+|+|++|+|||+|+++.+.++++++++|++++..+.+.+++.+    .++++.... .
T Consensus         7 ~~iIlA~G~~~R~g-----~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~~-~   76 (197)
T 2wee_A            7 TGVVLAAGRSNRLG-----TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL----DGTDVVVVE-D   76 (197)
T ss_dssp             EEEEEECCCCTTTS-----SCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC----TTSEEEECC--
T ss_pred             EEEEECCCCcccCC-----CCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc----CCCEEEECC-C
Confidence            59999999999995     4999999999999999999999999999999999876666666543    256665432 2


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ...|++++++.+.+.+.. +.+.+++++||+ + ....++++++.  +.+...++..             .+   |+.  
T Consensus        77 ~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~-------------~~---g~~--  135 (197)
T 2wee_A           77 VERGCAASLRVALARVHP-RATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCR-------------YA---DGV--  135 (197)
T ss_dssp             ---CCHHHHHHHHTTSCT-TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEE-------------ET---TEE--
T ss_pred             cccCHHHHHHHHHHHhcc-cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEe-------------cC---CCc--
Confidence            345899999999988731 234899999999 3 34558888876  3333332211             01   110  


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhc--CceEEEEe-cceEEEcCCHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE--GKLFAMVL-PGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~--~~i~~~~~-~~~~~~i~t~~dy~~a~~  231 (361)
                                    ..-++|+++.+..+.....   ..-+..++..  .++..+.. ++.|.|++||+||..+..
T Consensus       136 --------------~~P~~~~~~~l~~l~~~~~---~~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~  193 (197)
T 2wee_A          136 --------------GHPFWFSRTVFGELARLHG---DKGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLE  193 (197)
T ss_dssp             --------------EEEEEEEGGGHHHHHTCCS---TTHHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred             --------------CCCEEECHHHHHHHHhCCC---ChhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHH
Confidence                          0114788888877652111   1223444444  34666665 468999999999987753

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.75  E-value=1.3e-18  Score=150.32  Aligned_cols=133  Identities=18%  Similarity=0.249  Sum_probs=102.0

Q ss_pred             CceEEEEecce----EEEcCCHHHHHHHHHHHHHhhhhcc---------------cccccCCcEEecceEEcCCCEECCC
Q 018060          206 GKLFAMVLPGF----WMDIGQPRDYITGLRLYLDSLRKKS---------------SLKLATGANIVGNVLVHESAQIGEG  266 (361)
Q Consensus       206 ~~i~~~~~~~~----~~~i~t~~dy~~a~~~~l~~~~~~~---------------~~~~~~~~~i~~~~~i~~~~~i~~~  266 (361)
                      .+++.+...++    |.|+++   |++++..++.......               ...+.+++.+.+++.|++++.|+++
T Consensus        39 ~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~  115 (240)
T 3r8y_A           39 VQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMN  115 (240)
T ss_dssp             SEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEECTT
T ss_pred             ceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEECCC
Confidence            34444444444    666555   7777776665433221               1345677777778888888888888


Q ss_pred             cEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcCCCEECCCcEEcCceEECCCeEECCc
Q 018060          267 CLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTVGQWARVENMTILGEDVHVCDE  336 (361)
Q Consensus       267 ~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~  336 (361)
                      ++|++++.||++|.|+.+|.|. +++||++|.|++++++.+         ++|+++|+||.++.|.++++||++++|+++
T Consensus       116 s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~g  195 (240)
T 3r8y_A          116 ATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAG  195 (240)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCC
Confidence            8887788888888888888887 789999999999999987         899999999999999888999999999999


Q ss_pred             eEEcC
Q 018060          337 IYSNG  341 (361)
Q Consensus       337 ~~i~~  341 (361)
                      +++.+
T Consensus       196 svV~~  200 (240)
T 3r8y_A          196 AVVTE  200 (240)
T ss_dssp             CEECS
T ss_pred             CEECC
Confidence            99865

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.75  E-value=2.1e-18  Score=161.63  Aligned_cols=255  Identities=14%  Similarity=0.165  Sum_probs=167.5

Q ss_pred             cCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe----CCeeeccCHHHHHHHHHHc--C---------CceEEE
Q 018060           71 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN----SDVISEYPFAEMIEFHKAH--G---------GEASIM  135 (361)
Q Consensus        71 ~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~----~D~~~~~~l~~~~~~~~~~--~---------~~~~i~  135 (361)
                      +|..+.+.....+.+++.+++.+.+.+  .   .++|+.    +|.....++..++..|.++  +         ...++.
T Consensus       111 ~g~~vt~~~~~~pL~~a~~i~~~d~~~--~---~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~  185 (496)
T 3c8v_A          111 KGQHFVCDGKMIPLHDDEVITIKDSFL--N---KTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVD  185 (496)
T ss_dssp             TTCEEEETTEEEECSSCCEEEEESCEE--E---SCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEE
T ss_pred             cCCEEEEEecccchhHhhhHHhhhhcC--C---ceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceee
Confidence            355666666666777777744333332  1   236777    4776656666666666542  1         123343


Q ss_pred             EEEccCC--CCceeEEEcCCCCeEeeeeecCCC--CCCCeEEEEEEEeCHhhHhhccC--CCCccccchHHhHHhcCceE
Q 018060          136 VTKVDEP--SKYGVVVMEESTGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIEL--RPTSIEKEVFPKIALEGKLF  209 (361)
Q Consensus       136 ~~~~~~~--~~~~~v~~~~~~~~v~~~~ek~~~--~~~~~~~~Giyi~~~~~l~~l~~--~~~~~~~d~l~~l~~~~~i~  209 (361)
                      +....++  ..++.+.    .+++....++|..  ..++.....+|.|+++.++.+..  .....               
T Consensus       186 L~~l~d~li~~~~~~~----~g~i~~~~~~pg~~~i~~~~~lnf~Y~f~~~~L~~~l~~~~~~n~---------------  246 (496)
T 3c8v_A          186 LSTIHNSVVRYFSYVQ----TGELVGKCVEPGQIWIKSGDELEFHYSFDKAILDKYISQEAGSCP---------------  246 (496)
T ss_dssp             SCEEESCEECTTCEEE----SSEEESCEECTTEEEEECTTSEEEEEECCHHHHTTTCBCCTTSCC---------------
T ss_pred             HHHHHHHHHHHHhhhc----CCceEEeeecCCceecccccccceEEEcCHHHHHHHHhhccCccc---------------
Confidence            3444455  4455542    2677777777653  12233345699999998876421  11111               


Q ss_pred             EEEecceEEEc--CCHHHHHHHHHHHHHh--hhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCc
Q 018060          210 AMVLPGFWMDI--GQPRDYITGLRLYLDS--LRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGV  285 (361)
Q Consensus       210 ~~~~~~~~~~i--~t~~dy~~a~~~~l~~--~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~  285 (361)
                          .+.|.|+  ..++++.+........  ........+.+.+.+.+++.||+++.|+++|.| ++++||++|.|+++|
T Consensus       247 ----~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~  321 (496)
T 3c8v_A          247 ----TGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENC  321 (496)
T ss_dssp             ----BSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEE-EEEEECTTCEECTTC
T ss_pred             ----cceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEE-eceEecCCCEECCCc
Confidence                1222222  2334444432111000  001223456667777788888899999999988 689999999999999


Q ss_pred             EEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCc----eEECCCeEECCceEEc---CcEEccCceeeccc
Q 018060          286 RLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM----TILGEDVHVCDEIYSN---GGVVLPHKEIKSSI  354 (361)
Q Consensus       286 ~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~----~~ig~~~~v~~~~~i~---~~~i~~~~~v~~~~  354 (361)
                      .|.+++||++|.|+++++|.+++||++|+||++|.|.++    ++||++++||+++++.   +..|.|++.+.+.+
T Consensus       322 ~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~v  397 (496)
T 3c8v_A          322 YIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGYI  397 (496)
T ss_dssp             EEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEECSEE
T ss_pred             eEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEEEEe
Confidence            999999999999999999999999999999999999998    8999999999999998   66777777766543

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.75  E-value=1.5e-17  Score=143.37  Aligned_cols=208  Identities=12%  Similarity=0.071  Sum_probs=130.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHH-HHHHHHhhhccCcEEEEe
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVM-LNFLKEFEAKLGIKIICS   78 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~-~~~l~~~~~~~~~~i~~~   78 (361)
                      |.|||||||.|+||+.   ..||+|+|++|+|||+|+++.+.+++ +++++|++++..... .+++.     ++..+...
T Consensus        14 ~~aiILAaG~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~~~~~~~~   85 (234)
T 1vpa_A           14 NVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-----HEKVLGIV   85 (234)
T ss_dssp             EEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-----CTTEEEEE
T ss_pred             CeEEEEcCcchhhcCC---CCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-----cCCceEEe
Confidence            5799999999999984   57999999999999999999999998 899999999865432 33322     12223221


Q ss_pred             cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCe
Q 018060           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGK  156 (361)
Q Consensus        79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~  156 (361)
                        ....+..++++.+...+.....+.+++++||+ +. ...++.+++.+.+.+  +.+++.+..+.    +...+.+ | 
T Consensus        86 --~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~i~~~~~~~~----~~~~~~~-g-  155 (234)
T 1vpa_A           86 --EGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETG--AATLALKNSDA----LVRVEND-R-  155 (234)
T ss_dssp             --ECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHS--EEEEEEECCSE----EEEEETT-E-
T ss_pred             --CCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEEEEecCCc----EEEECCC-C-
Confidence              11223567788888776321233788888998 33 446889998876653  33333343222    2223443 5 


Q ss_pred             EeeeeecCCCCCCCeE-EEEEEEeCHhhHhhccCCCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          157 VEKFVEKPKLFVGNKI-NAGIYLLNPAVLDRIELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       157 v~~~~ek~~~~~~~~~-~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      + .+.++     .... .-.-++|+.+.+..+.... ....+....+.. ..++..+..++.|.||+||+||..+.+.+
T Consensus       156 v-~~~~r-----~~~~~~~~p~~f~~~~l~~~~~~~-~~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l  227 (234)
T 1vpa_A          156 I-EYIPR-----KGVYRILTPQAFSYEILKKAHENG-GEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIA  227 (234)
T ss_dssp             E-EEECC-----TTEEEEEEEEEEEHHHHHHHHTTC-CCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred             c-ccCCh-----hHeeeecCCccccHHHHHHHHHhc-CCCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHH
Confidence            5 55543     1111 1134478888765543221 111222222222 23466666667899999999999887643

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=99.74  E-value=4.3e-17  Score=152.87  Aligned_cols=179  Identities=18%  Similarity=0.269  Sum_probs=135.5

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeC-CcchHHHHHHHHHHc----CCC-EEEEEcc-cChHHHHHHHHHhhhccCcE
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----GVT-EVVLAIN-YQPEVMLNFLKEFEAKLGIK   74 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~-g~pli~~~l~~l~~~----gi~-~i~vv~~-~~~~~~~~~l~~~~~~~~~~   74 (361)
                      .+||||||.|+||+.   ..||+|+|++ |+|||+++++++.+.    |+. .++++++ +..+.++++|+++ ..++.+
T Consensus        94 avViLAGG~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~-~~fg~~  169 (488)
T 2i5k_A           94 AVLKLNGGLGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKY-SANRIR  169 (488)
T ss_dssp             EEEEECCCBSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGG-CSSSCE
T ss_pred             eEEEEcCCCcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhc-cccCce
Confidence            479999999999986   8999999999 999999999998877    533 4667677 6778899999873 445777


Q ss_pred             EEEecCC------------------------CCCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeec-cCHHHHHHH
Q 018060           75 IICSQET------------------------EPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISE-YPFAEMIEF  124 (361)
Q Consensus        75 i~~~~~~------------------------~~~g~~~al~~~-----~~~~~~~~~~~~lv~~~D~~~~-~~l~~~~~~  124 (361)
                      +.+..|.                        .+.|+++++...     ++.+...+.++++|+++|.+.. .++. ++.+
T Consensus       170 i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~-~L~~  248 (488)
T 2i5k_A          170 IRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK-ILNH  248 (488)
T ss_dssp             EEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-HHHH
T ss_pred             EEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-HHHH
Confidence            7777555                        678999999743     3444223344999999999665 4675 6688


Q ss_pred             HHHcCCceEEEEEEccCCCC-ceeEEEcCCCCe--EeeeeecCCC--------CCCCeEEEEEEEeCHhhHhhc
Q 018060          125 HKAHGGEASIMVTKVDEPSK-YGVVVMEESTGK--VEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI  187 (361)
Q Consensus       125 ~~~~~~~~~i~~~~~~~~~~-~~~v~~~~~~~~--v~~~~ek~~~--------~~~~~~~~Giyi~~~~~l~~l  187 (361)
                      |.++++++++.+.+..++.. ||.+..++  |+  +.++.+.|..        ..-...++|+|+|+.+++..+
T Consensus       249 ~~~~~a~~t~~v~~~~~p~~~yG~Iv~~d--G~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~  320 (488)
T 2i5k_A          249 MIETGAEYIMELTDKTRADVKGGTLISYD--GQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRL  320 (488)
T ss_dssp             HHHSCCSEEEEEEECCGGGSSSCEEEEET--TEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHH
T ss_pred             HHhcCCcEEEEEEEecCCCCceeEEEEEC--CcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHH
Confidence            88888999999888877765 99877653  54  4444444442        123578999999999988655

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.71  E-value=8.4e-17  Score=138.81  Aligned_cols=213  Identities=15%  Similarity=0.127  Sum_probs=131.2

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |.+||||||.|+||+.   ..||+|+|++|+|||+|+++.+.+++ +++|+|++++..+.+.+ +..+.. ..+.  +..
T Consensus         8 ~~~iIlA~G~g~R~~~---~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~-~~v~--~~~   80 (236)
T 1i52_A            8 VCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLANH-PQIT--VVD   80 (236)
T ss_dssp             EEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGGC-TTEE--EEE
T ss_pred             eeEEEECCcCccccCC---CCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcCC-CCEE--EEC
Confidence            3699999999999983   57999999999999999999999887 89999999875444444 333211 1222  222


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV  157 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v  157 (361)
                      .  ..|..++++.+...+.  +.+.+++++||+ +.. ..++.+++.+.+.+... +++.+..+.    +...+++++++
T Consensus        81 ~--~~g~~~~i~~al~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i  151 (236)
T 1i52_A           81 G--GDERADSVLAGLKAAG--DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDT----MKRAEPGKNAI  151 (236)
T ss_dssp             C--CSSHHHHHHHHHHTST--TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEECCSC----EEEECTTSSSE
T ss_pred             C--CCCHHHHHHHHHHhcC--CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEecccc----EEEEcCCCCce
Confidence            2  2477888988888773  234899999999 333 45888888775544222 333343222    11123221344


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeCHhhHhhc-c---CCCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHHH
Q 018060          158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRI-E---LRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRL  232 (361)
Q Consensus       158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l-~---~~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~~  232 (361)
                      ....+    ...-+..-+.++|+.+.+..+ .   .+...+ .+....+.. ..++..+..++.|.|++||+||..+.+.
T Consensus       152 ~~~~~----~~~i~~~~~p~~f~~~~l~~~~~~~~~~g~~~-td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~  226 (236)
T 1i52_A          152 AHTVD----RNGLWHALTPQFFPRELLHDCLTRALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFY  226 (236)
T ss_dssp             EEEEC----CTTCEEEEEEEEEEHHHHHHHHHHHHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred             eeccC----hHhheeeeCCceecHHHHHHHHHHHHhcCCCc-ccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHH
Confidence            43321    112222225677887655332 1   111111 111222211 3456677777789999999999998765


Q ss_pred             HH
Q 018060          233 YL  234 (361)
Q Consensus       233 ~l  234 (361)
                      +.
T Consensus       227 ~~  228 (236)
T 1i52_A          227 LT  228 (236)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.70  E-value=3.7e-16  Score=130.33  Aligned_cols=118  Identities=14%  Similarity=0.140  Sum_probs=75.7

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCc-
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWA-  319 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~-  319 (361)
                      ..+++++.|.+++.|++++.|+++++|++++.||++|.|++++.|. ++.|+++|.|++++.|.+ +.|++++.||+++ 
T Consensus         4 ~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~   83 (192)
T 3mqg_A            4 ATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMV   83 (192)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCB
T ss_pred             CEECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceE
Confidence            3466677777777777777777777777777777777777777776 377777777777777754 5666666666553 


Q ss_pred             --------------------EEcCceEECCCeEECCceEE-cCcEEccCceeecccCCCccc
Q 018060          320 --------------------RVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       320 --------------------~i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~~~~~~~~  360 (361)
                                          .|++++.||.++.|.+++.| .++.|.+++.|.+++|+++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~  145 (192)
T 3mqg_A           84 FTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALV  145 (192)
T ss_dssp             CCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             EecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCCEE
Confidence                                33333444444444444444 256667777777777777664

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=99.69  E-value=6.6e-16  Score=145.41  Aligned_cols=184  Identities=20%  Similarity=0.260  Sum_probs=137.3

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCcccee---CCcchHHHHHHHHHH--------cC----CCEEEEEcccChHHHHHHHH
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKA--------VG----VTEVVLAINYQPEVMLNFLK   65 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl---~g~pli~~~l~~l~~--------~g----i~~i~vv~~~~~~~~~~~l~   65 (361)
                      |.+||||||.|+||+.   ..||+|+|+   .|+|+|+++++++.+        .|    +..+++......+.++++++
T Consensus       103 vavViLAGG~GTRLg~---~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~  179 (505)
T 1jv1_A          103 VAVLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFT  179 (505)
T ss_dssp             EEEEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHH
T ss_pred             eEEEEEcCCccccCCC---CCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHH
Confidence            5689999999999975   789999999   799999999999877        35    66666666667889999998


Q ss_pred             HhhhccCc---EEEEecC---------------------CCCCCCchHHHHHHh-----hccCCCCCcEEEEeCCee-ec
Q 018060           66 EFEAKLGI---KIICSQE---------------------TEPLGTAGPLALARD-----KLIDDTGEPFFVLNSDVI-SE  115 (361)
Q Consensus        66 ~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~~~-----~~~~~~~~~~lv~~~D~~-~~  115 (361)
                      + ...+|+   ++.+..|                     ..+.|+++.+..+..     .+...+.++++|+++|.+ ..
T Consensus       180 ~-~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~  258 (505)
T 1jv1_A          180 K-HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVK  258 (505)
T ss_dssp             H-TGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCC
T ss_pred             h-hhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccc
Confidence            7 334455   2554432                     357899988876642     222223349999999995 66


Q ss_pred             cCHHHHHHHHHHcCCceEEEEEE-ccCCCCceeEEEcCCCCeEeeeeecCCC----------CCCCeEEEEEEEeCHhhH
Q 018060          116 YPFAEMIEFHKAHGGEASIMVTK-VDEPSKYGVVVMEESTGKVEKFVEKPKL----------FVGNKINAGIYLLNPAVL  184 (361)
Q Consensus       116 ~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~~~~~~v~~~~ek~~~----------~~~~~~~~Giyi~~~~~l  184 (361)
                      .+...++.+|.++++++++.+++ ...+..+|.+...+...++.++.|+|..          ...+..++|.|+|+.+++
T Consensus       259 ~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~~L  338 (505)
T 1jv1_A          259 VADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFL  338 (505)
T ss_dssp             TTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHH
T ss_pred             cchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEECCeEEEEEEeeCCHHHhhhcccccccccceeeEEEEEecHHHH
Confidence            66678999999999999998886 5677889988775311245667776651          124689999999999988


Q ss_pred             hhcc
Q 018060          185 DRIE  188 (361)
Q Consensus       185 ~~l~  188 (361)
                      +.+.
T Consensus       339 ~~i~  342 (505)
T 1jv1_A          339 RDVV  342 (505)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7663

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.68  E-value=5e-16  Score=128.94  Aligned_cols=109  Identities=18%  Similarity=0.207  Sum_probs=93.4

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCc---EECCCCEECCCcEE------------eceEEccCcEECCCCEEec
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDV---AVGPGCVVESGVRL------------SRCTVMRGVRIKKHACISS  306 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~---~ig~~~~i~~~~~i------------~~~~i~~~~~i~~~~~i~~  306 (361)
                      ...+++++.+.+++.||+++.|+++++|.+++   .||++|.|+++|.|            .++.|+++|.|+++++|.+
T Consensus        21 ~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~  100 (187)
T 3r3r_A           21 RVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHG  100 (187)
T ss_dssp             TCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEES
T ss_pred             CeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeC
Confidence            34566777777888888888888888886544   99999999999999            5799999999999999999


Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC-cEEccCcee
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEI  350 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v  350 (361)
                      ++||++++||.++.|.+++.||++++|++++++.+ ..+.+++.+
T Consensus       101 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  145 (187)
T 3r3r_A          101 CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLY  145 (187)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEE
Confidence            99999999999999999999999999999999975 444444443

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.67  E-value=8.4e-16  Score=135.88  Aligned_cols=54  Identities=13%  Similarity=0.036  Sum_probs=33.4

Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++||++++|+.++.+.++++||++++||.++.+.       ++.+.+++.|.+++|+++++
T Consensus       144 ~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~dvp~~~~~  204 (283)
T 4eqy_A          144 CRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQDIPPFVIA  204 (283)
T ss_dssp             CEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEE
T ss_pred             cEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEecccCCCcEE
Confidence            3444444444444455556666666666666663       45667777777888887664

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=99.67  E-value=1.1e-15  Score=130.64  Aligned_cols=209  Identities=18%  Similarity=0.200  Sum_probs=137.0

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      .+||||||.|+||+.   ..||+|++++|+|||+|+++.+.+++ +++++|+++++. +.+++++..     ++.+.  .
T Consensus         9 ~aIIlAaG~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-----~v~~v--~   78 (231)
T 3q80_A            9 VAIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-----RAMIV--A   78 (231)
T ss_dssp             EEEEECCCCCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-----GCEEE--E
T ss_pred             EEEEECCCCCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-----CeEEE--c
Confidence            589999999999986   68999999999999999999999885 899999999865 455555432     23333  2


Q ss_pred             CCCCCCCchHHHHHHhhccCC-CCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCe
Q 018060           80 ETEPLGTAGPLALARDKLIDD-TGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGK  156 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~-~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~  156 (361)
                      .  ..+..++++.++..+... +.+.++++.||.  +....++++++.+.+ +..+.+.+.+..++-.    ..+++ |.
T Consensus        79 g--g~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~dt~~----~~~~~-g~  150 (231)
T 3q80_A           79 G--GSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLSDTIK----AVDAN-GV  150 (231)
T ss_dssp             C--CSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCSSCEE----EECTT-SB
T ss_pred             C--CCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEeccCCEE----EEcCC-Cc
Confidence            1  123368888998888532 134899999999  344558999988765 2346666666666532    23554 77


Q ss_pred             EeeeeecCCCCCCCeEEEEEEEeCHhhHhhc-c---CC-CCccccchHHhHHhc-CceEEEEecceEEEcCCHHHHHHHH
Q 018060          157 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-E---LR-PTSIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       157 v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l-~---~~-~~~~~~d~l~~l~~~-~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                      +.+..+...   -....+ -++|+.+.+... .   .. ......|....+... .++..+.-+..++.+++|+|+..+.
T Consensus       151 v~~~~~r~~---l~~~qT-Pq~F~~~~L~~a~~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae  226 (231)
T 3q80_A          151 VLGTPERAG---LRAVQT-PQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQ  226 (231)
T ss_dssp             EEECCCGGG---EEEECS-CEEEEHHHHHHHHHHHTC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHH
T ss_pred             EEEecchhh---eEEEcC-CcEEEHHHHHHHHHHHHhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHH
Confidence            776654311   011222 478998766543 1   11 011223444444333 3466555555678999999998887


Q ss_pred             HH
Q 018060          231 RL  232 (361)
Q Consensus       231 ~~  232 (361)
                      ..
T Consensus       227 ~~  228 (231)
T 3q80_A          227 AI  228 (231)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.67  E-value=8.2e-16  Score=125.90  Aligned_cols=109  Identities=18%  Similarity=0.181  Sum_probs=94.1

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEe-----ceEEccCcEECCCCEEeccEEcCCC
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS  313 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~  313 (361)
                      ...+.+++.+.+++.|++++.|+++++|.++   +.||++|.|+++|.|.     ++.|+++|.|++++.|.+++||+++
T Consensus        18 ~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~   97 (173)
T 1xhd_A           18 SAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDA   97 (173)
T ss_dssp             TCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTC
T ss_pred             CcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCC
Confidence            3456677777788888888888888888654   7999999999999998     7999999999999999999999999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcC-cEEccCcee
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEI  350 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v  350 (361)
                      +||.++.|.+++.||++++|++++++.. ..+.+++.+
T Consensus        98 ~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  135 (173)
T 1xhd_A           98 LIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA  135 (173)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             EEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence            9999999999999999999999999974 455444444

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.67  E-value=2e-15  Score=125.92  Aligned_cols=109  Identities=15%  Similarity=0.119  Sum_probs=87.4

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEEC---CCcEECCCCEECCCcEEe-----------------ceEEccCcEECCCC
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLS-----------------RCTVMRGVRIKKHA  302 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~-----------------~~~i~~~~~i~~~~  302 (361)
                      ..+.+.+.|.+++.||+++.|+++|+|.   +++.||++|.|+++|.|.                 ++.|++++.|+.++
T Consensus        19 a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~   98 (194)
T 3tv0_A           19 AVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGC   98 (194)
T ss_dssp             CEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTC
T ss_pred             CEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecce
Confidence            3445555666666666666666666663   346889999999999984                 35899999999999


Q ss_pred             EEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceee
Q 018060          303 CISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  351 (361)
Q Consensus       303 ~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~  351 (361)
                      .+.++.|+++++|+.++.|.+++.||++|+|++++++.+...+|..++.
T Consensus        99 ~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv  147 (194)
T 3tv0_A           99 YSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI  147 (194)
T ss_dssp             EECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEE
T ss_pred             eEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEE
Confidence            9999999999999999999999999999999999999876555555544

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.67  E-value=7.7e-16  Score=128.11  Aligned_cols=107  Identities=19%  Similarity=0.272  Sum_probs=87.7

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEEe------ceEEccCcEECCCCEEeccEEcCCC
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS------RCTVMRGVRIKKHACISSSIIGWHS  313 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~------~~~i~~~~~i~~~~~i~~~~i~~~~  313 (361)
                      ..+.+++.+.+++.||+++.|+++++|.+   ++.||++|.|+++|.|.      ++.|+++|.|++++.|.+++||+++
T Consensus        40 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~  119 (191)
T 3ixc_A           40 AFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNA  119 (191)
T ss_dssp             SEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTC
T ss_pred             CEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCC
Confidence            34556666666777777777777777752   33789999999999997      8999999999999999999999999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcCcEEccCce
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  349 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~  349 (361)
                      +||.++.|.+++.||++++|++++++.++..+|..+
T Consensus       120 ~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~  155 (191)
T 3ixc_A          120 FVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGE  155 (191)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred             EECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCe
Confidence            999999999999999999999999997543333333

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.66  E-value=2.7e-16  Score=135.49  Aligned_cols=197  Identities=16%  Similarity=0.126  Sum_probs=118.6

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~   82 (361)
                      |||||||.|+||++   . ||+|+|++|+|||+|+++.  ..++++|+|+++..   +.+ +..    .++.+  ...  
T Consensus        28 aiILAgG~s~Rm~~---~-~K~l~~i~gkpli~~~l~~--~~~~~~ivvv~~~~---~~~-~~~----~~v~~--~~~--   89 (236)
T 2px7_A           28 VLIPAAGNGLRLGR---G-PKAFLQVGGRTLLEWTLAA--FRDAAEVLVALPPG---AEP-PKG----LGAVF--LEG--   89 (236)
T ss_dssp             EEEECCC----------C-CGGGCBCSSSBHHHHHHHH--TTTCSEEEEEECTT---CCC-CTT----CSCEE--EEC--
T ss_pred             EEEEcCCCCccCCC---C-CCeEEEECCEEHHHHHHHh--cCCCCeEEEEeCHH---HHH-hhc----CCcEE--EeC--
Confidence            99999999999986   4 9999999999999999999  66799999999861   111 211    13433  222  


Q ss_pred             CCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ..+...+++.+...+.   .+.+++++||+ +.. ..++.+++.+.+.+  +.+.+.+..++.    ...+ + |++..+
T Consensus        90 ~~~~~~~i~~al~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~~~~----~~~~-~-G~v~~~  158 (236)
T 2px7_A           90 GATRQASVARLLEAAS---LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPVPDTL----MAPE-G-EAYGRV  158 (236)
T ss_dssp             CSSHHHHHHHHHHHCC---SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEECCSEE----EEEC-S-SSCEEE
T ss_pred             CCchHHHHHHHHHHcC---CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEecCCcE----EEec-C-CeEEec
Confidence            2356788888888773   34799999998 433 45888998876653  333334433321    1123 3 677666


Q ss_pred             eecCCCCCCCeEEEEEEEeCHhhHhhc-cC---CCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          161 VEKPKLFVGNKINAGIYLLNPAVLDRI-EL---RPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l-~~---~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      .+++.    -......++|+++.+..+ ..   +... ..+....+.. ..++..+..++.|.|++||+||..+.+.+
T Consensus       159 ~~~~~----~~~~~~~~~f~~~~l~~~~~~~~~~g~~-~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l  231 (236)
T 2px7_A          159 VPREA----FRLVQTPQGFFTALLREAHAYARRKGLE-ASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALA  231 (236)
T ss_dssp             ECGGG----CEEECSCEEEEHHHHHHHHHHHHHHTCC-CSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred             CChHh----hccccCCeEEcHHHHHHHHHHHHhcCCC-chhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHH
Confidence            55321    011113567888765432 11   1111 1122222222 33577777777899999999999887643

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.66  E-value=5.6e-15  Score=123.16  Aligned_cols=124  Identities=14%  Similarity=0.069  Sum_probs=100.3

Q ss_pred             EEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEc--CCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEc
Q 018060          217 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVH--ESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  293 (361)
Q Consensus       217 ~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~  293 (361)
                      ...++++..+++..+.++. ........+++++.+.+++.|+  +++.|+++++|++++.||++|.|+.++.|. ++.|+
T Consensus        51 ~iaig~~~~r~~~~~~l~~-~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig  129 (194)
T 3bfp_A           51 FIAIGNNEIRKKIYQKISE-NGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG  129 (194)
T ss_dssp             EECCCCHHHHHHHHHHHHT-TTCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEEeCCHHHHHHHHHHHHH-cCCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEEC
Confidence            3455666655555544332 1122345678888898899999  999999999999899999999999999998 79999


Q ss_pred             cCcEECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          294 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       294 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++|.|++++.|.+ ++||+++.||.++.|.++++||++++|++++++..
T Consensus       130 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~  178 (194)
T 3bfp_A          130 EFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVK  178 (194)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEcc
Confidence            9999999999988 89999999999999998899999999999988854

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.66  E-value=1.2e-15  Score=124.86  Aligned_cols=109  Identities=16%  Similarity=0.191  Sum_probs=95.3

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEe-----ceEEccCcEECCCCEEeccEEcCCC
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS  313 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~  313 (361)
                      ...+++++.+.+++.|++++.|++++.|.++   +.||++|.|+++|.|.     ++.|+++|.|++++.|++++||+++
T Consensus        16 ~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~   95 (173)
T 1v3w_A           16 SAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYV   95 (173)
T ss_dssp             TCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSE
T ss_pred             CCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCC
Confidence            3456777788888889999999999988754   8999999999999997     5899999999999999999999999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcC-cEEccCcee
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEI  350 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v  350 (361)
                      +||.++.|.++++||++++|++++++.+ ..+.+++.+
T Consensus        96 ~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v  133 (173)
T 1v3w_A           96 IIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLV  133 (173)
T ss_dssp             EECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEE
Confidence            9999999999999999999999999974 455555444

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.65  E-value=2.6e-15  Score=131.59  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=31.8

Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +||++++|+.++.+.+++.||++++||.++.+       .++.|++++.|.+++|+++++
T Consensus       124 ~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~dvp~~~~~  183 (270)
T 1j2z_A          124 VIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTV  183 (270)
T ss_dssp             EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEE
T ss_pred             EECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCceEEecCcEecccCCCCeEE
Confidence            34444444444444444555555666555555       356777888888888888765

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.65  E-value=1.8e-15  Score=134.04  Aligned_cols=95  Identities=12%  Similarity=0.162  Sum_probs=68.6

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcCCCEE
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTV  315 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i  315 (361)
                      .+++.|.++++|++++.|+++ +|++++.||++|.|+.++.|+ ++.|+++|.|++++.|.+         ++||++|.|
T Consensus       133 ~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~I  211 (304)
T 3eg4_A          133 VPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFI  211 (304)
T ss_dssp             CTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEE
T ss_pred             cCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEE
Confidence            344444444444444444443 444566666666666666666 377777777777777776         899999999


Q ss_pred             CCCcEEcCceEECCCeEECCceEEcC
Q 018060          316 GQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       316 g~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      |.+|.|.++++||++++|++++++.+
T Consensus       212 G~~a~I~~gv~IG~~avIgagsvV~~  237 (304)
T 3eg4_A          212 GARSEVVEGCIVREGSVLGMGVFIGK  237 (304)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCCCEEcCCcEECCCcEECCCCEEcC
Confidence            99999999999999999999999963

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.65  E-value=1.8e-15  Score=125.79  Aligned_cols=108  Identities=17%  Similarity=0.199  Sum_probs=90.7

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEEece------------EEccCcEECCCCEEecc
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLSRC------------TVMRGVRIKKHACISSS  307 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~~------------~i~~~~~i~~~~~i~~~  307 (361)
                      ..+.+.+.+.+++.||+++.|++++.|.+   ++.||++|.|++++.|..+            .|+++|.|++++.|.++
T Consensus        26 ~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~  105 (189)
T 3r1w_A           26 VFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGC  105 (189)
T ss_dssp             CEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESC
T ss_pred             cEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCc
Confidence            34567777777788888888888888863   3488999999999999754            99999999999999999


Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEEcC-cEEccCcee
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEI  350 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v  350 (361)
                      +||++++||.++.|.+++.||++++|++++++.+ ..+.+++.+
T Consensus       106 ~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv  149 (189)
T 3r1w_A          106 TIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVY  149 (189)
T ss_dssp             EECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEE
T ss_pred             EECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEE
Confidence            9999999999999999999999999999999975 444444444

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.64  E-value=1.1e-14  Score=124.05  Aligned_cols=124  Identities=18%  Similarity=0.164  Sum_probs=101.2

Q ss_pred             EEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccC
Q 018060          217 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRG  295 (361)
Q Consensus       217 ~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~  295 (361)
                      +.-++++....+..+.+.. ........+++.+.+.+.+.|++++.|+++++|++++.||++|.|+.++.|. ++.|+++
T Consensus        75 ~iAIg~~~~R~~i~~~l~~-~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~  153 (220)
T 4ea9_A           75 FVAIGDNRLRQKLGRKARD-HGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAA  153 (220)
T ss_dssp             EECCCCHHHHHHHHHHHHH-TTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             EEecCCHHHHHHHHHHHHh-cCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            3345565544444433322 2223445678888999999999999999999999999999999999999998 6999999


Q ss_pred             cEECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          296 VRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       296 ~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      |.|++++.|.+ ++||++|+||.++.|.+++.||++++|++++++..
T Consensus       154 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~  200 (220)
T 4ea9_A          154 CHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVR  200 (220)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcc
Confidence            99999999998 89999999999999999999999999999998865

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.64  E-value=2.2e-16  Score=132.17  Aligned_cols=179  Identities=19%  Similarity=0.219  Sum_probs=109.5

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||||.|+||++     ||+|+|++|+|||+|+++.+.++   +++|++++..+.+.+++.     .++ +... ..
T Consensus         4 ~~iIlAgG~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~-----~~~-~v~~-~~   68 (197)
T 3d5n_A            4 GVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM-----DQI-VIYN-PF   68 (197)
T ss_dssp             EEEEECSCCTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT-----TSC-EEEC-TT
T ss_pred             EEEEECCcCcccCCC-----CeeeCEeCceEHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc-----CCE-EEEC-CC
Confidence            699999999999975     99999999999999999999876   888888886554544433     245 4332 22


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ...|++++++.+.+.+.  +.+.+++++||+ +.. ..++++++.+ +.+.+.++...             +   ++   
T Consensus        69 ~~~G~~~si~~al~~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~-------------~---g~---  126 (197)
T 3d5n_A           69 WNEGISTSLKLGLRFFK--DYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH-------------K---GE---  126 (197)
T ss_dssp             GGGCHHHHHHHHHHHTT--TSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE-------------T---TE---
T ss_pred             CCCCHHHHHHHHHHhhc--cCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe-------------C---Cc---
Confidence            23588999999998884  234899999999 444 4478888766 43333332211             1   11   


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhc--CceEEEEec--ceEEEcCCHHHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE--GKLFAMVLP--GFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~--~~i~~~~~~--~~~~~i~t~~dy~~a~~~~  233 (361)
                       ...   +         .+|+++.+..+..-..  ..++ ..++.+  ..+..+..+  +.|.+++||+||..+....
T Consensus       127 -~~~---P---------~~~~~~~l~~l~~l~g--~~~~-~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~  188 (197)
T 3d5n_A          127 -RGN---P---------VLISKSLFNEIEKLRG--DVGA-RVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFH  188 (197)
T ss_dssp             -ECS---C---------EEEEHHHHHHHHHCCT--TCCT-HHHHTTSCGGGEEEEECCGGGTCCTTTC----------
T ss_pred             -ccC---C---------EEECHHHHHHHHccCC--CccH-HHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhh
Confidence             011   1         2788887776542111  1122 223333  235555543  5789999999998876543

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.64  E-value=4.2e-15  Score=130.20  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEE--------------eceEEccCcEECCCCEEe-----
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL--------------SRCTVMRGVRIKKHACIS-----  305 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i--------------~~~~i~~~~~i~~~~~i~-----  305 (361)
                      +.+.+.|.+++.|++++.|+++++|.+++.||++|.|++++.|              .++.||++|.|++++.|.     
T Consensus        25 I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~  104 (266)
T 3r0s_A           25 IEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAK  104 (266)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTT
T ss_pred             ECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCccc
Confidence            3344444444444444444445555445556666666666666              355566666666555554     


Q ss_pred             ---------------------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCC
Q 018060          306 ---------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKP  357 (361)
Q Consensus       306 ---------------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~  357 (361)
                                           ++.||++++|+.++.+.++++||++++||.++.+.       ++.+++++.|.+++|++
T Consensus       105 ~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~dvp~~  184 (266)
T 3r0s_A          105 GDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDIVPF  184 (266)
T ss_dssp             TTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCBBCSCBCTT
T ss_pred             CCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCeEecccCCC
Confidence                                 24455555555555555567777777777776663       45667777778888888


Q ss_pred             ccc
Q 018060          358 EIV  360 (361)
Q Consensus       358 ~~~  360 (361)
                      +++
T Consensus       185 ~~~  187 (266)
T 3r0s_A          185 CLA  187 (266)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            764

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.64  E-value=5.2e-15  Score=129.67  Aligned_cols=115  Identities=12%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEE-------------eceEEccCcEECCCCEEe-------
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-------------SRCTVMRGVRIKKHACIS-------  305 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------------~~~~i~~~~~i~~~~~i~-------  305 (361)
                      .+.+.|.+++.|++++.|+++++|++++.||++|.|++++.|             .++.|++++.|++++.|.       
T Consensus        29 g~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~  108 (265)
T 4e6u_A           29 GPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDN  108 (265)
T ss_dssp             CTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTT
T ss_pred             CCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCC
Confidence            344444444444444444445555445555555555555555             245555555555555554       


Q ss_pred             -------------------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCcc
Q 018060          306 -------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEI  359 (361)
Q Consensus       306 -------------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~  359 (361)
                                         +++|+++++|+.++.+.++++||++++||.++.+.       ++.+.+++.|.+++|++++
T Consensus       109 ~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~dvp~~~~  188 (265)
T 4e6u_A          109 ALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVM  188 (265)
T ss_dssp             SEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred             CceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCCCEEcccCCCCeE
Confidence                               34555555555555555567777777777776663       4666777888888888876


Q ss_pred             c
Q 018060          360 V  360 (361)
Q Consensus       360 ~  360 (361)
                      +
T Consensus       189 ~  189 (265)
T 4e6u_A          189 A  189 (265)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.63  E-value=2.5e-15  Score=126.55  Aligned_cols=101  Identities=15%  Similarity=0.227  Sum_probs=89.2

Q ss_pred             cccccCCcEEec--ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEE-----------
Q 018060          242 SLKLATGANIVG--NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----------  304 (361)
Q Consensus       242 ~~~~~~~~~i~~--~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----------  304 (361)
                      ...+.+++.+.+  ++.||+++.|+++|+|.+++.||++|.|+++|.|.    ++.|+++|.|++++.|           
T Consensus        38 ~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~  117 (205)
T 3vbi_A           38 NVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNA  117 (205)
T ss_dssp             SEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSS
T ss_pred             CCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCccccc
Confidence            345677788877  88999999999999998899999999999999993    4999999999999999           


Q ss_pred             ---------------eccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060          305 ---------------SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  342 (361)
Q Consensus       305 ---------------~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~  342 (361)
                                     .+++||++|+||.++.|.+++.||++++|++++++...
T Consensus       118 ~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~  170 (205)
T 3vbi_A          118 LMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES  170 (205)
T ss_dssp             CCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC
T ss_pred             ccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc
Confidence                           34799999999999999999999999999999998653

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.63  E-value=9.8e-16  Score=128.57  Aligned_cols=176  Identities=18%  Similarity=0.207  Sum_probs=113.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||||+|+||+.    .||+|+|++|+|||+|+++.+.. ++++|+|+++++.+.+    .+    .++++......
T Consensus         8 ~~iILAgG~s~Rmg~----~~K~ll~i~G~pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~~----~~~~~v~~~~~   74 (201)
T 1e5k_A            8 TGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMT-QLSHVVVNANRHQEIY----QA----SGLKVIEDSLA   74 (201)
T ss_dssp             EEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHH-HCSCEEEECSSSHHHH----HT----TSCCEECCCTT
T ss_pred             eEEEEcCCCCCcCCC----CCCceeeECceeHHHHHHHHHHh-hCCEEEEEcCCcHHHH----hh----cCCeEEecCCC
Confidence            599999999999972    59999999999999999999985 4899999998865332    12    25555333222


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ...|+..+++.+.+.+.   .+.+++++||+ +.. ..++.+++.  +.+.++++.   .           +.  ++   
T Consensus        75 ~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~~~~---~-----------~~--~~---  130 (201)
T 1e5k_A           75 DYPGPLAGMLSVMQQEA---GEWFLFCPCDTPYIPPDLAARLNHQ--RKDAPVVWV---H-----------DG--ER---  130 (201)
T ss_dssp             CCCSHHHHHHHHHHHCC---SSEEEEEETTCTTCCTTHHHHHHHT--CTTCSEEEE---E-----------CS--SC---
T ss_pred             CCCCHHHHHHHHHHhCC---CCcEEEEeCCcCcCCHHHHHHHHhh--cCCCCEEEE---e-----------cC--Cc---
Confidence            22588999999998873   24899999999 444 447777765  223322211   0           11  00   


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccC---CCCccccchHHhHHhcCceEEEEe---cceEEEcCCHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIALEGKLFAMVL---PGFWMDIGQPRDYITGL  230 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~d~l~~l~~~~~i~~~~~---~~~~~~i~t~~dy~~a~  230 (361)
                                 . ..-+.+|++.++..+..   +...    -+..++++.....+.+   .+.|.|++||+||.++.
T Consensus       131 -----------~-~Pl~~~~~~~~~~~l~~~l~~g~~----~~~~~l~~~~~~~v~~~~~~~~~~didTpeDl~~~~  191 (201)
T 1e5k_A          131 -----------D-HPTIALVNRAIEPLLLEYLQAGER----RVMVFMRLAGGHAVDFSDHKDAFVNVNTPEELARWQ  191 (201)
T ss_dssp             -----------E-EEEEEEEETTHHHHHHHHHHTTCC----CHHHHHHHTTCEEEECTTSTTTTCCCCSHHHHHTTC
T ss_pred             -----------c-ccEEEEEcHHHHHHHHHHHHcCCc----cHHHHHHHCCcEEEecCCCCCccccCCCHHHHHHHH
Confidence                       0 11124667777765532   1111    1333333334444444   35789999999997664

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.62  E-value=6.9e-16  Score=129.59  Aligned_cols=171  Identities=18%  Similarity=0.124  Sum_probs=109.8

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .+||||||.|+||+     .||+|+|++|+|||+|+++.+.++ +++++|+++++..   ++   +.   ++++... +.
T Consensus        16 ~~iILA~G~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~-~~~i~vv~~~~~~---~~---~~---~~~~v~~-~~   79 (201)
T 2e8b_A           16 TCYVLAGGKSKRFG-----EDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDREK---FS---FL---NAPVVLD-EF   79 (201)
T ss_dssp             EEEEEEESSCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESCSGG---GG---GG---TCCEEEC-CC
T ss_pred             eEEEECCCCCccCC-----CCcccceECceEHHHHHHHHHHHh-CCEEEEEeCcHHH---hh---cC---CceEEec-CC
Confidence            69999999999997     489999999999999999999988 8999999987643   11   11   4444332 23


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHH-HHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAE-MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~-~~-~~l~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ...|++++++.+.+.+.   .+.+++++||+. .. ..++. ++    +  .++++.             . .+  |+  
T Consensus        80 ~~~g~~~~i~~al~~~~---~~~~lv~~~D~P~i~~~~i~~~l~----~--~~~~v~-------------~-~~--g~--  132 (201)
T 2e8b_A           80 EESASIIGLYTALKHAK---EENVFVLSGDLPLMKKETVLYVLE----N--FKEPVS-------------V-AK--TE--  132 (201)
T ss_dssp             SSCCHHHHHHHHHHHCS---SSEEEEEETTCTTCCHHHHHHHHH----T--CCSSEE-------------E-EE--SS--
T ss_pred             CCCCcHHHHHHHHHHcC---CCCEEEEeCCcCcCCHHHHHHHHh----c--CCEEEE-------------e-cC--Cc--
Confidence            45689999999998873   248999999993 33 33565 55    1  122211             0 10  11  


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccC---CCCccccchHHhHHhcCceEEEEe--cceEE--EcCCHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIALEGKLFAMVL--PGFWM--DIGQPRDYITGLR  231 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~d~l~~l~~~~~i~~~~~--~~~~~--~i~t~~dy~~a~~  231 (361)
                                 .....|+| |++++++.+..   +......++++.    ..+..+.+  .+.|.  |++||+||.++.+
T Consensus       133 -----------~~p~~giy-~~~~~~~~l~~~~~~g~~~~~~~l~~----~~~~~~~~~~~~~~~~~dintpedl~~~~~  196 (201)
T 2e8b_A          133 -----------KLHTLVGV-YSKKLLEKIEERIKKGDYRIWALLKD----VGYNEVEIPEELRYTLLNMNTKEDLKRILA  196 (201)
T ss_dssp             -----------SEEEEEEE-EEGGGHHHHHHHHHTTCCCHHHHHHH----HCCEEEECCGGGGGGGCCSCCC--------
T ss_pred             -----------eeeEEEEE-eChhHHHHHHHHHHcCCchHHHHHHH----CCeEEeccccccchhhcCCCCHHHHHHHHH
Confidence                       13467999 99998876642   222222233333    24455555  35788  9999999988764

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.62  E-value=7.4e-15  Score=124.38  Aligned_cols=109  Identities=20%  Similarity=0.264  Sum_probs=93.7

Q ss_pred             ccccccCCcEEecceEEcCCCEECCCcEECC----CcEECCCCEECCCcEEec---------------eEEccCcEECCC
Q 018060          241 SSLKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLSR---------------CTVMRGVRIKKH  301 (361)
Q Consensus       241 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~  301 (361)
                      ....+.+++.+.+++.|++++.|+++|.|..    ++.||++|.|+++|.|..               +.|+++|.|+++
T Consensus        44 ~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~  123 (213)
T 3kwd_A           44 PTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHM  123 (213)
T ss_dssp             TTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTT
T ss_pred             CCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCC
Confidence            3455677888888889999999999998853    589999999999999974               889999999999


Q ss_pred             CEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          302 ACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       302 ~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                      +.|.+ ++||++++||.++.|.+ ++||++++|++++++.+..+.+++.|
T Consensus       124 ~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~~~~i~~~~~v  172 (213)
T 3kwd_A          124 ALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQDVEIPPGKYV  172 (213)
T ss_dssp             CEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEESCEECTTBEE
T ss_pred             cEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEECCcEeCCCCEE
Confidence            99998 99999999999999997 99999999999999965555555444

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=99.62  E-value=4.8e-15  Score=124.71  Aligned_cols=182  Identities=15%  Similarity=0.150  Sum_probs=115.6

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |.+||||||+|+||+.     ||+|+|++|+|||+|+++.+.++   +++|+++. .+.+..+.    ...++.+.....
T Consensus         1 m~aiILAgG~s~Rmg~-----~K~ll~~~G~pli~~~~~~l~~~---~vvvv~~~-~~~~~~~~----~~~~~~~v~d~~   67 (208)
T 3ngw_A            1 MKVAVLVGGVGRRIGM-----EKTEVMLCGKKLIEWVLEKYSPF---QTVFVCRD-EKQAEKLS----SRYEAEFIWDLH   67 (208)
T ss_dssp             CEEEEECCCCCTTTTS-----CGGGCEETTEEHHHHHHHHHTTS---EEEEECSS-HHHHHHHH----TTSCSCEECCTT
T ss_pred             CEEEEECCCchhhCCC-----CCcccEECCeeHHHHHHHHhcCC---CEEEEECC-HHHHHHHH----HhcCCeEEecCC
Confidence            8999999999999974     99999999999999999999876   88888874 23333322    223555543322


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                       ...|...+++.+...+  .  +.+ +++||+ +.. ..++.+++.+.+.+.++++..  .               |+  
T Consensus        68 -~~~G~~~si~~gl~~~--~--~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~--~---------------g~--  122 (208)
T 3ngw_A           68 -KGVGSIAGIHAALRHF--G--SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK--H---------------DY--  122 (208)
T ss_dssp             -CCCSHHHHHHHHHHHH--S--SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE--S---------------SS--
T ss_pred             -CCCChHHHHHHHHHHc--C--CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc--C---------------CC--
Confidence             2347778999998877  2  377 999999 434 458888888765455444332  1               10  


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec---------ceEEEcCCHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP---------GFWMDIGQPRDYITG  229 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~---------~~~~~i~t~~dy~~a  229 (361)
                         ..|          -+.++++..+..+...... ...-+..++..........+         +.+++++||+||.++
T Consensus       123 ---~~P----------l~al~~~~~~~~l~~~l~~-G~~~~~~~l~~~~~~~v~~~~~~~~d~~~~~~~ninTpeDl~~~  188 (208)
T 3ngw_A          123 ---PEP----------LLAYYAESAADELERAILQ-GIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRA  188 (208)
T ss_dssp             ---BCT----------TEEEECGGGHHHHHHHHHT-TCCCTHHHHHTSCEEEEEGGGGTTTCTTCGGGCCCCSHHHHHHH
T ss_pred             ---eeE----------EEEEEcHHHHHHHHHHHHc-CCCCHHHHHHhCCEEEecHHHhcccCcccceEEecCCHHHHHHH
Confidence               000          0134566655544311000 00113344444445444443         357899999999888


Q ss_pred             HHHHH
Q 018060          230 LRLYL  234 (361)
Q Consensus       230 ~~~~l  234 (361)
                      .+.+.
T Consensus       189 ~~~~~  193 (208)
T 3ngw_A          189 EEICS  193 (208)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            76543

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.61  E-value=7.3e-15  Score=122.52  Aligned_cols=111  Identities=17%  Similarity=0.218  Sum_probs=83.5

Q ss_pred             EEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec-----------------cE
Q 018060          250 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----------------SI  308 (361)
Q Consensus       250 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----------------~~  308 (361)
                      .+.+++.|++++.|+++|.|++++.||++|.|+++|.|.    +..||++|.|+++++|.+                 ++
T Consensus         8 k~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~   87 (194)
T 3tv0_A            8 KTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMI   87 (194)
T ss_dssp             ----CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEE
T ss_pred             hcCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceE
Confidence            345678888888888888888888888888888888884    468999999999999853                 46


Q ss_pred             EcCCCEECCCcEEcC-----ceEECCCeEECCceEE-cCcEEccCceeecc--cCCCccc
Q 018060          309 IGWHSTVGQWARVEN-----MTILGEDVHVCDEIYS-NGGVVLPHKEIKSS--ILKPEIV  360 (361)
Q Consensus       309 i~~~~~ig~~~~i~~-----~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~--~~~~~~~  360 (361)
                      ||+++.|+.++.+.+     ++.||.++.|++++.| .++.|++++.|.++  +|+++++
T Consensus        88 Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv  147 (194)
T 3tv0_A           88 IGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI  147 (194)
T ss_dssp             ECSSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEE
T ss_pred             ECCcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEE
Confidence            888888887776654     4555555555555666 47888889999887  8998876

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.61  E-value=1.2e-14  Score=127.29  Aligned_cols=115  Identities=10%  Similarity=0.036  Sum_probs=60.9

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-------------ceEEccCcEECCCCEEec------
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS------  306 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~------  306 (361)
                      .+.+.|.+++.|++++.|+++++|++++.||++|.|++++.|.             ++.|++++.|++++.|..      
T Consensus        27 ~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~  106 (262)
T 2qia_A           27 GPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGG  106 (262)
T ss_dssp             CTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTT
T ss_pred             CCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCC
Confidence            3334444444444444444444444455555555555555553             344555555555555542      


Q ss_pred             --cEEcCCCEECCCc------------------EEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCcc
Q 018060          307 --SIIGWHSTVGQWA------------------RVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEI  359 (361)
Q Consensus       307 --~~i~~~~~ig~~~------------------~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~  359 (361)
                        ++||+++.|++++                  .+.++++||++++||.++.+.       ++.+++++.|.+++|++++
T Consensus       107 ~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~  186 (262)
T 2qia_A          107 GLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVI  186 (262)
T ss_dssp             SEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSBBCTTEE
T ss_pred             CcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEccCCEECCcCCCCeE
Confidence              3444444443333                  333334555555555555542       5677778888888888876


Q ss_pred             c
Q 018060          360 V  360 (361)
Q Consensus       360 ~  360 (361)
                      +
T Consensus       187 ~  187 (262)
T 2qia_A          187 A  187 (262)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.61  E-value=8.9e-15  Score=126.68  Aligned_cols=107  Identities=18%  Similarity=0.218  Sum_probs=87.8

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCc----EECCCCEECCCcEEe------------------------ceEEcc
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDV----AVGPGCVVESGVRLS------------------------RCTVMR  294 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~----~ig~~~~i~~~~~i~------------------------~~~i~~  294 (361)
                      ..+.+++.+.+++.||+++.|+++|+|.+..    +||++|.|+++|.|.                        ++.|++
T Consensus        66 ~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~  145 (247)
T 1qre_A           66 AYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGN  145 (247)
T ss_dssp             CEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECT
T ss_pred             cEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECC
Confidence            3455666666677788888888888776533    899999999999996                        289999


Q ss_pred             CcEECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          295 GVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       295 ~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                      +|.|+++|.|.+ ++||++|+||.++.|.+ ++||++++|++++++.+..|.+++.+
T Consensus       146 ~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v  201 (247)
T 1qre_A          146 NVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYI  201 (247)
T ss_dssp             TCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEE
T ss_pred             CCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEE
Confidence            999999999999 89999999999999998 99999999999999954444444444

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.61  E-value=1.7e-14  Score=125.95  Aligned_cols=115  Identities=15%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEE-------------e-ceEEccCcEECCCCEEe------
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-------------S-RCTVMRGVRIKKHACIS------  305 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------------~-~~~i~~~~~i~~~~~i~------  305 (361)
                      .+.+.|.+++.|+++++|+++++|.+++.||++|.|++++.|             . ++.|+++|.|++++.|.      
T Consensus        22 ~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~  101 (259)
T 3hsq_A           22 GPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKED  101 (259)
T ss_dssp             CTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTT
T ss_pred             CCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCC
Confidence            344444444444444444444444444555555555555555             2 34555555555555554      


Q ss_pred             ------------------c-cEEcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCcc
Q 018060          306 ------------------S-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEI  359 (361)
Q Consensus       306 ------------------~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~  359 (361)
                                        + +.||+++.|+.++.+.+++.||++++||.++.+.       ++.+++++.|.+++|++++
T Consensus       102 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~dvp~~~~  181 (259)
T 3hsq_A          102 SPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQDVPPYST  181 (259)
T ss_dssp             BCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSSEEECSBBCTTEE
T ss_pred             CcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCCCEEcccCCCCcE
Confidence                              2 4445555555555555556677777777776663       5667778888888998876


Q ss_pred             c
Q 018060          360 V  360 (361)
Q Consensus       360 ~  360 (361)
                      +
T Consensus       182 ~  182 (259)
T 3hsq_A          182 V  182 (259)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.60  E-value=6.2e-15  Score=122.59  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=85.4

Q ss_pred             ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEe------ccEEcCCCEECCCcEE
Q 018060          252 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS------SSIIGWHSTVGQWARV  321 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~------~~~i~~~~~ig~~~~i  321 (361)
                      .+.+.|++++.|++++.|.+++.||++|.|+++|.|.    ++.||++|.|++++.|.      +++||+++.|++++.+
T Consensus        31 ~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i  110 (191)
T 3ixc_A           31 GVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCIL  110 (191)
T ss_dssp             TBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEE
T ss_pred             CCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEE
Confidence            4556667777777777777777788888888888875    34899999999999998      7899999999999988


Q ss_pred             cCceEECCCeEECCceEEc-------CcEEccCceee--cccCCCccc
Q 018060          322 ENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  360 (361)
Q Consensus       322 ~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~--~~~~~~~~~  360 (361)
                      .+ ++||+++.|++++.+.       ++.|.+++.|.  ..+++++++
T Consensus       111 ~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v  157 (191)
T 3ixc_A          111 HA-CTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELW  157 (191)
T ss_dssp             CS-CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             EC-CEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEE
Confidence            87 8888888888887774       56667777777  677877664

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.59  E-value=9.6e-15  Score=119.51  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=87.3

Q ss_pred             ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec----eEEccCcEECCCCEEe-----ccEEcCCCEECCCcEEc
Q 018060          252 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVE  322 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~ig~~~~i~  322 (361)
                      ...+.|++++.|++++.|.+++.||++|.|++++.|..    +.||++|.|+++++|.     +++||+++.|++++.|.
T Consensus        10 ~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~   89 (173)
T 1xhd_A           10 EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILH   89 (173)
T ss_dssp             TBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEE
T ss_pred             CCCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEe
Confidence            34566777777777777777888888888888888874    7999999999999998     78999999999999887


Q ss_pred             CceEECCCeEECCceEEc-------CcEEccCceee--cccCCCccc
Q 018060          323 NMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  360 (361)
Q Consensus       323 ~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~--~~~~~~~~~  360 (361)
                      + ++||+++.|++++.+.       ++.+.+++.|.  .++++++++
T Consensus        90 ~-~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  135 (173)
T 1xhd_A           90 S-CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA  135 (173)
T ss_dssp             S-CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             C-CEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence            6 8888888888777763       56667777776  578887765

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.59  E-value=3.9e-14  Score=117.99  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=88.4

Q ss_pred             cCCcEEecceEEcCCCEEC--CCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCcEE
Q 018060          246 ATGANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARV  321 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i  321 (361)
                      .....+++++.+++++.|+  ++|.|+++++|+.+++||++|.|. ++.|++++.||+++.|.. +.|..++.||+++.|
T Consensus        73 ~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I  152 (194)
T 3bfp_A           73 KIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFL  152 (194)
T ss_dssp             CBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             ccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEE
Confidence            3447788999999999999  999999999999999999999996 788888888888888885 778777888887777


Q ss_pred             cCceEECCCeEECCceEEcCcEEccCceeecccCCCccc
Q 018060          322 ENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       322 ~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +.+++|..+++|++++++     +++++|.+++++++++
T Consensus       153 g~~~~i~~~~~Ig~~~~I-----gagsvv~~~v~~~~~~  186 (194)
T 3bfp_A          153 GINSCVLPNLSLADDSIL-----GGGATLVKNQDEKGVF  186 (194)
T ss_dssp             CTTCEECTTCEECTTCEE-----CTTCEECSCBCSCCEE
T ss_pred             cCCCEECCCCEECCCCEE-----CCCCEEccccCCCCEE
Confidence            777777777777766655     4566677788877765

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.59  E-value=1.1e-14  Score=122.65  Aligned_cols=105  Identities=16%  Similarity=0.074  Sum_probs=77.4

Q ss_pred             EEcCCCEECCCcEECC--CcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe----ccEEcCCCEECCCcEE-------
Q 018060          256 LVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS----SSIIGWHSTVGQWARV-------  321 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~----~~~i~~~~~ig~~~~i-------  321 (361)
                      .+++++.|++++.|.+  ++.||++|.|+++|.|. ++.||++|.|++++.|.    +++||++|.|++++.|       
T Consensus        34 ~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~  113 (205)
T 3vbi_A           34 SVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDF  113 (205)
T ss_dssp             EECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCC
T ss_pred             EECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCc
Confidence            3444444444444443  56667777777777776 68889999999999993    4789999999999888       


Q ss_pred             ------------------cCceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          322 ------------------ENMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       322 ------------------~~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                                        ..+++||++|.||+++.|       .++.|++++.|.+++++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~v~~~~v~  177 (205)
T 3vbi_A          114 SGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIY  177 (205)
T ss_dssp             SSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             ccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCccCCCeEE
Confidence                              345777777777777776       367888889999999998775

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.59  E-value=3.1e-14  Score=129.59  Aligned_cols=80  Identities=23%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe-ccEEcCCCEECCCcE
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWAR  320 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~  320 (361)
                      ..+++++.+.+++.|++++.|+++++|++++.||++|+|+++|.|. ++.|+++|.|+++++|. +++||++|.|++++.
T Consensus       103 ~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~  182 (357)
T 4e79_A          103 TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTV  182 (357)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCE
T ss_pred             CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeE
Confidence            4556666666666666666666666666666666666666666665 55566666666566553 355555555555555


Q ss_pred             Ec
Q 018060          321 VE  322 (361)
Q Consensus       321 i~  322 (361)
                      |.
T Consensus       183 Ig  184 (357)
T 4e79_A          183 IG  184 (357)
T ss_dssp             ES
T ss_pred             EC
Confidence            53

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.58  E-value=3.1e-14  Score=127.07  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=23.9

Q ss_pred             ceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          324 MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +++||++++||.++.+       .++.|++++.|.+++|+++++
T Consensus       168 ~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~dvp~~~~~  211 (305)
T 3t57_A          168 HVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKYMMV  211 (305)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEE
T ss_pred             CCEECCceEEcCCCEEcCCeEECCCCEEcCCCeEcccCCCCeEE
Confidence            3455555555555544       256777788888888888764

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.58  E-value=3e-14  Score=118.68  Aligned_cols=97  Identities=22%  Similarity=0.270  Sum_probs=61.7

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-------ceEEccCcEECCCCEE-------------
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------RCTVMRGVRIKKHACI-------------  304 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~i-------------  304 (361)
                      +.+++.|.+.+.|+.++.||++|.|+++++|+.+++||++|.|.       ++.|++++.|++++.+             
T Consensus        18 Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~   97 (192)
T 3mqg_A           18 IGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERK   97 (192)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCCG
T ss_pred             ECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCccccccc
Confidence            34444444444444444444444444444444444444444443       3444444444444444             


Q ss_pred             ---eccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          305 ---SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       305 ---~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                         .+++|+++++||.++.|.+++.||++++|++++++..
T Consensus        98 ~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~  137 (192)
T 3mqg_A           98 SEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNK  137 (192)
T ss_dssp             GGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECc
Confidence               3468999999999999999999999999999999963

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.58  E-value=1.7e-14  Score=126.37  Aligned_cols=97  Identities=13%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec-eEEccCcEECCCCEEe---------ccEEcCCC
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACIS---------SSIIGWHS  313 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~~~  313 (361)
                      .+.+++.+.++++|++++.|+++ +++.++.||++|.|+.++.|.+ +.||++|.|++++.|.         +++||++|
T Consensus       106 ~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v  184 (276)
T 3gos_A          106 RVVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNC  184 (276)
T ss_dssp             EECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTC
T ss_pred             EECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCC
Confidence            34666677777777777777766 6667888888888888888884 8889999999888885         47999999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcC
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .||.++.|.+++.||++++||+++++..
T Consensus       185 ~IG~~a~I~~gv~IG~~avIgagsvV~~  212 (276)
T 3gos_A          185 FVGARSEVVEGVIVEEGSVISMGVFIGQ  212 (276)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECC
Confidence            9999999999999999999999999864

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.57  E-value=8.2e-14  Score=126.26  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=58.1

Q ss_pred             EEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCc
Q 018060          218 MDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGV  296 (361)
Q Consensus       218 ~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~  296 (361)
                      .-+.+|...+.....++... ......+++++.+.+++.|++++.|+++++|++++.||++|.|+++|.|+ ++.|+++|
T Consensus        74 ~~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~  152 (341)
T 3eh0_A           74 LVVKNPYLTYARMAQILDTT-PQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGS  152 (341)
T ss_dssp             EECSCHHHHHHHHHHHHCCC-CCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EEeCCHHHHHHHHHHHhccc-CCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCc
Confidence            44566665444333222211 12234566666666666666666666666666666666666666666663 56666666


Q ss_pred             EECCCCEEe-ccEEcCCCEECCCcEE
Q 018060          297 RIKKHACIS-SSIIGWHSTVGQWARV  321 (361)
Q Consensus       297 ~i~~~~~i~-~~~i~~~~~ig~~~~i  321 (361)
                      .|+++++|. ++.||++|.|++++.|
T Consensus       153 ~I~~~~~I~~~~~IG~~~~I~~g~~I  178 (341)
T 3eh0_A          153 RLWANVTIYHEIQIGQNCLIQSGTVV  178 (341)
T ss_dssp             EECSSCEECTTCEECSSCEECTTCEE
T ss_pred             EECCCcEECCCCEECCccEEcCCcEE
Confidence            666666663 3555666655555555

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.57  E-value=4.9e-14  Score=119.99  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCcEEcCc
Q 018060          247 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENM  324 (361)
Q Consensus       247 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~  324 (361)
                      ....+++.+.+++++.|+++|.|+++++|+++++||++|.|. +++|++++.||++|.|.. +.|+.++.||++|.|+.+
T Consensus        98 ~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~  177 (220)
T 4ea9_A           98 LVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVG  177 (220)
T ss_dssp             ECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred             cCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence            346677888888888888888888888888888888888877 677777777777777765 566666666666666655


Q ss_pred             eEECCCeEECCceEEcCcEEccCceeecccCCCccc
Q 018060          325 TILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       325 ~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++|..++.||++++     |++++.|.+++++++++
T Consensus       178 ~~i~~~~~Ig~~~~-----igagsvv~~~v~~~~~~  208 (220)
T 4ea9_A          178 ARVIPGVTIGADTI-----VGAGGVVVRDLPDSVLA  208 (220)
T ss_dssp             CEECTTCEECTTCE-----ECTTCEECSCBCTTCEE
T ss_pred             CEEcCCcEECCCCE-----ECCCCEEccccCCCcEE
Confidence            55555555555544     45566677777777654

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.57  E-value=5.7e-14  Score=123.68  Aligned_cols=98  Identities=21%  Similarity=0.301  Sum_probs=67.6

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec---------------eEEccCcEECCCCEEe-
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR---------------CTVMRGVRIKKHACIS-  305 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i~-  305 (361)
                      ...+++++.|.+++.|++++.|+++|+|++++.||++|.|+++|.|.+               +.|+++|.|+++++|. 
T Consensus         8 ~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~   87 (273)
T 3fs8_A            8 SAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYG   87 (273)
T ss_dssp             TCEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEES
T ss_pred             CeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeC
Confidence            345667777777777777777777777777777777777777777763               6777778877777774 


Q ss_pred             ccEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060          306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       306 ~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      ++.||+++.|++++.|.+++.||+++.|+.++.+
T Consensus        88 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i  121 (273)
T 3fs8_A           88 DTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDI  121 (273)
T ss_dssp             SCEECTTCEECSSCEECSSCEECSSCEECTTCEE
T ss_pred             CCEECCCCEECCceEECCCCEECCCCEECcccee
Confidence            4666666666666666555555555555554444

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.56  E-value=3e-14  Score=126.48  Aligned_cols=97  Identities=13%  Similarity=0.161  Sum_probs=73.3

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcCCC
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHS  313 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~  313 (361)
                      .+.+++.+.+++.|++++.|+++ +|+.++.||++|.|+.++.|+ ++.||++|.|++++.|.+         ++||++|
T Consensus       147 ~I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v  225 (316)
T 3tk8_A          147 RVVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNC  225 (316)
T ss_dssp             EECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTC
T ss_pred             EEeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCC
Confidence            34555566666666666666555 555677777777777777776 477788888888887776         6899999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcC
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +||.+|.|.+++.||++++||+++++..
T Consensus       226 ~IG~~a~I~~gv~IG~g~vIgagsvV~~  253 (316)
T 3tk8_A          226 FIGARSEVVEGVIVEENSVISMGVYLGQ  253 (316)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence            9999999988899999999999998864

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.56  E-value=3.7e-14  Score=117.60  Aligned_cols=107  Identities=13%  Similarity=0.055  Sum_probs=82.6

Q ss_pred             cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEE------------eccEEcCCCEEC
Q 018060          253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI------------SSSIIGWHSTVG  316 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i------------~~~~i~~~~~ig  316 (361)
                      ....+++++.|++++.|.+++.||++|.|++++.|.    ++.||++|.|++++.|            .+++||+++.|+
T Consensus        14 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig   93 (187)
T 3r3r_A           14 LFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVG   93 (187)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEEC
T ss_pred             cCcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEEC
Confidence            344566666666666666667777777777777776    3489999999999999            568999999999


Q ss_pred             CCcEEcCceEECCCeEECCceEEc-------CcEEccCceee--cccCCCccc
Q 018060          317 QWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  360 (361)
Q Consensus       317 ~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~--~~~~~~~~~  360 (361)
                      +++.|.+ ++||++++||+++++.       ++.|++++.|.  ..+++++++
T Consensus        94 ~~~~i~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  145 (187)
T 3r3r_A           94 HKVMLHG-CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLY  145 (187)
T ss_dssp             TTCEEES-CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             CCCEEeC-cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEE
Confidence            9999887 8888888888888873       46667777777  688887764

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.55  E-value=9.4e-14  Score=126.98  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=17.4

Q ss_pred             cEEcCCCEECCCcEEc----CceEECCCeEECCceEE
Q 018060          307 SIIGWHSTVGQWARVE----NMTILGEDVHVCDEIYS  339 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~----~~~~ig~~~~v~~~~~i  339 (361)
                      ++||+++.||++++|.    .+++||++++++.++.+
T Consensus       223 v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I  259 (372)
T 3pmo_A          223 VTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMI  259 (372)
T ss_dssp             EEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCcEEccCcccceEECCCCEECCCCEE
Confidence            4556666666666553    23455555544444444

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.55  E-value=7.6e-14  Score=120.37  Aligned_cols=20  Identities=20%  Similarity=0.280  Sum_probs=11.2

Q ss_pred             CcEEccCceeecccCCCccc
Q 018060          341 GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       341 ~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++.|.+++.|.+++++++++
T Consensus       189 ~~~I~~gsvV~~~vp~~~v~  208 (240)
T 3r8y_A          189 GAVVAAGAVVTEDVPPYTVV  208 (240)
T ss_dssp             TCEECTTCEECSCBCTTEEE
T ss_pred             CCEECCCCEECCCcCCCcEE
Confidence            34445555666666666553

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.55  E-value=6.8e-14  Score=127.38  Aligned_cols=34  Identities=9%  Similarity=0.033  Sum_probs=16.4

Q ss_pred             eEECCCeEECCceEEc-------CcEEccCceeeccc-CCCc
Q 018060          325 TILGEDVHVCDEIYSN-------GGVVLPHKEIKSSI-LKPE  358 (361)
Q Consensus       325 ~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~-~~~~  358 (361)
                      ++||++|+||.++.+.       ++.+.+++.|.+++ ++++
T Consensus       264 v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~~v~~~~~  305 (357)
T 4e79_A          264 TKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKNISEAGT  305 (357)
T ss_dssp             CEECTTCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEE
T ss_pred             cEECCCCEECcCCEECCCeEECCCCEEeecCEEcCccCCCCc
Confidence            4555555555555543       23334445555555 4443

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.55  E-value=1.1e-13  Score=120.80  Aligned_cols=60  Identities=23%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEE
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI  304 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  304 (361)
                      +++++.|++++.|++++.|+++|+|++++.||++|.|++++.|. ++.||++|.|+++++|
T Consensus         3 I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I   63 (259)
T 3hsq_A            3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVI   63 (259)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEE
T ss_pred             cCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEE
Confidence            34445555555555555555555555555555555555555554 3555555555555555

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.54  E-value=1.6e-14  Score=131.47  Aligned_cols=194  Identities=16%  Similarity=0.159  Sum_probs=120.0

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~-~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .+||||+|.|+||+.   ..||+|+|++|+|||+|+++.+.+ .++++|+|+++ +.+.+++++.      ++++.    
T Consensus         5 ~aIILAaG~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~------~v~~v----   70 (371)
T 1w55_A            5 SLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK------NYEFI----   70 (371)
T ss_dssp             EEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS------SSEEE----
T ss_pred             EEEEECCCCCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC------CCEEE----
Confidence            599999999999974   579999999999999999999998 47999999998 5444443322      13332    


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      ....|...+++.+.+.+.   .+.+++++||. +. ...++++++.+.+.  .+.+.+.+..+...+..-..+.  +.+.
T Consensus        71 ~~g~g~~~sv~~aL~~l~---~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~~~~~d~vk~v~~t~~r--~~l~  143 (371)
T 1w55_A           71 EGGDTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVADTTLFDNEALQR--EKIK  143 (371)
T ss_dssp             ECCSSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCCSCEEETTEEECG--GGCC
T ss_pred             eCCCChHHHHHHHHHhcC---CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEEEEeecCeeeeeeecCc--ccee
Confidence            223456788988888773   34899999999 33 44588888877554  2344444433321100000010  0110


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                      .. .            .-++|+.+.+..+...... ..+....+.. ..++..+..++.|.+++||+||..+.
T Consensus       144 ~~-~------------~P~~f~~~~l~~~~~~~~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae  202 (371)
T 1w55_A          144 LI-Q------------TPQISKTKLLKKALDQNLE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD  202 (371)
T ss_dssp             EE-C------------SCEEEEHHHHHHHTSSCCC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred             ec-C------------CcceecHHHHHHHHHhccc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence            00 0            1156787766543222111 1222222222 23566666667899999999997664

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.54  E-value=5.4e-14  Score=116.82  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             eEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEecc------------EEcCCCEECCC
Q 018060          255 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISSS------------IIGWHSTVGQW  318 (361)
Q Consensus       255 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~------------~i~~~~~ig~~  318 (361)
                      ..|++++.|++++.|++++.||++|.|++++.|.    ++.||++|.|++++.|..+            +||+++.|+++
T Consensus        20 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~   99 (189)
T 3r1w_A           20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQ   99 (189)
T ss_dssp             CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTT
T ss_pred             CEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCC
Confidence            3466666666666666677777777777777775    3589999999999999875            99999999999


Q ss_pred             cEEcCceEECCCeEECCceEEc-------CcEEccCceee--cccCCCccc
Q 018060          319 ARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  360 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~--~~~~~~~~~  360 (361)
                      +.|.+ ++||++++|++++.+.       ++.|++++.|.  ..+++++++
T Consensus       100 ~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv  149 (189)
T 3r1w_A          100 AMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVY  149 (189)
T ss_dssp             CEEES-CEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEE
T ss_pred             CEEeC-cEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEE
Confidence            99887 8888888888888873       57777888887  688887765

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.54  E-value=1.3e-13  Score=121.34  Aligned_cols=116  Identities=14%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCcEEc
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE  322 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~  322 (361)
                      +.+++.+.+++.|++++.|++++.|++++.||++|.|+.++.+. ++.|+++|.|++++.|.. +.|++++.+++++.+.
T Consensus        79 I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~  158 (273)
T 3fs8_A           79 IRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLT  158 (273)
T ss_dssp             ECTTCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             ECCCCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEec
Confidence            33444444555555555555566665666666666666666665 567777777777777763 5666666665544443


Q ss_pred             C----------ceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          323 N----------MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       323 ~----------~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +          ++.||++++||.++.+       .++.|++++.|.+++|+++++
T Consensus       159 ~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~~~  213 (273)
T 3fs8_A          159 NDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETVV  213 (273)
T ss_dssp             CCSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             CCCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECccCCCCcEE
Confidence            2          3444444444444444       256777778888888887765

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.54  E-value=9.7e-14  Score=125.79  Aligned_cols=51  Identities=14%  Similarity=0.003  Sum_probs=27.7

Q ss_pred             EcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccC-CCcc
Q 018060          309 IGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSIL-KPEI  359 (361)
Q Consensus       309 i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~-~~~~  359 (361)
                      ||+++.|+.++.+.++++||++|+||.++.+.       ++.+.+++.|.++++ ++++
T Consensus       243 IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V~~~v~~~~~~  301 (341)
T 3eh0_A          243 IGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVY  301 (341)
T ss_dssp             ECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCEECSCBCSCEEE
T ss_pred             ECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCEECCCcCCCCeE
Confidence            33333333333334456666666666666653       455566666677776 4443

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.54  E-value=5.2e-14  Score=133.23  Aligned_cols=117  Identities=24%  Similarity=0.356  Sum_probs=77.6

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-----------------
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-----------------  306 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-----------------  306 (361)
                      .+.+++.|.+++.||+++.|+++|.|. ++.||++|.|+++|.|.++.|+++|.|+++++|..                 
T Consensus       273 ~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~  351 (456)
T 2v0h_A          273 EIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIK  351 (456)
T ss_dssp             EECSSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred             EEcCCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEe
Confidence            445555666666666666666666663 56667777777666666665665555555555441                 


Q ss_pred             ------------------cEEcCCCEECCCcEEcC-------ceEECCCeEECCceEEc-------CcEEccCceeeccc
Q 018060          307 ------------------SIIGWHSTVGQWARVEN-------MTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSI  354 (361)
Q Consensus       307 ------------------~~i~~~~~ig~~~~i~~-------~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~  354 (361)
                                        ++||+++.||+++.+.+       +++||++|+||+++.+.       ++.|++++.|.+++
T Consensus       352 ~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~~v  431 (456)
T 2v0h_A          352 KSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDV  431 (456)
T ss_dssp             SCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEECSCB
T ss_pred             ccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEECCCc
Confidence                              25566666666665543       57788888888777763       67788888899999


Q ss_pred             CCCcccC
Q 018060          355 LKPEIVM  361 (361)
Q Consensus       355 ~~~~~~~  361 (361)
                      +++++++
T Consensus       432 ~~~~~~~  438 (456)
T 2v0h_A          432 GENELVI  438 (456)
T ss_dssp             CTTCEEC
T ss_pred             CCCCEEE
Confidence            9988763

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.54  E-value=1.2e-13  Score=121.01  Aligned_cols=97  Identities=20%  Similarity=0.290  Sum_probs=80.0

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEE--------------ecc
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI--------------SSS  307 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------~~~  307 (361)
                      ..+++++.|++++.|++++.|+++|+|++++.||++|+|++++.|. ++.||++|.|+++++|              ...
T Consensus         5 ~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v   84 (266)
T 3r0s_A            5 KKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGV   84 (266)
T ss_dssp             -CBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEE
T ss_pred             cccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceE
Confidence            3578899999999999999999999999999999999999999998 7999999999999999              467


Q ss_pred             EEcCCCEECCCcEEcCc-------eEECCCeEECCceEE
Q 018060          308 IIGWHSTVGQWARVENM-------TILGEDVHVCDEIYS  339 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~-------~~ig~~~~v~~~~~i  339 (361)
                      +||+++.|++++.|..+       ++||+++.+++++.+
T Consensus        85 ~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I  123 (266)
T 3r0s_A           85 VIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHI  123 (266)
T ss_dssp             EECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEE
T ss_pred             EECCCCEECCceEecCCcccCCccEEECCCceeCCcceE
Confidence            89999998888888642       455555444444443

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.54  E-value=5e-14  Score=126.02  Aligned_cols=81  Identities=20%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             cCCcEEec-ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCc
Q 018060          246 ATGANIVG-NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM  324 (361)
Q Consensus       246 ~~~~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~  324 (361)
                      ..++++.+ ++.|++++.|++++.|++++.||++|+|+++|+|.||.|++++.|+++++|.+++|+++|.|+.++.+.++
T Consensus        56 ~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~  135 (334)
T 2pig_A           56 QGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQ  135 (334)
T ss_dssp             SSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESS
T ss_pred             CCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCC
Confidence            44556666 66666777777777776667777777777777777777777777777777776666666655555544443


Q ss_pred             eE
Q 018060          325 TI  326 (361)
Q Consensus       325 ~~  326 (361)
                      +.
T Consensus       136 s~  137 (334)
T 2pig_A          136 SE  137 (334)
T ss_dssp             CE
T ss_pred             EE
Confidence            33

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.53  E-value=5.9e-14  Score=118.81  Aligned_cols=97  Identities=15%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEec---------------cEEcCCC
Q 018060          254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS---------------SIIGWHS  313 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------------~~i~~~~  313 (361)
                      ...|++++.|++++.|++++.||++|.|+++|.|.     ++.||++|.|+++|+|..               ++||+++
T Consensus        39 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v  118 (213)
T 3kwd_A           39 EPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNV  118 (213)
T ss_dssp             CCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTC
T ss_pred             CCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCc
Confidence            34555666666666666666666666677666664     367888888888888874               7788888


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEc------CcEEccCcee
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSN------GGVVLPHKEI  350 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~------~~~i~~~~~v  350 (361)
                      .|++++.|.++++||++++||+++.+.      ++.|++++.|
T Consensus       119 ~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V  161 (213)
T 3kwd_A          119 SITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI  161 (213)
T ss_dssp             EECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEE
T ss_pred             EECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEE
Confidence            888888888778888888888888764      4455555555

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.53  E-value=8.2e-14  Score=113.91  Aligned_cols=106  Identities=19%  Similarity=0.131  Sum_probs=79.2

Q ss_pred             ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec----eEEccCcEECCCCEEe-----ccEEcCCCEECCCcEEcCc
Q 018060          254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVENM  324 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~ig~~~~i~~~  324 (361)
                      ...+++++.|++++.|.+++.||++|.|++++.|..    +.||++|.|+++++|.     +++||+++.|++++.|.+ 
T Consensus        10 ~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-   88 (173)
T 1v3w_A           10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG-   88 (173)
T ss_dssp             CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES-
T ss_pred             CCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECC-
Confidence            345666666666666666677777777777777763    7899999999999998     478999999999988876 


Q ss_pred             eEECCCeEECCceEEc-------CcEEccCceee--cccCCCccc
Q 018060          325 TILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  360 (361)
Q Consensus       325 ~~ig~~~~v~~~~~i~-------~~~i~~~~~v~--~~~~~~~~~  360 (361)
                      ++||+++.|++++.+.       ++.+++++.|.  .++++++++
T Consensus        89 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v  133 (173)
T 1v3w_A           89 AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLV  133 (173)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             CEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEE
Confidence            8888888888777753       56667777776  467777664

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.53  E-value=6.1e-14  Score=122.40  Aligned_cols=95  Identities=20%  Similarity=0.180  Sum_probs=78.5

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEec---------cEEc
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS---------SIIG  310 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------~~i~  310 (361)
                      +++++.|++.++|++++.|+++++|+++++|+.++.||++|.|.     .+.||++|.|+++++|.+         ++||
T Consensus       181 I~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IG  260 (347)
T 3r5d_A          181 VPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVG  260 (347)
T ss_dssp             CCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEEC
T ss_pred             ccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEEC
Confidence            46677777777777777777777777777777777777777664     489999999999999986         7999


Q ss_pred             CCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          311 WHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       311 ~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++|.||.++.|  ++.||++|+||+|+++..
T Consensus       261 dnv~IGAnAtI--GVtIGd~~iIGAGSVVtk  289 (347)
T 3r5d_A          261 EGCLIGANAGI--GIPLGDRNIVEAGLYITA  289 (347)
T ss_dssp             TTCEECTTCEE--CSCBCTTCEECTTCEECT
T ss_pred             CCCEECCCCEE--eeEECCCCEECCCCEECC
Confidence            99999999999  599999999999999954

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.53  E-value=1.5e-13  Score=125.60  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=40.1

Q ss_pred             ceEEccCcEECCCCEEe-----ccEEcCC------------------CEECCCcEEcCceEECCCeEECCceEEc-----
Q 018060          289 RCTVMRGVRIKKHACIS-----SSIIGWH------------------STVGQWARVENMTILGEDVHVCDEIYSN-----  340 (361)
Q Consensus       289 ~~~i~~~~~i~~~~~i~-----~~~i~~~------------------~~ig~~~~i~~~~~ig~~~~v~~~~~i~-----  340 (361)
                      +++|+++|.||.+++|.     +++||++                  +.|+.++.+.+++.||++|+||.++.+.     
T Consensus       222 ~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~I  301 (372)
T 3pmo_A          222 GVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEI  301 (372)
T ss_dssp             CEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEE
T ss_pred             CeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEE
Confidence            45566666666666663     2333333                  3333333333446666666666666653     


Q ss_pred             --CcEEccCceeeccc-CCCccc
Q 018060          341 --GGVVLPHKEIKSSI-LKPEIV  360 (361)
Q Consensus       341 --~~~i~~~~~v~~~~-~~~~~~  360 (361)
                        ++.|.+++.|.+++ ++++++
T Consensus       302 g~~~vI~a~s~V~k~v~~~~~~~  324 (372)
T 3pmo_A          302 CDNVFVTGMTMVTRSITEPGSYS  324 (372)
T ss_dssp             CSSEEECTTCEECSCBCSCEEEC
T ss_pred             CCCCEEeeCCEEccCcCCCCcEE
Confidence              45666667777777 665543

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.53  E-value=1.1e-13  Score=122.75  Aligned_cols=92  Identities=18%  Similarity=0.184  Sum_probs=44.4

Q ss_pred             CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcC--------CCEEC
Q 018060          247 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGW--------HSTVG  316 (361)
Q Consensus       247 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~--------~~~ig  316 (361)
                      .++.+.+++.|++++.|+++|+|+++ +++.++.||++|.|. ++.|+++|.||++|.|+. +.|+.        +++||
T Consensus       144 ~~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IG  222 (316)
T 3tk8_A          144 GGFRVVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIE  222 (316)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEEC
T ss_pred             CCcEEeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEEC
Confidence            34444444444444444444444432 445555555555554 244555555555555543 34444        44555


Q ss_pred             CCcEEcCceEECCCeEECCceEE
Q 018060          317 QWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       317 ~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      ++|.|+.+++|++++.||++++|
T Consensus       223 d~v~IG~~a~I~~gv~IG~g~vI  245 (316)
T 3tk8_A          223 DNCFIGARSEVVEGVIVEENSVI  245 (316)
T ss_dssp             TTCEECTTCEECTTCEECTTCEE
T ss_pred             CCCEECCCCEEcCCCEECCCCEE
Confidence            55555444555555555554444

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.52  E-value=2.2e-13  Score=119.22  Aligned_cols=81  Identities=22%  Similarity=0.324  Sum_probs=71.8

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEE-------------ecc
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI-------------SSS  307 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~  307 (361)
                      ...+++++.+.+++.|++++.|+++|+|++++.||++|.|++++.|. ++.||++|.|+++++|             .++
T Consensus         7 ~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~   86 (265)
T 4e6u_A            7 HDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWL   86 (265)
T ss_dssp             -CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEE
T ss_pred             CCeECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeE
Confidence            45688999999999999999999999999999999999999999998 6999999999999999             357


Q ss_pred             EEcCCCEECCCcEEc
Q 018060          308 IIGWHSTVGQWARVE  322 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~  322 (361)
                      +||+++.|+++++|.
T Consensus        87 ~IG~~~~Ig~~~~I~  101 (265)
T 4e6u_A           87 EIGNNNLIREHCSLH  101 (265)
T ss_dssp             EECSSCEECTTCEEE
T ss_pred             EECCCeEECCceEEC
Confidence            888888888888886

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.51  E-value=1.3e-13  Score=130.94  Aligned_cols=54  Identities=19%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             EEcCCCEECCCcEEcC-------ceEECCCeEECCceEE-------cCcEEccCceeecccCCCcccC
Q 018060          308 IIGWHSTVGQWARVEN-------MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIVM  361 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~-------~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~~  361 (361)
                      .||+++.||+++.+.+       +++||++|+||+++.+       .++.|++++.|.++++++++++
T Consensus       379 ~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~v~~~~~~~  446 (468)
T 1hm9_A          379 EVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAI  446 (468)
T ss_dssp             EECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             cccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEECCCCCCCCEEE
Confidence            3444445555444432       4777777777777665       3677788888888999988763

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.51  E-value=8.4e-14  Score=120.61  Aligned_cols=95  Identities=20%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEec---------cEEc
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS---------SIIG  310 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------~~i~  310 (361)
                      +++++.|++.++|.++++|+++++|+++++|..++.++.+|.|.     ++.||++|.|++++.|.+         .+||
T Consensus       158 I~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IG  237 (332)
T 3fsy_A          158 VPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIG  237 (332)
T ss_dssp             CCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEEC
T ss_pred             cCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEEC
Confidence            56777788877888888888888887777777777777777764     378999999999999986         7999


Q ss_pred             CCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          311 WHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       311 ~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++|.||.++.|  ++.||++|+||+|+++..
T Consensus       238 Dnv~IGanAtI--gVtIGd~~iIGAGSVVtk  266 (332)
T 3fsy_A          238 KRCLLGANSGL--GISLGDDCVVEAGLYVTA  266 (332)
T ss_dssp             TTCEECTTCEE--CSCBCSSCEECTTCEECT
T ss_pred             CCCEECCCCEE--eeEECCCCEECCCCEECC
Confidence            99999999999  599999999999999953

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.50  E-value=2.5e-13  Score=119.00  Aligned_cols=54  Identities=26%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             EecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe
Q 018060          251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS  305 (361)
Q Consensus       251 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~  305 (361)
                      +.+++.|++++.|+++|.|+++ +++.++.||++|.|. +++|++++.||++|.|+
T Consensus       107 I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~  161 (276)
T 3gos_A          107 VVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLS  161 (276)
T ss_dssp             ECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEEC
T ss_pred             ECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEEC
Confidence            3333333333333333333322 333334444444333 33333333333333333

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=99.50  E-value=2.3e-13  Score=127.35  Aligned_cols=180  Identities=18%  Similarity=0.197  Sum_probs=128.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeC-CcchHHHHHHHHHHcCCC-----EEEEEccc-ChHHHHHHHH-HhhhccCc
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAVGVT-----EVVLAINY-QPEVMLNFLK-EFEAKLGI   73 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~-g~pli~~~l~~l~~~gi~-----~i~vv~~~-~~~~~~~~l~-~~~~~~~~   73 (361)
                      -+|+||||.|+||+.   ..||+|+|++ |+|+|+++++++.+.+..     +++++++. ..+.+++||+ +. ..+|+
T Consensus        77 avViLAGGlGTRLg~---~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~-~~fGl  152 (505)
T 2oeg_A           77 VVLKLNGGLGTGMGL---CDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARY-PWLYQ  152 (505)
T ss_dssp             EEEEEECCCCGGGTC---CSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHC-HHHHT
T ss_pred             eEEEEcCCcccccCC---CCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhh-hccCC
Confidence            589999999999995   8899999999 999999999999887532     56666665 5788999998 52 22233


Q ss_pred             ---EEEEe-----------------------cCCCCCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeec-cCHHHH
Q 018060           74 ---KIICS-----------------------QETEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISE-YPFAEM  121 (361)
Q Consensus        74 ---~i~~~-----------------------~~~~~~g~~~al~~~-----~~~~~~~~~~~~lv~~~D~~~~-~~l~~~  121 (361)
                         ++.+.                       ....+.|+++.+...     ++.+...+.++++|.++|.+.. .|+ .+
T Consensus       153 ~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~-~l  231 (505)
T 2oeg_A          153 VFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK-RV  231 (505)
T ss_dssp             TCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-HH
T ss_pred             CccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-HH
Confidence               22211                       123456999988755     3333223344999999999764 466 89


Q ss_pred             HHHHHHcCCceEEEEEEccCC-CCceeEEEc------CCCCe---------EeeeeecCCC--------CCCCeEEEEEE
Q 018060          122 IEFHKAHGGEASIMVTKVDEP-SKYGVVVME------ESTGK---------VEKFVEKPKL--------FVGNKINAGIY  177 (361)
Q Consensus       122 ~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~------~~~~~---------v~~~~ek~~~--------~~~~~~~~Giy  177 (361)
                      +.+|.++++++++.+++...+ ..+|++..+      .+ |+         +.++.+-|..        ..-.+.++...
T Consensus       232 lg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~~~~~~~d-g~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~Ninn~  310 (505)
T 2oeg_A          232 LAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKD-GQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNL  310 (505)
T ss_dssp             HHHHHHHTCSEEEEEEECCTTCCSSEEEEEEEEEECCSS-SCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEEEEEEE
T ss_pred             HHHHHhcCCcEEEEEEEecCCccceeEEEEecccccccC-CccccccCceeEEEeccCChhhhhcccCccccCeeEEEEE
Confidence            999999999999999888776 467877763      33 66         4454444432        22335788999


Q ss_pred             EeCHhhHhhc
Q 018060          178 LLNPAVLDRI  187 (361)
Q Consensus       178 i~~~~~l~~l  187 (361)
                      +|+-+++..+
T Consensus       311 ~~~l~~l~~~  320 (505)
T 2oeg_A          311 WIRLPVLLET  320 (505)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEEHHHHHHH
Confidence            9998877654

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.49  E-value=3.7e-14  Score=125.20  Aligned_cols=94  Identities=23%  Similarity=0.297  Sum_probs=63.6

Q ss_pred             CCcEEecceEEcCCCEE--CCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          247 TGANIVGNVLVHESAQI--GEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       247 ~~~~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      .+..|++++.|+++++|  +.+++||+++.||++|.|++++.|+ ++.+++++.++.++. .+++||++|+||.+|+|.+
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~-~~~~IGd~v~IGaga~Ilg  240 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTK-RHPTVGDYVTIGTGAKVLG  240 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSS-CSCEECSSCEECTTCEEES
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCc-cCCEECCCCEECCCCEECC
Confidence            44555555566666666  3445555555555555555555554 344444555444432 3459999999999999999


Q ss_pred             ceEECCCeEECCceEEcC
Q 018060          324 MTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       324 ~~~ig~~~~v~~~~~i~~  341 (361)
                      +++||++++||+++++..
T Consensus       241 gv~IG~~a~IGagsvV~~  258 (313)
T 3q1x_A          241 NIIVGSHVRIGANCWIDR  258 (313)
T ss_dssp             SCEECSSEEECTTCEECS
T ss_pred             CcEECCCCEECCCCEECC
Confidence            999999999999999953

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.47  E-value=5.5e-13  Score=122.46  Aligned_cols=15  Identities=20%  Similarity=0.218  Sum_probs=9.3

Q ss_pred             cEEcCCCEECCCcEE
Q 018060          307 SIIGWHSTVGQWARV  321 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i  321 (361)
                      .+||++++||++++|
T Consensus       229 v~Ig~~v~IG~~~~I  243 (374)
T 2iu8_A          229 VIIEDDVEIGANTTI  243 (374)
T ss_dssp             EEECTTCEECTTCEE
T ss_pred             EEECCCCEECCCcEE
Confidence            456666666666655

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.47  E-value=3.2e-13  Score=125.65  Aligned_cols=94  Identities=21%  Similarity=0.303  Sum_probs=83.4

Q ss_pred             cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCc
Q 018060          246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM  324 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~  324 (361)
                      ++++.+.+++.|++++.|++++.|.+++.||++|.|+++|.|. ++.||++|.|++++.|++++|++++.|++++.+.+ 
T Consensus       236 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-  314 (401)
T 2ggo_A          236 EDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGD-  314 (401)
T ss_dssp             CSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEES-
T ss_pred             CCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcc-
Confidence            4567788889999999999999999999999999999999998 79999999999999999999999999999888876 


Q ss_pred             eEECCCeEECCceEEc
Q 018060          325 TILGEDVHVCDEIYSN  340 (361)
Q Consensus       325 ~~ig~~~~v~~~~~i~  340 (361)
                      ++||+++.|++++.+.
T Consensus       315 ~~Ig~~~~Ig~~~~i~  330 (401)
T 2ggo_A          315 SVIAEDVNFGAGTLIA  330 (401)
T ss_dssp             CEECTTCEECTTCEEC
T ss_pred             eEECCCcEECCCcEEc
Confidence            7888888887777764

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.47  E-value=1.6e-13  Score=128.68  Aligned_cols=108  Identities=19%  Similarity=0.259  Sum_probs=87.9

Q ss_pred             ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCe
Q 018060          252 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV  331 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~  331 (361)
                      .....|++++.|++++++.+++.||++|.|+++|.|.+++||++|.|+++|+|.+++||+++.|++++.+.+ ++||++|
T Consensus       271 ~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~g-v~IGd~v  349 (496)
T 3c8v_A          271 ASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIIN-AHLGDMI  349 (496)
T ss_dssp             -----CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEES-EEEEETC
T ss_pred             ccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcC-ceECCCc
Confidence            345677888888888888888999999999999999999999999999999999999999999999999886 8888888


Q ss_pred             EECCceEEcCc-----------EEccCceee----cccCCCccc
Q 018060          332 HVCDEIYSNGG-----------VVLPHKEIK----SSILKPEIV  360 (361)
Q Consensus       332 ~v~~~~~i~~~-----------~i~~~~~v~----~~~~~~~~~  360 (361)
                      +||+++.+.++           .|++++.|.    ..+++++++
T Consensus       350 ~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v  393 (496)
T 3c8v_A          350 FTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLV  393 (496)
T ss_dssp             EECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEE
T ss_pred             EECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEE
Confidence            88888777544           456666666    577777654

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.47  E-value=3.7e-13  Score=116.78  Aligned_cols=89  Identities=16%  Similarity=0.197  Sum_probs=76.8

Q ss_pred             cceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEecc-------------------
Q 018060          253 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISSS-------------------  307 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~-------------------  307 (361)
                      .++.|++++.|.++++|.  .++.||++|.|+.+|.|.    ++.||++|.||++++|.++                   
T Consensus        84 ~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~  163 (252)
T 3jqy_B           84 NYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKD  163 (252)
T ss_dssp             CEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCC
T ss_pred             CeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCC
Confidence            445677777777777773  468899999999999998    8999999999999999885                   


Q ss_pred             -EEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          308 -IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       308 -~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                       +||++|+||.+|.|.++++||++++|++++++..
T Consensus       164 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  198 (252)
T 3jqy_B          164 IIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTK  198 (252)
T ss_dssp             EEECSSCEECSSEEECTTCEECTTCEECTTCEECS
T ss_pred             eEEecCcEECCCCEECCCCEECCCCEECCCCEECc
Confidence             8999999999999999999999999999999854

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=99.46  E-value=2e-12  Score=117.37  Aligned_cols=183  Identities=22%  Similarity=0.243  Sum_probs=132.8

Q ss_pred             eEEEEecCCCcccCCCCCCCCCcccee---CCcchHHHHHHHHHH-------------cCCCEEEEEcccChHHHHHHHH
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKA-------------VGVTEVVLAINYQPEVMLNFLK   65 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl---~g~pli~~~l~~l~~-------------~gi~~i~vv~~~~~~~~~~~l~   65 (361)
                      .+|+||+|.|+||+.   ..||+|+|+   .|+|++++.++++.+             .++.-+++......+.++++|+
T Consensus        37 avvlLAGG~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~  113 (405)
T 3oc9_A           37 ALITPAGGQGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFK  113 (405)
T ss_dssp             EEEEECCSBCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHH
T ss_pred             EEEEecCCCcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHH
Confidence            478999999999977   899999999   899999999998864             3565555555557789999998


Q ss_pred             HhhhccCc---EEEEec---------------------CCCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCe-eec
Q 018060           66 EFEAKLGI---KIICSQ---------------------ETEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDV-ISE  115 (361)
Q Consensus        66 ~~~~~~~~---~i~~~~---------------------~~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~-~~~  115 (361)
                      +. ..+|+   ++.+..                     ...|.|+++......     +.+...+-+++++...|. +..
T Consensus       114 ~~-~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~  192 (405)
T 3oc9_A          114 EH-QYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCK  192 (405)
T ss_dssp             HT-GGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCC
T ss_pred             hC-cccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccc
Confidence            73 33344   244322                     234678887776543     223223334899999999 777


Q ss_pred             cCHHHHHHHHHHcCCceEEEEEEccCC-CCceeEEEcCCCCeEeeeeecCCC---------CCCCeEEEEEEEeCHhhHh
Q 018060          116 YPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEESTGKVEKFVEKPKL---------FVGNKINAGIYLLNPAVLD  185 (361)
Q Consensus       116 ~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v~~~~ek~~~---------~~~~~~~~Giyi~~~~~l~  185 (361)
                      .....++.+|.++++++++.+.+..++ ...|.+...+..-+|.++.|.|..         ...+..+.++++|+.++++
T Consensus       193 ~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~fs~~fL~  272 (405)
T 3oc9_A          193 DVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDELNKQLSNGEFIYNCGHISINGYSTSFLE  272 (405)
T ss_dssp             SSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEEEEHHHHH
T ss_pred             cCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEECCeeEEEEEeeCCHHHhhcCCCCceeeccceeEeeecCHHHHH
Confidence            777889999999999999988888766 677877643312478888886653         1234578999999999997


Q ss_pred             hcc
Q 018060          186 RIE  188 (361)
Q Consensus       186 ~l~  188 (361)
                      .+.
T Consensus       273 ~i~  275 (405)
T 3oc9_A          273 KAA  275 (405)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            653

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.45  E-value=6.6e-13  Score=112.47  Aligned_cols=87  Identities=11%  Similarity=0.105  Sum_probs=74.4

Q ss_pred             eEEcCCCEECCCcEECC---CcEECCCCEECCCcEE----eceEEccCcEECCCCEEecc--------------------
Q 018060          255 VLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL----SRCTVMRGVRIKKHACISSS--------------------  307 (361)
Q Consensus       255 ~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i----~~~~i~~~~~i~~~~~i~~~--------------------  307 (361)
                      +.|++++.|++++.+..   ++.||++|.|++.+.+    .++.|+++|.|+++++|.++                    
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v  138 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV  138 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence            77788888888777753   4899999999996555    57899999999999999864                    


Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +||++++||.++.|.++++||++++|++++++..
T Consensus       139 ~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~  172 (215)
T 2wlg_A          139 IIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYK  172 (215)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEECS
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCCEEcC
Confidence            8999999999999999999999999999999864

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.45  E-value=6.8e-13  Score=114.79  Aligned_cols=84  Identities=13%  Similarity=0.237  Sum_probs=46.5

Q ss_pred             EEcCCCEECCCcEECCCcEECCCCEECCCcEEec-----eEEccCcEECCCCEEe------------------------c
Q 018060          256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACIS------------------------S  306 (361)
Q Consensus       256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~------------------------~  306 (361)
                      .|+++++|+++|.|.+++.||++|.|+++|.|..     .+||++|.|+++++|.                        +
T Consensus        61 ~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~  140 (247)
T 1qre_A           61 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYA  140 (247)
T ss_dssp             EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEES
T ss_pred             EECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCc
Confidence            3444444444444444455555555555555542     2566666666666664                        2


Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      ++||+++.||++|.|.++++||++++||+++.+
T Consensus       141 v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I  173 (247)
T 1qre_A          141 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFV  173 (247)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence            566666666666666555666666666666554

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.44  E-value=4.2e-13  Score=116.45  Aligned_cols=108  Identities=10%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             cceEEcCCCEECCCcEE----CCCcEECCCCEECCCcEEe---ceEEccCcEECCCCEEe----ccEEcCCCEECCCcEE
Q 018060          253 GNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACIS----SSIIGWHSTVGQWARV  321 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~----~~~i~~~~~ig~~~~i  321 (361)
                      .++.|++++.|.+.+.+    .+++.||++|.|++++.|.   ++.||++|.|++++.|.    +++||++|.||+++.|
T Consensus        62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I  141 (252)
T 3jqy_B           62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVIL  141 (252)
T ss_dssp             CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEE
T ss_pred             CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEE
Confidence            45667777776666665    4566788888888888874   68899999999999998    7899999999998877


Q ss_pred             cCc-------------------eEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060          322 ENM-------------------TILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       322 ~~~-------------------~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      .+.                   ++||++|.||+++.+       .++.|++++.|.+++|+++++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~~~~  206 (252)
T 3jqy_B          142 RASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCAA  206 (252)
T ss_dssp             ECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             ecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcccCCCCEE
Confidence            664                   577777777777765       367778888888899988765

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.44  E-value=2.3e-12  Score=106.52  Aligned_cols=87  Identities=14%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             cceEEcCCCEE--CCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEE-------------------eccEEcC
Q 018060          253 GNVLVHESAQI--GEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI-------------------SSSIIGW  311 (361)
Q Consensus       253 ~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i-------------------~~~~i~~  311 (361)
                      .+++|.+++.+  +.++.||++++|+.+|+|.+.+.   ..||++|.|++++.|                   .+++||+
T Consensus        61 ~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~---i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~  137 (188)
T 3srt_A           61 KQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCK---IEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGD  137 (188)
T ss_dssp             SCEEECSCEEESSSTTEEECTTEEECTTEEEECSSC---EEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred             CCCEEcCCEEEEeCCCeEECCcccccCceEEecCCc---eEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECC
Confidence            33444444433  33444444444444444443322   257888888888887                   3478999


Q ss_pred             CCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060          312 HSTVGQWARVENMTILGEDVHVCDEIYSNGG  342 (361)
Q Consensus       312 ~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~  342 (361)
                      +|+||.++.|.++++||++++||+++++...
T Consensus       138 ~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d  168 (188)
T 3srt_A          138 NVWIGGGVIITPGITIGDNVVIGAGSVVTKD  168 (188)
T ss_dssp             SCEECTTCEECTTCEECSSEEECTTCEECSC
T ss_pred             CcEEcCCCEECCCcEECCCCEECCCCEECcc
Confidence            9999999999988999999999999998653

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=99.44  E-value=1.5e-12  Score=122.26  Aligned_cols=181  Identities=18%  Similarity=0.244  Sum_probs=128.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc--------C------CCEEEEEcccChHHHHHH
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------G------VTEVVLAINYQPEVMLNF   63 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~--------g------i~~i~vv~~~~~~~~~~~   63 (361)
                      |.+|+||||.|+||+.   ..||+|+|++   |+|+++++++++.+.        |      +..+++.+....+.++++
T Consensus       104 vavvlLaGG~GTRLg~---~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~  180 (486)
T 2yqc_A          104 VAVLLMAGGQGTRLGS---SAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESF  180 (486)
T ss_dssp             EEEEEEEESBCGGGTC---SSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHH
T ss_pred             eEEEEEcCCccccCCC---CCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHH
Confidence            4689999999999965   8899999999   999999999999886        5      666666666677889999


Q ss_pred             HHHhhhccCc---EEEEecC----------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCee
Q 018060           64 LKEFEAKLGI---KIICSQE----------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVI  113 (361)
Q Consensus        64 l~~~~~~~~~---~i~~~~~----------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~  113 (361)
                      |++. ..+|+   .+.+..|                      ..+.|+++.+....     +.+...+-+++.+...|.+
T Consensus       181 ~~~~-~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~  259 (486)
T 2yqc_A          181 FIEN-NYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNC  259 (486)
T ss_dssp             HHHT-GGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBT
T ss_pred             Hhhc-cccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCc
Confidence            9872 33343   2322211                      14678888776553     2222233348888999984


Q ss_pred             ec--cCHHHHHHHHHHcCCceEEEEEEccCC-CCceeEEEcCCCC--eEeeeeecCCC------------CCCCeEEEEE
Q 018060          114 SE--YPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEESTG--KVEKFVEKPKL------------FVGNKINAGI  176 (361)
Q Consensus       114 ~~--~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~--~v~~~~ek~~~------------~~~~~~~~Gi  176 (361)
                      ..  .| -.++.+|..+++++++.+.+..++ ...|.+.....+|  +|.+|.|+|..            ......+++.
T Consensus       260 l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~  338 (486)
T 2yqc_A          260 LVKVAD-PIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVN  338 (486)
T ss_dssp             TCCTTC-HHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEE
T ss_pred             eeeccC-HHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccceeEEE
Confidence            43  34 347888888899998888877444 5678777542114  58888888741            1246789999


Q ss_pred             EEeCHhhHhh
Q 018060          177 YLLNPAVLDR  186 (361)
Q Consensus       177 yi~~~~~l~~  186 (361)
                      |+|+.++++.
T Consensus       339 ~~~~l~~L~~  348 (486)
T 2yqc_A          339 HYYSVEFLNK  348 (486)
T ss_dssp             EEEEHHHHHH
T ss_pred             EEEeHHHHHH
Confidence            9999998876

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.43  E-value=1.7e-12  Score=114.98  Aligned_cols=90  Identities=22%  Similarity=0.205  Sum_probs=37.5

Q ss_pred             cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcC--------CCEECCC
Q 018060          249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGW--------HSTVGQW  318 (361)
Q Consensus       249 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~--------~~~ig~~  318 (361)
                      +.+.+++.|++++.|+++++|+++ +|+.++.||++|.|. ++.|++++.||++|.|.. +.|+.        .+.||++
T Consensus       130 ~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~  208 (304)
T 3eg4_A          130 FRAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDN  208 (304)
T ss_dssp             CEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTT
T ss_pred             cEEcCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCC
Confidence            334444444444444444444322 444444444444444 244444444444444443 23333        3444444


Q ss_pred             cEEcCceEECCCeEECCceEE
Q 018060          319 ARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      |.|+.+++|..++.||++++|
T Consensus       209 v~IG~~a~I~~gv~IG~~avI  229 (304)
T 3eg4_A          209 CFIGARSEVVEGCIVREGSVL  229 (304)
T ss_dssp             CEECTTCEECTTCEECTTCEE
T ss_pred             CEECCCCEEcCCcEECCCcEE
Confidence            444444444444444444444

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.43  E-value=1e-12  Score=109.30  Aligned_cols=35  Identities=14%  Similarity=0.083  Sum_probs=30.2

Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++||++|+||.++.|.+++.||++++|++++++..
T Consensus       133 v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  167 (195)
T 3nz2_A          133 IVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQ  167 (195)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             eEECCCCEEcCCCEECCCCEECCCCEECCCCEEcc
Confidence            58889999999999988899999999998888854

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.43  E-value=1.2e-12  Score=123.97  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=38.6

Q ss_pred             EEccCcEECCCCEEe--------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          291 TVMRGVRIKKHACIS--------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       291 ~i~~~~~i~~~~~i~--------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .|+++|.||.++.+.        +++||++|+||.++.|.+++.||++++||+++++..
T Consensus       374 ~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~  432 (459)
T 4fce_A          374 EIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTR  432 (459)
T ss_dssp             EECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECS
T ss_pred             EECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEcc
Confidence            455555555555554        368888888888888888888888888888888864

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.42  E-value=2.1e-12  Score=112.90  Aligned_cols=98  Identities=23%  Similarity=0.324  Sum_probs=80.8

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe-------------cc
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-------------SS  307 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~  307 (361)
                      ...+++++.+.+++.|++++.|+++|+|++++.||++|.|+++|.|. ++.||++|.|+++++|.             ++
T Consensus         5 ~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~   84 (262)
T 2qia_A            5 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRV   84 (262)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEE
T ss_pred             CCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccce
Confidence            34567788888888888888888888888889999999999999998 79999999999999996             47


Q ss_pred             EEcCCCEECCCcEEcC-------ceEECCCeEECCceEE
Q 018060          308 IIGWHSTVGQWARVEN-------MTILGEDVHVCDEIYS  339 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~-------~~~ig~~~~v~~~~~i  339 (361)
                      +||+++.|++++.|..       .++||+++.+++++.+
T Consensus        85 ~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I  123 (262)
T 2qia_A           85 EIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHI  123 (262)
T ss_dssp             EECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEE
T ss_pred             EECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEE
Confidence            8999999999888864       2677777666666555

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.42  E-value=1.2e-12  Score=117.11  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=68.3

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe----------------
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS----------------  305 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~----------------  305 (361)
                      ...+.+++.|.+++.|+++++|+++|.|+ +|+|++++.|+++++|.+++|+++|.|+.++++.                
T Consensus        71 ~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~  149 (334)
T 2pig_A           71 GTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHA  149 (334)
T ss_dssp             TCEECTTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------C
T ss_pred             CcEECCCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccC
Confidence            45567788888888888888888888886 8889999999988888887777666655555444                


Q ss_pred             ------------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          306 ------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       306 ------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                                  ++.|+++|.|+.+|.|. +++|++++.|++++.+.+
T Consensus       150 ~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~  196 (334)
T 2pig_A          150 QILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEG  196 (334)
T ss_dssp             CCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEEC
T ss_pred             CCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECC
Confidence                        44455555555555555 355566666666655543

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.42  E-value=2.8e-12  Score=106.31  Aligned_cols=52  Identities=13%  Similarity=0.076  Sum_probs=41.1

Q ss_pred             eEEccCcEECCCCEEe-------------------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          290 CTVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       290 ~~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +.||++|.|++++.|.                   +++||++|+||.++.|.+++.||++++|++++++..
T Consensus        99 v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  169 (190)
T 3hjj_A           99 VRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTK  169 (190)
T ss_dssp             EEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             eEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECc
Confidence            3466666666666663                   257999999999999998899999999999998864

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.41  E-value=1.2e-12  Score=109.21  Aligned_cols=51  Identities=18%  Similarity=0.081  Sum_probs=40.4

Q ss_pred             EEccCcEECCCCEEe-------------------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          291 TVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       291 ~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .||++|.||++|.|.                   +.+||++|+||.++.|.+++.||++++||+++++..
T Consensus        96 ~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  165 (199)
T 3ftt_A           96 TIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTK  165 (199)
T ss_dssp             EECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             EECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECc
Confidence            566666666666662                   247899999999999988899999999999988854

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.41  E-value=1.8e-12  Score=114.52  Aligned_cols=63  Identities=21%  Similarity=0.332  Sum_probs=37.0

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEE
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI  304 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  304 (361)
                      ...+++++.|.+++.|++++.|+++|+|++++.||++|.|++++.|. ++.||++|.|+++++|
T Consensus        22 ~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I   85 (283)
T 4eqy_A           22 MSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASV   85 (283)
T ss_dssp             -CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEE
T ss_pred             CcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEE
Confidence            34466666666666666666666666666666666666555555555 4555555555555555

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.40  E-value=3.4e-12  Score=111.74  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=48.8

Q ss_pred             CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEE-------------eceEEccCcEECCCCEEe--------c
Q 018060          248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-------------SRCTVMRGVRIKKHACIS--------S  306 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------------~~~~i~~~~~i~~~~~i~--------~  306 (361)
                      .+.|.+++.|+++++|+++++|.+++.||++|.|+++|.|             .++.|++++.|++++.|.        .
T Consensus        25 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~  104 (270)
T 1j2z_A           25 FCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKK  104 (270)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSE
T ss_pred             CCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCcc
Confidence            3333334444444444444444444555555555555555             244555555555555554        2


Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  339 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i  339 (361)
                      +.||+++.|++++.|..+++||++++++.++.+
T Consensus       105 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  137 (270)
T 1j2z_A          105 TLIGDKNLLMAYVHVAHDCVIGSHCILANGVTL  137 (270)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             EEECCCcEECcccccCCCcEECCCcEEcCCccc
Confidence            466666666666666555666666666655554

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.40  E-value=7e-13  Score=116.78  Aligned_cols=96  Identities=22%  Similarity=0.297  Sum_probs=60.9

Q ss_pred             ecceEEcCCCEECCCcEE--CCCcEECCCCEECCCcEEeceEEccCcEECCCC------------EEeccEEcCCCEECC
Q 018060          252 VGNVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHA------------CISSSIIGWHSTVGQ  317 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~------------~i~~~~i~~~~~ig~  317 (361)
                      ..++.|++++.||++++|  +.+++||++|+||++|.|     +++|+|+.++            .-++.+||++++||+
T Consensus       188 ~~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I-----~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGa  262 (310)
T 3f1x_A          188 ETGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKL-----YQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYS  262 (310)
T ss_dssp             HHSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEE-----ETTCEEECC--------------CCSCEECTTCEECT
T ss_pred             cCCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEE-----CCCCEECCCccccccccccccCCCCCCEECCCcEEcC
Confidence            344555555555555555  445555555555555554     3333333333            123358999999999


Q ss_pred             CcEEcCceEECCCeEECCceEEcCcEEccCceeecc
Q 018060          318 WARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSS  353 (361)
Q Consensus       318 ~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~  353 (361)
                      +|+|.++++||++++||+++++.. .+-+++++..+
T Consensus       263 ga~Il~gv~IGd~a~IGagsvV~~-dVp~~svv~Gn  297 (310)
T 3f1x_A          263 NATILGRVTIGKGATVGGNIWVTE-NVPAGSRIVQR  297 (310)
T ss_dssp             TCEEESSCEECTTCEECSSCEECS-CBCTTCEECCC
T ss_pred             CCEECCCcEECCCCEECCCCEECC-ccCCCcEEECC
Confidence            999998899999999999999974 34555555443

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.38  E-value=1.9e-12  Score=116.51  Aligned_cols=126  Identities=17%  Similarity=0.075  Sum_probs=85.3

Q ss_pred             ecceEEEcCC--HHHHHHHHHHHHHhhh---h----ccc---cc-cc-CCcEEecceEEcCCCEECCCcEECCC-cEECC
Q 018060          213 LPGFWMDIGQ--PRDYITGLRLYLDSLR---K----KSS---LK-LA-TGANIVGNVLVHESAQIGEGCLIGPD-VAVGP  277 (361)
Q Consensus       213 ~~~~~~~i~t--~~dy~~a~~~~l~~~~---~----~~~---~~-~~-~~~~i~~~~~i~~~~~i~~~~~i~~~-~~ig~  277 (361)
                      ...+|.+.++  |++|.......+..-.   .    ..+   .. .+ .++.|.+++.|++++.|+++++|+++ ++|+.
T Consensus       168 ~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~  247 (387)
T 2rij_A          168 SNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYVNF  247 (387)
T ss_dssp             CCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSSCEECT
T ss_pred             ceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCeeEECC
Confidence            3468888888  6777666655442110   0    000   01 12 26677777777777777777777764 77777


Q ss_pred             CCE-ECCCcEE----e-ceEEccCcEECCCCEEe----c-----cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          278 GCV-VESGVRL----S-RCTVMRGVRIKKHACIS----S-----SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       278 ~~~-i~~~~~i----~-~~~i~~~~~i~~~~~i~----~-----~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++. ||+ |.|    + +++||++|.|++++.|.    +     ++||++|+||.++.  +++.||++|+||+++++..
T Consensus       248 nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~  323 (387)
T 2rij_A          248 NAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLE  323 (387)
T ss_dssp             TCEESSC-CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECT
T ss_pred             CcEEECC-EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECC
Confidence            776 666 554    3 57777778887777543    3     68999999999998  5699999999999998864

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.37  E-value=9.5e-13  Score=114.38  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=46.0

Q ss_pred             ceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEeceEEccCcEECCCCE---EeccEEcCCCEECCCcEEcCceEEC
Q 018060          254 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILG  328 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~ig  328 (361)
                      ++.|+++++||++++|+  .+++||++|+||++|.|.     ++|+|+.+..   .++++||++|+||.+++|.++++||
T Consensus       164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~-----~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG  238 (287)
T 3mc4_A          164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSIL-----HGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVG  238 (287)
T ss_dssp             CCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEE-----TTCEEEC-----CCCSCEECTTCEECTTCEEESSCEEC
T ss_pred             CeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEc-----CCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEEC
Confidence            44444444444444444  344444444444444442     3333332211   1236777788888888887778888


Q ss_pred             CCeEECCceEEc
Q 018060          329 EDVHVCDEIYSN  340 (361)
Q Consensus       329 ~~~~v~~~~~i~  340 (361)
                      ++++||+++++.
T Consensus       239 ~~a~IGagsvV~  250 (287)
T 3mc4_A          239 QCSKIAAGSVVL  250 (287)
T ss_dssp             TTCEECTTCEEC
T ss_pred             CCCEECCCCEEc
Confidence            888888887775

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.37  E-value=3.4e-12  Score=108.08  Aligned_cols=108  Identities=14%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             cceEEcCCCEECCC-cEECC---CcEECCCCEECCCcEEe----ceEEccCcEECCCCEE----eccEEcCCCEECCCcE
Q 018060          253 GNVLVHESAQIGEG-CLIGP---DVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI----SSSIIGWHSTVGQWAR  320 (361)
Q Consensus       253 ~~~~i~~~~~i~~~-~~i~~---~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i----~~~~i~~~~~ig~~~~  320 (361)
                      .+++|+++++|.+. +.|.+   ++.||++|.|++++.+.    ++.||++|.|++++.+    .+++||++|.|++++.
T Consensus        35 ~~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~  114 (215)
T 2wlg_A           35 NSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYE  114 (215)
T ss_dssp             CEEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEE
T ss_pred             CEEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEE
Confidence            35778888888776 55654   38888888888888886    3889999999885555    4578999999998888


Q ss_pred             EcCc-------------------eEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060          321 VENM-------------------TILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       321 i~~~-------------------~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~  360 (361)
                      |...                   ++||+++.||+++.+.       ++.|.+++.|.+++|+++++
T Consensus       115 I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~vp~~~i~  180 (215)
T 2wlg_A          115 IRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCV  180 (215)
T ss_dssp             EESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSCCCCCSCE
T ss_pred             EECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCccCCCeEE
Confidence            8753                   5777777777777663       57778888888899988775

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.37  E-value=4.2e-12  Score=105.70  Aligned_cols=35  Identities=11%  Similarity=0.142  Sum_probs=29.9

Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++||++|+||.++.|.+++.||++++||+++++..
T Consensus       132 v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~  166 (203)
T 1krr_A          132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTK  166 (203)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cEECCCeEECCCCEEeCCeEECCCCEECCCCEECC
Confidence            57888888888888888888888888888888854

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.35  E-value=1e-12  Score=111.51  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=31.7

Q ss_pred             ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       306 ~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +++||++|+||.+|.|.+++.||++++||+++++..
T Consensus       119 ~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~  154 (220)
T 4hur_A          119 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK  154 (220)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcc
Confidence            467999999999999999999999999999999853

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.35  E-value=4.3e-12  Score=104.09  Aligned_cols=53  Identities=15%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             eEEccCcEECCCCEEe-------------------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060          290 CTVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  342 (361)
Q Consensus       290 ~~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~  342 (361)
                      ..||++|.|++++.|.                   +++||++|+||.++.|.+++.||++++|++++++...
T Consensus        93 i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d  164 (182)
T 1ocx_A           93 IRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD  164 (182)
T ss_dssp             EEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             eEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc
Confidence            4566677777766662                   4689999999999999988999999999999998754

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.35  E-value=3.4e-12  Score=105.04  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             ceEEccCcEECCCCEEe-------------------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060          289 RCTVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  342 (361)
Q Consensus       289 ~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~  342 (361)
                      +..||++|.|+++|.|.                   +++||++|+||.++.|.++++||++++|++++++...
T Consensus        94 ~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~  166 (185)
T 2p2o_A           94 EVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD  166 (185)
T ss_dssp             CEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             ceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            34566666666666663                   4689999999999999988999999999999998754

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.35  E-value=4.1e-12  Score=121.48  Aligned_cols=93  Identities=10%  Similarity=0.092  Sum_probs=76.0

Q ss_pred             CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec--------cEEcCCCEECCCc
Q 018060          248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS--------SIIGWHSTVGQWA  319 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~--------~~i~~~~~ig~~~  319 (361)
                      .+.+.+++.|++++.||.++.+ ++++||++++|+..+.+++++|+++|.||.++.+.|        ++||++|.||.++
T Consensus       346 ~~~i~~~~~i~~~v~IG~~v~i-k~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~  424 (501)
T 3st8_A          346 FTYLRPGTALGADGKLGAFVEV-KNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDT  424 (501)
T ss_dssp             SEEECTTCEECTTCEEEETEEE-ESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTC
T ss_pred             ceeecCCcEEccccccCCeEEE-ccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCC
Confidence            3334444444444444444444 578899999999999999999999999999999864        7999999999999


Q ss_pred             EEcCceEECCCeEECCceEEcC
Q 018060          320 RVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       320 ~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .|.+++.||+++.|++|++|..
T Consensus       425 ~l~~~v~Ig~~~~i~ags~v~~  446 (501)
T 3st8_A          425 MFVAPVTIGDGAYTGAGTVVRE  446 (501)
T ss_dssp             EEESSEEECTTCEECTTCEECS
T ss_pred             EEcCCcEECCCCEECCCCEECc
Confidence            9999999999999999999964

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.30  E-value=1.8e-11  Score=109.20  Aligned_cols=63  Identities=17%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS  305 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~  305 (361)
                      ..+++++.|.+++.|++++.|+++|+|++++.||++|.|++++.|. ++.||++|.|+++++|.
T Consensus         8 ~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~   71 (305)
T 3t57_A            8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVG   71 (305)
T ss_dssp             -CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEEC
T ss_pred             CeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEec
Confidence            3456666666666666666666666666666666666666666665 45555555555555554

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.29  E-value=3.5e-12  Score=111.36  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=15.3

Q ss_pred             cEEcCCCEECCCcEEcCc--------eEECCCeEECCceEE
Q 018060          307 SIIGWHSTVGQWARVENM--------TILGEDVHVCDEIYS  339 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~--------~~ig~~~~v~~~~~i  339 (361)
                      ++||+++.|++++.|.+.        ++||++|.||+++.|
T Consensus       231 v~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI  271 (347)
T 3r5d_A          231 VFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI  271 (347)
T ss_dssp             CEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE
T ss_pred             EEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE
Confidence            444444444444444432        444444444444444

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.29  E-value=3.4e-11  Score=100.11  Aligned_cols=16  Identities=19%  Similarity=0.054  Sum_probs=8.8

Q ss_pred             EEccCcEECCCCEEec
Q 018060          291 TVMRGVRIKKHACISS  306 (361)
Q Consensus       291 ~i~~~~~i~~~~~i~~  306 (361)
                      .||++|.||+++.|..
T Consensus        98 ~IG~~~~Ig~~~~I~~  113 (195)
T 3nz2_A           98 TIGDHVLIGPSTQFYT  113 (195)
T ss_dssp             EECTTCEECTTCEEEC
T ss_pred             EECCCCEECCCCEEec
Confidence            4555555555555544

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.27  E-value=8e-12  Score=117.97  Aligned_cols=91  Identities=16%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCC---------------
Q 018060          248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH---------------  312 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~---------------  312 (361)
                      .+.+.+++.|++++.| .++.| .++.||++|.|+. +.|.+++||++|.||++|+|.++++..+               
T Consensus       308 ~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~  384 (451)
T 1yp2_A          308 SAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAK  384 (451)
T ss_dssp             SSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTT
T ss_pred             CCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCccccccccccccc
Confidence            4445556666666666 56777 5789999999986 8888999999999999999999887777               


Q ss_pred             ----CEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060          313 ----STVGQWARVENMTILGEDVHVCDEIYSNGG  342 (361)
Q Consensus       313 ----~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~  342 (361)
                          +.||+++.|.+ ++||++|.||+++.+.+.
T Consensus       385 g~~~~~Ig~~~~i~~-~~Ig~~~~IG~~~~i~~~  417 (451)
T 1yp2_A          385 GSVPIGIGKNCHIKR-AIIDKNARIGDNVKIINK  417 (451)
T ss_dssp             TCCCSEECTTCEEES-EEECTTCEECTTCEECCS
T ss_pred             CceeEEECCCCEEec-cEeCCCcEECCCCEEeCC
Confidence                99999999987 999999999999999753

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.27  E-value=1e-11  Score=108.15  Aligned_cols=85  Identities=11%  Similarity=0.067  Sum_probs=45.7

Q ss_pred             CcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCce
Q 018060          248 GANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT  325 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~  325 (361)
                      +..|++++.||++++|+.  +++|+++++||++|.|+.++.|+++.    ...    ..++++||+++.||.+++|.+++
T Consensus       157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~----~~~----~~~~~~IGd~v~IGaga~Ilggv  228 (289)
T 1t3d_A          157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTG----KSG----GDRHPKIREGVMIGAGAKILGNI  228 (289)
T ss_dssp             SCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCS----SSC----SSCSCEECTTCEECTTCEEESSC
T ss_pred             ceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCc----ccc----CCCCeEECCCeEECCCCEEecCc
Confidence            444444555555555542  34444444444444444444443210    000    01235777777777777777777


Q ss_pred             EECCCeEECCceEEc
Q 018060          326 ILGEDVHVCDEIYSN  340 (361)
Q Consensus       326 ~ig~~~~v~~~~~i~  340 (361)
                      +||++++||+|+++.
T Consensus       229 ~IG~~a~IGagsvV~  243 (289)
T 1t3d_A          229 EVGRGAKIGAGSVVL  243 (289)
T ss_dssp             EECTTCEECTTCEEC
T ss_pred             EECCCCEECCCCEEc
Confidence            777777777777774

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.27  E-value=3.6e-11  Score=99.58  Aligned_cols=93  Identities=24%  Similarity=0.352  Sum_probs=57.1

Q ss_pred             cceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEec-------------eEEccCcEECCCCEEec-cEEcCCCEEC
Q 018060          253 GNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS-SIIGWHSTVG  316 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~-~~i~~~~~ig  316 (361)
                      .++.||+++.|+++|+|..  ++.||++|.|+++|.|.+             ..++..++||++|.|+. ++|.+++.||
T Consensus        77 ~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG  156 (190)
T 3hjj_A           77 YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIG  156 (190)
T ss_dssp             TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEEC
T ss_pred             CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEEC
Confidence            4566666666666666654  457777777777777742             12344556666666653 5566666666


Q ss_pred             CCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          317 QWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       317 ~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                      ++|.|+.+++|.++  |.+++++.|   .|.+.+
T Consensus       157 ~~~vIgagsvV~~d--vp~~~v~~G---~Pa~~i  185 (190)
T 3hjj_A          157 DNAVIASGAVVTKD--VPNNVVVGG---NPAKVI  185 (190)
T ss_dssp             TTCEECTTCEECSC--BCTTEEEET---TTTEEE
T ss_pred             CCCEECCCCEECcc--cCCCCEEEc---cCCEEe
Confidence            66666666666655  456666655   444444

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.26  E-value=1.2e-11  Score=109.17  Aligned_cols=45  Identities=20%  Similarity=0.284  Sum_probs=24.1

Q ss_pred             ccccCCcEEecceEE--cCCCEECCCcEECCCcEECCCCEECCCcEE
Q 018060          243 LKLATGANIVGNVLV--HESAQIGEGCLIGPDVAVGPGCVVESGVRL  287 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  287 (361)
                      ..+++++.|+++++|  +.+++||++|.||+++.|+.+|+||+++.+
T Consensus       164 v~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~i  210 (313)
T 3q1x_A          164 IDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQ  210 (313)
T ss_dssp             CEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCC
T ss_pred             eEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEE
Confidence            345555555555555  444555555555555555555555554444

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.26  E-value=5.5e-11  Score=99.18  Aligned_cols=103  Identities=11%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             ccCCcEE--ecceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEece-------------EEccCcEECCCCEEec-
Q 018060          245 LATGANI--VGNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRC-------------TVMRGVRIKKHACISS-  306 (361)
Q Consensus       245 ~~~~~~i--~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~-------------~i~~~~~i~~~~~i~~-  306 (361)
                      +.+.+.+  ..++.||++++|+++|+|.  ..++||++|.||++|.|.++             .+...++||++|.|+. 
T Consensus        63 i~~~~~~~~g~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~  142 (199)
T 3ftt_A           63 ISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGH  142 (199)
T ss_dssp             ECSSEEESSSTTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTT
T ss_pred             EeCCEEEEecCCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCC
Confidence            3344444  3566666666666666663  33677777777777777422             2345566666666653 


Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS  352 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~  352 (361)
                      ++|.++++||++|.|+.+++|.++  |.+++++.|   .|.+.+.+
T Consensus       143 ~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G---~Pak~i~~  183 (199)
T 3ftt_A          143 VAVLPGVTIGEGSVIGAGSVVTKD--IPPHSLAVG---NPCKVVRK  183 (199)
T ss_dssp             CEECTTCEECTTCEECTTCEECSC--BCTTEEEET---TTTEEEEE
T ss_pred             CEECCCCEECCCCEECCCCEECcc--cCCCCEEEE---ECCEEEee
Confidence            666677777777777777777766  477777766   56655544

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.25  E-value=1.3e-11  Score=107.07  Aligned_cols=15  Identities=7%  Similarity=-0.031  Sum_probs=6.2

Q ss_pred             eEECCCeEECCceEE
Q 018060          325 TILGEDVHVCDEIYS  339 (361)
Q Consensus       325 ~~ig~~~~v~~~~~i  339 (361)
                      ++||++|+||+++.|
T Consensus       234 V~IGDnv~IGanAtI  248 (332)
T 3fsy_A          234 ISIGKRCLLGANSGL  248 (332)
T ss_dssp             CEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCCEE
Confidence            444444444444443

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.24  E-value=7e-11  Score=96.84  Aligned_cols=94  Identities=20%  Similarity=0.335  Sum_probs=61.5

Q ss_pred             ecceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEec-------------eEEccCcEECCCCEEec-cEEcCCCEE
Q 018060          252 VGNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS-SIIGWHSTV  315 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~-~~i~~~~~i  315 (361)
                      ..++.||+++.|+++|+|.  .++.||++|.|+++|.|..             ..+...++||++|.|+. ++|..+++|
T Consensus        70 g~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~I  149 (182)
T 1ocx_A           70 GYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI  149 (182)
T ss_dssp             STTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEE
T ss_pred             CCCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEE
Confidence            3566677777777777663  4567888888888888842             12244566666666654 566667777


Q ss_pred             CCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          316 GQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       316 g~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                      |++|.|+.+++|.++  |++++++.|   .|.+.+
T Consensus       150 G~~~vIgagsvV~~d--ip~~~vv~G---~Pa~~i  179 (182)
T 1ocx_A          150 GDNVVVASGAVVTKD--VPDNVVVGG---NPARII  179 (182)
T ss_dssp             CTTCEECTTCEECSC--BCSSEEEET---TTTEEE
T ss_pred             CCCCEECCCCEECCc--CCCCcEEEc---cccEEe
Confidence            777777777777666  677777766   454443

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.22  E-value=9.7e-11  Score=101.13  Aligned_cols=26  Identities=12%  Similarity=0.361  Sum_probs=22.5

Q ss_pred             cEE--EEeCCeeeccCHHHHHHHHHHcC
Q 018060          104 PFF--VLNSDVISEYPFAEMIEFHKAHG  129 (361)
Q Consensus       104 ~~l--v~~~D~~~~~~l~~~~~~~~~~~  129 (361)
                      ++|  ++++|.+...+|.+.+.+|.+.+
T Consensus        21 P~L~~~l~~~IL~~~~l~~aLa~~la~k   48 (267)
T 1ssq_A           21 PMLASFFHSTILKHQNLGGALSYLLANK   48 (267)
T ss_dssp             HHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred             CHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence            788  88999999999999999887764

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.22  E-value=8.4e-11  Score=101.52  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             CcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCce
Q 018060          248 GANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT  325 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~  325 (361)
                      +..|++++.||++++|+.  +++|++++.||++|.|++++.|+++..        ....++++||++++||.+++|.+++
T Consensus       137 g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~--------~~~~~~~~IGd~v~IGaga~Il~gv  208 (267)
T 1ssq_A          137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGK--------ESGDRHPKVREGVMIGAGAKILGNI  208 (267)
T ss_dssp             SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSS--------SCSSCSCEECTTCEECTTCEEESSC
T ss_pred             ceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcc--------cCCCCCeEECCCeEEcCCCEEeCCc
Confidence            344444445555555542  344444444444444444444432100        0011235666677777777766667


Q ss_pred             EECCCeEECCceEEc
Q 018060          326 ILGEDVHVCDEIYSN  340 (361)
Q Consensus       326 ~ig~~~~v~~~~~i~  340 (361)
                      +||++++||+++++.
T Consensus       209 ~IG~~a~IGagsvV~  223 (267)
T 1ssq_A          209 EVGKYAKIGANSVVL  223 (267)
T ss_dssp             EECTTCEECTTCEEC
T ss_pred             EECCCCEECCCCEEc
Confidence            777777777766664

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.22  E-value=1.4e-10  Score=101.02  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             ccccccCCcEEecceEEc--CCCEECCCcEECCCcEECCCCEECCCcEE---eceEEccCcEECCCCEEec-cEEcCCCE
Q 018060          241 SSLKLATGANIVGNVLVH--ESAQIGEGCLIGPDVAVGPGCVVESGVRL---SRCTVMRGVRIKKHACISS-SIIGWHST  314 (361)
Q Consensus       241 ~~~~~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~~-~~i~~~~~  314 (361)
                      ....+++++.|+++++|+  .+++|+++|+||+++.|+.+|+|+.....   .+++|+++|.||.++.|.+ ++||++|.
T Consensus       156 ~g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~  235 (289)
T 1t3d_A          156 FQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAK  235 (289)
T ss_dssp             HSCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCE
T ss_pred             cceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCE
Confidence            345688999999999998  57899999999999999999999875432   2467788888887777764 45555555


Q ss_pred             ECCCcEEcC
Q 018060          315 VGQWARVEN  323 (361)
Q Consensus       315 ig~~~~i~~  323 (361)
                      ||.++++..
T Consensus       236 IGagsvV~~  244 (289)
T 1t3d_A          236 IGAGSVVLQ  244 (289)
T ss_dssp             ECTTCEECS
T ss_pred             ECCCCEEcc
Confidence            555554443

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.21  E-value=7.3e-11  Score=102.54  Aligned_cols=78  Identities=19%  Similarity=0.184  Sum_probs=57.1

Q ss_pred             cCCcEEecceEEcCCCEEC--CCcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCCEEec-cEEcCCC
Q 018060          246 ATGANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHS  313 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~  313 (361)
                      ..++.|++++.||++++|+  .+++|++++.||++|.|++++.|++         +.|+++|.||.+++|.+ ++||++|
T Consensus       162 ~~gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a  241 (287)
T 3mc4_A          162 IFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCS  241 (287)
T ss_dssp             HTCCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTC
T ss_pred             ccCeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCC
Confidence            4567788888888888887  6788888888888888888888875         57777777777777664 5555555


Q ss_pred             EECCCcEEcC
Q 018060          314 TVGQWARVEN  323 (361)
Q Consensus       314 ~ig~~~~i~~  323 (361)
                      +||.+++|..
T Consensus       242 ~IGagsvV~k  251 (287)
T 3mc4_A          242 KIAAGSVVLK  251 (287)
T ss_dssp             EECTTCEECS
T ss_pred             EECCCCEEcc
Confidence            5555555543

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.19  E-value=8.8e-11  Score=96.58  Aligned_cols=88  Identities=22%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             ecceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEece-------------EEccCcEECCCCEEec-cEEcCCCEE
Q 018060          252 VGNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRC-------------TVMRGVRIKKHACISS-SIIGWHSTV  315 (361)
Q Consensus       252 ~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~-------------~i~~~~~i~~~~~i~~-~~i~~~~~i  315 (361)
                      ..++.||+++.|+.+|+|.  .++.||++|.|+++|.|...             .+...++||++|.|+. ++|..+++|
T Consensus        72 g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~I  151 (185)
T 2p2o_A           72 GYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTI  151 (185)
T ss_dssp             STTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEE
T ss_pred             cCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEE
Confidence            4667777777777777774  56788888888888888421             1233444554444443 444555555


Q ss_pred             CCCcEEcCceEECCCeEECCceEEcC
Q 018060          316 GQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       316 g~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      |++|.|+.+++|.++  |++++++.+
T Consensus       152 G~~~vIgagsvV~~~--vp~~~vv~G  175 (185)
T 2p2o_A          152 GDNAVIASGAVVTKD--VPANAVVGG  175 (185)
T ss_dssp             CTTCEECTTCEECSC--BCTTEEEEE
T ss_pred             CCCCEECCCCEECCC--CCCCcEEEc
Confidence            555555555555554  556666654

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.19  E-value=1.1e-10  Score=102.77  Aligned_cols=88  Identities=24%  Similarity=0.255  Sum_probs=49.9

Q ss_pred             CCcEEecceEEcCCCEE--CCCcEECCCcEECCCCEECCCcEEec-e-----------------EEccCcEECCCCEEec
Q 018060          247 TGANIVGNVLVHESAQI--GEGCLIGPDVAVGPGCVVESGVRLSR-C-----------------TVMRGVRIKKHACISS  306 (361)
Q Consensus       247 ~~~~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~~-~-----------------~i~~~~~i~~~~~i~~  306 (361)
                      .++.|++++.|+++++|  +.+++|++++.||++|.|+++|.|++ +                 .|+++|.||.+|+|. 
T Consensus       189 ~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il-  267 (310)
T 3f1x_A          189 TGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATIL-  267 (310)
T ss_dssp             HSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEE-
T ss_pred             CCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEEC-
Confidence            45556666666666666  55666666666666666666666652 3                 466666666666555 


Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                          .+++||++|+|+.+++|.++  |++++++.|
T Consensus       268 ----~gv~IGd~a~IGagsvV~~d--Vp~~svv~G  296 (310)
T 3f1x_A          268 ----GRVTIGKGATVGGNIWVTEN--VPAGSRIVQ  296 (310)
T ss_dssp             ----SSCEECTTCEECSSCEECSC--BCTTCEECC
T ss_pred             ----CCcEECCCCEECCCCEECCc--cCCCcEEEC
Confidence                34444444444444444433  455666654

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.18  E-value=1.9e-10  Score=95.67  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             ceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEece-------------EEccCcEECCCCEEec-cEEcCCCEECC
Q 018060          254 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRC-------------TVMRGVRIKKHACISS-SIIGWHSTVGQ  317 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~-------------~i~~~~~i~~~~~i~~-~~i~~~~~ig~  317 (361)
                      ++.||+++.|+.+|+|..  .+.||++|.|+++|.|..+             .++..++||++|.|+. ++|..+++||+
T Consensus        75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~  154 (203)
T 1krr_A           75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  154 (203)
T ss_dssp             TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             CeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECC
Confidence            344444444444444432  2455666666666655421             1333445555554443 44455555555


Q ss_pred             CcEEcCceEECCCeEECCceEEcC
Q 018060          318 WARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       318 ~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +|.|+.+++|.++  |++++++.|
T Consensus       155 ~~vIgagsvV~~d--vp~~~vv~G  176 (203)
T 1krr_A          155 NSVIGAGSIVTKD--IPPNVVAAG  176 (203)
T ss_dssp             TCEECTTCEECSC--BCTTEEEET
T ss_pred             CCEECCCCEECCC--cCCCcEEEc
Confidence            5555555555544  355555544

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.18  E-value=3.6e-10  Score=93.28  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             cceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEe-------------ceEEccCcEECCCCEEec-cEEcCCCEEC
Q 018060          253 GNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS-SIIGWHSTVG  316 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-~~i~~~~~ig  316 (361)
                      .++.||+++.|+.+|+|..  ...||++|.|+++|.|.             +..++..++||++|.|+. ++|.++++||
T Consensus        75 ~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG  154 (188)
T 3srt_A           75 YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIG  154 (188)
T ss_dssp             TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEEC
T ss_pred             CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEEC
Confidence            3555666666666665543  33778888888888872             122344566666655553 5556666666


Q ss_pred             CCcEEcCceEECCCeEECCceEEcC
Q 018060          317 QWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       317 ~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++|.|+.+++|.++  |.+++++.|
T Consensus       155 ~~~vIgagsvV~~d--vp~~~v~~G  177 (188)
T 3srt_A          155 DNVVIGAGSVVTKD--IPPNTVAVG  177 (188)
T ss_dssp             SSEEECTTCEECSC--BCSSEEEET
T ss_pred             CCCEECCCCEECcc--cCCCCEEEc
Confidence            66666666666655  355555544

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.17  E-value=6.8e-11  Score=100.27  Aligned_cols=17  Identities=18%  Similarity=0.253  Sum_probs=7.3

Q ss_pred             cceEEcCCCEECCCcEE
Q 018060          253 GNVLVHESAQIGEGCLI  269 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i  269 (361)
                      .++.+++++.||++++|
T Consensus        28 ~~~v~~~~v~IG~~t~i   44 (220)
T 4hur_A           28 KPTITNENILVGEYSYY   44 (220)
T ss_dssp             GGGCCSTTEEECTTCEE
T ss_pred             cceEECCCEEECCCeEE
Confidence            34444444444444443

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.08  E-value=3e-10  Score=95.73  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=29.6

Q ss_pred             ccEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060          306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       306 ~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~  340 (361)
                      +++||++|+||.+|.|.+++.||++++|++++++.
T Consensus       111 ~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~  145 (212)
T 3eev_A          111 DTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT  145 (212)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CeEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            36888888888888888888888888888888885

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.06  E-value=5e-10  Score=104.61  Aligned_cols=68  Identities=22%  Similarity=0.263  Sum_probs=59.2

Q ss_pred             ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060          254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  323 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  323 (361)
                      ++.|++++.| +++.| .+|+||++|+||++|.|.+|+|+++|.||++|+|.+++||+++.||++++|..
T Consensus       324 ~~~ig~~~~I-~~~~i-~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~  391 (420)
T 3brk_X          324 SSVVSGDCII-SGAAL-NRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGE  391 (420)
T ss_dssp             SCEECSSCEE-ESCEE-ESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEESS
T ss_pred             CCEECCCCEE-cCCEE-eCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCCCEECCCCEEeC
Confidence            7777777777 77777 47999999999999999999999999999999999988999988888888875

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.04  E-value=8.1e-10  Score=93.00  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=31.0

Q ss_pred             ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       306 ~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      +++||++++||.++.|.+++.||++++|++++++..
T Consensus       118 ~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  153 (219)
T 4e8l_A          118 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK  153 (219)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            478899999999999988899999999999888854

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.97  E-value=6e-10  Score=93.31  Aligned_cols=81  Identities=14%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             CEECCCcEECCCcEECCCCEECCCcEEe---ceE-----EccCcEECCC----------CEE-eccEEcCCCEECCCcEE
Q 018060          261 AQIGEGCLIGPDVAVGPGCVVESGVRLS---RCT-----VMRGVRIKKH----------ACI-SSSIIGWHSTVGQWARV  321 (361)
Q Consensus       261 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~---~~~-----i~~~~~i~~~----------~~i-~~~~i~~~~~ig~~~~i  321 (361)
                      +.+..++.+++++.||++|.|++++.|.   ..+     .++++.++++          +.+ ++++||+++.||.++.|
T Consensus        49 ~~i~~~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~v~Ig~~v~IG~~a~I  128 (209)
T 1mr7_A           49 QILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVI  128 (209)
T ss_dssp             GEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEE
T ss_pred             eEEeeccccCCCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccccccccCCcEECCCCEEcCCCEE
Confidence            3444445555667777777777777662   111     1122233332          222 34688999999999999


Q ss_pred             cCceEECCCeEECCceEEcC
Q 018060          322 ENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       322 ~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .+++.||++++|++++++..
T Consensus       129 ~~gv~Ig~~~~Igags~V~~  148 (209)
T 1mr7_A          129 MPGVKIGDGAIVAANSVVVK  148 (209)
T ss_dssp             CTTCEECTTCEECTTCEECS
T ss_pred             cCCCEECCCCEEcCCCEEcC
Confidence            88899999999999888854

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.97  E-value=1.9e-09  Score=90.78  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=29.4

Q ss_pred             CcEECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeecc
Q 018060          295 GVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSS  353 (361)
Q Consensus       295 ~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~  353 (361)
                      ++.||++|.|+. ++|.+++.||++|.|+.+++|..+  |++++++.|   .|.+.+.+.
T Consensus       111 ~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~d--Vp~~~vv~G---~PAk~i~~~  165 (212)
T 3eev_A          111 DTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD--VAPYEVVGS---NPAKHIKFR  165 (212)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEET---TTTEEEEES
T ss_pred             CeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEe---cCCEEEecc
Confidence            455555555543 455555566665666555555544  356666655   455555443

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=98.96  E-value=8.8e-10  Score=99.22  Aligned_cols=24  Identities=13%  Similarity=-0.019  Sum_probs=10.8

Q ss_pred             CCCEECCCcEEcCceEECCCeEEC
Q 018060          311 WHSTVGQWARVENMTILGEDVHVC  334 (361)
Q Consensus       311 ~~~~ig~~~~i~~~~~ig~~~~v~  334 (361)
                      .++.||++|.|+.+++|.+++.+.
T Consensus       305 ~GV~IGdgavIGAGsVVt~dv~i~  328 (387)
T 2rij_A          305 TGIPLGDNCIVDAGIAVLEGTKFL  328 (387)
T ss_dssp             ECSCBCTTCEECTTCEECTTCEEE
T ss_pred             CCcEECCCCEECCCCEECCCceee
Confidence            344444444444444444444443

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.84  E-value=1.2e-08  Score=85.43  Aligned_cols=90  Identities=14%  Similarity=0.126  Sum_probs=63.9

Q ss_pred             ecceEEcCCCEECC--------CcEE--------CCCcEECCCCEECCCcEEe--ce--EEcc---------------Cc
Q 018060          252 VGNVLVHESAQIGE--------GCLI--------GPDVAVGPGCVVESGVRLS--RC--TVMR---------------GV  296 (361)
Q Consensus       252 ~~~~~i~~~~~i~~--------~~~i--------~~~~~ig~~~~i~~~~~i~--~~--~i~~---------------~~  296 (361)
                      .+++.||+++.|++        ++++        .+...||++|.|+++|.|.  ..  +..+               .+
T Consensus        20 ~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~   99 (212)
T 1xat_A           20 NPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFA   99 (212)
T ss_dssp             CTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGG
T ss_pred             cCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeeccccccc
Confidence            46667777777764        2333        2467788888888888762  11  2221               13


Q ss_pred             EECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          297 RIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       297 ~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .+++++.+.+ ++||++|+||.+|.|.+++.||++++|++++++..
T Consensus       100 ~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~  145 (212)
T 1xat_A          100 GAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG  145 (212)
T ss_dssp             GCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            4455566654 78999999999999999999999999999999864

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.84  E-value=1.2e-08  Score=85.76  Aligned_cols=42  Identities=17%  Similarity=0.313  Sum_probs=19.9

Q ss_pred             cEEcCceEECCCeEECCceEEc-CcEEccCceeecccCCCccc
Q 018060          319 ARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++|++++.||.++.|.+++.|. ++.|++++.|.+++++++++
T Consensus       119 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~  161 (219)
T 4e8l_A          119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIV  161 (219)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             cEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEE
Confidence            3333333333344444444442 44555556666666666543

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.81  E-value=9.9e-09  Score=85.87  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=23.6

Q ss_pred             cEEcCceEECCCeEECCceEEc-CcEEccCceeecccCCCccc
Q 018060          319 ARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++|++++.||.++.|.+++.|. ++.|++++.|.+++++++++
T Consensus       114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i~  156 (209)
T 1mr7_A          114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLA  156 (209)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeEE
Confidence            4444444444444444444442 45666667777777777654

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.72  E-value=3.3e-08  Score=82.68  Aligned_cols=41  Identities=7%  Similarity=0.154  Sum_probs=18.9

Q ss_pred             cEEcCceEECCCeEECCceEEc-CcEEccCceeecccCCCcc
Q 018060          319 ARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEI  359 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~~~~~~~~  359 (361)
                      ++|+++|.||.++.|.+++.|. ++.|++++.|.++++++++
T Consensus       111 v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~  152 (212)
T 1xat_A          111 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAI  152 (212)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred             eEECCCCEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcE
Confidence            3333334444444444444442 4445555555555555544

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=98.55  E-value=1.1e-06  Score=81.84  Aligned_cols=181  Identities=19%  Similarity=0.223  Sum_probs=112.7

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeC-CcchHHHHHHHHHHc----C-CCEEEEEccc-ChHHHHHHHHHhhhccCcEE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----G-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~-g~pli~~~l~~l~~~----g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i   75 (361)
                      +|+||||.|+||+.   ..||.++|+. |+++++..++++.+.    | .-..+|.++. ..+.++++|+++. .++.++
T Consensus       130 vvlLaGGlGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~-~fg~~V  205 (528)
T 3r3i_A          130 VVKLNGGLGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYN-HCRVKI  205 (528)
T ss_dssp             EEEECCCBCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGT-TSSCCE
T ss_pred             EEEeCCCCccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcC-ccCCCe
Confidence            68899999999987   8899999996 999999999888765    4 2355666776 5678899998743 334444


Q ss_pred             EEecC---------------------------CCCCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHH
Q 018060           76 ICSQE---------------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIE  123 (361)
Q Consensus        76 ~~~~~---------------------------~~~~g~~~al~~~-----~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~  123 (361)
                      .+..|                           ..|.|.++-....     ++.+...+-+++.+...|.+....--.++.
T Consensus       206 ~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~Lg  285 (528)
T 3r3i_A          206 YTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILN  285 (528)
T ss_dssp             EEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHHHH
T ss_pred             EEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHHHH
Confidence            43332                           1234554433332     233333444589999999944332123566


Q ss_pred             HHHHc----CCceEEEEEEccCCC-CceeEEEcCCCCeEeeeeecCCC--------CCCCeEEEEEEEeCHhhHhhc
Q 018060          124 FHKAH----GGEASIMVTKVDEPS-KYGVVVMEESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI  187 (361)
Q Consensus       124 ~~~~~----~~~~~i~~~~~~~~~-~~~~v~~~~~~~~v~~~~ek~~~--------~~~~~~~~Giyi~~~~~l~~l  187 (361)
                      ++..+    +.++.+-+++...+. .-|.+...+..-++.++.|-|..        ..-...++...+|+-+.++.+
T Consensus       286 ~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~~L~~v  362 (528)
T 3r3i_A          286 HLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRL  362 (528)
T ss_dssp             HHSSCSSSCCCSEEEEECCCCTTCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHHHHHHH
T ss_pred             HHHhcccccCCcEEEEEeEccccCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHHHHHHH
Confidence            66655    666666555543332 34444432211355666554431        122346888999998888755

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=98.42  E-value=2.9e-05  Score=71.90  Aligned_cols=178  Identities=18%  Similarity=0.190  Sum_probs=113.1

Q ss_pred             EEEEecCCCcccCCCCCCCCCcccee-CCcchHHHHHHHHHHc----C-CCEEEEEccc-ChHHHHHHHHHhhhccCc--
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAV----G-VTEVVLAINY-QPEVMLNFLKEFEAKLGI--   73 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl-~g~pli~~~l~~l~~~----g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~--   73 (361)
                      +|.||+|.|+||+-   ..||.++|+ .|+++++..++++.+.    + .-..++.++. ..+.++++|+++. .+|.  
T Consensus        79 vvlLaGGlGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~-~Fgl~~  154 (484)
T 3gue_A           79 VLKLNGGLGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYP-TLYEVF  154 (484)
T ss_dssp             EEEEECCCCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCH-HHHTTC
T ss_pred             EEEEcCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCc-ccCCCc
Confidence            68899999999987   789999999 7999999998877663    3 2366777777 5688999998732 1221  


Q ss_pred             -EEEEecC-----------------------CCCCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHH
Q 018060           74 -KIICSQE-----------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEF  124 (361)
Q Consensus        74 -~i~~~~~-----------------------~~~~g~~~al~~~-----~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~  124 (361)
                       ++.+..|                       ..|.|.++-....     ++.+...+-+++.+...|.+....=-.++.+
T Consensus       155 ~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~lG~  234 (484)
T 3gue_A          155 DSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDY  234 (484)
T ss_dssp             CCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHHHHH
T ss_pred             cceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHHHHH
Confidence             1111111                       1245665533332     2333334445899999999444322447788


Q ss_pred             HHHcCCceEEEEEEccCCC-CceeEEEc---------CCCC--eEeeeeecCCC--------CCCCeEEEEEEEeCHhhH
Q 018060          125 HKAHGGEASIMVTKVDEPS-KYGVVVME---------ESTG--KVEKFVEKPKL--------FVGNKINAGIYLLNPAVL  184 (361)
Q Consensus       125 ~~~~~~~~~i~~~~~~~~~-~~~~v~~~---------~~~~--~v~~~~ek~~~--------~~~~~~~~Giyi~~~~~l  184 (361)
                      +.++++++.+-+++...+. .-|.+...         .+ |  ++.++.+-|..        ....+.+++-.+++-..+
T Consensus       235 ~~~~~~d~~~kvv~Kt~~dekgG~l~~~~~~~~~~~~~d-G~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi~~~l~~l  313 (484)
T 3gue_A          235 MHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTR-RRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWINLMEL  313 (484)
T ss_dssp             HHHTTCSEEEEEEECCTTCCSSEEEEEEC--------CC-CEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEEEEEHHHH
T ss_pred             HHhcCCCEEEEEEECCCCCCceeEEEEEccccccccCCC-CCEEEEEeccCCHHHHhhhcCCCCceEeEeeeEEEEHHHH
Confidence            8888888888877765543 34534332         12 4  45555554431        122356888888887766


Q ss_pred             h
Q 018060          185 D  185 (361)
Q Consensus       185 ~  185 (361)
                      .
T Consensus       314 ~  314 (484)
T 3gue_A          314 K  314 (484)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=97.72  E-value=4.8e-05  Score=63.62  Aligned_cols=103  Identities=21%  Similarity=0.301  Sum_probs=71.3

Q ss_pred             CeEEEEe--cCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEE-EEEcccChHHHHHHHHHhhhccCcEEEE
Q 018060            1 MKALILV--GGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEV-VLAINYQPEVMLNFLKEFEAKLGIKIIC   77 (361)
Q Consensus         1 m~avIla--~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i-~vv~~~~~~~~~~~l~~~~~~~~~~i~~   77 (361)
                      |.+||++  +..-|||.+   ...+......++||++++++.+.+++++.+ +++++...  ..    ++   +++++..
T Consensus         4 ~~~vip~k~g~~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~--~~----~~---~~~~~v~   71 (211)
T 2i5e_A            4 MRAVIPYKKAGAKSRLSP---VLSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG--LE----EM---TEARVLL   71 (211)
T ss_dssp             CEEEEECCCTTTTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT--CS----SC---CSSEEEE
T ss_pred             eEEEEEeCCCCCccccCc---cCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH--HH----hh---cCCEEEE
Confidence            6889999  555677755   223333335679999999999999988999 88887642  11    11   2555533


Q ss_pred             ecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHH
Q 018060           78 SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIE  123 (361)
Q Consensus        78 ~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~  123 (361)
                        +.  .|...++..+...+  .  +.++++.||+  +....++++++
T Consensus        72 --~~--~gl~~sl~~a~~~~--~--~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           72 --DE--KDLNEALNRYLKEA--E--EPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             --CC--SCHHHHHHHHHHHC--C--SCEEEECSCCTTCCHHHHHHHTT
T ss_pred             --CC--CCHHHHHHHHHHhc--C--CCEEEEcCCcCCCCHHHHHHHHc
Confidence              33  68889998888776  2  3899999999  44445676665

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=97.69  E-value=0.0003  Score=66.92  Aligned_cols=143  Identities=14%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc-C-CCEEEEEccc-ChHHHHHHHHHhhhccCcEEE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV-G-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKII   76 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~-g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~   76 (361)
                      +|+||+|.|+||+.   ..||.++|++   |++++++.++++.+. | .-..+|.++. .++.++++|++|+-. ..++.
T Consensus       117 vvllaGGlGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl~-~~~V~  192 (630)
T 3ogz_A          117 FVLVAGGLGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLE-VPNLH  192 (630)
T ss_dssp             EEEECCCEEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTCC-CTTEE
T ss_pred             EEEecCCcccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCCC-cccEE
Confidence            68899999999987   7899999997   999999999988764 3 2356777776 578899999985421 11222


Q ss_pred             EecC----------------------CCCCCCchHHHH-----------------------HHhhccCCCCCcEEEEeCC
Q 018060           77 CSQE----------------------TEPLGTAGPLAL-----------------------ARDKLIDDTGEPFFVLNSD  111 (361)
Q Consensus        77 ~~~~----------------------~~~~g~~~al~~-----------------------~~~~~~~~~~~~~lv~~~D  111 (361)
                      +..|                      ..|.|.++-...                       .++.+...+-+++.+...|
T Consensus       193 ~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vD  272 (630)
T 3ogz_A          193 VLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDT  272 (630)
T ss_dssp             EEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTT
T ss_pred             EEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccC
Confidence            2211                      113455543322                       2233333344488999999


Q ss_pred             eeeccC-HHHHHHHHHHcCCceEEEEEEccCCCCceeEE
Q 018060          112 VISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV  149 (361)
Q Consensus       112 ~~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~  149 (361)
                      .+.... --.++..+.+++.++.+-+.+......-|.+.
T Consensus       273 N~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p~E~vG~l~  311 (630)
T 3ogz_A          273 NAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLC  311 (630)
T ss_dssp             BTTHHHHHHHHHHHHHHTTCSEEEEEECCCSSCSSCEEE
T ss_pred             CccccccCHHHhHHHHhcCCCEEEEEEECCCCcceeeEE
Confidence            944322 23367888888888887777653333344443

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=96.60  E-value=0.015  Score=49.33  Aligned_cols=88  Identities=10%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             cchHHHHHHHHHHcCCCEEEEEcccChHHH---HHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060           31 KPMILHQIEALKAVGVTEVVLAINYQPEVM---LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV  107 (361)
Q Consensus        31 ~pli~~~l~~l~~~gi~~i~vv~~~~~~~~---~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv  107 (361)
                      ++|++++++.+.+.+...++++++......   ...+.     .++  .+..+. ..|.+.++..+...+...+.+.+++
T Consensus        37 ~~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~~-----~~~--~~~~q~-~~gLg~rl~~a~~~~~~~~~~~vli  108 (242)
T 3cgx_A           37 RHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLG-----PQH--MFAAQQ-GLDLGERMKHAMQKAFDDGYDRVVL  108 (242)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHHC-----TTS--EEEECC-SSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhcc-----CCc--EEecCC-CCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            689999999999888777777766544332   22221     122  334443 4588999999887652233348999


Q ss_pred             EeCCe--eeccCHHHHHHHHH
Q 018060          108 LNSDV--ISEYPFAEMIEFHK  126 (361)
Q Consensus       108 ~~~D~--~~~~~l~~~~~~~~  126 (361)
                      +.+|+  +...++.++++.+.
T Consensus       109 igaD~P~L~~~~l~~a~~~l~  129 (242)
T 3cgx_A          109 MGSDIPDYPCELVQKALNDLQ  129 (242)
T ss_dssp             ECSSCTTCCHHHHHHHHHHTT
T ss_pred             EcCCCCCCCHHHHHHHHHHhc
Confidence            99999  66667888887654

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=93.27  E-value=1.2  Score=37.27  Aligned_cols=94  Identities=16%  Similarity=0.152  Sum_probs=64.3

Q ss_pred             cchHHHHHHHHHHcCCC--EEEEEcccChHHHHHHHHHhhhccCcEEEEecCC--------CCCCCchHHHHHHhhccCC
Q 018060           31 KPMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET--------EPLGTAGPLALARDKLIDD  100 (361)
Q Consensus        31 ~pli~~~l~~l~~~gi~--~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~--------~~~g~~~al~~~~~~~~~~  100 (361)
                      ...|..+|+.+.+....  +++|+-+...+...+.++++....++.+  ....        ...|.+.+.-.+.+..  .
T Consensus        13 ~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~--i~~~~~~~~~~~~n~G~~~a~N~gi~~a--~   88 (255)
T 1qg8_A           13 SDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRF--YQSDISGVKERTEKTRYAALINQAIEMA--E   88 (255)
T ss_dssp             TTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEE--EECCCCSHHHHHSSCHHHHHHHHHHHHC--C
T ss_pred             HHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEE--EecccccccccccccCHHHHHHHHHHHc--C
Confidence            35889999999876533  5666666566777788877644334444  3333        3456667776777666  3


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (361)
Q Consensus       101 ~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~  129 (361)
                      + +.++++.+|.+...+ ++.+++.+.+++
T Consensus        89 g-~~i~~lD~Dd~~~~~~l~~~~~~~~~~~  117 (255)
T 1qg8_A           89 G-EYITYATDDNIYMPDRLLKMVRELDTHP  117 (255)
T ss_dssp             C-SEEEEEETTEEECTTHHHHHHHHHHHCT
T ss_pred             C-CEEEEeCCCCccChHHHHHHHHHHHhCC
Confidence            3 489999999977766 788888887753

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=91.30  E-value=1.2  Score=36.87  Aligned_cols=102  Identities=19%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             ceeCCc-chHHHHHHHHHHcCCC--EEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCchHHHHHHhhccCCC
Q 018060           26 VEFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLIDDT  101 (361)
Q Consensus        26 lpl~g~-pli~~~l~~l~~~gi~--~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~~al~~~~~~~~~~~  101 (361)
                      +|.-|. ..|..+|+.+.+....  +|+|+-+...+...+.++++.... ++.+.  .. +..|.+.+.-.+.+..  .+
T Consensus        11 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i--~~-~n~G~~~a~N~g~~~a--~g   85 (240)
T 3bcv_A           11 VPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVI--HK-KNAGLGMACNSGLDVA--TG   85 (240)
T ss_dssp             EEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEE--EC-CCCCHHHHHHHHHHHC--CS
T ss_pred             EecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEE--EC-CCCChHHHHHHHHHHc--CC
Confidence            344343 5899999999876432  566665544444555555543322 34443  32 3457777777777776  33


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHHHHcCCceE
Q 018060          102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS  133 (361)
Q Consensus       102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~  133 (361)
                       +.++++.+|.+...+ ++.+++.+.+.+.++.
T Consensus        86 -~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v  117 (240)
T 3bcv_A           86 -EYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAV  117 (240)
T ss_dssp             -SEEEECCTTCCCCTTHHHHHHHHHHHHTCSEE
T ss_pred             -CEEEEECCCCcCCHHHHHHHHHHHHhcCCCEE
Confidence             489999999977766 7888888877555544

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=91.23  E-value=1.5  Score=40.82  Aligned_cols=103  Identities=12%  Similarity=0.122  Sum_probs=67.7

Q ss_pred             ceeCCc--chHHHHHHHHHHcCC----CEEEEEcccChH-HHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060           26 VEFANK--PMILHQIEALKAVGV----TEVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (361)
Q Consensus        26 lpl~g~--pli~~~l~~l~~~gi----~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~   98 (361)
                      +|.-|.  ..|..+|+++.+...    .+|+||-+...+ ...+.++++.......+.++...+..|.+.+...+.+.. 
T Consensus        35 Ip~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A-  113 (472)
T 1xhb_A           35 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVS-  113 (472)
T ss_dssp             EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHC-
T ss_pred             EEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhc-
Confidence            444465  489999999988642    267776655433 355555554333332344455555567788888887776 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCCc
Q 018060           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGE  131 (361)
Q Consensus        99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~  131 (361)
                       .+ |.++++.+|.....+ ++.+++.+.+....
T Consensus       114 -~g-d~i~flD~D~~~~p~~L~~ll~~~~~~~~~  145 (472)
T 1xhb_A          114 -RG-QVITFLDAHCECTAGWLEPLLARIKHDRRT  145 (472)
T ss_dssp             -CS-SEEEEEESSEEECTTCHHHHHHHHHHCTTE
T ss_pred             -cC-CeEEEECCCeEeCccHHHHHHHHHHhCCCE
Confidence             33 489999999976665 89999988776543

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=86.54  E-value=4.4  Score=38.74  Aligned_cols=101  Identities=12%  Similarity=0.161  Sum_probs=64.4

Q ss_pred             ceeCCc--chHHHHHHHHHHcCC-C---EEEEEcccChHHH-HHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060           26 VEFANK--PMILHQIEALKAVGV-T---EVVLAINYQPEVM-LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (361)
Q Consensus        26 lpl~g~--pli~~~l~~l~~~gi-~---~i~vv~~~~~~~~-~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~   98 (361)
                      +|.-|.  ..|..+|+++.+... .   +|+||-+...+.. .+.++++..... .+.++......|.+.+...+.... 
T Consensus       118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A-  195 (570)
T 2d7i_A          118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVA-  195 (570)
T ss_dssp             EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST-TEEEEECSSCCCHHHHHHHHHHHC-
T ss_pred             EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC-eEEEEECCCCCCHHHHHHHHHHhc-
Confidence            444466  488999998876542 2   6777665533333 455554432221 233344444568888888888776 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCC
Q 018060           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG  130 (361)
Q Consensus        99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~  130 (361)
                       .+ |.++++.+|.....+ |+.+++.+.+...
T Consensus       196 -~g-d~i~fLD~D~~~~p~~L~~ll~~l~~~~~  226 (570)
T 2d7i_A          196 -TG-DVITFLDSHCEANVNWLPPLLDRIARNRK  226 (570)
T ss_dssp             -CS-SEEEECCSSEEECTTCSHHHHHHHHHCTT
T ss_pred             -CC-CEEEEEcCCccccccHHHHHHHHHHhCCC
Confidence             33 488999999976665 8999998877553

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=84.99  E-value=6.4  Score=37.93  Aligned_cols=104  Identities=16%  Similarity=0.164  Sum_probs=68.1

Q ss_pred             cceeCCcc-hHHHHHHHHHHcC---CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCC
Q 018060           25 LVEFANKP-MILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD  100 (361)
Q Consensus        25 llpl~g~p-li~~~l~~l~~~g---i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~  100 (361)
                      .+|.-|.+ .|..+|+.+.+..   ..+|+|+-+...+...+.++++....++.+.... ....|.+.+.-.+....  .
T Consensus        98 iIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~-~~~~g~~~a~N~g~~~a--~  174 (625)
T 2z86_A           98 VIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQK-DYGYQLCAVRNLGLRAA--K  174 (625)
T ss_dssp             EEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEEC-CCSCCHHHHHHHHHHHC--C
T ss_pred             EEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeC-CCCcchhHHHHHHHHhC--C
Confidence            35555654 8999999998763   3467777666556677777776544445554332 22234566666677666  3


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHHcCCce
Q 018060          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEA  132 (361)
Q Consensus       101 ~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~  132 (361)
                      + +.++++.+|.....+ +..+++.+.+.+..+
T Consensus       175 g-~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~  206 (625)
T 2z86_A          175 Y-NYVAILDCDMAPNPLWVQSYMELLAVDDNVA  206 (625)
T ss_dssp             S-SEEEEECTTEEECTTHHHHHHHHHHHCTTEE
T ss_pred             c-CEEEEECCCCCCCHHHHHHHHHHHhcCCceE
Confidence            3 489999999977766 788888887765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	5e-59
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	1e-57
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	3e-49
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	2e-41
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	9e-38
d1jyka_	229	c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer	1e-22
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	3e-22
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	3e-17
d2cu2a2	268	c.68.1.20 (A:1-268) Putative mannose-1-phosphate g	3e-13
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	1e-10
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-04
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	9e-10
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	2e-08
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	1e-07
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	9e-05
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	1e-07
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	1e-07
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	1e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	4e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	0.002
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	5e-07
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	7e-07
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	3e-06
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	3e-05
d1vh1a_	246	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	1e-04
d1vica_	255	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	2e-04
d1e5ka_	188	c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro	6e-04
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	0.001
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	0.002
d2icya2	378	c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2	0.002
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	0.003
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	0.003
d1h7ea_	245	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	0.004

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score =  190 bits (485), Expect = 5e-59
 Identities = 59/253 (23%), Positives = 107/253 (42%), Gaps = 11/253 (4%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ E+++    + +  
Sbjct: 2   MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    ++ GI++  +++  P G A    +    L  +      VL  ++     F+ 
Sbjct: 62  FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGE--PSCLVLGDNIFFGQGFSP 119

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
            +    A    A++   +V +P ++GVV  ++   +     EKPK    N    G+Y  +
Sbjct: 120 KLRHVAARTEGATVFGYQVMDPERFGVVEFDD-NFRAISLEEKPKQPKSNWAVTGLYFYD 178

Query: 181 PAVLDRIELRPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRLY 233
             V++  +    S   E     +       G L   +L     W+D G     I     +
Sbjct: 179 SKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST-F 237

Query: 234 LDSLRKKSSLKLA 246
           + ++ K+   K+A
Sbjct: 238 VQTVEKRQGFKIA 250

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  187 bits (476), Expect = 1e-57
 Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 10/234 (4%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E+++    Q    
Sbjct: 2   RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    +  G+ +  + +  P G A    +              VL  ++   + F E
Sbjct: 62  FQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGES--FIGNDLSALVLGDNLYYGHDFHE 119

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           ++         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  +
Sbjct: 120 LLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYD 178

Query: 181 PAVLDRIELRPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYI 227
             V+D       S   E     V       G+L   ++     W+D G     +
Sbjct: 179 QQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLL 232

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  165 bits (419), Expect = 3e-49
 Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 11/253 (4%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK ++L GG GTRL P+T +V K L+   +KPMI + +  L   G+ ++++    +   +
Sbjct: 4   MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    ++ G++     + EP G A    + +D + D   +   VL  +V   + F+E
Sbjct: 64  YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDS--KVALVLGDNVFYGHRFSE 121

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
           ++    +    A I    V +P  +GVV  +   G+V    EKP     N +  G+Y  +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVISIEEKPSRPKSNYVVPGLYFYD 180

Query: 181 PAVLDRIELRPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRLY 233
             V++       S   E     V  +    GKL   ++     W+D G     +     +
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS-F 239

Query: 234 LDSLRKKSSLKLA 246
           +++++K+    +A
Sbjct: 240 IETIQKRQGFYIA 252

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score =  144 bits (362), Expect = 2e-41
 Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 32/260 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            KA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+
Sbjct: 3   SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62

Query: 61  LNFLKEF--------------------EAKLGIKIICSQETEPLGTAGPLALARDKLIDD 100
             +   +                    +      +      +   T G L    + + DD
Sbjct: 63  KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122

Query: 101 TGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160
             E F     D +++      I+FHKAHG +A++  T    P ++G + ++    +  + 
Sbjct: 123 --EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGALDIQAGQVRSFQE 178

Query: 161 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDI 220
             K    +   IN G ++LNP+V+D I+   T+ E+E    +A +G+L A   PGFW  +
Sbjct: 179 KPKGDGAM---INGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPM 235

Query: 221 GQPRDYITGLRLYLDSLRKK 240
              RD +     YL+ L +K
Sbjct: 236 DTLRDKV-----YLEGLWEK 250

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  135 bits (340), Expect = 9e-38
 Identities = 49/269 (18%), Positives = 95/269 (35%), Gaps = 43/269 (15%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAINYQPEV 59
           +  +IL GG GTRL PLT    KP V    N  +I   +       ++++ +   +    
Sbjct: 12  VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 71

Query: 60  MLNFLKEFEAKLG-------------IKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106
           +   L    A                 +          GTA  +        + T   + 
Sbjct: 72  LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYL 131

Query: 107 VLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVMEESTGKVEKFVEKP 164
           +L  D +    + + I+ H+    + ++    +DE   + +G++ ++E  G++ +F EKP
Sbjct: 132 ILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKP 190

Query: 165 KLFVGNK---------------------INAGIYLLNPAVLDRIE----LRPTSIEKEVF 199
           +                            + GIY+++  V+  +             EV 
Sbjct: 191 QGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 250

Query: 200 PKIALEG-KLFAMVLPGFWMDIGQPRDYI 227
           P     G ++ A +  G+W DIG    + 
Sbjct: 251 PGATSLGMRVQAYLYDGYWEDIGTIEAFY 279

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 93.2 bits (230), Expect = 1e-22
 Identities = 50/237 (21%), Positives = 101/237 (42%), Gaps = 30/237 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+IL  G GTRLRPLT + PK LV+   KP+I +QIE LK  G+ ++++ + Y  E  
Sbjct: 4   VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 63

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                  + K G++++ + +         L L +++L +     + +   + + +  F  
Sbjct: 64  ----DYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELAN----SYVIDADNYLFKNMFRN 115

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
            +             V + D  +++ +V  ++   KV+  +   K     +I +G+   +
Sbjct: 116 DLTRSTYF------SVYREDCTNEWFLVYGDD--YKVQDIIVDSK---AGRILSGVSFWD 164

Query: 181 PAVLDRI--ELRPTSIEKE--------VFPKIALEGKLFAMVLPG-FWMDIGQPRDY 226
               ++I   +    +  E        +      E  ++   L G    +I   +DY
Sbjct: 165 APTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDY 221

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 92.1 bits (227), Expect = 3e-22
 Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 24/252 (9%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++      PK L + A   M+ H   ++ A+   + V  + ++ E++  
Sbjct: 4   AIILAAGKGTRMKSDL---PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN-SDVISEYPFAEM 121
            L               ++E LGT   + +    L   +G    +   + +I+      +
Sbjct: 61  VLAGQ-------TEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 113

Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKIN---AGIYL 178
           I+FH  H   A+I+  + D P  YG +V  ++   +    +K       +I     G Y+
Sbjct: 114 IDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYV 173

Query: 179 LNPAV----LDRIELRP--TSIEKEVFPKIALE--GKLFAMVLPGFWMDIG--QPRDYIT 228
            +       L  I                I  E   K+ A  L  F   +G        T
Sbjct: 174 FDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALAT 233

Query: 229 GLRLYLDSLRKK 240
              +    +  K
Sbjct: 234 AESVMRRRINHK 245

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 78.2 bits (191), Expect = 3e-17
 Identities = 42/177 (23%), Positives = 63/177 (35%), Gaps = 13/177 (7%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A K M+ H I+A   +G   V L   +  +++
Sbjct: 3   MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                         +    + E LGT   +  A     DD      +L  DV        
Sbjct: 60  KQA------LKDDNLNWVLQAEQLGTGHAMQQAAPFFADDE--DILMLYGDVPLISVETL 111

Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 177
                    G   ++  K+D+P+ YG +  E   GKV   VE        +    I 
Sbjct: 112 QRLRDAKPQGGIGLLTVKLDDPTGYGRITRE--NGKVTGIVEHKDATDEQRQIQEIN 166

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

 Score = 66.6 bits (161), Expect = 3e-13
 Identities = 50/263 (19%), Positives = 84/263 (31%), Gaps = 48/263 (18%)

Query: 1   MK--ALILVGGFGTRLRPL-TLSVPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAINYQ 56
           MK  AL++ GG G RL PL     PKP +     K ++   +E L  +   E  L    +
Sbjct: 1   MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60

Query: 57  PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY 116
            +                I    E     TAG + L   + + +  E   VL +D     
Sbjct: 61  DQEA------VARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGD 114

Query: 117 PFAEMIEFHKAH-----GGEASIMVTKVDEPSKYGVVVMEESTG---KVEKFVEKPKLFV 168
             A              G   ++ +      ++YG + +    G   + E FVEKP    
Sbjct: 115 DEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAE 174

Query: 169 GNKINAGIYLLNPAVLDR--------------------IELRPTSIEKEVFPKIA----- 203
             +     Y+ N  V                         L   +  +EV+  +      
Sbjct: 175 ALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISID 234

Query: 204 ---LE--GKLFAMVLPGFWMDIG 221
              +E   ++  ++    W D+G
Sbjct: 235 YGVMEKAERVRVVLGRFPWDDVG 257

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 9/66 (13%), Positives = 24/66 (36%)

Query: 251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 310
           + G +      +I    +I  +V +G    + +G  +    +     I  +  +  + + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 311 WHSTVG 316
              T+G
Sbjct: 71  AACTIG 76

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 269 IGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILG 328
            G DV +    ++E  V     T+   V+I     I +S+IG    +  +  VE+   L 
Sbjct: 17  HGRDVEIDTNVIIEGNV-----TLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED-ANLA 70

Query: 329 EDVHV 333
               +
Sbjct: 71  AACTI 75

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 56.0 bits (134), Expect = 9e-10
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 1  MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
          M+  A++L GG         +   K LV +  +PM+   +EAL A G++ V +  N    
Sbjct: 1  MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59

Query: 59 VM 60
            
Sbjct: 60 PA 61

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 9/165 (5%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           ALI   G G R        PK  VE  +K ++ H +   +     ++ + +    +   +
Sbjct: 6   ALIPAAGIGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFAD 62

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
            ++    ++ +     Q        G   L    L  +      +L  D       +E +
Sbjct: 63  KVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAE---TDNILVHDAARCCLPSEAL 119

Query: 123 EFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLF 167
                  G A+         +          +G++   V++  L+
Sbjct: 120 ARLIEQAGNAAEGGILAVPVADTLKRA---ESGQISATVDRSGLW 161

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSII 309
           I  +  VH +A + EG  IG +  +GP C+V   V +     +   V +  H  I     
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 310 GWHSTV-------GQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 351
            +            ++A       +G+   + + +  + G V      K
Sbjct: 62  IYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTK 110

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 41.0 bits (95), Expect = 9e-05
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI-SSSIIGWHST 314
           ++ +SA +    ++    ++G    +        C V   V I +   + S  ++  H+ 
Sbjct: 1   MIDKSAFVHPTAIVEEGASIGANAHIGPF-----CIVGPHVEIGEGTVLKSHVVVNGHTK 55

Query: 315 VGQWARVENMTILGEDVHVCDEIYSNGGV 343
           +G+   +     +GE             V
Sbjct: 56  IGRDNEIYQFASIGEVNQDLKYAGEPTRV 84

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK-KHACISS 306
           + I    ++   A+I +G  IG    +G G  ++ GV+L +  T+     +         
Sbjct: 1   SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 60

Query: 307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 342
           +++G      ++    +  I+GED  + +    N G
Sbjct: 61  AVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPG 96

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 313
           N +     +I     I     +     +   V + R  +  G RI  +  I SS +    
Sbjct: 63  NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC 122

Query: 314 TVGQWARVE-NMTILGEDV 331
            +   ARV     IL    
Sbjct: 123 AIYGDARVLNQSEILAIQG 141

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 253 GNVLV-HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW 311
           G+  +  E+A    G  I  +  +   C + + VR+     +    I   A IS ++   
Sbjct: 55  GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQ 114

Query: 312 HSTVGQWARVENMTILGEDVHV 333
            S+V +   +     +     +
Sbjct: 115 SSSVREECAIYGDARVLNQSEI 136

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 10/73 (13%), Positives = 25/73 (34%)

Query: 249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI 308
           A       +  +A+I + C +  +V +G    ++         +   V I+  +      
Sbjct: 64  AMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECA 123

Query: 309 IGWHSTVGQWARV 321
           I   + V   + +
Sbjct: 124 IYGDARVLNQSEI 136

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 21/118 (17%)

Query: 248 GANIVGNVLVHESAQIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHA 302
           G  I GN  + +   +     IG         +  G  +   V +   +V     I   A
Sbjct: 69  GTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDA 128

Query: 303 CI--SSSIIG--------------WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 344
            +   S I+               +       +R+ +   L  +  +      +   V
Sbjct: 129 RVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEV 186

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 1  MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA 43
          +   A++   GFG R++      PK  +   N+ ++ H + AL A
Sbjct: 2  LDVCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLA 43

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.3 bits (111), Expect = 7e-07
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 1  MK-ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA 43
          M  A++L  G G R+     +VPK  +E   + +  + +     
Sbjct: 3  MNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLK 43

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA 43
           ++L GG G R++    S+PK  +    +P+ L+       
Sbjct: 7  VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSR 44

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALK 42
           ++L  G  TR       V K  +   N P+ L+  + L 
Sbjct: 4  LIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLS 40

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          KPLV+   KPMI+H +E  +  G   +++A +++    
Sbjct: 18 KPLVDINGKPMIVHVLERARESGAERIIVATDHEDVAR 55

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          KPL +   KPMI H  E     G + V++A + +    
Sbjct: 18 KPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVAD 55

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIE 39
           ++L GG   R+      V K L+E   KP+  H  +
Sbjct: 6  GVVLAGGKARRMG----GVDKGLLELNGKPLWQHVAD 38

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/88 (17%), Positives = 34/88 (38%)

Query: 251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 310
           + G +      +I    +I  +V +G    + +G  +    +     I  +  +  + + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 311 WHSTVGQWARVENMTILGEDVHVCDEIY 338
              T+G +AR+     L E  HV + + 
Sbjct: 71  AACTIGPFARLRPGAELLEGAHVGNFVE 98

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 9/102 (8%), Positives = 26/102 (25%), Gaps = 1/102 (0%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWH 312
              +  +   G    I  +V +     +   V++ + C +   V          +++   
Sbjct: 8   RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDA 67

Query: 313 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 354
           +            +      +      N   +   +  K S 
Sbjct: 68  NLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSK 109

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 39/213 (18%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKP----MILHQIEAL-KAVGV----------- 46
            L L GG GT    +  + PK ++E  +      +I+ QIE L    G            
Sbjct: 77  VLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFN 133

Query: 47  ----TEVVLAINYQPEVMLNFLKEF-------EAKLGIKIICSQETE---PLGTAGPLAL 92
               T  ++       V ++   +        +  +        + E   P G       
Sbjct: 134 THDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPA 193

Query: 93  AR-----DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGE-ASIMVTKVDEPSKYG 146
                  D  +    E  FV NSD +       +++    +  E    +  K     K G
Sbjct: 194 LMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGG 253

Query: 147 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 179
            ++  E   ++ +  + P   V    +   + +
Sbjct: 254 TLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKI 286

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG--------------VRIK 299
           +  V E+A +    ++    +V P  V+   +                          I 
Sbjct: 16  SAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIG 75

Query: 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKS 352
           ++  I  + +   + VG +  +   +++ +   + D +    G VV P+KEI  
Sbjct: 76  EYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPD 129

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH 312
              +    +I     I  +V +     + +   L+  T +    I   A I++S+I   
Sbjct: 8   ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEES 66

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 23 KPLVEFANKPMILHQIE-ALKAVGVTEVVLAINYQPEVMLNFLKEFEAKL 71
          KPL++   KPMI H  E AL+  GV EV +A +             +A +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIM 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	100.0
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	100.0
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	100.0
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	100.0
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.97
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.96
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.96
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.93
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.91
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.67
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.65
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.64
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.62
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.62
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.61
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.61
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.58
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.58
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.57
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.55
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.55
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.54
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.54
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.54
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.49
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.49
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.48
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.48
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.47
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.45
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.45
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.44
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.4
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.4
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.4
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.37
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.34
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.33
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.32
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.31
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.31
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.29
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.27
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	99.26
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	99.23
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.16
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.14
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.07
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.07
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.02
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	99.02
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.87
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.86
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.78
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.71
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.6
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	98.28
d2i5ea1	208	Hypothetical protein MM2497 {Methanosarcina mazei	96.31
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	91.32
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	91.18
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	90.61

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.5e-40  Score=291.04  Aligned_cols=230  Identities=24%  Similarity=0.372  Sum_probs=202.8

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |+|||||||.|+||+|+|...||||+|++|+|||+|+|+.|..+|++++++++++ +.+.+++++.. ...+++++.+..
T Consensus         2 ~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~-~~~~g~~I~y~~   80 (292)
T d1fxoa_           2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQYAV   80 (292)
T ss_dssp             EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             cEEEEECCCCCCcCChhhcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhcc-ccccCeEEEEcc
Confidence            6899999999999999999999999999999999999999999999999888775 56777777765 456789999999


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      |..+.|+++|+..+.+++.  +++.++++.+|.++..++.++++.|.++++.+++++.++++|++||++..|++ +++..
T Consensus        81 q~~~~Gta~ai~~a~~~i~--~~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~p~~yGV~~~d~~-~ki~~  157 (292)
T d1fxoa_          81 QPSPDGLAQAFLIGESFIG--NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAIS  157 (292)
T ss_dssp             CSSCCCGGGHHHHTHHHHT--TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTT-SCEEE
T ss_pred             CCCCCcHHHHHHhhhhhcC--CCceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCCHHHCeEEEEcCC-CCEeE
Confidence            9999999999999999994  34367788888899999999999999999989999999999999999999987 99999


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhcc-----CCCCccccchHHhHHhcCceEEEEec--ceEEEcCCHHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIE-----LRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRL  232 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~-----~~~~~~~~d~l~~l~~~~~i~~~~~~--~~~~~i~t~~dy~~a~~~  232 (361)
                      +.|||..+.++++.+|+|+|++++++.+.     .+......|+++.+++++++....+.  .+|+|++|+++|++++..
T Consensus       158 ~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~  237 (292)
T d1fxoa_         158 LEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQF  237 (292)
T ss_dssp             EEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHH
T ss_pred             EEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHH
Confidence            99999999999999999999999988764     22333446889999999988777764  369999999999999976


Q ss_pred             HH
Q 018060          233 YL  234 (361)
Q Consensus       233 ~l  234 (361)
                      ..
T Consensus       238 v~  239 (292)
T d1fxoa_         238 IA  239 (292)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.6e-40  Score=286.71  Aligned_cols=229  Identities=24%  Similarity=0.401  Sum_probs=198.7

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChH-HHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+|+.|..+|+++++++++++.. .+++++.+ +.++|+++.+..
T Consensus         2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~-g~~~gi~I~y~~   80 (291)
T d1mc3a_           2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAE   80 (291)
T ss_dssp             CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             ccEEEECCcCccccchhhcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCc-hHhhCcEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999998654 45556554 567799999999


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      |..+.|+++|+..+.+++.  +++.++++.+|.++..++..+++.|.++...++++++++++|++||++..|++ ++|..
T Consensus        81 Q~~plGta~Ai~~a~~fi~--~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~-g~i~~  157 (291)
T d1mc3a_          81 QPSPDGLAQAFIIGETFLN--GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAIS  157 (291)
T ss_dssp             CSSCCCSTHHHHHTHHHHT--TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EEEEE
T ss_pred             CCCCCchHHHHHHHHHHhC--CCCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCCcccCCCceeccC-cceeE
Confidence            9999999999999999994  33245666666788889999999999888889999999999999999999986 89999


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccC-----CCCccccchHHhHHhcCceEEEEec-c-eEEEcCCHHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIEL-----RPTSIEKEVFPKIALEGKLFAMVLP-G-FWMDIGQPRDYITGLRL  232 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~-----~~~~~~~d~l~~l~~~~~i~~~~~~-~-~~~~i~t~~dy~~a~~~  232 (361)
                      +.|||..+.++++.+|+|+|++++++.+..     +...-..|+++.+++++.+..+.+. + .|.|++|+++|++++..
T Consensus       158 i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~  237 (291)
T d1mc3a_         158 LEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTF  237 (291)
T ss_dssp             CCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHH
T ss_pred             EEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHH
Confidence            999999999999999999999999987752     2222224788888888887766653 3 69999999999999976


Q ss_pred             H
Q 018060          233 Y  233 (361)
Q Consensus       233 ~  233 (361)
                      .
T Consensus       238 v  238 (291)
T d1mc3a_         238 V  238 (291)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=6.4e-35  Score=258.54  Aligned_cols=230  Identities=24%  Similarity=0.378  Sum_probs=195.1

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~   79 (361)
                      |+|||||||.|+||+|+|...||||+|++|+|||+|+++++..+|+++++|++++.. +.+++++.+ ...+++++.++.
T Consensus         4 MkavIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~-~~~~~~~i~~v~   82 (295)
T d1lvwa_           4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-GSQFGVRFSYRV   82 (295)
T ss_dssp             CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTSEEEEEE
T ss_pred             cEEEEECCCCcccCCcccCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhcc-chhcCCEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999865 555666654 345578888888


Q ss_pred             CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ++.+.|+++|++.+...+.  +++.++++++|++...++..++..+.+....+++.+.+..+++.||++..+++ ++|.+
T Consensus        83 e~~~~gta~Al~~a~~~l~--~~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~yG~i~~~~~-~~v~~  159 (295)
T d1lvwa_          83 QEEPRGIADAFIVGKDFIG--DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVIS  159 (295)
T ss_dssp             CSSCCCGGGHHHHTHHHHT--TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTT-SBEEE
T ss_pred             CCCCCCHHHHHHHHHHHcC--CCCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcCCCccccEEEECCC-CcEEE
Confidence            9999999999999999994  33367888888898889999999999988889999999999999999999886 89999


Q ss_pred             eeecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcCceEE--EEecceEEEcCCHHHHHHHHHH
Q 018060          160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFA--MVLPGFWMDIGQPRDYITGLRL  232 (361)
Q Consensus       160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~i~~--~~~~~~~~~i~t~~dy~~a~~~  232 (361)
                      |.|||....++++++|+|+|+++++..+..-     ......++++.++..+....  +.....|.|++++++|.+++..
T Consensus       160 ~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~  239 (295)
T d1lvwa_         160 IEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSF  239 (295)
T ss_dssp             EEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHH
T ss_pred             EeecccCcccceeecceEEECHHHHHHHHhcCCCcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHH
Confidence            9999998888999999999999998766321     22223467777777776444  4455799999999999999876


Q ss_pred             HH
Q 018060          233 YL  234 (361)
Q Consensus       233 ~l  234 (361)
                      +.
T Consensus       240 i~  241 (295)
T d1lvwa_         240 IE  241 (295)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=7.4e-34  Score=253.88  Aligned_cols=235  Identities=20%  Similarity=0.347  Sum_probs=185.5

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh------hccC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE------AKLG   72 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~------~~~~   72 (361)
                      +.|||||||+|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|++++..+.+.+|+.+ +.      +..+
T Consensus        12 ~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~~~   91 (307)
T d1yp2a2          12 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG   91 (307)
T ss_dssp             EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC
T ss_pred             eEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccccc
Confidence            3699999999999999999999999999875 99999999999999999999999998889888865 11      1223


Q ss_pred             cEEEEecCCC------CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCC
Q 018060           73 IKIICSQETE------PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSK  144 (361)
Q Consensus        73 ~~i~~~~~~~------~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~  144 (361)
                      ....+..+..      ..|++++++.+...+.+...++|++++||+++..++..+++.|+.+++.++++....  +....
T Consensus        92 ~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (307)
T d1yp2a2          92 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATA  171 (307)
T ss_dssp             EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTT
T ss_pred             cceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccccccc
Confidence            3333333222      358899999999888655556899999999999999999999999988877776554  34557


Q ss_pred             ceeEEEcCCCCeEeeeeecCCCC---------------------CCCeEEEEEEEeCHhhHhhccC----CCCccccchH
Q 018060          145 YGVVVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLDRIEL----RPTSIEKEVF  199 (361)
Q Consensus       145 ~~~v~~~~~~~~v~~~~ek~~~~---------------------~~~~~~~Giyi~~~~~l~~l~~----~~~~~~~d~l  199 (361)
                      ||++.++++ ++|..+.|||...                     ...+.++|+|+|+++++..+..    ...++..|++
T Consensus       172 ~gvv~~d~~-~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i  250 (307)
T d1yp2a2         172 FGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI  250 (307)
T ss_dssp             SEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH
T ss_pred             cceEEECCC-CcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHH
Confidence            999999986 9999999998621                     2347899999999998876532    2345667889


Q ss_pred             HhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHHHHHh
Q 018060          200 PKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDS  236 (361)
Q Consensus       200 ~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~  236 (361)
                      +.++.++ ++.++.++|+|.|++||++|+++++.+++.
T Consensus       251 ~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~  288 (307)
T d1yp2a2         251 PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK  288 (307)
T ss_dssp             HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCS
T ss_pred             HHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcC
Confidence            8888775 699999999999999999999999876653

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=5.8e-30  Score=222.47  Aligned_cols=228  Identities=31%  Similarity=0.541  Sum_probs=177.5

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhh-----------
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-----------   69 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~-----------   69 (361)
                      ++|||||||+|+||+|+|...||||+|++|+|||+|+|+.|.++|+++|++++++..+.+++++.+...           
T Consensus         3 ~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~~   82 (259)
T d1tzfa_           3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE   82 (259)
T ss_dssp             CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG
T ss_pred             ceEEEECCCccccCChhhCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchhcc
Confidence            489999999999999999999999999999999999999999999999999999999999999874110           


Q ss_pred             ---------ccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEcc
Q 018060           70 ---------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD  140 (361)
Q Consensus        70 ---------~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~  140 (361)
                               .....+.+..+....++.+++..+.+.+.  .+++++++.+|.+++.++..+++.+.......+....  .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~  158 (259)
T d1tzfa_          83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK--DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT--F  158 (259)
T ss_dssp             TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT--TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE--C
T ss_pred             ccchhhhccccccceeEEeccccccccchhhhhhhhcc--CCCceEEeccccccccchhhhhhhhcccccceeeccc--c
Confidence                     01122334445556778888888887773  3348999999999999999999988887766665543  3


Q ss_pred             CCCCceeEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEc
Q 018060          141 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDI  220 (361)
Q Consensus       141 ~~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i  220 (361)
                      ++..++.+....  ..+..+.+.+. ..+.+..+|+|++++.+++.+.....++..++++.|+++++++++.++|+|.|+
T Consensus       159 ~~~~~~~~~~~~--~~i~~~~~~~~-~~~~~~~~G~y~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~di  235 (259)
T d1tzfa_         159 PPGRFGALDIQA--GQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPM  235 (259)
T ss_dssp             CCCCSEEEEEET--TEEEEEEESCS-CCSCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEEC
T ss_pred             ccccCCceeccc--ceEEeeeeccc-cceeeecceeccccchhhhhcccCcCccHHHHHHHHHhcCCeEEEEeCCEEEEC
Confidence            444555555443  56766666543 456678999999999999999888778888999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 018060          221 GQPRDYITGLRLYLD  235 (361)
Q Consensus       221 ~t~~dy~~a~~~~l~  235 (361)
                      ||++||..+++.+.+
T Consensus       236 dt~~d~~~~~~~~~~  250 (259)
T d1tzfa_         236 DTLRDKVYLEGLWEK  250 (259)
T ss_dssp             CSHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHc
Confidence            999999999877654

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.96  E-value=7.7e-29  Score=211.53  Aligned_cols=214  Identities=21%  Similarity=0.354  Sum_probs=164.0

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++.|.++|++++++++++..+.++.+.+.|    ++++++..+
T Consensus         4 mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~~~----~i~i~~~~~   79 (229)
T d1jyka_           4 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKY----GVRLVFNDK   79 (229)
T ss_dssp             CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHHH----CCEEEECTT
T ss_pred             eeEEEECCCCcccCCccccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccchhhhhhhhhhc----ccccccccc
Confidence            8999999999999999999999999999999999999999999999999999998777665444433    788888888


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  160 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~  160 (361)
                      ..+.|++++++.+.+.+  .+  ++++..+|.++...+...+       ...........++..++.+..+++ +++..+
T Consensus        80 ~~~~Gt~~sl~~a~~~l--~~--~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~  147 (229)
T d1jyka_          80 YADYNNFYSLYLVKEEL--AN--SYVIDADNYLFKNMFRNDL-------TRSTYFSVYREDCTNEWFLVYGDD-YKVQDI  147 (229)
T ss_dssp             TTTSCTHHHHHTTGGGC--TT--EEEEETTEEESSCCCCSCC-------CSEEEEECEESSCSSCCEEEECTT-CBEEEE
T ss_pred             ccccccccccccchhhh--cc--cccccccccccccchhhhh-------hccccceeeeeeccccceeEEccC-CceeeE
Confidence            88899999999998887  22  6766666656554443221       223444445566777888888886 899999


Q ss_pred             eecCCCCCCCeEEEEEEEeCHhhHhhcc----------CCCCccccchHHhHHhcCceEEEEecc-eEEEcCCHHHHHHH
Q 018060          161 VEKPKLFVGNKINAGIYLLNPAVLDRIE----------LRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYITG  229 (361)
Q Consensus       161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~----------~~~~~~~~d~l~~l~~~~~i~~~~~~~-~~~~i~t~~dy~~a  229 (361)
                      .++|.   .....+|+|+|++...+.+.          +....+..+++..++.+..++.+...+ .|.+++|++||.++
T Consensus       148 ~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a  224 (229)
T d1jyka_         148 IVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKL  224 (229)
T ss_dssp             ECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHH
T ss_pred             EEecc---cceEEEEEEEEcHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHH
Confidence            88754   34567899999987654331          112223345566677777888887766 69999999999999


Q ss_pred             HHHH
Q 018060          230 LRLY  233 (361)
Q Consensus       230 ~~~~  233 (361)
                      ++.+
T Consensus       225 ~~~~  228 (229)
T d1jyka_         225 EEIL  228 (229)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7653

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2.9e-29  Score=218.36  Aligned_cols=223  Identities=24%  Similarity=0.348  Sum_probs=159.4

Q ss_pred             Ce--EEEEecCCCcccCCC-CCCCCCcccee-CCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEE
Q 018060            1 MK--ALILVGGFGTRLRPL-TLSVPKPLVEF-ANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKI   75 (361)
Q Consensus         1 m~--avIla~G~g~rl~~l-t~~~pK~llpl-~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i   75 (361)
                      |+  |||||||.|+||+|| +..+||+|+|+ +|+|||+++++++... +.++++++++...+.+.++...     +..+
T Consensus         1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~-----~~~i   75 (268)
T d2cu2a2           1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYAD-----GIRL   75 (268)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCS-----SSEE
T ss_pred             CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhcc-----ccce
Confidence            77  899999999999999 67889999997 5799999999998874 5788999888876655544322     3444


Q ss_pred             EEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCH--HHHHHHH---HHcCCceEEEEEEccCCCCceeEEE
Q 018060           76 ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPF--AEMIEFH---KAHGGEASIMVTKVDEPSKYGVVVM  150 (361)
Q Consensus        76 ~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l--~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~  150 (361)
                        ..+..+.|++.++..+...+....++.++|++||+++..++  ...+..+   .+++..+++...+.+.+..||++..
T Consensus        76 --i~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~  153 (268)
T d2cu2a2          76 --LLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRL  153 (268)
T ss_dssp             --EEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEE
T ss_pred             --eeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccccccccceEEe
Confidence              34555678888888776554333445899999999888764  3344432   2334455666666777889999998


Q ss_pred             cCCC---CeEeeeeecCCC-------CCCCeEEEEEEEeCHhhHhhccC--CC-----------CccccchHHh------
Q 018060          151 EEST---GKVEKFVEKPKL-------FVGNKINAGIYLLNPAVLDRIEL--RP-----------TSIEKEVFPK------  201 (361)
Q Consensus       151 ~~~~---~~v~~~~ek~~~-------~~~~~~~~Giyi~~~~~l~~l~~--~~-----------~~~~~d~l~~------  201 (361)
                      +++.   .+|.+|.|||..       ....++++|+|+|+++.+.....  .+           .....+.++.      
T Consensus       154 ~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSi  233 (268)
T d2cu2a2         154 GPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISI  233 (268)
T ss_dssp             EEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCH
T ss_pred             ccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccc
Confidence            7642   279999999973       13468999999999987743210  00           0111122222      


Q ss_pred             ----HHhcCceEEEEecceEEEcCCHHHHHHHH
Q 018060          202 ----IALEGKLFAMVLPGFWMDIGQPRDYITGL  230 (361)
Q Consensus       202 ----l~~~~~i~~~~~~~~~~~i~t~~dy~~a~  230 (361)
                          |.+..++.+++++++|.|+++++++.+..
T Consensus       234 DyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~  266 (268)
T d2cu2a2         234 DYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (268)
T ss_dssp             HHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             hhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence                22446799999999999999999888764

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.93  E-value=1.3e-25  Score=193.62  Aligned_cols=224  Identities=23%  Similarity=0.336  Sum_probs=173.7

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .|||||||+|+||+|   ..||||+|++|+|||+|+++.|.++|++++++++++..+....+...     ...  +....
T Consensus         3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~-----~~~--~~~~~   72 (250)
T d1g97a2           3 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-----QTE--FVTQS   72 (250)
T ss_dssp             EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTT-----TSE--EEECS
T ss_pred             EEEEECCCCCCCCCC---CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEecccccchhhhhccc-----ccc--ccccc
Confidence            499999999999999   68999999999999999999999999999999999987666666443     122  23455


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      .+.|+..++..+...+..... +++++.+|.  +...+++++++.|......+++...+...+..++.+..+.. +.+..
T Consensus        73 ~~~g~~~~~~~a~~~l~~~~~-~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  150 (250)
T d1g97a2          73 EQLGTGHAVMMTEPILEGLSG-HTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLR  150 (250)
T ss_dssp             SCCCHHHHHHTTHHHHTTCCS-EEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred             cccccchHHHHHHHhhhcccC-cceEEecCCCccCHHHHHHHHHHHhhhccccccccceecccCCCceEEEeec-eEEEE
Confidence            567888999998888764444 455555544  45566999999999999889988888888888888887775 78888


Q ss_pred             eeecCCC----CCCCeEEEEEEEeCHhhHhhc-c---C---CCCccccchHHhHHhcC-ceEEEEecceEEE--cCCHHH
Q 018060          160 FVEKPKL----FVGNKINAGIYLLNPAVLDRI-E---L---RPTSIEKEVFPKIALEG-KLFAMVLPGFWMD--IGQPRD  225 (361)
Q Consensus       160 ~~ek~~~----~~~~~~~~Giyi~~~~~l~~l-~---~---~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~--i~t~~d  225 (361)
                      +.+++..    ...++..+|+|+|+...+... .   .   ....+..++++.+++++ ++.++.++++|.+  ++|++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~d  230 (250)
T d1g97a2         151 IVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVA  230 (250)
T ss_dssp             EECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHH
T ss_pred             eeccccccccccccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHH
Confidence            8887653    356789999999998765432 1   1   12334567788888775 6889999998855  789999


Q ss_pred             HHHHHHHHHHhh
Q 018060          226 YITGLRLYLDSL  237 (361)
Q Consensus       226 y~~a~~~~l~~~  237 (361)
                      +-.+.+.+.++.
T Consensus       231 L~~ae~~~~~~~  242 (250)
T d1g97a2         231 LATAESVMRRRI  242 (250)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988887766543

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.9e-23  Score=179.71  Aligned_cols=222  Identities=24%  Similarity=0.326  Sum_probs=158.9

Q ss_pred             CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      |++||||||+|+||.|   ..||||+|++|+|||+|+|+.|.+.++++++|++++..+.+..+...      ....+..+
T Consensus         3 MkvIILAAG~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~------~~~~~~~~   73 (248)
T d2oi6a2           3 MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKD------DNLNWVLQ   73 (248)
T ss_dssp             EEEEEECCSCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCC------TTEEEEEC
T ss_pred             ceEEEECCCCCCCCCC---CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccceeeeeccc------cccccccc
Confidence            8999999999999998   78999999999999999999999999999999999987777666543      22334456


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHH-HHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFH-KAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  159 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~  159 (361)
                      ....|+++++..+...+.  .+.++++..+|..+.... .+...+ ........++..+..++..++.+..+.  +....
T Consensus        74 ~~~~g~~~~~~~~~~~i~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  148 (248)
T d2oi6a2          74 AEQLGTGHAMQQAAPFFA--DDEDILMLYGDVPLISVE-TLQRLRDAKPQGGIGLLTVKLDDPTGYGRITREN--GKVTG  148 (248)
T ss_dssp             SSCCCHHHHHHHHGGGSC--TTSEEEEEETTCTTCCHH-HHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEET--TEEEE
T ss_pred             ccCcccHHHHHhhhhhhc--cccceeeecCccccccch-hHHHHHHHhhccccceeEEEecCCcccccccccc--Cccce
Confidence            667899999999999884  334788888888654321 111222 223344566666777888888777665  45555


Q ss_pred             eeecCC----CCCCCeEEEEEEEeCHhhHhh-cc---CC--C-CccccchHHhHHhcC-ceEEEEecceEE--EcCCHHH
Q 018060          160 FVEKPK----LFVGNKINAGIYLLNPAVLDR-IE---LR--P-TSIEKEVFPKIALEG-KLFAMVLPGFWM--DIGQPRD  225 (361)
Q Consensus       160 ~~ek~~----~~~~~~~~~Giyi~~~~~l~~-l~---~~--~-~~~~~d~l~~l~~~~-~i~~~~~~~~~~--~i~t~~d  225 (361)
                      +.+++.    .....+..+|.|.|+...+.. +.   ..  . ..+..|+++.+++.+ .+.++...+.|.  .|+||+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eD  228 (248)
T d2oi6a2         149 IVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQ  228 (248)
T ss_dssp             EECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHH
T ss_pred             eeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHH
Confidence            544322    345567899999999876543 32   11  1 223357888888876 567776666552  4889999


Q ss_pred             HHHHHHHHHHh
Q 018060          226 YITGLRLYLDS  236 (361)
Q Consensus       226 y~~a~~~~l~~  236 (361)
                      +.++.+.+..+
T Consensus       229 L~~ae~i~~~~  239 (248)
T d2oi6a2         229 LSRLERVYQSE  239 (248)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998766543

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.67  E-value=5.2e-16  Score=133.28  Aligned_cols=117  Identities=20%  Similarity=0.258  Sum_probs=76.4

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe-----------------
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-----------------  305 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-----------------  305 (361)
                      .+++++.|++++.|++++.||++|+|++++.||++|+|+++|.|. ++.|++++.|.++++|+                 
T Consensus         2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~i   81 (259)
T d1j2za_           2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELII   81 (259)
T ss_dssp             CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEE
T ss_pred             cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEe
Confidence            467777777777777777777777777777777777777777776 57777777666666652                 


Q ss_pred             ---------------------ccEEcCCCEECC------------------CcEEcCceEECCCeEECCceEE-------
Q 018060          306 ---------------------SSIIGWHSTVGQ------------------WARVENMTILGEDVHVCDEIYS-------  339 (361)
Q Consensus       306 ---------------------~~~i~~~~~ig~------------------~~~i~~~~~ig~~~~v~~~~~i-------  339 (361)
                                           +++||+++.++.                  ++.+..++.||++|++|.++.+       
T Consensus        82 g~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG  161 (259)
T d1j2za_          82 GEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIA  161 (259)
T ss_dssp             CSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred             ccccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEec
Confidence                                 012222222211                  1122223555666666655555       


Q ss_pred             cCcEEccCceeecccCCCccc
Q 018060          340 NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       340 ~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      .++.|++++.|.+++|+++++
T Consensus       162 ~~a~IgagSvV~kdVp~~~i~  182 (259)
T d1j2za_         162 KGCMIAGKSALGKDVPPYCTV  182 (259)
T ss_dssp             TTCEECTTCEECSBBCTTEEE
T ss_pred             cceeeeeeeeeccccccceeE
Confidence            368889999999999998875

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=3.2e-15  Score=125.48  Aligned_cols=208  Identities=13%  Similarity=0.099  Sum_probs=123.9

Q ss_pred             Ce-EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEe
Q 018060            1 MK-ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS   78 (361)
Q Consensus         1 m~-avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~   78 (361)
                      |+ |||||||.|+||+.   ..||+|++++|+|||+|+|+.+.+++ ++.|+|+++.....   ++.... .....+.+.
T Consensus         3 M~iAIILAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~---~~~~~~-~~~~~~~~~   75 (221)
T d1vpaa_           3 MNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFE---VVEKRV-FHEKVLGIV   75 (221)
T ss_dssp             CEEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHH---HHHTTC-CCTTEEEEE
T ss_pred             CeEEEEccCcCcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhh---HHHhhh-ccccccccc
Confidence            65 69999999999986   78999999999999999999999884 89999998764322   222211 112233333


Q ss_pred             cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCe
Q 018060           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGK  156 (361)
Q Consensus        79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~  156 (361)
                      ...  .+...+...+...+.....+.++++.+|. +.. ..+..+++.+.+...  .+...+..+    .+...+.  ++
T Consensus        76 ~~~--~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~d----~~~~~~~--~~  145 (221)
T d1vpaa_          76 EGG--DTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD----ALVRVEN--DR  145 (221)
T ss_dssp             ECC--SSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS----EEEEEET--TE
T ss_pred             ccc--ccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhccccc--ccccccccc----eeEeecC--cc
Confidence            322  23456666666655444555899999998 333 447888888766543  222222222    2333332  23


Q ss_pred             EeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHH
Q 018060          157 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       157 v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~  231 (361)
                      ...+.   +  ...+...+-+.|..+.+.....+...+ .|....+...+ ++..+.-+.....|+||+|+-.|..
T Consensus       146 ~~~~~---~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~  215 (221)
T d1vpaa_         146 IEYIP---R--KGVYRILTPQAFSYEILKKAHENGGEW-ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARI  215 (221)
T ss_dssp             EEEEC---C--TTEEEEEEEEEEEHHHHHHHHTTCCCC-SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHH
T ss_pred             ceecc---h--HHHHHhhhhhhhhHHHHHHHHHhCCCC-ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHH
Confidence            22221   1  223456677788777666543333333 23334444333 4544443333346899999766643

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.64  E-value=2.1e-15  Score=125.07  Aligned_cols=109  Identities=17%  Similarity=0.230  Sum_probs=88.7

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEE----CCCcEECCCCEECCCcEEe------------------------ceEEc
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS------------------------RCTVM  293 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~------------------------~~~i~  293 (361)
                      ..++++++.|.+++.||++++|+++|+|    +.+..||++|.|+++|.|.                        ++.|+
T Consensus        28 ~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG  107 (210)
T d1qrea_          28 TAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIG  107 (210)
T ss_dssp             TCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEEC
T ss_pred             CCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeec
Confidence            3345566666667778888888888888    4567889999999999883                        47899


Q ss_pred             cCcEECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceee
Q 018060          294 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  351 (361)
Q Consensus       294 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~  351 (361)
                      ++|.||+++.|.+ ++||+++.||.++.+.+ +.||++++|++++.+.++.+.+++.|.
T Consensus       108 ~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv~g~~i~~g~~I~  165 (210)
T d1qrea_         108 NNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIP  165 (210)
T ss_dssp             TTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEEC
T ss_pred             cccccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEecCcEeCCCcEEC
Confidence            9999999999975 89999999999999997 789999999999988877666665553

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=4.8e-16  Score=106.67  Aligned_cols=72  Identities=13%  Similarity=0.265  Sum_probs=61.5

Q ss_pred             CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCC
Q 018060          247 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQW  318 (361)
Q Consensus       247 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~  318 (361)
                      ....+.+++.||+++.|+++++|.+++.||++|+||++|.|.||.|++++.|+++++|++|+|+++|.||++
T Consensus         7 ~~~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf   78 (78)
T d1fxja1           7 ARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPF   78 (78)
T ss_dssp             GGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred             CeEEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence            455688889999999999999998888899999999988888888888888888888888888888888763

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.62  E-value=5.3e-15  Score=126.83  Aligned_cols=119  Identities=19%  Similarity=0.230  Sum_probs=70.5

Q ss_pred             cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-c------------------------------e
Q 018060          242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-R------------------------------C  290 (361)
Q Consensus       242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~------------------------------~  290 (361)
                      ...+++++.|++++.|++++.|+++|+|++++.||++|.|+++|.|. +                              .
T Consensus         5 ~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v   84 (262)
T d2jf2a1           5 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRV   84 (262)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceE
Confidence            34566666666666666666666666666666666666666666664 2                              2


Q ss_pred             EEccCcEECCCCEEec--------------------cEEcCCCEECCCcE------EcCceEECCCeEECCceEE-----
Q 018060          291 TVMRGVRIKKHACISS--------------------SIIGWHSTVGQWAR------VENMTILGEDVHVCDEIYS-----  339 (361)
Q Consensus       291 ~i~~~~~i~~~~~i~~--------------------~~i~~~~~ig~~~~------i~~~~~ig~~~~v~~~~~i-----  339 (361)
                      .|++++.|++++.+..                    +.|+.+|.||+++.      +.+.++||++|++|.++.+     
T Consensus        85 ~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~  164 (262)
T d2jf2a1          85 EIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCI  164 (262)
T ss_dssp             EECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             EECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccE
Confidence            3455555555555431                    12223333333332      2234556666666655555     


Q ss_pred             --cCcEEccCceeecccCCCccc
Q 018060          340 --NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       340 --~~~~i~~~~~v~~~~~~~~~~  360 (361)
                        .++.+++++.|.+++|+++++
T Consensus       165 IG~~a~igagS~Vtkdvp~~~~~  187 (262)
T d2jf2a1         165 IGAHVMVGGCSGVAQDVPPYVIA  187 (262)
T ss_dssp             ECTTCEECSSCEECSBBCTTEEE
T ss_pred             eehhceeeccceEeecCCccccc
Confidence              368888999999999998764

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.3e-15  Score=126.66  Aligned_cols=211  Identities=15%  Similarity=0.139  Sum_probs=122.5

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .|||||||.|+||+.   ..||+|.|++|+|||+|+++.+.++ ++++++|+++++...........    ...+.+..+
T Consensus         5 ~AIILAaG~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~----~~~v~~~~~   77 (225)
T d1i52a_           5 CAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLAN----HPQITVVDG   77 (225)
T ss_dssp             EEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGG----CTTEEEEEC
T ss_pred             EEEEeCCCcceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhcc----ccccccccC
Confidence            389999999999986   8899999999999999999999888 58999999987654443332221    112222222


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                      .  .+..++++.+...+.  +.+.+++..+|. +. ...+..+++...... ...+...+..+...   ...... +...
T Consensus        78 ~--~~~~~sv~~~~~~~~--~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~-~~~v~~~~~~d~~~---~~~~~~-~~~~  148 (225)
T d1i52a_          78 G--DERADSVLAGLKAAG--DAQWVLVHDAARPCLHQDDLARLLALSETSR-TGGILAAPVRDTMK---RAEPGK-NAIA  148 (225)
T ss_dssp             C--SSHHHHHHHHHHTST--TCSEEEECCTTCTTCCHHHHHHHHGGGGTCS-SCEEEEEECCSCEE---EECTTS-SSEE
T ss_pred             C--cchhHHHHhhhcccC--ccceeeeeccCCCCCCHHHHHHHHhhhhhcc-cccccccceeeccc---hhcccc-cccc
Confidence            2  245688888888883  444788888887 33 334666666655443 34444444433211   111221 3333


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhccCC---CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRL  232 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~---~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~  232 (361)
                      ...++    .......+.+.|....+....++   ......|....+...+ ++..+.-+..-..|+||+|+..|...
T Consensus       149 ~~~~~----~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~  222 (225)
T d1i52a_         149 HTVDR----NGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFY  222 (225)
T ss_dssp             EEECC----TTCEEEEEEEEEEHHHHHHHHHHHHHTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred             cccch----HHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHH
Confidence            33222    11223345666776655432111   1111234444444433 34444322223458999999887653

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.61  E-value=1.8e-14  Score=117.58  Aligned_cols=124  Identities=14%  Similarity=0.071  Sum_probs=91.1

Q ss_pred             EEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEE--cCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEc
Q 018060          217 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLV--HESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  293 (361)
Q Consensus       217 ~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~  293 (361)
                      ..-++++....+....+.. ........+++++.+.+++.|  ++++.|+++++|++++.||++|.|+.++.|. ++.|+
T Consensus        50 ~iaIG~~~~R~~~~~~~~~-~~~~~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig  128 (193)
T d3bswa1          50 FIAIGNNEIRKKIYQKISE-NGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG  128 (193)
T ss_dssp             EECCSCHHHHHHHHHHHHH-TTCCBCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEEECCcHHHHHHHHHhhh-hccccceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecc
Confidence            4456776644444333322 222334567788888888777  4467888888888888888888888888887 68888


Q ss_pred             cCcEECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          294 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       294 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ++|.+++++.+.+ +.||++|+||.++.|.+++.||++++|++++++..
T Consensus       129 ~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~  177 (193)
T d3bswa1         129 EFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVK  177 (193)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEECc
Confidence            8888888888876 78888888888888888888888888888888754

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.58  E-value=1.7e-14  Score=118.62  Aligned_cols=52  Identities=19%  Similarity=0.245  Sum_probs=35.9

Q ss_pred             CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060          248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  299 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~  299 (361)
                      +++|.+++.|+++++|+++++|++++.||++|+|++++.|.++.|++++.|.
T Consensus         8 s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~   59 (196)
T d1g97a1           8 ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVIT   59 (196)
T ss_dssp             GCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEEC
T ss_pred             eEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCcccc
Confidence            4457777777777777777777777777777777777777666666665553

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.58  E-value=2.7e-14  Score=116.60  Aligned_cols=111  Identities=18%  Similarity=0.210  Sum_probs=76.2

Q ss_pred             ccCCcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCcE
Q 018060          245 LATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWAR  320 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~  320 (361)
                      ......+++.+.|++++.|+.  ++.|+++++|+++|+||++|.|. ++.|+++|.||+++.+.. +.++.++.||++  
T Consensus        71 ~~~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~--  148 (193)
T d3bswa1          71 FKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKN--  148 (193)
T ss_dssp             CCBCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT--
T ss_pred             cccceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccccccccccccceeecc--
Confidence            445567888888888888844  67888888888888888887775 567777777777666664 344555555544  


Q ss_pred             EcCceEECCCeEECCceEE-cCcEEccCceeecccCCCcccC
Q 018060          321 VENMTILGEDVHVCDEIYS-NGGVVLPHKEIKSSILKPEIVM  361 (361)
Q Consensus       321 i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~~~~~~~~~  361 (361)
                          |.||.++.|.+++.| .++.+++++.|.++++++++++
T Consensus       149 ----~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~~~~  186 (193)
T d3bswa1         149 ----CFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFV  186 (193)
T ss_dssp             ----CEECTTCEECTTCEECTTCEECTTCEECSCBCSCCEEC
T ss_pred             ----ccCCceeeEcCCeEECCCCEECCCCEECcCCCCCcEEE
Confidence                444445555555555 3566777888889999988763

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.57  E-value=8e-15  Score=123.38  Aligned_cols=211  Identities=13%  Similarity=0.193  Sum_probs=116.4

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .+||||||.|+||+.   ..||+|++++|+|||+|+++.+.+++ +++|+|++++...   +.++++....+..+.+...
T Consensus         6 ~~IIlAaG~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~---~~~~~~~~~~~~~~~~~~g   79 (226)
T d1w77a1           6 SVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFR---DIFEEYEESIDVDLRFAIP   79 (226)
T ss_dssp             EEEEECCC----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGT---HHHHTTTTSCSSEEEEECC
T ss_pred             EEEEeCCccCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhh---hhhhccccccccccccccc
Confidence            489999999999987   78999999999999999999999885 7888888876432   3334433344555544432


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE  158 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~  158 (361)
                        .....++++.++..+... .+.+++..||. + ....+..+++.+.+.+.  .+...+..+....    ...+ +...
T Consensus        80 --g~~r~~sv~~~l~~~~~~-~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~--~i~~~~~~d~~~~----~~~~-~~~~  149 (226)
T d1w77a1          80 --GKERQDSVYSGLQEIDVN-SELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPAKATIKE----VNSD-SLVV  149 (226)
T ss_dssp             --CSSHHHHHHHHHHTSCTT-CSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEECCSCCCC----BCTT-SCBC
T ss_pred             --cchhhhhhhhhHhhhccc-cccceecccccccccHHHhhhhhhhhhccCc--eeeccccccceEE----EccC-Ccee
Confidence              112357888888877533 34788999999 3 33457888888776653  2333333222111    0111 1221


Q ss_pred             eeeecCCCCCCCeEEEEEEEeCHhhHhhc----cCCCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060          159 KFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l----~~~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~~~  233 (361)
                      ...+    .......-+-++|+...+...    ......+ .|....+.. ..++..+.-+..-+.|+||+|+..|.+.+
T Consensus       150 ~~~~----r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL  224 (226)
T d1w77a1         150 KTLD----RKTLWEMQTPQVIKPELLKKGFELVKSEGLEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL  224 (226)
T ss_dssp             ----------CCEEEEEEEEECHHHHHHHHHHHHHSCCCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred             eccc----chhhhHHHHHHhHhhHHHHHHHHHHHhcCCCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence            1111    122234456788887766432    1111111 121111112 33444433222334589999999886543

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.55  E-value=2.9e-13  Score=115.21  Aligned_cols=216  Identities=18%  Similarity=0.168  Sum_probs=139.5

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      -|||+|.|.++|+..      |.|.+++|+|||+|+++.+.++++++|+|++..  +++.++..++    |.++.+....
T Consensus         3 i~iIpAR~gSkrip~------KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~--~~i~~~~~~~----g~~v~~~~~~   70 (246)
T d1vh1a_           3 VVIIPARYASTRLPG------KPLVDINGKPMIVHVLERARESGAERIIVATDH--EDVARAVEAA----GGEVCMTRAD   70 (246)
T ss_dssp             EEEEECCCCCC--CC------TTTCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT----TCEEEECC--
T ss_pred             EEEEecCCCCcCCCC------chhhhcCCccHHHHHHHHHHHcCCCcEEEEecC--ccccchhhcc----cccceeeccc
Confidence            489999999999833      999999999999999999999999999998865  5566666654    6677666555


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHHcCCceEEEEEEccCCC-----CceeEEEcCCC
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMVTKVDEPS-----KYGVVVMEEST  154 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~v~~~~~~  154 (361)
                      ...++ ++...+.......+.+.++.+.+|...  ..++..++..+............+.....     ....+..+.+ 
T Consensus        71 ~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~-  148 (246)
T d1vh1a_          71 HQSGT-ERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAE-  148 (246)
T ss_dssp             ---CH-HHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTT-
T ss_pred             ccccc-hHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeeccc-
Confidence            44444 344444444332334478889999943  34588888888888776666555543221     1223444554 


Q ss_pred             CeEeeeeecCC-------------CCCCCeEEEEEEEeCHhhHhhccCCC-Cccc----cchHHhHHhcCceEEEEecc-
Q 018060          155 GKVEKFVEKPK-------------LFVGNKINAGIYLLNPAVLDRIELRP-TSIE----KEVFPKIALEGKLFAMVLPG-  215 (361)
Q Consensus       155 ~~v~~~~ek~~-------------~~~~~~~~~Giyi~~~~~l~~l~~~~-~~~~----~d~l~~l~~~~~i~~~~~~~-  215 (361)
                      +.+..+.+.+.             .....+...|+|+|++..+....... ...+    -|.++.+-....+..+.++. 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~lR~i~~g~~i~~~~~~~~  228 (246)
T d1vh1a_         149 GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEV  228 (246)
T ss_dssp             SBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSC
T ss_pred             CcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHHhHHHHHHHHCCCceEEEEecCC
Confidence            77777754432             12334678899999999887553211 1111    13455443344677777664 


Q ss_pred             eEEEcCCHHHHHHHHH
Q 018060          216 FWMDIGQPRDYITGLR  231 (361)
Q Consensus       216 ~~~~i~t~~dy~~a~~  231 (361)
                      ...+|||++|+..+.+
T Consensus       229 ~~~~IDt~~Dl~~a~k  244 (246)
T d1vh1a_         229 PGTGVDTPEDLERVRA  244 (246)
T ss_dssp             CCCCCCSHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHh
Confidence            4579999999988765

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.55  E-value=2e-14  Score=120.87  Aligned_cols=209  Identities=14%  Similarity=0.142  Sum_probs=107.0

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      |||||||.|+||+.   ..||+|++++|+|||+|+++.+.+++ ++.++|+++.+. .+...+.....  .... +..  
T Consensus         6 AIIlAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~-~~~~~~~~~~~--~~~~-~~~--   76 (226)
T d1vgwa_           6 ALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADKVQTAFP--QVRV-WKN--   76 (226)
T ss_dssp             EEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHHHHHHCT--TSEE-ECC--
T ss_pred             EEEeCCCCcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhh-hhhhhhccccc--ceee-ccc--
Confidence            89999999999975   78999999999999999999999886 678888877653 33344443211  1222 111  


Q ss_pred             CCCCCchHHHHHHh----hccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCC
Q 018060           82 EPLGTAGPLALARD----KLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG  155 (361)
Q Consensus        82 ~~~g~~~al~~~~~----~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~  155 (361)
                      ......++...+..    .....+.+.+++..+|. +. ...+..+++.+........ ...+..+    .....+.  +
T Consensus        77 g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i-~~~~~~~----~~~~~~~--~  149 (226)
T d1vgwa_          77 GGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGI-LAVPVAD----TLKRAES--G  149 (226)
T ss_dssp             CCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEE-EEEECCS----CEEEESS--S
T ss_pred             cccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhccccccee-ecccccc----cceeccC--C
Confidence            11122334443332    22223444788888987 33 3458888888876655443 3333322    2233232  5


Q ss_pred             eEeeeeecCCCCCCCeEEEEEEEeCHhhHhh-ccCCCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHH
Q 018060          156 KVEKFVEKPKLFVGNKINAGIYLLNPAVLDR-IELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLR  231 (361)
Q Consensus       156 ~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~-l~~~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~  231 (361)
                      .+....+++.    -.....-..|..+.+.. +.........|....+.. ..++..+.-+...+.|+||+|+..+..
T Consensus       150 ~i~~~~~r~~----~~~~~~p~~f~~~~l~~~~~~~~~~~~tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~  223 (226)
T d1vgwa_         150 QISATVDRSG----LWQAQTPQLFQAGLLHRALAAENLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRL  223 (226)
T ss_dssp             BEEEEECCTT----EEEEEEEEEEEHHHHHHHHHC----CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred             eEEeccchHH----HHHHHhhhcccHHHHHHHHHHhhcCCCCcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHH
Confidence            6666554322    11111234555554432 222211111233333333 334544443334567999999887754

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.54  E-value=2e-14  Score=119.04  Aligned_cols=96  Identities=13%  Similarity=0.167  Sum_probs=64.7

Q ss_pred             cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEe------------------
Q 018060          249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACIS------------------  305 (361)
Q Consensus       249 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~------------------  305 (361)
                      ..|+++++|+|+|.|..      ++.||++|.|+++|.|.     +..|+++|.|+++|+|+                  
T Consensus        23 p~I~~~a~I~p~A~i~g------~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~   96 (210)
T d1qrea_          23 PVIDPTAYIDPQASVIG------EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVE   96 (210)
T ss_dssp             CEECTTCEECTTCEEEE------SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEE
T ss_pred             CccCCCCEECCCCEEec------ceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccc
Confidence            34555555555554444      44444444444444441     35667777777777773                  


Q ss_pred             ------ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          306 ------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       306 ------~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                            +++||++++||+++.|.++|.||++++||.++++.++.|+.++.|
T Consensus        97 ~~~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vI  147 (210)
T d1qrea_          97 VDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVL  147 (210)
T ss_dssp             ETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEE
T ss_pred             ccccccceeeccccccccccccccCCcccCCcEeeCCccccccccccCcEE
Confidence                  467999999999999988899999999999998876655554444

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.54  E-value=1.5e-12  Score=110.49  Aligned_cols=219  Identities=18%  Similarity=0.137  Sum_probs=138.8

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      |||+|.+.++|+.      .|+|++++|+|||+|+++.+.+++ +++|+|++..  +.+......+    +.++......
T Consensus         5 ~iIpAR~~SkRl~------~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~--~~i~~~~~~~----~~~~~~~~~~   72 (245)
T d1h7ea_           5 IVIPARYGSSRLP------GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF----GGKAIMTRND   72 (245)
T ss_dssp             EEEECCSCCSSST------TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT----TCEEEECCSC
T ss_pred             EEEcCCCCCcCCC------CccccccCCccHHHHHHHHHHhCCCCCeEEEeccc--ccchhhhhhc----CceEEEecCc
Confidence            7899999999973      399999999999999999998885 7888887765  3455554443    5666554433


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHHcCCceEEEEEEccC-----CCCceeEEEcCCC
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMVTKVDE-----PSKYGVVVMEEST  154 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~  154 (361)
                      . .+....+..+...+.   .|.++.+.+|...  ...+..+++.+................     ............ 
T Consensus        73 ~-~~~~~~~~~~~~~~~---~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~-  147 (245)
T d1h7ea_          73 H-ESGTDRLVEVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTR-  147 (245)
T ss_dssp             C-SSHHHHHHHHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTT-
T ss_pred             c-ccccHHHHHHHHhcC---CCEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeeccchh-
Confidence            3 234556666666662   3378889999943  234788888877665443333222211     111122222332 


Q ss_pred             CeEeeeeecCCC------CCCCeEEEEEEEeCHhhHhhccCC-CCccc----cchHHhHHhcCceEEEEecceEEEcCCH
Q 018060          155 GKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRIELR-PTSIE----KEVFPKIALEGKLFAMVLPGFWMDIGQP  223 (361)
Q Consensus       155 ~~v~~~~ek~~~------~~~~~~~~Giyi~~~~~l~~l~~~-~~~~~----~d~l~~l~~~~~i~~~~~~~~~~~i~t~  223 (361)
                      +....+...+..      ........|+|+|+++.+..+..- ...++    -|.++.+-...++..+..++.+.+|||+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~  227 (245)
T d1h7ea_         148 QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTP  227 (245)
T ss_dssp             CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSH
T ss_pred             hhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCH
Confidence            455555443331      223357889999999988765422 11111    1334434344568888888888999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 018060          224 RDYITGLRLYLDSLR  238 (361)
Q Consensus       224 ~dy~~a~~~~l~~~~  238 (361)
                      +||..+...+..+..
T Consensus       228 ~Dl~~a~~il~~~~~  242 (245)
T d1h7ea_         228 ACLEKVRALMAQELA  242 (245)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999877665544

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.54  E-value=1.1e-12  Score=112.15  Aligned_cols=218  Identities=17%  Similarity=0.184  Sum_probs=141.3

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .|||+|.|.++|+..      |.|.+++|+|||+|+++.+.++++++|+|++..  +++.+...++    +..+.+....
T Consensus         3 ~~iIpAR~gSkRlp~------Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~~~~----~~~~~~~~~~   70 (255)
T d1vica_           3 TVIIPARFASSRLPG------KPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKSF----GAEVCMTSVN   70 (255)
T ss_dssp             EEEEECCCCCSSSTT------GGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT----TCEEEECCCS
T ss_pred             EEEEecCCCCCCCCC------chhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCC--cccchhhhhh----ccccceeeec
Confidence            589999999999732      999999999999999999999999998888765  4455555554    6677666665


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCeee-c-cCHHHHHHHHHHcCCceEEEEEEccC-----CCCceeEEEcCCC
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGEASIMVTKVDE-----PSKYGVVVMEEST  154 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~-~-~~l~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~  154 (361)
                      ...|+............ .+.+.++.+.+|..+ . .++..+++.+.......+........     .........+++ 
T Consensus        71 ~~~~~~~~~~~~~~~~~-~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  148 (255)
T d1vica_          71 HNSGTERLAEVVEKLAI-PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD-  148 (255)
T ss_dssp             SCCHHHHHHHHHHHTTC-CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT-
T ss_pred             cCCcchhhHHHHHHhhc-cCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeeccC-
Confidence            55445444443333332 344478888999933 3 34788888888877666665554322     122223344444 


Q ss_pred             CeEeeeeecCC-----------------CCCCCeEEEEEEEeCHhhHhhccCCCCc-cc----cchHHhHHhcCceEEEE
Q 018060          155 GKVEKFVEKPK-----------------LFVGNKINAGIYLLNPAVLDRIELRPTS-IE----KEVFPKIALEGKLFAMV  212 (361)
Q Consensus       155 ~~v~~~~ek~~-----------------~~~~~~~~~Giyi~~~~~l~~l~~~~~~-~~----~d~l~~l~~~~~i~~~~  212 (361)
                      +.+..+...+.                 .........|+|+|++..+..+...... ++    -+.++.+-....+..+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le~~e~le~lr~l~ng~~I~~~~  228 (255)
T d1vica_         149 GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVEL  228 (255)
T ss_dssp             SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEE
T ss_pred             CcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhHHHHhHHHHHHHHCCCceeEEE
Confidence            66666654432                 1123356889999999988765321111 10    12334443444676666


Q ss_pred             ecc-eEEEcCCHHHHHHHHHHH
Q 018060          213 LPG-FWMDIGQPRDYITGLRLY  233 (361)
Q Consensus       213 ~~~-~~~~i~t~~dy~~a~~~~  233 (361)
                      .+. .+.||||++||..+...+
T Consensus       229 ~~~~~~idIDt~eDl~~ae~il  250 (255)
T d1vica_         229 AKEVPAVGVDTAEDLEKVRAIL  250 (255)
T ss_dssp             CSSCCCCCCCSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCCHHHHHHHHHHH
Confidence            654 577999999999997654

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.49  E-value=1.4e-13  Score=117.73  Aligned_cols=78  Identities=24%  Similarity=0.333  Sum_probs=66.4

Q ss_pred             ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-----------------
Q 018060          245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-----------------  306 (361)
Q Consensus       245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-----------------  306 (361)
                      +++++.|++.++|+++++|++++.|+++|+|+++|+||++|.|. +++|++++.+++++.+..                 
T Consensus         2 i~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~   81 (262)
T d2jf2a1           2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEP   81 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCC
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccC
Confidence            56789999999999999999999999999999999999999998 799999999888888753                 


Q ss_pred             --cEEcCCCEECCCcEEc
Q 018060          307 --SIIGWHSTVGQWARVE  322 (361)
Q Consensus       307 --~~i~~~~~ig~~~~i~  322 (361)
                        ..||+++.|++++.+.
T Consensus        82 ~~v~IG~~v~ig~~~~i~   99 (262)
T d2jf2a1          82 TRVEIGDRNRIRESVTIH   99 (262)
T ss_dssp             CEEEECSSCEECTTCEEE
T ss_pred             ceEEECCeeeecceEecc
Confidence              3467776666666654

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=3.7e-14  Score=97.09  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=60.5

Q ss_pred             EECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060          268 LIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  335 (361)
Q Consensus       268 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~  335 (361)
                      .|.+++.||++|.|++++.|. ++.|+++|.||++|+|++|+|++++.|++++.|.+ ++||++++||+
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~-~~Ig~~~~IGP   77 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED-ANLAAACTIGP   77 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEES-EEECTTCEESC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEEC-CEECCCCEECc
Confidence            466677888888888888887 68899999999999999999999999999999987 99999999986

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=7.8e-14  Score=113.70  Aligned_cols=107  Identities=24%  Similarity=0.317  Sum_probs=73.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .|||||||+|+||+.    .||+|++++|+|||+|+++.+... +.+++|+++.+.+...    .    .+..+......
T Consensus         5 ~~iILAgG~ssRmG~----~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~~~~~----~----~~~~v~~d~~~   71 (188)
T d1e5ka_           5 TGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQEIYQ----A----SGLKVIEDSLA   71 (188)
T ss_dssp             EEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSHHHHH----T----TSCCEECCCTT
T ss_pred             eEEEEcCCCCcCCCC----CCcccCEECCEehhHHHHhhhccc-ccccccccCccHHhhh----h----cCCCccccccc
Confidence            489999999999974    489999999999999999999887 6778888777643211    1    13444433333


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccC-HHHHHHH
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEF  124 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~-l~~~~~~  124 (361)
                      ...+....+..+....   ..+.+++++||+ +...+ ++.+++.
T Consensus        72 ~~~~~~~g~~~~~~~~---~~~~vlv~~~D~P~i~~~~i~~L~~~  113 (188)
T d1e5ka_          72 DYPGPLAGMLSVMQQE---AGEWFLFCPCDTPYIPPDLAARLNHQ  113 (188)
T ss_dssp             CCCSHHHHHHHHHHHC---CSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             cccchhHHHHHHHHhc---ccceEEEeccCCCCCCHHHHHHHHHh
Confidence            3344555566655554   234899999999 33444 5666553

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.48  E-value=2.4e-13  Score=109.00  Aligned_cols=110  Identities=17%  Similarity=0.171  Sum_probs=83.9

Q ss_pred             ccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEec-----eEEccCcEECCCCEEeccEEcCCCE
Q 018060          243 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHST  314 (361)
Q Consensus       243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~  314 (361)
                      ..+++.+.|.+++.||+++.|+++|+|++.   +.||.++.+++++.+..     +.+++++.++.++.+.++.|+++++
T Consensus        19 ~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~~   98 (172)
T d1xhda_          19 AFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDAL   98 (172)
T ss_dssp             CEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCE
T ss_pred             cEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccceE
Confidence            345555555566666666666666666432   47778888888887763     6788899999999999999999999


Q ss_pred             ECCCcEEcCceEECCCeEECCceEEcC-cEEccCceeec
Q 018060          315 VGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEIKS  352 (361)
Q Consensus       315 ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v~~  352 (361)
                      ||.++.|.++++||++++|++++.+.+ ..+.+++++..
T Consensus        99 ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~~G  137 (172)
T d1xhda_          99 IGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFG  137 (172)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEE
T ss_pred             EecccEeeCCcEEcCcccccceEEEeeCeEECCCeEEEe
Confidence            999999999999999999999999975 45555555533

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=2.2e-14  Score=121.09  Aligned_cols=115  Identities=19%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~   81 (361)
                      .|||||||+|+||.+++. .||+|+|++|+|||+|+++.+.+++++.+++++++....               .......
T Consensus         4 ~avIlA~G~~~r~~r~g~-~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~~---------------~~~~~~~   67 (231)
T d2dpwa1           4 SAIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVP---------------APALTLP   67 (231)
T ss_dssp             EEEEECCCBCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCSS---------------CCSEEEC
T ss_pred             eEEEECCCCCCCCCCCCC-CCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeeccccc---------------eeeeecc
Confidence            499999999999988763 479999999999999999999999998988888774210               0011123


Q ss_pred             CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEEEEE
Q 018060           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTK  138 (361)
Q Consensus        82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~~~~  138 (361)
                      ...|..+++..+.+.+.    +.+++++||. + ....++.+++.+.+  .++.+.+.+
T Consensus        68 ~~~~~~~~v~~al~~~~----~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~  120 (231)
T d2dpwa1          68 DRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIVP  120 (231)
T ss_dssp             CCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEEE
T ss_pred             cchHHHHHHHHHHHhhc----CceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEEe
Confidence            34578889999888873    2899999999 3 34457888876543  334444433

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.7e-13  Score=109.83  Aligned_cols=35  Identities=11%  Similarity=0.142  Sum_probs=30.3

Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .+|+++++||.++.|.+|+.||++++|++++++..
T Consensus       131 v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~k  165 (200)
T d1krra_         131 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTK  165 (200)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             EEEccCcccceeeecccccccCCCcEEeCCCEEee
Confidence            47899999999999999999999999999888853

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.45  E-value=5.2e-13  Score=110.61  Aligned_cols=97  Identities=13%  Similarity=0.204  Sum_probs=79.8

Q ss_pred             cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec-eEEccCcEECCCCEEec---------cEEcCCC
Q 018060          244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISS---------SIIGWHS  313 (361)
Q Consensus       244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------~~i~~~~  313 (361)
                      .+.+++.+..+++|++++.+. .+++.-+++||++|.|...+.|+. +.||++|+|+.++.|++         ++|+++|
T Consensus       104 RvvPga~VR~GayI~~~vVlm-ps~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~  182 (274)
T d3tdta_         104 RVVPPATVRQGAFIARNTVLM-PSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNC  182 (274)
T ss_dssp             EECTTCEEBTTCEECTTCEEC-SEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTC
T ss_pred             EeCCCceeccCcEECCCcEEe-eeEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCc
Confidence            456677788888888887654 467777788888888888888874 57888888888888874         3699999


Q ss_pred             EECCCcEEcCceEECCCeEECCceEEcC
Q 018060          314 TVGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      .||++|.+.+|++||++++|++|+++..
T Consensus       183 ~IGa~s~v~egv~Vg~~avi~~gv~i~~  210 (274)
T d3tdta_         183 FIGARSEVVEGVIVEEGSVISMGVYLGQ  210 (274)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EeccCceEecCEEecCceEeccceEEec
Confidence            9999999999999999999999999965

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=5.5e-13  Score=109.79  Aligned_cols=37  Identities=19%  Similarity=0.406  Sum_probs=25.9

Q ss_pred             eEECCCeEECCceE------E-cCcEEccCceeecccCCCcccC
Q 018060          325 TILGEDVHVCDEIY------S-NGGVVLPHKEIKSSILKPEIVM  361 (361)
Q Consensus       325 ~~ig~~~~v~~~~~------i-~~~~i~~~~~v~~~~~~~~~~~  361 (361)
                      ++||+++.+|.++.      + .++.+++++.|.+++|++++++
T Consensus       144 ~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdVp~~si~v  187 (201)
T d2oi6a1         144 TIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAI  187 (201)
T ss_dssp             EEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             cEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeeecCCCCEEE
Confidence            45555555555544      4 3678899999999999998753

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.40  E-value=7.7e-13  Score=113.16  Aligned_cols=40  Identities=15%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             EEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccC
Q 018060          308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  347 (361)
Q Consensus       308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~  347 (361)
                      .+..++.||++|.|+.++.|..++.||+++++..+.++.+
T Consensus       135 ~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~k  174 (259)
T d1j2za_         135 TLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGK  174 (259)
T ss_dssp             EECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cccccccccccceecceeeeecccEeccceeeeeeeeecc
Confidence            3556677888888877788888888888888876555444

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.40  E-value=1e-12  Score=105.28  Aligned_cols=107  Identities=16%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec-----cEEcCCCEECCCcEEcC
Q 018060          253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVEN  323 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~  323 (361)
                      ..+.|+++++|+++++|.+++.||++|.|+++|.|.    +..|++++.+++++.+..     +++++++.++..+.+.+
T Consensus        11 ~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~   90 (172)
T d1xhda_          11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS   90 (172)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred             cCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccc
Confidence            345666777777777776677777777777777775    368999999999998885     47788887777776654


Q ss_pred             ceEECCCeEEC------CceEE-cCcEEccCceee--cccCCCccc
Q 018060          324 MTILGEDVHVC------DEIYS-NGGVVLPHKEIK--SSILKPEIV  360 (361)
Q Consensus       324 ~~~ig~~~~v~------~~~~i-~~~~i~~~~~v~--~~~~~~~~~  360 (361)
                       +.|++++.++      +++.| .++.|++++.|.  .++|+++++
T Consensus        91 -~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~  135 (172)
T d1xhda_          91 -CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA  135 (172)
T ss_dssp             -CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             -cccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEE
Confidence             4444444444      44444 367778888886  468888765

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.40  E-value=3.8e-12  Score=106.38  Aligned_cols=202  Identities=12%  Similarity=0.147  Sum_probs=129.4

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC-
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE-   80 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~-   80 (361)
                      |||+|.|.++|+ |     .|+|++++|+|||+|+++.+.+++ +++|+|.+..  +.+.+.+..+    +..+..... 
T Consensus         7 aiIpar~~S~R~-p-----~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~--~~i~~i~~~~----~~~~~~~~~~   74 (225)
T d1eyra_           7 AVILARQNSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKNF----GVEVVLRPAE   74 (225)
T ss_dssp             EEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESC--HHHHHHHHHT----TCEEEECCHH
T ss_pred             EEEccCCCCcCC-C-----CccccccCCeEHHHHHHHHHHHcCCCceEEEeecc--chhhhhhhhh----cceeeeeccc
Confidence            899999988998 5     599999999999999999999998 6888776654  5566666654    445533332 


Q ss_pred             --CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCe
Q 018060           81 --TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGK  156 (361)
Q Consensus        81 --~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~  156 (361)
                        ....+..+.+..+.+.+.. ..+.++.+++|. +. ..+++++++.+.+.+.+..+.+........+..+..+.  +.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~  151 (225)
T d1eyra_          75 LASDTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINN--GE  151 (225)
T ss_dssp             HHSTTCCHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECSS--SC
T ss_pred             cccccccchhhcccccccccc-ccceEEEeeccccccccccccccceeeccccccccceeeccccccccccccccc--cc
Confidence              1222344556666666543 344889999999 33 34589999888777766666665554444444444332  44


Q ss_pred             EeeeeecCC-----C--CCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecc-eEEEcCCHHHHHH
Q 018060          157 VEKFVEKPK-----L--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYIT  228 (361)
Q Consensus       157 v~~~~ek~~-----~--~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~-~~~~i~t~~dy~~  228 (361)
                      ...+.....     +  ......+.++|+++.+.+......             ..+....+.++. ..+||+|++||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~~~~~-------------~~~~~~~~~i~~~~~~dIdt~eDl~~  218 (225)
T d1eyra_         152 YAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNCF-------------FIAPTKLYIMSHQDSIDIDTELDLQQ  218 (225)
T ss_dssp             EEESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHHHTSS-------------CCSSCEEEECCTTTTCCCCSHHHHHH
T ss_pred             ccccccccccccccccCcceeeecceeEEeeHHHHHHcCCc-------------cCCCeEEEEcCccceECCCCHHHHHH
Confidence            443322211     0  111246788999999977553110             022344444432 3468999999998


Q ss_pred             HHHH
Q 018060          229 GLRL  232 (361)
Q Consensus       229 a~~~  232 (361)
                      +.+.
T Consensus       219 ae~i  222 (225)
T d1eyra_         219 AENI  222 (225)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8654

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.9e-12  Score=104.03  Aligned_cols=89  Identities=17%  Similarity=0.268  Sum_probs=64.5

Q ss_pred             cceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCcEEcCceEEC
Q 018060          253 GNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMTILG  328 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig  328 (361)
                      .++.||+++.|+.+|+|.+  ...||++|.|+++|.|. ++++++.+...+++.+.. .+||++++||.+|.|.+|+.||
T Consensus        71 ~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG  150 (182)
T d1ocxa_          71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIG  150 (182)
T ss_dssp             TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEEC
T ss_pred             cceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEEC
Confidence            5566666666666666633  34677777777777776 355666666666666665 5788899999999988888888


Q ss_pred             CCeEECCceEEcC
Q 018060          329 EDVHVCDEIYSNG  341 (361)
Q Consensus       329 ~~~~v~~~~~i~~  341 (361)
                      ++++||+++++..
T Consensus       151 ~~~vIgagsvV~k  163 (182)
T d1ocxa_         151 DNVVVASGAVVTK  163 (182)
T ss_dssp             TTCEECTTCEECS
T ss_pred             CCCEECCCCEEcc
Confidence            8888888888854

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=7.4e-12  Score=100.25  Aligned_cols=105  Identities=14%  Similarity=0.183  Sum_probs=61.4

Q ss_pred             CCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEeccEEcCCCEECCC
Q 018060          247 TGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHSTVGQW  318 (361)
Q Consensus       247 ~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~  318 (361)
                      +++.|.+++.|++++.|+++|+|++   ...+++++.++.++.+.     ...++.++.+........+.||++++||.+
T Consensus        21 ~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~  100 (173)
T d1v3wa_          21 ENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGIS  100 (173)
T ss_dssp             TTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTT
T ss_pred             CCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeecCCcccccce
Confidence            3333333444444444444444431   22344445555544443     123444455555555556788999999999


Q ss_pred             cEEcCceEECCCeEECCceEEcC-cEEccCceee
Q 018060          319 ARVENMTILGEDVHVCDEIYSNG-GVVLPHKEIK  351 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v~  351 (361)
                      +.|.++++||++++|++++++.+ ..+.|.+.+.
T Consensus       101 ~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~  134 (173)
T d1v3wa_         101 SVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVL  134 (173)
T ss_dssp             CEECTTCEECSSEEECTTCEECTTCEECTTEEEE
T ss_pred             eeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEc
Confidence            99998899999999999998865 3444444443

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=3e-12  Score=102.83  Aligned_cols=105  Identities=12%  Similarity=0.132  Sum_probs=69.8

Q ss_pred             cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEecc-------EEcCCCEECCCcEE
Q 018060          249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS-------IIGWHSTVGQWARV  321 (361)
Q Consensus       249 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~-------~i~~~~~ig~~~~i  321 (361)
                      .+|.++.++.    +|.++.||++++|+.+|+|.+++.|   .||++|.|++++.|...       ....++.++..++|
T Consensus        59 ~~i~~p~~~~----~G~ni~IG~~~~I~~~~~I~d~~~I---~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~I  131 (182)
T d1ocxa_          59 AYIEPTFRCD----YGYNIFLGNNFFANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTI  131 (182)
T ss_dssp             EEECSCEEES----SSTTEEECSSEEECSSEEEECSSCE---EECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEE
T ss_pred             eEEECCEEEE----eccceeECCccEECCCcEEecCCeE---EECCCeEECcCceEeecccccceeeeeccceEcceeEE
Confidence            3455544433    4566666666666666666554433   46777777777776643       24555666666677


Q ss_pred             cCceEECCCeEECCceEE-cCcEEccCceeecccCCCccc
Q 018060          322 ENMTILGEDVHVCDEIYS-NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       322 ~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++++.||.++.|.+++.| .++.|++++.|.+++|+++++
T Consensus       132 g~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kdvp~~~i~  171 (182)
T d1ocxa_         132 GNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVV  171 (182)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEE
T ss_pred             CceEeeCceeeccCcEEECCCCEECCCCEEccCCCCCeEE
Confidence            777777777777777777 477888899999999999875

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.32  E-value=3.2e-12  Score=97.95  Aligned_cols=86  Identities=20%  Similarity=0.330  Sum_probs=61.8

Q ss_pred             ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccC-------------------cEECCCCEEeccEEcCCCE
Q 018060          254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG-------------------VRIKKHACISSSIIGWHST  314 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~i~~~~~  314 (361)
                      ++.|++++.|. ++.+ .+|+||++|.|++++.|.+++++++                   +.||++|+|.+++|+++|.
T Consensus        14 ~s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~   91 (135)
T d1yp2a1          14 DSVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNAR   91 (135)
T ss_dssp             EEEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCE
T ss_pred             eCEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCE
Confidence            45666666664 3444 4677788888888888776665544                   6888899998889999999


Q ss_pred             ECCCcEEcCceEECCCeEECCceEEcC
Q 018060          315 VGQWARVENMTILGEDVHVCDEIYSNG  341 (361)
Q Consensus       315 ig~~~~i~~~~~ig~~~~v~~~~~i~~  341 (361)
                      ||+++++.+++.+.+.+.+++++.+.+
T Consensus        92 IG~g~~i~~~~~~~~~~~~~~~~~i~~  118 (135)
T d1yp2a1          92 IGDNVKIINKDNVQEAARETDGYFIKS  118 (135)
T ss_dssp             ECTTCEECCSSCCSCEEEGGGTEEEET
T ss_pred             ECCCcEECCCcccccceeeCCCEEECC
Confidence            998888887776666666665555543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.31  E-value=1.8e-11  Score=100.07  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=23.8

Q ss_pred             eEECCCeEECCceE------E-cCcEEccCceeecccCCCccc
Q 018060          325 TILGEDVHVCDEIY------S-NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       325 ~~ig~~~~v~~~~~------i-~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      ++||+++.+|.++.      | .++.+++++.|.+++|+++++
T Consensus       143 ~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkdvp~~~i~  185 (196)
T d1g97a1         143 TVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIA  185 (196)
T ss_dssp             EEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEE
T ss_pred             eEEecCCEEeeeeEEcCCcEECCCCEECCCCEECcCcCCCCEE
Confidence            34455555554444      4 367778888888899888775

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.31  E-value=2.9e-12  Score=98.12  Aligned_cols=61  Identities=10%  Similarity=0.043  Sum_probs=36.3

Q ss_pred             CCEECCCcEEeceEEccCcEECCCCEEec-cEEcCCCEECCCcEEcCc-eEECCCeEECCceE
Q 018060          278 GCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENM-TILGEDVHVCDEIY  338 (361)
Q Consensus       278 ~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~-~~ig~~~~v~~~~~  338 (361)
                      ++.||++|+|.+++|+++|.||+++++.+ +.+.+.+.+++++.+.++ ++||++++|++|++
T Consensus        72 ~v~Ig~~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          72 PIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             CSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred             CCEECcceEeccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcC
Confidence            35666666666666666666666666655 345555555555555554 44555555555554

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=9.2e-12  Score=101.43  Aligned_cols=71  Identities=13%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             eEEccCcEECCCCEEecc-E------EcCCCEECCCcEEcCceEECCCeEECCceEE-cCcEEccCceeecccCCCccc
Q 018060          290 CTVMRGVRIKKHACISSS-I------IGWHSTVGQWARVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       290 ~~i~~~~~i~~~~~i~~~-~------i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +.||++|.|+++++|... .      ...+..++..++|++++.||.++.|.+++.| .++.|++++.|.+++|+++++
T Consensus        95 i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~~~iv  173 (200)
T d1krra_          95 VTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVA  173 (200)
T ss_dssp             EEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             cEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCCCcEEeCCCEEeeEcCCCcEE
Confidence            356667777777766542 1      1222233333444444444444444445544 245566777777778877765

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=2.8e-11  Score=96.85  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=60.2

Q ss_pred             cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEecc-----EEc-----------CC
Q 018060          253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISSS-----IIG-----------WH  312 (361)
Q Consensus       253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~-----~i~-----------~~  312 (361)
                      .++.|+++++|+++++|.+++.||++|.|+++|.|.    +..+++++.+++++.+..+     .++           ..
T Consensus         9 ~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
T d1v3wa_           9 KKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG   88 (173)
T ss_dssp             BCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES
T ss_pred             CCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeee
Confidence            344566666666666666666777777777777774    4568888888888877532     222           33


Q ss_pred             CEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec--ccCCCccc
Q 018060          313 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS--SILKPEIV  360 (361)
Q Consensus       313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~--~~~~~~~~  360 (361)
                      +.||+++.|+.+++|+.+++||++++     +++++.|..  .+|+++++
T Consensus        89 ~~Ig~~~~ig~~~~i~~gv~Ig~~~v-----IgagsvV~~~~~i~~~~iv  133 (173)
T d1v3wa_          89 AKVGNYVIIGISSVILDGAKIGDHVI-----IGAGAVVPPNKEIPDYSLV  133 (173)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEE-----ECTTCEECTTCEECTTEEE
T ss_pred             eecCCcccccceeeecCCEEEcceeE-----EcCCcEEeCCeEeCCCCEE
Confidence            44444444444444444444444444     445555542  56776664

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=8.4e-11  Score=98.29  Aligned_cols=204  Identities=14%  Similarity=0.172  Sum_probs=121.8

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      -|||+|.|.++|| |     .|.|++++|+|||+|+++++.+++ +++|+|.+..  +.+.+...++    ++.+.....
T Consensus         5 ~aiIpaR~~S~Rl-p-----~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~--~~i~~~~~~~----~~~~~~~~~   72 (228)
T d1qwja_           5 AALVLARGGSKGI-P-----LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH--DEIENVAKQF----GAQVHRRSS   72 (228)
T ss_dssp             EEEEECCSCCSSS-S-----CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC--HHHHHHHHHT----TCEEEECCG
T ss_pred             EEEeccCCCCCCC-C-----CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecch--hhhhhhhhhc----Ccccccccc
Confidence            4999999999998 4     599999999999999999999887 7888887654  4566565554    555554433


Q ss_pred             CCCC---CCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCC
Q 018060           81 TEPL---GTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG  155 (361)
Q Consensus        81 ~~~~---g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~  155 (361)
                      ....   ...+.+..+....  ...+.++++.+|.  +...+++++++.+...+.+..+.+...... .+........ +
T Consensus        73 ~~~~~~~~~~~~i~~~~~~~--~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~-~  148 (228)
T d1qwja_          73 ETSKDSSTSLDAIVEFLNYH--NEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQF-RWSEIQKGVR-E  148 (228)
T ss_dssp             GGSSTTCCHHHHHHHHHTTC--TTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCC-EECCCCSSTT-C
T ss_pred             ccccccchhhhhhhhccccc--cccceeeeecccccccCchhhhhhhhhhhccCccccccccccccc-cchhhhhhcc-c
Confidence            2222   2344444444444  2234788888998  334458999999988877766655443221 1111110000 0


Q ss_pred             eEeeee----ecCC-C-CC-CCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecc-eEEEcCCHHHHH
Q 018060          156 KVEKFV----EKPK-L-FV-GNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYI  227 (361)
Q Consensus       156 ~v~~~~----ek~~-~-~~-~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~-~~~~i~t~~dy~  227 (361)
                      ......    ..+. + .. .-..+.++|+++..++..-  ..            ...+...+.++. ..+||+|++||.
T Consensus       149 ~~~~~~~~~~~~~~~qd~~~~y~~ng~~~~~k~~~~~~~--~~------------~~~k~~~~~i~~~~~idIDt~eD~~  214 (228)
T d1qwja_         149 VTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLIEMG--YL------------QGGKMAYYEMRAEHSVDIDVDIDWP  214 (228)
T ss_dssp             CCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHHHTT--CS------------SCSSEEEEECCGGGCCCHHHHCSHH
T ss_pred             cccchhhhhhhccccccccceeeeeeEEEEEeHHHHhhC--Cc------------CCCCEEEEEcCccceECCCCHHHHH
Confidence            000000    0011 1 11 1134667888887766531  00            123455565543 456899999998


Q ss_pred             HHHHHHHH
Q 018060          228 TGLRLYLD  235 (361)
Q Consensus       228 ~a~~~~l~  235 (361)
                      .|.+.++.
T Consensus       215 ~Ae~~l~k  222 (228)
T d1qwja_         215 IAEQRVLR  222 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88765543

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=99.23  E-value=6.4e-12  Score=103.00  Aligned_cols=121  Identities=20%  Similarity=0.266  Sum_probs=82.9

Q ss_pred             eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (361)
Q Consensus         2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (361)
                      .+||||||.|+||+.   ..||+|++++|+|||+|+++.+.+.. ++.|+|+++. .+    +++++.+  ...+.  ..
T Consensus         3 s~IILAaG~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~-~~----~~~~~~~--~~~~v--~G   70 (205)
T d1w55a1           3 SLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN-IT----YMKKFTK--NYEFI--EG   70 (205)
T ss_dssp             EEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESC-HH----HHHTTCS--SSEEE--EC
T ss_pred             EEEEeCCccCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhcccccccccccc-cc----ccccccc--ccccc--cc
Confidence            589999999999986   78999999999999999999998875 6777776553 22    2333221  23332  21


Q ss_pred             CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHHHHcCCceEEEEEEccC
Q 018060           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHGGEASIMVTKVDE  141 (361)
Q Consensus        81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~  141 (361)
                        +.....+++.+++.+.   .+.+++..||. +... .++.+++.+.+.  .+.+.+.+..+
T Consensus        71 --g~~r~~Sv~~gl~~~~---~~~VlIhd~~rP~i~~~~i~~li~~~~~~--~~~i~~~~~~d  126 (205)
T d1w55a1          71 --GDTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVAD  126 (205)
T ss_dssp             --CSSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCCS
T ss_pred             --ccchhhhhhhhhhhhh---hcceeeeccCcccCcHHHHHHHHhhhhcc--ccccccccccc
Confidence              1123577888887772   34889999999 4443 478888776544  45555555433

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.16  E-value=7.3e-12  Score=102.78  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=25.2

Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~  340 (361)
                      ++||++|+||.+|.|.+++.||++++|++++++.
T Consensus       114 v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~  147 (203)
T d1mr7a_         114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV  147 (203)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCEEEECCceeEEeEEEEcCCCEEecCeEEe
Confidence            4677777777777777777777777777777764

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.14  E-value=3.5e-10  Score=93.47  Aligned_cols=92  Identities=21%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCC--------EECC
Q 018060          248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHS--------TVGQ  317 (361)
Q Consensus       248 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~--------~ig~  317 (361)
                      +..+.|++.+-.+++|++++++ .+++|.-++.||++|.|. .+.|+++|.||+||+|+. +.||...        +|++
T Consensus       102 g~RvvPga~VR~GayI~~~vVl-mps~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed  180 (274)
T d3tdta_         102 GFRVVPPATVRQGAFIARNTVL-MPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED  180 (274)
T ss_dssp             CCEECTTCEEBTTCEECTTCEE-CSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECT
T ss_pred             CEEeCCCceeccCcEECCCcEE-eeeEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEec
Confidence            4455555555555555555555 345555555555555555 455555555555555544 3454432        3555


Q ss_pred             CcEEcCceEECCCeEECCceEEc
Q 018060          318 WARVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       318 ~~~i~~~~~ig~~~~v~~~~~i~  340 (361)
                      +|.|+.+|.|-+++.|+.++++.
T Consensus       181 ~~~IGa~s~v~egv~Vg~~avi~  203 (274)
T d3tdta_         181 NCFIGARSEVVEGVIVEEGSVIS  203 (274)
T ss_dssp             TCEECTTCEECTTCEECTTCEEC
T ss_pred             CcEeccCceEecCEEecCceEec
Confidence            55555555555555555555553

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.07  E-value=3e-10  Score=94.98  Aligned_cols=95  Identities=18%  Similarity=0.291  Sum_probs=56.0

Q ss_pred             ceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEeceEEccCcEECCCCEE---eccEEcCCCEECCCcEEcCceEEC
Q 018060          254 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI---SSSIIGWHSTVGQWARVENMTILG  328 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i---~~~~i~~~~~ig~~~~i~~~~~ig  328 (361)
                      ++.|++++.||+++.|.  .+.+||+++.||++|.|     .++++++.....   +..+||++++||.+++|.+++.||
T Consensus       137 g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i-----~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG  211 (241)
T d1ssqa_         137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSI-----LQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVG  211 (241)
T ss_dssp             SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEEC
T ss_pred             eeccccCCEEccCcccCccceEEEeccceecCCeee-----cccccccccccCCCCCCCccCCCeEECCCCEEcCCcEEC
Confidence            34444444444444442  23444444444444443     333333322211   236899999999999999999999


Q ss_pred             CCeEECCceEEcCcEEccCceeecccC
Q 018060          329 EDVHVCDEIYSNGGVVLPHKEIKSSIL  355 (361)
Q Consensus       329 ~~~~v~~~~~i~~~~i~~~~~v~~~~~  355 (361)
                      ++++||+|+++...  +|..++....|
T Consensus       212 ~~a~IgAgsvV~kd--Vp~~~vv~G~P  236 (241)
T d1ssqa_         212 KYAKIGANSVVLNP--VPEYATAAGVP  236 (241)
T ss_dssp             TTCEECTTCEECSC--BCTTCEEETTT
T ss_pred             CCCEECCCCEECCC--CCCCCEEEecC
Confidence            99999999998653  34444444333

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=6e-10  Score=91.14  Aligned_cols=47  Identities=17%  Similarity=0.136  Sum_probs=35.5

Q ss_pred             cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeeccc
Q 018060          307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI  354 (361)
Q Consensus       307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~  354 (361)
                      +.|+++++||.++.|.+++.||+++.|++++.+... +-|++.+....
T Consensus       144 ~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kd-Vp~~si~vg~~  190 (201)
T d2oi6a1         144 TIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN-VGENALAISRV  190 (201)
T ss_dssp             EEECTTCEECTTCEEESSEEECTTCEECTTCEECSC-BCTTCEECCCC
T ss_pred             cEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeee-cCCCCEEEecc
Confidence            468888999999999889999999999999998542 34444434433

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.02  E-value=7e-11  Score=96.77  Aligned_cols=46  Identities=15%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             ECCCcEEcCceEECCCeEECCceEE-cCcEEccCceeecccCCCccc
Q 018060          315 VGQWARVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKSSILKPEIV  360 (361)
Q Consensus       315 ig~~~~i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~~~~~~~~  360 (361)
                      +...++|+++|.||.++.|.+++.+ .++.+++++.|.+++|+++++
T Consensus       110 i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~  156 (203)
T d1mr7a_         110 IKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLA  156 (203)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             CccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEE
Confidence            3344556666666666666666666 367778888888888888765

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.02  E-value=9.4e-09  Score=91.07  Aligned_cols=180  Identities=17%  Similarity=0.223  Sum_probs=125.6

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeC-CcchHHHHHHHHHH----cC-CCEEEEEccc-ChHHHHHHHHHhhhccCcEE
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKA----VG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~-g~pli~~~l~~l~~----~g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i   75 (361)
                      +|+||||.|+||+.   ..||.++|++ |+++++..++++.+    .| --.+++.++. .++.++++++++. .++.++
T Consensus        77 vv~LaGG~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~-~fg~~i  152 (378)
T d2icya2          77 VLKLNGGLGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYT-NSNVDI  152 (378)
T ss_dssp             EEEEECCBSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGT-TSSSCE
T ss_pred             EEEecCCcccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhc-cCCCce
Confidence            68999999999987   8999999996 89999999998875    23 3357777777 5688999999853 345555


Q ss_pred             EEecC------------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018060           76 ICSQE------------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK  126 (361)
Q Consensus        76 ~~~~~------------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~  126 (361)
                      .+..|                        ..|.|.++......     +.+...+-+++++...|.+....--.++..|.
T Consensus       153 ~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~~~  232 (378)
T d2icya2         153 HTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLI  232 (378)
T ss_dssp             EEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHHH
T ss_pred             EEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHHHHH
Confidence            44332                        11457776665532     33444455599999999965433355788888


Q ss_pred             HcCCceEEEEEEccCCC-CceeEE-EcCCCCeEeeeeecCCC--------CCCCeEEEEEEEeCHhhHhhc
Q 018060          127 AHGGEASIMVTKVDEPS-KYGVVV-MEESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI  187 (361)
Q Consensus       127 ~~~~~~~i~~~~~~~~~-~~~~v~-~~~~~~~v~~~~ek~~~--------~~~~~~~~Giyi~~~~~l~~l  187 (361)
                      ++++++++-+++...+. .-|.+. .+.. -++.++.|.|..        ..-.+.+++.++|+-.+++.+
T Consensus       233 ~~~~~~~~kvv~Kt~~dek~G~l~~~dg~-~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l~~~  302 (378)
T d2icya2         233 QNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKL  302 (378)
T ss_dssp             HHTCSEEEEEEECCTTCCSSCEEEEETTE-EEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHH
T ss_pred             hcCCcceeEEEecCCCCCceeEEEEECCc-eeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHHHHH
Confidence            88998888877764443 334333 3332 467777776652        122357999999999988766

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.87  E-value=6.9e-09  Score=86.56  Aligned_cols=95  Identities=20%  Similarity=0.265  Sum_probs=61.4

Q ss_pred             cCCcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCCEEeccEEcCCCE
Q 018060          246 ATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISSSIIGWHST  314 (361)
Q Consensus       246 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~~~i~~~~~  314 (361)
                      ..+..|++++.|+++.+|..  +.+|++++.||++|.|..++.++.         ..|+++|.||.|+.|     ..+.+
T Consensus       135 ~~g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~I-----lg~v~  209 (241)
T d1ssqa_         135 AFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKI-----LGNIE  209 (241)
T ss_dssp             HHSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEE-----ESSCE
T ss_pred             heeeccccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEE-----cCCcE
Confidence            35566677777777777754  678888888888888888888752         345555555555544     44556


Q ss_pred             ECCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060          315 VGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  350 (361)
Q Consensus       315 ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v  350 (361)
                      ||++++|+.+++|-++  |.+++++.|   .|.+.|
T Consensus       210 IG~~a~IgAgsvV~kd--Vp~~~vv~G---~PAr~I  240 (241)
T d1ssqa_         210 VGKYAKIGANSVVLNP--VPEYATAAG---VPARIV  240 (241)
T ss_dssp             ECTTCEECTTCEECSC--BCTTCEEET---TTTEEC
T ss_pred             ECCCCEECCCCEECCC--CCCCCEEEe---cCcEEe
Confidence            6666666666666666  467777766   455443

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.86  E-value=1.7e-09  Score=88.39  Aligned_cols=92  Identities=12%  Similarity=0.028  Sum_probs=58.6

Q ss_pred             cEEecceEEcCCCEECCCc----------------EECCCcEECCCCEECCCcEEe----ceEEccCcEECCCC------
Q 018060          249 ANIVGNVLVHESAQIGEGC----------------LIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHA------  302 (361)
Q Consensus       249 ~~i~~~~~i~~~~~i~~~~----------------~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~------  302 (361)
                      +.+.+++.||+++.++...                .+.+++.||++|.|+++|.|.    .+.+.+++.+.+.+      
T Consensus        15 ~I~~pNi~IGd~t~i~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~   94 (208)
T d1xata_          15 QVSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEP   94 (208)
T ss_dssp             TCCCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCG
T ss_pred             ccCCCCcEECCCeeECCcccCCccccceEEecCCCCCcCeeEECCCCEECCCCEEeccCCCcccccceeecccccccccc
Confidence            4456666666666654321                122456777777777777763    22333333332211      


Q ss_pred             ----------EEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060          303 ----------CISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  340 (361)
Q Consensus       303 ----------~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~  340 (361)
                                ..++++||++|+||.+|.|.+++.||++++||+++++.
T Consensus        95 ~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVt  142 (208)
T d1xata_          95 AFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT  142 (208)
T ss_dssp             GGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cccccccCccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEe
Confidence                      12236888899999999998889999999888888885

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.78  E-value=4.5e-08  Score=85.62  Aligned_cols=53  Identities=19%  Similarity=0.292  Sum_probs=26.1

Q ss_pred             ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec
Q 018060          254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS  306 (361)
Q Consensus       254 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~  306 (361)
                      ++++.+++.|++++.|.+++.|+.+++|++++.|+++.|.+++.|+++++|.+
T Consensus        63 nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~  115 (320)
T d2f9ca1          63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQS  115 (320)
T ss_dssp             TCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEES
T ss_pred             CcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecC
Confidence            44444455555555555555555555555555444444444444444444443

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.71  E-value=6.4e-08  Score=84.64  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=43.2

Q ss_pred             CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEE
Q 018060          247 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  321 (361)
Q Consensus       247 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i  321 (361)
                      +.+.+.+++.|+++++|+++|.|.+++.||++++|+ ++.|. ++.|+++|.|++++++.++.+..++.|.+++.+
T Consensus        62 ~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i  136 (320)
T d2f9ca1          62 ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEI  136 (320)
T ss_dssp             TTCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEE
T ss_pred             CCcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEE
Confidence            456666666666666666666666666666666665 44554 566666666666555555544444444444433

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.60  E-value=4.3e-08  Score=79.87  Aligned_cols=41  Identities=7%  Similarity=0.161  Sum_probs=19.2

Q ss_pred             cEEcCceEECCCeEECCceEE-cCcEEccCceeecccCCCcc
Q 018060          319 ARVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKSSILKPEI  359 (361)
Q Consensus       319 ~~i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~~~~~~~  359 (361)
                      ++|+++|.||.++.|.+++.| .++.|++++.|.+++|++++
T Consensus       109 v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si  150 (208)
T d1xata_         109 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAI  150 (208)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred             EEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcE
Confidence            334444444444444444444 24445555555555555554

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=98.28  E-value=1.6e-05  Score=72.46  Aligned_cols=181  Identities=21%  Similarity=0.257  Sum_probs=116.7

Q ss_pred             EEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc----------C-CCEEEEEccc-ChHHHHHHHHHh
Q 018060            3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV----------G-VTEVVLAINY-QPEVMLNFLKEF   67 (361)
Q Consensus         3 avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~----------g-i~~i~vv~~~-~~~~~~~~l~~~   67 (361)
                      +|+||||.|+||+-   ..||.++|++   |+++++..++++.+.          + .-.++++++. .++.++++|++.
T Consensus       105 vvllaGG~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~l~~~  181 (501)
T d1jv1a_         105 VLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKH  181 (501)
T ss_dssp             EEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHHT
T ss_pred             EEEECCCccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHHHHhc
Confidence            68899999999987   8899999984   899999998877552          2 2356777777 568899999973


Q ss_pred             hhccCcE---EEEecC---------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccCH
Q 018060           68 EAKLGIK---IICSQE---------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYPF  118 (361)
Q Consensus        68 ~~~~~~~---i~~~~~---------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~l  118 (361)
                       ..+|.+   +.+..|                     ..|.|.++......     +.+...+-+++.+...|.+.....
T Consensus       182 -~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~  260 (501)
T d1jv1a_         182 -KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVA  260 (501)
T ss_dssp             -GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTT
T ss_pred             -cccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcccccc
Confidence             222321   332222                     12456665554443     233333444899999998543322


Q ss_pred             -HHHHHHHHHcCCceEEEEEEccCCC-CceeEEEcCCCCeEeeeeecCC----------CCCCCeEEEEEEEeCHhhHhh
Q 018060          119 -AEMIEFHKAHGGEASIMVTKVDEPS-KYGVVVMEESTGKVEKFVEKPK----------LFVGNKINAGIYLLNPAVLDR  186 (361)
Q Consensus       119 -~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~v~~~~~~~~v~~~~ek~~----------~~~~~~~~~Giyi~~~~~l~~  186 (361)
                       -.++..+..++.++.+-+.+...+. .-|.+...+..-++.++.+-|.          ...-...++..++|+-++++.
T Consensus       261 Dp~~lG~~~~~~~~~~~kvv~k~~~~e~~G~l~~~dg~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~~fsl~fl~~  340 (501)
T d1jv1a_         261 DPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRD  340 (501)
T ss_dssp             CHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHHHH
T ss_pred             CHHHHHHHHhcccceeEEEEEcCCCCcccceEEEECCeEEEEEeccCCHHHHhhccCCCcccccccceeheeeEHHHHHH
Confidence             4478888888888888877765443 4455543321124455544332          112335788999999988876


Q ss_pred             c
Q 018060          187 I  187 (361)
Q Consensus       187 l  187 (361)
                      +
T Consensus       341 ~  341 (501)
T d1jv1a_         341 V  341 (501)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MM2497-like
domain: Hypothetical protein MM2497
species: Methanosarcina mazei [TaxId: 2209]

Probab=96.31  E-value=0.004  Score=49.62  Aligned_cols=103  Identities=20%  Similarity=0.238  Sum_probs=61.4

Q ss_pred             CeEEEEec-CCC-cccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEe
Q 018060            1 MKALILVG-GFG-TRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS   78 (361)
Q Consensus         1 m~avIla~-G~g-~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~   78 (361)
                      |+|||+.- ++. +||.|.-.  ++.-..+ -+-|+.++++.+.++++..++++++....      ..  ......+.. 
T Consensus         1 m~~iiPiK~~~aKTRL~~~L~--~~~r~~L-~~~ml~~tl~~l~~~~~~~v~~vs~~~~~------~~--~~~~~~~~~-   68 (208)
T d2i5ea1           1 MRAVIPYKKAGAKSRLSPVLS--LQEREEF-VELMLNQVISSLKGAGIEQVDILSPSVYG------LE--EMTEARVLL-   68 (208)
T ss_dssp             CEEEEECCCTTTTGGGTTTSC--HHHHHHH-HHHHHHHHHHHHHHTTCSEEEEEESSCTT------CS--SCCSSEEEE-
T ss_pred             CeEEEecCCCCCccCcCcccC--HHHHHHH-HHHHHHHHHHHHHhCCCcEEEEEcCcHHH------HH--HhhcCCccc-
Confidence            89999973 333 66766311  0100111 24599999999999999999888876321      01  111223321 


Q ss_pred             cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHH
Q 018060           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMI  122 (361)
Q Consensus        79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~  122 (361)
                       +  ..|...++..+.+.-    .+.++++.+|+  +...++.+++
T Consensus        69 -~--~~~L~~al~~a~~~~----~~~vliig~DlP~L~~~~l~~a~  107 (208)
T d2i5ea1          69 -D--EKDLNEALNRYLKEA----EEPVLIVMADLPLLSPEHIKEIS  107 (208)
T ss_dssp             -C--CSCHHHHHHHHHHHC----CSCEEEECSCCTTCCHHHHHHHT
T ss_pred             -C--CCCHHHHHHHHHhcC----CCCEEEecCCcCcCCHHHHHHHH
Confidence             1  235667777665532    23899999999  6555666654

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.32  E-value=1.8  Score=35.71  Aligned_cols=104  Identities=12%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             ceeCCcc--hHHHHHHHHHHcCC----CEEEEEcccC-hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060           26 VEFANKP--MILHQIEALKAVGV----TEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (361)
Q Consensus        26 lpl~g~p--li~~~l~~l~~~gi----~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~   98 (361)
                      +|.-|..  .|.++|+++.+.-.    .+|+||=+.. .+..+..++++.......+.+...+...|.+.+.-.+.... 
T Consensus        28 Ip~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a-  106 (328)
T d1xhba2          28 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVS-  106 (328)
T ss_dssp             EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHC-
T ss_pred             EeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhh-
Confidence            4444753  68899998876532    2666654432 22233333333222233444444455567777777777766 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCCce
Q 018060           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEA  132 (361)
Q Consensus        99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~  132 (361)
                       .+ |.++++.+|.+...+ ++.+++.+.+.+..+
T Consensus       107 -~g-d~i~flD~D~~~~p~~l~~l~~~~~~~~~~~  139 (328)
T d1xhba2         107 -RG-QVITFLDAHCECTAGWLEPLLARIKHDRRTV  139 (328)
T ss_dssp             -CS-SEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred             -hc-ceeeecCcccccChhHHHHHHHHHhcCCCeE
Confidence             33 389999999977666 888988887766543

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.18  E-value=0.13  Score=40.64  Aligned_cols=101  Identities=10%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             ceeCCcc-hHHHHHHHHHHcCC-CEEEEEcccChH-HHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060           26 VEFANKP-MILHQIEALKAVGV-TEVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (361)
Q Consensus        26 lpl~g~p-li~~~l~~l~~~gi-~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~  102 (361)
                      +|.-|+| .|.++|+++.+... .+++||.+...+ ........+..+ ...+.+..+  ..|.+.+.-.+.+..   ..
T Consensus         9 i~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~-~~~~~~~~~--~~g~~~a~n~~~~~a---~g   82 (265)
T d1omza_           9 MQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPH-PIPVIFKPQ--TANKMRNRLQVFPEV---ET   82 (265)
T ss_dssp             EEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCC-SSCEEEEEC--SSCCGGGGGSCCTTC---CS
T ss_pred             EEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhccc-ceEEEEecC--CCCchhhhhhhHHhC---Cc
Confidence            4454564 99999999987753 455555544222 222222222222 222333332  346677665555555   23


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHHcCCce
Q 018060          103 EPFFVLNSDVISEYP-FAEMIEFHKAHGGEA  132 (361)
Q Consensus       103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~  132 (361)
                      |.++++.+|.+...+ ++.+++.+.+.+...
T Consensus        83 e~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~  113 (265)
T d1omza_          83 NAVLMVDDDTLISAQDLVFAFSIWQQFPDQI  113 (265)
T ss_dssp             SEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred             CEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence            489999999977766 888888887665443

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.61  E-value=2.7  Score=33.00  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=65.9

Q ss_pred             CcchHHHHHHHHHHcCCC--EEEEEcccChHHHHHHHHHhhhccCcEEEEecC------CCCCCCchHHHHHHhhccCCC
Q 018060           30 NKPMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE------TEPLGTAGPLALARDKLIDDT  101 (361)
Q Consensus        30 g~pli~~~l~~l~~~gi~--~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~------~~~~g~~~al~~~~~~~~~~~  101 (361)
                      +...|..+|+++...-..  +++|+-+...+...+.++++.....+.+.....      ....|.+.++-.+.+..  .+
T Consensus        12 ~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a--~g   89 (255)
T d1qg8a_          12 KSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMA--EG   89 (255)
T ss_dssp             CTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHC--CC
T ss_pred             CHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhccccccccccc--cc
Confidence            345899999998876543  566665556677888888876554555432211      23445666777777776  33


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHHHHcCC
Q 018060          102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGG  130 (361)
Q Consensus       102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~  130 (361)
                       +.++++.+|.+...+ ++.+++.+.+++.
T Consensus        90 -~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~  118 (255)
T d1qg8a_          90 -EYITYATDDNIYMPDRLLKMVRELDTHPE  118 (255)
T ss_dssp             -SEEEEEETTEEECTTHHHHHHHHHHHCTT
T ss_pred             -ccccccccccccccchHHHHHHHHHhCCC
Confidence             389999999977766 8888888776643