Citrus Sinensis ID: 018062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVIL
ccccccHHHHHHHHHcccccEEccEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccEEEccccccccccccccccEEEEccccccHHHHHHHHcccccEEEccccccHHHHHHHHHHHHcccEEEEEcccccccEEEEccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEEEEEccccHHHHHHHHHHccccEEEEEEc
cccHHHHHHHHHHHHcccEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHcccEEEEcccccEEccEcccccEEEEccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEEEEccccccEEEEccccccEEEEEcHHHHHHHHHHcccccEEcccccccHHHHHHccHccccccccccHHHEEEEEccccccccHHHHHHHHHHHccHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHccccEEEEccHHHccccccEEHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcc
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITneiihnptvNKRLEEMavqnipveegkkqfdvvnkgdvvvLPAFGAAVEEMVTLNnknvqivdttcpwvSKVWTSVekhkkgdytsiihgkysheetvataSFAGKYIIVKNMKEAEYVCDYIlggelngssstKEAFLEKFKKAVskgfdpdvdlVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVggwnssntsHLQEIaedrgipsywidsekrigpgnkiAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVIL
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPveegkkqfdvvNKGDVVVLPAFGAAVEEMVTLnnknvqivdttcPWVSKVWTsvekhkkgdytsiihgkysheeTVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAvskgfdpdvdlVKVGianqttmlkgeteeIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQeiaedrgipsywiDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVIL
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVIL
********IIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNG*****EAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILV*******************GIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVI*
****YTS*************TWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVIL
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVIL
**QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVIL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINYLRIVIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q6AVG6459 4-hydroxy-3-methylbut-2-e yes no 0.911 0.716 0.860 1e-170
Q94B35466 4-hydroxy-3-methylbut-2-e yes no 0.911 0.706 0.823 1e-166
B8HWD3405 4-hydroxy-3-methylbut-2-e yes no 0.889 0.792 0.646 1e-129
Q5N249398 4-hydroxy-3-methylbut-2-e yes no 0.897 0.814 0.615 1e-128
Q31S64398 4-hydroxy-3-methylbut-2-e yes no 0.897 0.814 0.615 1e-128
B0C4N8415 4-hydroxy-3-methylbut-2-e yes no 0.914 0.795 0.624 1e-127
A5GWG3406 4-hydroxy-3-methylbut-2-e yes no 0.897 0.798 0.612 1e-126
B0JVA7402 4-hydroxy-3-methylbut-2-e yes no 0.916 0.823 0.628 1e-126
B1WTZ2402 4-hydroxy-3-methylbut-2-e yes no 0.897 0.805 0.669 1e-125
Q8DK29402 4-hydroxy-3-methylbut-2-e yes no 0.897 0.805 0.645 1e-125
>sp|Q6AVG6|ISPH_ORYSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1 Back     alignment and function desciption
 Score =  598 bits (1542), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/329 (86%), Positives = 306/329 (93%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M+QEYTSD+IK LKENG ++TWG V VKLAE+YGFCWGVERAVQIAYEARKQFP+++IW+
Sbjct: 80  MSQEYTSDVIKTLKENGNQHTWGPVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDRIWL 139

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLE+M VQNIPV+ G K FDVV +GDVVVLPAFGAAVEEM TLN K V
Sbjct: 140 TNEIIHNPTVNKRLEDMGVQNIPVDAGIKDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKV 199

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW  VEKHKKGDYTSIIHGKYSHEETVATASFAG YIIVKN+ EA YV
Sbjct: 200 QIVDTTCPWVSKVWNMVEKHKKGDYTSIIHGKYSHEETVATASFAGTYIIVKNIAEASYV 259

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGG+L+GSSSTKE FLEKFK AVS GFDPDVDLVKVGIANQTTMLKGETEEIGKLV
Sbjct: 260 CDYILGGQLDGSSSTKEEFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 319

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           EKTMMR+FGVENVN+HFI+FNTICDATQERQDAMY++V+EKVDLILVVGGWNSSNTSHLQ
Sbjct: 320 EKTMMRRFGVENVNDHFIAFNTICDATQERQDAMYQLVKEKVDLILVVGGWNSSNTSHLQ 379

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKL 329
           EI E  GIPSYWIDSE+RIGPGNKI+YKL
Sbjct: 380 EIGELSGIPSYWIDSEQRIGPGNKISYKL 408
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 7EC: .EC: 1EC: .EC: 2
>sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1 Back     alignment and function description
>sp|B8HWD3|ISPH_CYAP4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q5N249|ISPH_SYNP6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q31S64|ISPH_SYNE7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B0C4N8|ISPH_ACAM1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|A5GWG3|ISPH_SYNR3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B0JVA7|ISPH_MICAN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B1WTZ2|ISPH_CYAA5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q8DK29|ISPH_THEEB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
224105455460 predicted protein [Populus trichocarpa] 0.911 0.715 0.890 1e-176
189017050426 putative chloroplast 4-hydroxy-3-methylb 0.911 0.772 0.887 1e-175
164605002 462 4-hydroxy-3-methylbut-2-enyl diphosphate 0.911 0.712 0.896 1e-175
255556135 466 4-hydroxy-3-methylbut-2-enyl diphosphate 0.911 0.706 0.884 1e-175
405789874371 putative 4-hydroxy-3-methylbut-2-enyl di 0.914 0.889 0.881 1e-175
195928050 462 4-hydroxy-3-methylbut-2-enyl diphosphate 0.911 0.712 0.890 1e-174
356538819 462 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.911 0.712 0.878 1e-174
356545301380 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.911 0.865 0.881 1e-174
255641515380 unknown [Glycine max] 0.911 0.865 0.878 1e-174
405789872371 putative 4-hydroxy-3-methylbut-2-enyl di 0.914 0.889 0.875 1e-173
>gi|224105455|ref|XP_002313816.1| predicted protein [Populus trichocarpa] gi|222850224|gb|EEE87771.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 293/329 (89%), Positives = 319/329 (96%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP++KIWI
Sbjct: 81  MNREYTSDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDKIWI 140

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+N+PVEEGKKQF+VVN GDVV+LPAFGAAV+EM+TL++KNV
Sbjct: 141 TNEIIHNPTVNKRLEEMEVENVPVEEGKKQFEVVNGGDVVILPAFGAAVDEMLTLSSKNV 200

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKGDYTSIIHGKY+HEETVATASFAGKYIIVK+MKEA YV
Sbjct: 201 QIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKDMKEAMYV 260

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGELNGSSST+E FLEKFK AVSKGFDPD DLVK+GIANQTTMLKGETE+IGKLV
Sbjct: 261 CDYILGGELNGSSSTREEFLEKFKNAVSKGFDPDSDLVKLGIANQTTMLKGETEDIGKLV 320

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+ MMRK+GVENVN+HFISFNTICDATQERQDAMYK+VEEK+DL+LVVGGWNSSNTSHLQ
Sbjct: 321 ERIMMRKYGVENVNDHFISFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQ 380

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKL 329
           EIAE  GIPSYWIDSE+RIGPGNKIAYKL
Sbjct: 381 EIAEHHGIPSYWIDSEQRIGPGNKIAYKL 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|189017050|gb|ACD70402.1| putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|164605002|dbj|BAF98297.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255556135|ref|XP_002519102.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] gi|223541765|gb|EEF43313.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|405789874|gb|AFS28680.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, partial [Olea europaea] Back     alignment and taxonomy information
>gi|195928050|gb|ACG55683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|356538819|ref|XP_003537898.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|356545301|ref|XP_003541082.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|255641515|gb|ACU21031.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|405789872|gb|AFS28679.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, partial [Olea europaea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2116164466 HDR "4-hydroxy-3-methylbut-2-e 0.911 0.706 0.823 1.8e-151
TIGR_CMR|NSE_0438303 NSE_0438 "4-hydroxy-3-methylbu 0.337 0.402 0.320 1.4e-18
TIGR_CMR|VC_0685316 VC_0685 "hydroxymethylbutenyl 0.390 0.446 0.267 2.9e-18
TIGR_CMR|CPS_1211309 CPS_1211 "4-hydroxy-3-methylbu 0.155 0.181 0.526 4.4e-18
TIGR_CMR|CJE_0973277 CJE_0973 "4-hydroxy-3-methylbu 0.396 0.516 0.258 1.8e-17
UNIPROTKB|Q8EBI7318 ispH "4-hydroxy-3-methylbut-2- 0.379 0.430 0.284 2.1e-17
TIGR_CMR|SO_3529318 SO_3529 "penicillin tolerance 0.379 0.430 0.284 2.1e-17
UNIPROTKB|Q749Y8282 ispH "4-hydroxy-3-methylbut-2- 0.639 0.819 0.259 8.8e-15
TIGR_CMR|GSU_2604282 GSU_2604 "penicillin tolerance 0.639 0.819 0.259 8.8e-15
UNIPROTKB|P62623316 ispH "1-hydroxy-2-methyl-2-(E) 0.360 0.411 0.284 2e-14
TAIR|locus:2116164 HDR "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1478 (525.3 bits), Expect = 1.8e-151, P = 1.8e-151
 Identities = 271/329 (82%), Positives = 307/329 (93%)

Query:     1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
             MN+EYTSDI++ LK NG+ Y+WG+V VKLA++YGFCWGVERAVQIAYEARKQFPEE++WI
Sbjct:    87 MNREYTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWI 146

Query:    61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
             TNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPAFGA V+EM  LN+K V
Sbjct:   147 TNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKV 206

Query:   121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
             QIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASFAGKYIIVKNMKEA YV
Sbjct:   207 QIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYV 266

Query:   181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
             CDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIANQTTMLKGETEEIG+L+
Sbjct:   267 CDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLL 326

Query:   241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
             E TMMRK+GVENV+ HFISFNTICDATQERQDA+Y++VEEK+DL+LVVGGWNSSNTSHLQ
Sbjct:   327 ETTMMRKYGVENVSGHFISFNTICDATQERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQ 386

Query:   301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKL 329
             EI+E RGIPSYWIDSEKRIGPGNKIAYKL
Sbjct:   387 EISEARGIPSYWIDSEKRIGPGNKIAYKL 415
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS
GO:0046677 "response to antibiotic" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity" evidence=IGI
GO:0009507 "chloroplast" evidence=IDA
TIGR_CMR|NSE_0438 NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0685 VC_0685 "hydroxymethylbutenyl pyrophosphate reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1211 CPS_1211 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0973 CJE_0973 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EBI7 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3529 SO_3529 "penicillin tolerance protein LytB" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q749Y8 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2604 GSU_2604 "penicillin tolerance protein LytB" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P62623 ispH "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q55643ISPH_SYNY31, ., 1, 7, ., 1, ., 20.62120.89750.8548N/Ano
B0JVA7ISPH_MICAN1, ., 1, 7, ., 1, ., 20.62860.91680.8233yesno
P58674ISPH_NOSS11, ., 1, 7, ., 1, ., 20.61810.89750.8059yesno
Q31CR8ISPH_PROM91, ., 1, 7, ., 1, ., 20.58930.86700.7864yesno
B7KEG3ISPH_CYAP71, ., 1, 7, ., 1, ., 20.62420.89750.8059yesno
B2IZV5ISPH_NOSP71, ., 1, 7, ., 1, ., 20.60300.89750.8059yesno
B0C4N8ISPH_ACAM11, ., 1, 7, ., 1, ., 20.62460.91410.7951yesno
B8HWD3ISPH_CYAP41, ., 1, 7, ., 1, ., 20.64630.88910.7925yesno
Q10WA8ISPH_TRIEI1, ., 1, 7, ., 1, ., 20.58780.89750.8079yesno
Q7U9K4ISPH_SYNPX1, ., 1, 7, ., 1, ., 20.58910.89750.8120yesno
B1XPG7ISPH_SYNP21, ., 1, 7, ., 1, ., 20.62720.89750.8039yesno
A2BP63ISPH_PROMS1, ., 1, 7, ., 1, ., 20.59240.86700.7864yesno
A5GIF7ISPH_SYNPW1, ., 1, 7, ., 1, ., 20.60.89750.8120yesno
Q7V329ISPH_PROMP1, ., 1, 7, ., 1, ., 20.58750.86980.7889yesno
Q3B080ISPH_SYNS91, ., 1, 7, ., 1, ., 20.58610.89750.8120yesno
Q3M8X6ISPH_ANAVT1, ., 1, 7, ., 1, ., 20.61810.89750.8059yesno
B1WTZ2ISPH_CYAA51, ., 1, 7, ., 1, ., 20.66960.89750.8059yesno
A2CCK3ISPH_PROM31, ., 1, 7, ., 1, ., 20.57570.89750.8140yesno
A5GWG3ISPH_SYNR31, ., 1, 7, ., 1, ., 20.61210.89750.7980yesno
Q7VDS2ISPH_PROMA1, ., 1, 7, ., 1, ., 20.57700.89750.8yesno
Q46HB0ISPH_PROMT1, ., 1, 7, ., 1, ., 20.60.86980.7830yesno
A9BDN6ISPH_PROM41, ., 1, 7, ., 1, ., 20.58000.89750.8019yesno
A2C096ISPH_PROM11, ., 1, 7, ., 1, ., 20.60.86980.7830yesno
Q7V4T7ISPH_PROMM1, ., 1, 7, ., 1, ., 20.57870.89750.8140yesno
Q31S64ISPH_SYNE71, ., 1, 7, ., 1, ., 20.61510.89750.8140yesno
Q8DK29ISPH_THEEB1, ., 1, 7, ., 1, ., 20.64540.89750.8059yesno
Q94B35ISPH_ARATH1, ., 1, 7, ., 1, ., 20.82370.91130.7060yesno
Q0IDE5ISPH_SYNS31, ., 1, 7, ., 1, ., 20.60300.89750.8140yesno
Q6AVG6ISPH_ORYSJ1, ., 1, 7, ., 1, ., 20.86010.91130.7167yesno
Q5N249ISPH_SYNP61, ., 1, 7, ., 1, ., 20.61510.89750.8140yesno
Q7NG74ISPH_GLOVI1, ., 1, 7, ., 1, ., 20.56340.86700.7505yesno
B7K4V8ISPH_CYAP81, ., 1, 7, ., 1, ., 20.62120.89750.8039yesno
Q3AN10ISPH_SYNSC1, ., 1, 7, ., 1, ., 20.59750.90300.8170yesno
A3PAY5ISPH_PROM01, ., 1, 7, ., 1, ., 20.59240.86700.7864yesno
A2BUP5ISPH_PROM51, ., 1, 7, ., 1, ., 20.57700.89750.8140yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.1.20.946
3rd Layer1.17.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
PLN02821460 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-buten 0.0
PRK13371387 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl d 0.0
COG0761294 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphos 7e-85
pfam02401280 pfam02401, LYTB, LytB protein 9e-84
TIGR00216280 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2 1e-78
PRK01045298 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl dipho 8e-47
PRK00087 647 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d 5e-40
PRK12360281 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl d 5e-39
>gnl|CDD|215440 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
 Score =  691 bits (1786), Expect = 0.0
 Identities = 279/331 (84%), Positives = 306/331 (92%), Gaps = 1/331 (0%)

Query: 1   MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIW 59
           M  EY TSD++K LKENG  YTWG+V VKLA++YGFCWGVERAVQIAYEARKQFP+EK+W
Sbjct: 81  MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLW 140

Query: 60  ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119
           ITNEIIHNPTVNKRLEEM VQ I VEEG K F VV +GDVV+LPAFGA+VEEM TLN+KN
Sbjct: 141 ITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKN 200

Query: 120 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEY 179
           VQIVDTTCPWVSKVW +VEKHKK DYTS+IHGKY+HEETVATASFAGKYIIVKNMKEA Y
Sbjct: 201 VQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEATY 260

Query: 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL 239
           VCDYILGG+L+GSS TKE FLEKFK AVSKGFDPD DLVKVGIANQTTMLKGETEEIGKL
Sbjct: 261 VCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL 320

Query: 240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299
           +EKTMM+K+GVENVN+HF+SFNTICDATQERQDAMYK+VEEK+DL+LVVGGWNSSNTSHL
Sbjct: 321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHL 380

Query: 300 QEIAEDRGIPSYWIDSEKRIGPGNKIAYKLM 330
           QEIAE +GIPSYWIDSE+RIGPGN IA+KL 
Sbjct: 381 QEIAEHKGIPSYWIDSEERIGPGNTIAHKLN 411

Length = 460
>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>gnl|CDD|223832 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|217018 pfam02401, LYTB, LytB protein Back     alignment and domain information
>gnl|CDD|232878 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>gnl|CDD|234893 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>gnl|CDD|237075 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
PLN02821460 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red 100.0
PRK13371387 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 100.0
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
COG0761294 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 100.0
PRK00087 647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 96.81
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 95.34
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 93.97
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 93.06
PRK13371387 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 90.82
cd01537 264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 89.23
COG1587248 HemD Uroporphyrinogen-III synthase [Coenzyme metab 88.37
PRK00087 647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 87.51
PLN02821460 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red 85.73
PF02602231 HEM4: Uroporphyrinogen-III synthase HemD; InterPro 83.77
PF13407 257 Peripla_BP_4: Periplasmic binding protein domain; 81.18
COG1023300 Gnd Predicted 6-phosphogluconate dehydrogenase [Ca 80.74
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
Probab=100.00  E-value=1.9e-104  Score=797.74  Aligned_cols=340  Identities=82%  Similarity=1.277  Sum_probs=325.2

Q ss_pred             CCccc-chhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCc
Q 018062            1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV   79 (361)
Q Consensus         1 ~~~~~-~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV   79 (361)
                      |+++| +|+||+.||++|+.+.||+|+|+||+++||||||+|||++|+++++++++++||+||||||||+|+++|+++||
T Consensus        81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV  160 (460)
T PLN02821         81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV  160 (460)
T ss_pred             hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence            57899 99999999999999999999999999999999999999999999887777899999999999999999999999


Q ss_pred             EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 018062           80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV  159 (361)
Q Consensus        80 ~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~  159 (361)
                      +++++.++.++++++++|++|||||||+||++++.|+++|+.|||||||||+|+|+.|+++.++||++||+|+++||||+
T Consensus       161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~  240 (460)
T PLN02821        161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV  240 (460)
T ss_pred             EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence            99997666667899998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCcEEEEcChhhhHhhhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHH
Q 018062          160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL  239 (361)
Q Consensus       160 gi~g~a~~~ivv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~  239 (361)
                      |+.||+++++||.+++|++++++||.++.+||+++++++|+++|+++++++|||..+++|+++++||||+.++|++|++.
T Consensus       241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~  320 (460)
T PLN02821        241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL  320 (460)
T ss_pred             ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999876778999999999999999999999


Q ss_pred             HHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCC
Q 018062          240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI  319 (361)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL  319 (361)
                      |+++++++++|.+.+.|+.++||||+||++||+|+.+|++.++|+||||||+|||||+||+|||++.|+|+||||+++||
T Consensus       321 l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI  400 (460)
T PLN02821        321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERI  400 (460)
T ss_pred             HHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHc
Confidence            99999999999888899999999999999999999999646899999999999999999999999999999999999999


Q ss_pred             CCCCcccccc-----------c-cceeEEEeee
Q 018062          320 GPGNKIAYKL-----------M-VCVNILNFTC  340 (361)
Q Consensus       320 ~~~~~~~~~~-----------~-~~~~~~~~~~  340 (361)
                      ++.|.|.|++           | .+...+|||+
T Consensus       401 ~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITA  433 (460)
T PLN02821        401 GPGNTIAHKLNHGELVEKENWLPEGPVTIGVTS  433 (460)
T ss_pred             CcccccccccccchhhhhHHHhccCCCEEEEec
Confidence            9999999987           4 3467899997

>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3dnf_A297 Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diph 1e-21
4eb3_A327 Crystal Structure Of Isph In Complex With Iso-hmbpp 1e-16
4h4c_A323 Isph In Complex With (e)-4-fluoro-3-methylbut-2-eny 2e-16
3urk_A324 Isph In Complex With Propynyl Diphosphate (1061) Le 2e-16
3f7t_A328 Structure Of Active Isph Shows A Novel Fold With A 2e-16
3szu_A328 Isph:hmbpp Complex Structure Of E126q Mutant Length 4e-16
3t0f_A328 Isph:hmbpp (Substrate) Structure Of The E126d Mutan 4e-16
3t0g_A328 Isph:hmbpp (Substrate) Structure Of The T167c Mutan 7e-16
3zgl_A332 Crystal Structures Of Escherichia Coli Isph In Comp 1e-15
3ke8_A326 Crystal Structure Of Isph:hmbpp-Complex Length = 32 1e-15
>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate Reductase, The Terminal Enzyme Of The Non-mevalonate Pathway Length = 297 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 57/301 (18%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           V + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V   P 
Sbjct: 2   VDIIIAEHAGFCFGVKRAVKLAEESLKE-SQGKVYTLGPIIHNPQEVNRLKNLGV--FP- 57
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
                Q +   +GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  
Sbjct: 58  ----SQGEEFKEGDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREG 113
Query: 145 YTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL 200
           Y  ++ G+ +H E + T  +     GK I+V+ +++              G +   E   
Sbjct: 114 YFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDI-------------GEALKHE--- 157
Query: 201 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF 260
                             +VGI  QTT    + EE  K V   +     V+ V       
Sbjct: 158 ------------------RVGIVAQTT----QNEEFFKEVVGEIA--LWVKEVK----VI 189
Query: 261 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320
           NTIC+AT  RQ+++ K+  E VD+++++GG NS NT  L  I+++    +Y I++ + + 
Sbjct: 190 NTICNATSLRQESVKKLAPE-VDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQ 248
Query: 321 P 321
           P
Sbjct: 249 P 249
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp Length = 327 Back     alignment and structure
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl Diphosphate Length = 323 Back     alignment and structure
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061) Length = 324 Back     alignment and structure
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A [3fe-4s] Cluster In The Catalytic Centre Length = 328 Back     alignment and structure
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant Length = 328 Back     alignment and structure
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant Length = 328 Back     alignment and structure
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant Length = 328 Back     alignment and structure
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex With Ambpp A Potent Inhibitor Of The Methylerythritol Phosphate Pathway Length = 332 Back     alignment and structure
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 1e-50
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 1e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Length = 297 Back     alignment and structure
 Score =  170 bits (433), Expect = 1e-50
 Identities = 77/300 (25%), Positives = 142/300 (47%), Gaps = 57/300 (19%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
            + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V      
Sbjct: 3   DIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVF---PS 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           +     +   +GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  Y
Sbjct: 59  Q----GEEFKEGDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGY 114

Query: 146 TSIIHGKYSHEETVATA----SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLE 201
             ++ G+ +H E + T     +  GK I+V+ +++           E             
Sbjct: 115 FVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIG---------EAL----------- 154

Query: 202 KFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFN 261
                       +    +VGI  QTT  +   +E+   V + +          +     N
Sbjct: 155 ----------KHE----RVGIVAQTTQNEEFFKEV---VGE-IALWV------KEVKVIN 190

Query: 262 TICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321
           TIC+AT  RQ+++ K+  E VD+++++GG NS NT  L  I+++    +Y I++ + + P
Sbjct: 191 TICNATSLRQESVKKLAPE-VDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP 249
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 100.0
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 100.0
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 95.45
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 95.14
3jx9_A170 Putative phosphoheptose isomerase; YP_001815198.1, 80.6
3d8t_A286 Uroporphyrinogen-III synthase; heme biosynthesis, 80.01
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
Probab=100.00  E-value=6.2e-91  Score=671.57  Aligned_cols=258  Identities=29%  Similarity=0.481  Sum_probs=243.1

Q ss_pred             ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEc
Q 018062           24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP  103 (361)
Q Consensus        24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIr  103 (361)
                      .|+|++|+++||||||+|||++|+++++++ ++|||++|||||||+|+++|+++|+.++++       +++|+|++||||
T Consensus         1 ~m~I~lA~~~GFC~GV~RAI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIir   72 (297)
T 3dnf_A            1 MVDIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIR   72 (297)
T ss_dssp             CCEEEECTTCSSCHHHHHHHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEEC
T ss_pred             CeEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEE
Confidence            499999999999999999999999999876 479999999999999999999999999974       678889999999


Q ss_pred             CCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC---C-cEEEEcChhhhHh
Q 018062          104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEY  179 (361)
Q Consensus       104 AHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a---~-~~ivv~~~~e~~~  179 (361)
                      |||+||+++++|+++|++|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||+   + +++||++++|++.
T Consensus        73 AHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~  152 (297)
T 3dnf_A           73 SHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE  152 (297)
T ss_dssp             TTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG
T ss_pred             CCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999   4 6899999999987


Q ss_pred             hhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccc
Q 018062          180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS  259 (361)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v  259 (361)
                      +.                                  ..+|+++++|||||.++|.+|+++|+++||          ++.+
T Consensus       153 l~----------------------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p----------~~~~  188 (297)
T 3dnf_A          153 AL----------------------------------KHERVGIVAQTTQNEEFFKEVVGEIALWVK----------EVKV  188 (297)
T ss_dssp             GG----------------------------------GCSEEEEEECTTCCHHHHHHHHHHHHHHSS----------EEEE
T ss_pred             cC----------------------------------CCCcEEEEEecCCcHHHHHHHHHHHHHhCC----------CCCC
Confidence            51                                  126999999999999999999999987432          4678


Q ss_pred             cccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEee
Q 018062          260 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFT  339 (361)
Q Consensus       260 ~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~  339 (361)
                      +||||+||++||+|+++|| +++|+||||||+|||||+||+|+|++.|+++||||+++||+++      ||.+.+.+|||
T Consensus       189 ~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~------wl~~~~~VGIT  261 (297)
T 3dnf_A          189 INTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQPE------WFRGVKRVGIS  261 (297)
T ss_dssp             ECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCGG------GGTTCSEEEEE
T ss_pred             CCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCHH------HhCCCCEEEEe
Confidence            9999999999999999998 7899999999999999999999999999999999999999999      99999999999


Q ss_pred             e
Q 018062          340 C  340 (361)
Q Consensus       340 ~  340 (361)
                      +
T Consensus       262 A  262 (297)
T 3dnf_A          262 A  262 (297)
T ss_dssp             E
T ss_pred             e
Confidence            8
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00