Citrus Sinensis ID: 018074

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNTCKSVILPS
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHcccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHEEEEEEccHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHccc
ccccccccccccccccccEccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHcc
mrdlksvlsskestkadvnrrssnyhpsiwgdhfinvssnekytnTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDShvngncdvnydhnnDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLShlstplvdqvehsleiplhrgmprleARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILgvyfepkystTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNtcksvilps
mrdlksvlsskestkadvnrrssnyhpsiwgdhfinvsSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNTCKSVILPS
MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFsrkhlksllshlsTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNTCKSVILPS
**************************PSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNTCKSVI***
***************************SIWGDHFINVSSN**********RFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS*****LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNTCKSVILPS
********************RSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNTCKSVILPS
*****************VNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNTCKSVILPS
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MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTxxxxxxxxxxxxxxxxxxxxxNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQQMSYQNTCKSVILPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q6Q3H3 557 (-)-germacrene D synthase yes no 0.941 0.610 0.507 1e-103
F6M8H4 559 Probable sesquiterpene sy N/A no 0.972 0.627 0.519 2e-99
F6M8H7 562 Probable sesquiterpene sy N/A no 0.927 0.596 0.527 5e-99
E3W207 559 Sesquiterpene synthase OS N/A no 0.972 0.627 0.522 8e-99
F6M8H6 562 Probable sesquiterpene sy N/A no 0.927 0.596 0.527 2e-97
E3W208 562 Sesquiterpene synthase OS N/A no 0.927 0.596 0.524 6e-97
B5A435 559 Sesquiterpene synthase OS N/A no 0.972 0.627 0.511 1e-96
Q39760 554 (+)-delta-cadinene syntha N/A no 0.875 0.570 0.514 2e-95
F6M8H5 562 Probable sesquiterpene sy N/A no 0.927 0.596 0.515 4e-95
Q6Q3H2 556 Valencene synthase OS=Vit no no 0.869 0.564 0.527 5e-95
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/357 (50%), Positives = 253/357 (70%), Gaps = 17/357 (4%)

Query: 7   VLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS- 65
           +L+  ++   +V RR +N+HPSIWGDHF++ +S    T+  +++  + LK E+ K+L++ 
Sbjct: 9   LLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAA 68

Query: 66  -NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYI 124
            +++A K L     +++ +QRLGVAYHFE+EI E L+ ++D  V            D+Y 
Sbjct: 69  DDDSAQKLL-----LIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSA-------EEDVYT 116

Query: 125 VALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184
            +LRFRLLRQ GY VS D+F  F+D +G FK  L++D +G+L LYEA++ RV GE+IL+E
Sbjct: 117 ASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDE 176

Query: 185 ACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELIL 244
           A  F+  HL+S   H S PL +QV H+L+ P+ +G+PRLEAR Y S+Y+AD+S  N+ +L
Sbjct: 177 ALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS-HNKALL 235

Query: 245 ELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTT 304
           +LAKLDFNLLQ LH+ ELS+IS WWKD+DFA KLPFARDR+VECYFWILGVYFEP++   
Sbjct: 236 KLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFA 295

Query: 305 RKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER--CGKLWQQMSYQNTCKSVIL 359
           R+ +TK+IA+ S+IDDIYDVYGTLEEL+LFT A+ER     + Q   Y   C   +L
Sbjct: 296 RRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALL 352
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.941 0.610 0.507 1e-101
75223414 557 RecName: Full=(-)-germacrene D synthase 0.941 0.610 0.507 1e-101
147828675 557 hypothetical protein VITISV_013313 [Viti 0.941 0.610 0.504 1e-100
147856860 557 hypothetical protein VITISV_030783 [Viti 0.941 0.610 0.504 1e-100
297740982 584 unnamed protein product [Vitis vinifera] 0.900 0.556 0.549 1e-99
225460101 555 PREDICTED: valencene synthase [Vitis vin 0.900 0.585 0.549 1e-99
225461172 557 PREDICTED: (-)-germacrene D synthase [Vi 0.941 0.610 0.504 2e-99
302143187 725 unnamed protein product [Vitis vinifera] 0.894 0.445 0.520 3e-99
347664489 557 (E)-beta-caryophyllene synthase [Vitis v 0.941 0.610 0.495 3e-98
408407794 559 RecName: Full=Probable sesquiterpene syn 0.972 0.627 0.519 1e-97
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/357 (50%), Positives = 253/357 (70%), Gaps = 17/357 (4%)

Query: 7   VLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS- 65
           +L+  ++   +V RR +N+HPSIWGDHF++ +S    T+  +++  + LK E+ K+L++ 
Sbjct: 9   LLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAA 68

Query: 66  -NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYI 124
            +++A K L     +++ +QRLGVAYHFE+EI E L+ ++D  V            D+Y 
Sbjct: 69  DDDSAQKLL-----LIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSA-------EEDVYT 116

Query: 125 VALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184
            +LRFRLLRQ GY VS D+F  F+D +G FK  L++D +G+L LYEA++ RV GE+IL+E
Sbjct: 117 ASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDE 176

Query: 185 ACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELIL 244
           A  F+  HL+S   H S PL +QV H+L+ P+ +G+PRLEAR Y S+Y+AD+S  N+ +L
Sbjct: 177 ALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS-HNKALL 235

Query: 245 ELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTT 304
           +LAKLDFNLLQ LH+ ELS+IS WWKD+DFA KLPFARDR+VECYFWILGVYFEP++   
Sbjct: 236 KLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFA 295

Query: 305 RKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER--CGKLWQQMSYQNTCKSVIL 359
           R+ +TK+IA+ S+IDDIYDVYGTLEEL+LFT A+ER     + Q   Y   C   +L
Sbjct: 296 RRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALL 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740982|emb|CBI31294.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225460101|ref|XP_002274781.1| PREDICTED: valencene synthase [Vitis vinifera] gi|147775857|emb|CAN64791.1| hypothetical protein VITISV_001915 [Vitis vinifera] gi|313755472|gb|ADR74227.1| alpha-humulene synthase [synthetic construct] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143187|emb|CBI20482.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|408407794|sp|F6M8H4.1|SAST_SANAL RecName: Full=Probable sesquiterpene synthase; Short=SaSTPS gi|333411339|gb|AEF32534.1| sesquiterpene synthase [Santalum album] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
UNIPROTKB|B5A435 559 B5A435 "Sesquiterpene synthase 0.969 0.626 0.5 1.4e-87
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.880 0.556 0.483 4.7e-80
UNIPROTKB|D0VMR6 547 C2 "Delta-guaiene synthase 1" 0.867 0.572 0.481 6.8e-79
UNIPROTKB|D0VMR7 547 C3 "Delta-guaiene synthase 2" 0.867 0.572 0.472 4.8e-78
UNIPROTKB|D0VMR8 547 C4 "Delta-guaiene synthase 3" 0.867 0.572 0.475 1.3e-77
UNIPROTKB|B3TPQ6 550 B3TPQ6 "Beta-cubebene synthase 0.867 0.569 0.490 1.6e-77
UNIPROTKB|J7LJN5 555 J7LJN5 "Beta-caryophyllene syn 0.955 0.621 0.434 2.7e-77
UNIPROTKB|Q49SP5 554 Q49SP5 "Germacrene A synthase" 0.853 0.555 0.485 5e-76
UNIPROTKB|J7LMP2 565 J7LMP2 "Bicyclogermacrene synt 0.914 0.584 0.434 2.2e-73
UNIPROTKB|J7LP58 564 J7LP58 "Alpha-copaene/delta-ca 0.897 0.574 0.439 4.6e-73
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 181/362 (50%), Positives = 246/362 (67%)

Query:     1 MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIE 60
             M + K  +SS  + K +++R  +N+ PSIWGD FIN +  ++    + E++ E LK ++ 
Sbjct:     1 MENQKVPISSVPNLK-ELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVR 59

Query:    61 KLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY-DSHVNGNCDVNYDHN 119
             + L +  T  K L+++  I++  QRLG+AYHFENEI+E+L+ IY  ++V  NC   +  +
Sbjct:    60 RELAA--TVDKPLQQL-NIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNC---FQGS 113

Query:   120 NDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGE 179
             +DLY VAL FRLLRQ GYKVS D+F KFRD +  FK  L  DAKGLL LYEA++L V GE
Sbjct:   114 HDLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGE 173

Query:   180 NILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTR 239
              +L++A EF              PL +QV H+L  PL +G+PRLEA  +  IYEA +S  
Sbjct:   174 EMLDDALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDS-H 232

Query:   240 NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 299
             N+ +L+LAKLDFNLLQ+LH+ ELS+++RWWK +DFA K PFARDRLVE YFW+LGVYFEP
Sbjct:   233 NKALLKLAKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEP 292

Query:   300 KYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER--CGKLWQQMSYQNTC-KS 356
             +YS  RK + K+  + S IDDIYD YGTL+EL+LFT A++R   G L Q   Y   C KS
Sbjct:   293 QYSLARKIIIKVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKS 352

Query:   357 VI 358
             ++
Sbjct:   353 IL 354
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR7 C3 "Delta-guaiene synthase 2" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.50700.94180.6104yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-154
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 4e-72
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 6e-48
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 7e-40
cd00868 284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 4e-35
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-33
cd00385 243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-08
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  445 bits (1146), Expect = e-154
 Identities = 177/325 (54%), Positives = 225/325 (69%), Gaps = 11/325 (3%)

Query: 20  RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVA 78
           R S+N+ PS+WGD HF+++SS+      E+E+  E LK E+ K+L  +       E +  
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWL 59

Query: 79  IVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYK 138
           I   LQRLG++YHFE+EIKE L  IY             + +DLY  AL FRLLRQHGY 
Sbjct: 60  IDR-LQRLGISYHFEDEIKEILDYIYRYWTERGES----NEDDLYTTALGFRLLRQHGYN 114

Query: 139 VSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS 198
           VS+D+FKKF+DE G+FK  LT D KG+L LYEAS+L   GE+IL+EA  F+ KHL+  L 
Sbjct: 115 VSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLE 174

Query: 199 H---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQ 255
               +   L  ++E++LEIPLH  +PRLEAR YI  YE ++   NE +LELAKLDFN+LQ
Sbjct: 175 SNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNILQ 233

Query: 256 ALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIA 315
           ALH+ EL  +SRWWKD+D A+KLPFARDRLVECYFW  G YFEP+YS  R  + K IA+ 
Sbjct: 234 ALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALI 293

Query: 316 SVIDDIYDVYGTLEELKLFTHAIER 340
           +VIDD YDVYGTLEEL+LFT A+ER
Sbjct: 294 TVIDDTYDVYGTLEELELFTEAVER 318

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936 270 Terpene_synth_C: Terpene synthase family, metal bi 99.78
cd00868 284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.59
cd00687 303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 97.62
cd00385 243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 93.84
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=6e-109  Score=856.74  Aligned_cols=330  Identities=54%  Similarity=0.905  Sum_probs=307.6

Q ss_pred             CCCCCCCCCCCcc-ccccccCCcccchHHHHHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHhCcccccHHHH
Q 018074           20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTA--WKTLEEIVAIVNQLQRLGVAYHFENEI   96 (361)
Q Consensus        20 r~~a~~~psiW~~-~fl~~~~~~~~~~~~~~~~~e~LkeeVk~ml~~~~~~--~~d~~~~L~lID~LqRLGI~yhFe~EI   96 (361)
                      ||++||+||+||+ .|++++++... ...+.+++++||++||+||..   .  +.|++++|+|||+||||||+|||++||
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~---~~~~~~~~~~l~liD~lqrLGi~~hF~~EI   76 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLED---SEYPVDLFERLWLIDRLQRLGISYHFEDEI   76 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence            7899999999999 66666544321 226889999999999999985   3  579999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCchhhHHHHHHHhhhcCccccccccccccccccccccccchhhHHHHHHHhhhhccC
Q 018074           97 KEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRV  176 (361)
Q Consensus        97 ~~~L~~iy~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~  176 (361)
                      +++|++||++|.+.+    .....|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++
T Consensus        77 ~~~L~~i~~~~~~~~----~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~  152 (542)
T cd00684          77 KEILDYIYRYWTERG----ESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSF  152 (542)
T ss_pred             HHHHHHHHHhhcccc----cccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCC
Confidence            999999999875321    1235799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHhHhhc---CCCchHHHHHHhccCCccCCcchhHHhhhHHhhhcCCccccHHHHHHHHhhhHH
Q 018074          177 QGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNL  253 (361)
Q Consensus       177 ~gE~iLdeA~~Ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~~n~~lLelAKlDFn~  253 (361)
                      |||+|||||+.||++||++.++.   ++++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||+|||+
T Consensus       153 ~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~-~n~~lLelAkldfn~  231 (542)
T cd00684         153 PGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNI  231 (542)
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCcc-ccHHHHHHHHHHHHH
Confidence            99999999999999999999886   78999999999999999999999999999999999999 999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHhCCCCcCccccchhhHHHHHhhccccCCCChhhhHHHHHHHHHHHhhhhhccccCCHHHHHH
Q 018074          254 LQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKL  333 (361)
Q Consensus       254 ~Qs~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfwa~~~~fEPq~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~  333 (361)
                      ||++||+||++++|||+++||.++|||||+|++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||+.
T Consensus       232 ~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~  311 (542)
T cd00684         232 LQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELEL  311 (542)
T ss_pred             HhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHH
Confidence            99999999999999999999998889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCcCC--cchHHHhhhhc
Q 018074          334 FTHAIERCGKLWQQ--MSYQNTCKSVI  358 (361)
Q Consensus       334 ft~aVeRWD~~~~~--~~y~~~~~~~~  358 (361)
                      ||+||+|||++++.  |.||+.|-..+
T Consensus       312 ft~ai~rwd~~~~~~lPe~mk~~~~al  338 (542)
T cd00684         312 FTEAVERWDISAIDQLPEYMKIVFKAL  338 (542)
T ss_pred             HHHHHHhccccchhhccHHHHHHHHHH
Confidence            99999999998776  99999886543

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 4e-93
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-82
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-82
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 2e-82
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-82
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-82
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-82
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 5e-82
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 5e-81
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 7e-81
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 7e-65
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 4e-64
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 8e-61
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 5e-56
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 6e-46
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 4e-45
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-40
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 5e-29
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  338 bits (866), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 169/334 (50%), Positives = 230/334 (68%), Gaps = 18/334 (5%)
Query: 9   SSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSN-- 66
           SS  S+  D  R  +++ PSIWGD F+N    +K  + E EKR + LK E+ K++V+   
Sbjct: 11  SSPLSSNKDEMRPKADFQPSIWGDLFLNCP--DKNIDAETEKRHQQLKEEVRKMIVAPMA 68
Query: 67  NTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVA 126
           N+  K     +A ++ +QRLGV+YHF  EI++ L+ IY +        N D  NDLY  +
Sbjct: 69  NSTQK-----LAFIDSVQRLGVSYHFTKEIEDELENIYHN--------NNDAENDLYTTS 115
Query: 127 LRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEAC 186
           +RFRLLR+HGY VS D+F KF+DE+G FK+ +T+D +GLL LY+ASYLRV GE+IL+EA 
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175
Query: 187 EFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILEL 246
            F              PL ++V H+L+  + RG+PR+EAR Y+S+Y+ D  + N+ +LE 
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ-DIESHNKALLEF 234
Query: 247 AKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK 306
           AK+DFN+LQ LHR ELSEI RWWKD+DF  KLP+ARDR+VE YFWI GVYFEP+YS  RK
Sbjct: 235 AKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRK 294
Query: 307 FMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER 340
            +TK+IA+AS++DD YD Y T EEL  +T+AIER
Sbjct: 295 MLTKVIAMASIVDDTYDSYATYEELIPYTNAIER 328
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-112
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 1e-111
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 1e-111
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-109
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 1e-107
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 1e-105
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-85
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-84
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 8e-83
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 4e-04
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 4e-80
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-08
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-05
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 3e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  336 bits (862), Expect = e-112
 Identities = 168/337 (49%), Positives = 231/337 (68%), Gaps = 14/337 (4%)

Query: 9   SSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNT 68
           SS  S+  D  R  +++ PSIWGD F+N        + E EKR + LK E+ K++V+   
Sbjct: 11  SSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKN--IDAETEKRHQQLKEEVRKMIVAPM- 67

Query: 69  AWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALR 128
                 + +A ++ +QRLGV+YHF  EI++ L+ IY ++         D  NDLY  ++R
Sbjct: 68  --ANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNN--------NDAENDLYTTSIR 117

Query: 129 FRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEF 188
           FRLLR+HGY VS D+F KF+DE+G FK+ +T+D +GLL LY+ASYLRV GE+IL+EA  F
Sbjct: 118 FRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISF 177

Query: 189 SRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAK 248
           +  HL   ++ L  PL ++V H+L+  + RG+PR+EAR Y+S+Y+   S  N+ +LE AK
Sbjct: 178 TTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIES-HNKALLEFAK 236

Query: 249 LDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFM 308
           +DFN+LQ LHR ELSEI RWWKD+DF  KLP+ARDR+VE YFWI GVYFEP+YS  RK +
Sbjct: 237 IDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKML 296

Query: 309 TKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLW 345
           TK+IA+AS++DD YD Y T EEL  +T+AIER     
Sbjct: 297 TKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKC 333
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 99.74
1di1_A 300 Aristolochene synthase; sesquiterpene cyclase, iso 99.74
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.73
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 99.17
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.63
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-118  Score=927.18  Aligned_cols=332  Identities=51%  Similarity=0.913  Sum_probs=303.7

Q ss_pred             cccccccCCCCCCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHhCccccc
Q 018074           13 STKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHF   92 (361)
Q Consensus        13 ~~~~~~~r~~a~~~psiW~~~fl~~~~~~~~~~~~~~~~~e~LkeeVk~ml~~~~~~~~d~~~~L~lID~LqRLGI~yhF   92 (361)
                      +++.++.||+||||||+|||+||++ +. .+..+.+.+|+++||+|||+||.+   ...+++++|+|||+||||||+|||
T Consensus        15 ~~~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~---~~~~~~~~l~lID~lqrLGi~~hF   89 (554)
T 3g4d_A           15 SSNKDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVA---PMANSTQKLAFIDSVQRLGVSYHF   89 (554)
T ss_dssp             ----------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHHTTCGGGC
T ss_pred             hccCCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHh---cccCHHHHHHHHHHHHHcCchhhh
Confidence            3445568999999999999999997 43 344678999999999999999974   246899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCchhhHHHHHHHhhhcCccccccccccccccccccccccchhhHHHHHHHhhh
Q 018074           93 ENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEAS  172 (361)
Q Consensus        93 e~EI~~~L~~iy~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS  172 (361)
                      ++||+++|++||++ . .      ....|||+|||+|||||||||+||||||++|+|++|+|++++.+|++|||||||||
T Consensus        90 ~~EI~~~L~~i~~~-~-~------~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs  161 (554)
T 3g4d_A           90 TKEIEDELENIYHN-N-N------DAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQAS  161 (554)
T ss_dssp             HHHHHHHHHHHHHS-C-C------CTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-c-C------CCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHH
Confidence            99999999999985 1 1      22379999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCchHHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCCccCCcchhHHhhhHHhhhcCCccccHHHHHHHHhhhH
Q 018074          173 YLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN  252 (361)
Q Consensus       173 ~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~~n~~lLelAKlDFn  252 (361)
                      ||++|||+|||+|+.||++||++.+++++++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||+|||
T Consensus       162 ~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~-~n~~lLelAkldFn  240 (554)
T 3g4d_A          162 YLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIES-HNKALLEFAKIDFN  240 (554)
T ss_dssp             TTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTT-CCHHHHHHHHHHHH
T ss_pred             hCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCcc-ccHHHHHHHHHHHH
Confidence            99999999999999999999999888788899999999999999999999999999999999998 99999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHhCCCCcCccccchhhHHHHHhhccccCCCChhhhHHHHHHHHHHHhhhhhccccCCHHHHH
Q 018074          253 LLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELK  332 (361)
Q Consensus       253 ~~Qs~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfwa~~~~fEPq~s~~R~~~tK~~~litiiDD~yD~yGTleEL~  332 (361)
                      +||++||+||++|+||||++||+++|||||||+||||||++|++||||||.+|+++||+++|+|+|||+||+|||+|||+
T Consensus       241 ~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~  320 (554)
T 3g4d_A          241 MLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELI  320 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCcCC--cchHHHhhhhc
Q 018074          333 LFTHAIERCGKLWQQ--MSYQNTCKSVI  358 (361)
Q Consensus       333 ~ft~aVeRWD~~~~~--~~y~~~~~~~~  358 (361)
                      +||+||+|||++++.  |.||+.|-..+
T Consensus       321 ~ft~ai~RWD~~~~~~LPeymK~~f~al  348 (554)
T 3g4d_A          321 PYTNAIERWDIKCIDEIPEYMKPSYKAL  348 (554)
T ss_dssp             HHHHHHHHCCGGGGGGSCGGGHHHHHHH
T ss_pred             HHHHHHHhcCccccccCcHHHHHHHHHH
Confidence            999999999999876  99999996543
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 1e-70
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-69
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 6e-53
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 2e-51
d1ps1a_ 311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-12
d1di1a_ 300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-06
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  217 bits (554), Expect = 1e-70
 Identities = 87/210 (41%), Positives = 131/210 (62%), Gaps = 14/210 (6%)

Query: 29  IWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGV 88
           +WGD F++ S + +       +  E LK +   +L++     + L + + +++ ++RLG+
Sbjct: 1   LWGDQFLSFSIDNQVAEKY-AQEIEALKEQTRSMLLATG---RKLADTLNLIDIIERLGI 56

Query: 89  AYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFR 148
           +YHFE EI E L  IY+            + NDL   AL+FRLLRQHG+ +S +IF KF+
Sbjct: 57  SYHFEKEIDEILDQIYN---------QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 107

Query: 149 DEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQV 208
           DE G+FK  L +D  GLL LYEAS++R   ++ILE+A  FS  HL+S   HL +PL +QV
Sbjct: 108 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 167

Query: 209 EHSLEIPLHRGMPRLEARQYI-SIYEADNS 237
            H+LE  LH+G+PR+E R +I SIY+ + S
Sbjct: 168 THALEQCLHKGVPRVETRFFISSIYDKEQS 197
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1n1ba2 328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2 328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_ 311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 98.23
d1di1a_ 300 Aristolochene synthase {Fungus (Penicillium roquef 96.53
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3.4e-70  Score=498.58  Aligned_cols=196  Identities=44%  Similarity=0.811  Sum_probs=183.7

Q ss_pred             CCccccccccCCcccchHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhcc
Q 018074           29 IWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHV  108 (361)
Q Consensus        29 iW~~~fl~~~~~~~~~~~~~~~~~e~LkeeVk~ml~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~  108 (361)
                      +|||+||++.++ .+..+.+.+++++||+|||+||.+   ...++.++|+|||+||||||+|||++||+++|++||+.+.
T Consensus         1 iWgd~Fl~~~~~-~~~~~~~~~~~e~Lk~eVr~ml~~---~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~   76 (197)
T d5easa1           1 LWGDQFLSFSID-NQVAEKYAQEIEALKEQTRSMLLA---TGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS   76 (197)
T ss_dssp             CCGGGGSCCCCC-HHHHHHHHHHHHHHHHHHHHHHTC---TTCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCC
T ss_pred             CCCCcccCCCCC-chhHHHHHHHHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence            799999997554 455788999999999999999986   3568999999999999999999999999999999999864


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHhhhcCccccccccccccccccccccccchhhHHHHHHHhhhhccCCCchHHHHHHHH
Q 018074          109 NGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEF  188 (361)
Q Consensus       109 ~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~F  188 (361)
                               ..+||++|||+|||||||||+||||||++|+|++|+|++++++|++|||+||||||++++||+|||+|+.|
T Consensus        77 ---------~~~dl~~~AL~FRLLRqhGy~Vs~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~F  147 (197)
T d5easa1          77 ---------NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAF  147 (197)
T ss_dssp             ---------CCCSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHH
T ss_pred             ---------CCCcHHHHHHHHHHHHHcCcccCHHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence                     24699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHhhcCCCchHHHHHHhccCCccCCcchhHHhhhHH-hhhcCCc
Q 018074          189 SRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNS  237 (361)
Q Consensus       189 t~~~L~~~~~~~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~-~Y~~~~~  237 (361)
                      |++||++.+++++++|+.+|.|||++|+||++|||||||||+ +|+++++
T Consensus       148 t~~~L~~~~~~~~~~l~~~V~~aL~~P~h~~l~rleaR~yI~~~Ye~e~s  197 (197)
T d5easa1         148 STIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS  197 (197)
T ss_dssp             HHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTT
T ss_pred             HHHHHHHHHhhcCccHHHHHHHHhCCCccCCCcHHHHHHHHHHHhcccCC
Confidence            999999999999999999999999999999999999999995 7988753
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure