Citrus Sinensis ID: 018085

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEQEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAEPSDPEPMIES
ccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEEEcHHHHHHHHHHHHcccccEEEEEEEEEEEccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEcccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
ccHHHHHHHHHHHcccEEccccccccccccccHHHHHHccHHHHHHHHccccccccccccHEEEHHHHHHHHHHHHHcccccEEEEEHEcccccccEEEEEEEEEcccccccEEEccHHHHHHHHHHHHHHHHHcccccHEEEEEcccccccEEEcccEccHHHHHHHccccEEEEEEcccEEEEccEEEEEcEEEcccccccccccccccccccccHHHcccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
MDSSIAQKTWELENnivsmetpptnstadtsasdaiffydegaqtkfqqekpwvndphyfkRVKISALALLKMVVHARSGGTIEVMGlmqgktdgdAIIVMDAfalpvegtetrVNAQADAYEYMVDYSQTNKQAGRLENAVGwyhshpgygcwlsgIDVSTQMLNQQFqepflavvidptrtvsagkveigafrtypegykppdepiseyqtiplnkiedfgvhckqyyslDITYFKSSLDCHLLDLLWNKYWvntlssspllgngdyvAGQISDLAEKLEQAENqlshsrygpliappprrkeqedsqLAKITRDSAKITVEQVHGLMSQVIKDILFNSvrqstkthaepsdpepmies
MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFqqekpwvndpHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSagkveigafrtypegykppdePISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLShsrygpliappprrkeqedSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSvrqstkthaepsdpepmies
MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEQEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAEPSDPEPMIES
**********************************AIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK****PISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQIS********************************************KITVEQVHGLMSQVIKDILFNS********************
*****AQ***************************************************YFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG******************IEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLS**P******YVAGQISD*********************************************TVEQVHGLMSQVIKDILF**********************
MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPP************KITRDSAKITVEQVHGLMSQVIKDILFNSVR******************
*****AQKTWELENNIVSMETPPTNST*DTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHS*********PRRKEQEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV*******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEQEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAEPSDPEPMIES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q9FVU9358 COP9 signalosome complex yes no 0.969 0.977 0.815 1e-167
Q8LAZ7357 COP9 signalosome complex no no 0.975 0.985 0.818 1e-166
Q54PF3332 COP9 signalosome complex yes no 0.894 0.972 0.663 1e-133
Q6P635334 COP9 signalosome complex yes no 0.903 0.976 0.679 1e-129
Q9XZ58327 COP9 signalosome complex yes no 0.894 0.987 0.660 1e-129
Q6PC30334 COP9 signalosome complex yes no 0.911 0.985 0.679 1e-129
Q6GLM9332 COP9 signalosome complex N/A no 0.903 0.981 0.676 1e-129
Q92905334 COP9 signalosome complex yes no 0.911 0.985 0.673 1e-128
O35864334 COP9 signalosome complex yes no 0.903 0.976 0.676 1e-128
P91001368 COP9 signalosome complex yes no 0.867 0.850 0.543 1e-108
>sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1 Back     alignment and function desciption
 Score =  587 bits (1512), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 292/358 (81%), Positives = 322/358 (89%), Gaps = 8/358 (2%)

Query: 3   SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKR 62
           S+IA+KTWELEN+I+++++P        S SD IF+YD+ +QT+FQQEKPW NDPHYFKR
Sbjct: 6   STIARKTWELENSILTVDSP-------DSTSDNIFYYDDTSQTRFQQEKPWENDPHYFKR 58

Query: 63  VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAY 122
           VKISALALLKMVVHARSGGTIE+MGLMQGKTDGD IIVMDAFALPVEGTETRVNAQ DAY
Sbjct: 59  VKISALALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVNAQDDAY 118

Query: 123 EYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTR 182
           EYMV+YSQTNK AGRLEN VGWYHSHPGYGCWLSGIDVSTQ LNQQ QEPFLAVVIDPTR
Sbjct: 119 EYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTR 178

Query: 183 TVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLD 242
           TVSAGKVEIGAFRTY +GYKPPDEP+SEYQTIPLNKIEDFGVHCKQYYSLD+TYFKSSLD
Sbjct: 179 TVSAGKVEIGAFRTYSKGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYSLDVTYFKSSLD 238

Query: 243 CHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPR 302
            HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAE+ L  SR+G ++     
Sbjct: 239 SHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESHLVQSRFGGVVPSSLH 298

Query: 303 RKEQEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS-TKTHAEPSDPEPMI 359
           +K++++SQL KITRDSAKITVEQVHGLMSQVIKD LFNS+RQS  K+  + SDP+PMI
Sbjct: 299 KKKEDESQLTKITRDSAKITVEQVHGLMSQVIKDELFNSMRQSNNKSPTDSSDPDPMI 356
Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. In the complex, it probably acts as the catalytic center that mediates the cleavage of Nedd8 from cullins. It however has no metalloprotease activity by itself and requires the other subunits of the CSN complex (By similarity). The CSN complex is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q8LAZ7|CSN5B_ARATH COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2 Back     alignment and function description
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1 Back     alignment and function description
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1 Back     alignment and function description
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q92905|CSN5_HUMAN COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4 Back     alignment and function description
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3 Back     alignment and function description
>sp|P91001|CSN5_CAEEL COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
449441990365 PREDICTED: COP9 signalosome complex subu 0.991 0.980 0.916 0.0
255574089367 jun activation domain binding protein, p 0.988 0.972 0.905 0.0
225428388360 PREDICTED: COP9 signalosome complex subu 0.972 0.975 0.899 0.0
295798058367 CSN5 protein [Solanum lycopersicum] 0.988 0.972 0.877 0.0
350538191367 JAB [Solanum lycopersicum] gi|12002865|g 0.988 0.972 0.874 0.0
224142099366 predicted protein [Populus trichocarpa] 0.988 0.975 0.875 0.0
356515527375 PREDICTED: COP9 signalosome complex subu 0.991 0.954 0.879 0.0
224121350366 predicted protein [Populus trichocarpa] 0.988 0.975 0.853 0.0
356507815374 PREDICTED: COP9 signalosome complex subu 0.991 0.957 0.878 1e-180
3320379357 putative JUN kinase activation domain bi 0.963 0.974 0.877 1e-179
>gi|449441990|ref|XP_004138765.1| PREDICTED: COP9 signalosome complex subunit 5a-like [Cucumis sativus] gi|449499546|ref|XP_004160845.1| PREDICTED: COP9 signalosome complex subunit 5a-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/359 (91%), Positives = 340/359 (94%), Gaps = 1/359 (0%)

Query: 3   SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKR 62
           S IAQKTWELENNI+S++TPPT S A  SASDAIF+YDE AQ KFQQEKPW NDPHYFKR
Sbjct: 8   SQIAQKTWELENNIISVDTPPTTSKASDSASDAIFYYDEAAQAKFQQEKPWQNDPHYFKR 67

Query: 63  VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAY 122
           VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAY
Sbjct: 68  VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAY 127

Query: 123 EYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTR 182
           EYMVDYSQTNKQAGRLEN VGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTR
Sbjct: 128 EYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTR 187

Query: 183 TVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLD 242
           TVSAGKVEIGAFRTYPEGYKPPDEP+SEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLD
Sbjct: 188 TVSAGKVEIGAFRTYPEGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLD 247

Query: 243 CHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPR 302
           CHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQ ENQL+HSR+GPLIAP  R
Sbjct: 248 CHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQVENQLAHSRFGPLIAPSQR 307

Query: 303 RKEQEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAEPSDPEPMIES 361
           +KE EDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQ  K+  E S PEPM+ES
Sbjct: 308 KKE-EDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQPNKSRPESSSPEPMVES 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574089|ref|XP_002527960.1| jun activation domain binding protein, putative [Ricinus communis] gi|223532586|gb|EEF34372.1| jun activation domain binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225428388|ref|XP_002283561.1| PREDICTED: COP9 signalosome complex subunit 5a-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|295798058|emb|CBL87025.1| CSN5 protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|350538191|ref|NP_001234331.1| JAB [Solanum lycopersicum] gi|12002865|gb|AAG43411.1| JAB [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224142099|ref|XP_002324396.1| predicted protein [Populus trichocarpa] gi|222865830|gb|EEF02961.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515527|ref|XP_003526451.1| PREDICTED: COP9 signalosome complex subunit 5a-like [Glycine max] Back     alignment and taxonomy information
>gi|224121350|ref|XP_002330805.1| predicted protein [Populus trichocarpa] gi|222872607|gb|EEF09738.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507815|ref|XP_003522659.1| PREDICTED: COP9 signalosome complex subunit 5a-like [Glycine max] Back     alignment and taxonomy information
>gi|3320379|gb|AAC26484.1| putative JUN kinase activation domain binding protein [Medicago sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2032288358 CSN5B "COP9-signalosome 5B" [A 0.969 0.977 0.815 5.5e-157
TAIR|locus:2017764357 CSN5A "COP9 signalosome 5A" [A 0.975 0.985 0.818 1.4e-156
ZFIN|ZDB-GENE-040426-1686334 cops5 "COP9 constitutive photo 0.911 0.985 0.682 5.1e-122
UNIPROTKB|Q5ZLC3338 COPS5 "Uncharacterized protein 0.903 0.964 0.679 1.3e-121
UNIPROTKB|E2QWE0334 COPS5 "Uncharacterized protein 0.911 0.985 0.673 1.3e-121
UNIPROTKB|F1MBP8334 COPS5 "Uncharacterized protein 0.911 0.985 0.673 1.7e-121
UNIPROTKB|Q92905334 COPS5 "COP9 signalosome comple 0.911 0.985 0.673 1.7e-121
UNIPROTKB|F2Z540334 COPS5 "Uncharacterized protein 0.911 0.985 0.673 1.7e-121
MGI|MGI:1349415334 Cops5 "COP9 (constitutive phot 0.903 0.976 0.676 2.2e-121
RGD|1310301334 Cops5 "COP9 signalosome subuni 0.903 0.976 0.676 2.2e-121
TAIR|locus:2032288 CSN5B "COP9-signalosome 5B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1530 (543.6 bits), Expect = 5.5e-157, P = 5.5e-157
 Identities = 292/358 (81%), Positives = 322/358 (89%)

Query:     3 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKR 62
             S+IA+KTWELEN+I+++++P        S SD IF+YD+ +QT+FQQEKPW NDPHYFKR
Sbjct:     6 STIARKTWELENSILTVDSPD-------STSDNIFYYDDTSQTRFQQEKPWENDPHYFKR 58

Query:    63 VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAY 122
             VKISALALLKMVVHARSGGTIE+MGLMQGKTDGD IIVMDAFALPVEGTETRVNAQ DAY
Sbjct:    59 VKISALALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVNAQDDAY 118

Query:   123 EYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTR 182
             EYMV+YSQTNK AGRLEN VGWYHSHPGYGCWLSGIDVSTQ LNQQ QEPFLAVVIDPTR
Sbjct:   119 EYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTR 178

Query:   183 TVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLD 242
             TVSAGKVEIGAFRTY +GYKPPDEP+SEYQTIPLNKIEDFGVHCKQYYSLD+TYFKSSLD
Sbjct:   179 TVSAGKVEIGAFRTYSKGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYSLDVTYFKSSLD 238

Query:   243 CHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPR 302
              HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAE+ L  SR+G ++     
Sbjct:   239 SHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESHLVQSRFGGVVPSSLH 298

Query:   303 RKEQEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQST-KTHAEPSDPEPMI 359
             +K++++SQL KITRDSAKITVEQVHGLMSQVIKD LFNS+RQS  K+  + SDP+PMI
Sbjct:   299 KKKEDESQLTKITRDSAKITVEQVHGLMSQVIKDELFNSMRQSNNKSPTDSSDPDPMI 356
GO:0005634 "nucleus" evidence=ISM
GO:0008180 "signalosome" evidence=TAS;IPI
GO:0009640 "photomorphogenesis" evidence=RCA;TAS
GO:0000338 "protein deneddylation" evidence=IGI
GO:0009733 "response to auxin stimulus" evidence=IGI
GO:0010100 "negative regulation of photomorphogenesis" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
GO:0010387 "signalosome assembly" evidence=IMP
GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IMP
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0045732 "positive regulation of protein catabolic process" evidence=IMP
GO:2000082 "regulation of L-ascorbic acid biosynthetic process" evidence=IMP
TAIR|locus:2017764 CSN5A "COP9 signalosome 5A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1686 cops5 "COP9 constitutive photomorphogenic homolog subunit 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLC3 COPS5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWE0 COPS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBP8 COPS5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q92905 COPS5 "COP9 signalosome complex subunit 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z540 COPS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1349415 Cops5 "COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310301 Cops5 "COP9 signalosome subunit 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6PC30CSN5_DANRE3, ., 4, ., -, ., -0.67930.91130.9850yesno
Q9FVU9CSN5A_ARATH3, ., 4, ., -, ., -0.81560.96950.9776yesno
Q92905CSN5_HUMAN3, ., 4, ., -, ., -0.67340.91130.9850yesno
Q6C703CSN5_YARLI3, ., 4, ., -, ., -0.55590.75060.7655yesno
Q4IJM4CSN5_GIBZE3, ., 4, ., -, ., -0.51770.90300.9588yesno
P91001CSN5_CAEEL3, ., 4, ., -, ., -0.54300.86700.8505yesno
Q5BBF1CSN5_EMENI3, ., 4, ., -, ., -0.52920.88080.9492yesno
O35864CSN5_MOUSE3, ., 4, ., -, ., -0.67640.90300.9760yesno
Q4WZP2CSN5_ASPFU3, ., 4, ., -, ., -0.54720.90300.9760yesno
Q54PF3CSN5_DICDI3, ., 4, ., -, ., -0.66370.89470.9728yesno
P0CQ24CSN5_CRYNJ3, ., 4, ., -, ., -0.50820.90850.8840yesno
P0CQ25CSN5_CRYNB3, ., 4, ., -, ., -0.50820.90850.8840N/Ano
Q6P635CSN5_XENTR3, ., 4, ., -, ., -0.67940.90300.9760yesno
Q8LAZ7CSN5B_ARATH3, ., 4, ., -, ., -0.81890.97500.9859nono
Q6GLM9CSN5_XENLA3, ., 4, ., -, ., -0.67640.90300.9819N/Ano
Q9XZ58CSN5_DROME3, ., 4, ., -, ., -0.66080.89470.9877yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.19LOW CONFIDENCE prediction!
3rd Layer3.4.17.n1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
cd08069268 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p 1e-157
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 3e-40
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 4e-39
cd08058119 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) 5e-24
COG1310134 COG1310, COG1310, Predicted metal-dependent protea 2e-17
cd08057157 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal ( 5e-11
cd08068244 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC3 1e-09
cd08065266 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) 8e-09
cd08067187 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histo 3e-08
cd07767116 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain 7e-06
cd08066173 cd08066, MPN_AMSH_like, Mov34/MPN/PAD-1 family 2e-04
pfam1446498 pfam14464, Prok-JAB, Prokaryotic homologs of the J 4e-04
>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information 
 Score =  442 bits (1138), Expect = e-157
 Identities = 171/277 (61%), Positives = 193/277 (69%), Gaps = 12/277 (4%)

Query: 52  PWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGT 111
           PW  DP YF++V IS+LALLKM+ HAR+GG IEVMGLM GK D   IIV+D FALPVEGT
Sbjct: 1   PWKPDPDYFEKVYISSLALLKMLKHARAGGPIEVMGLMLGKVDDYTIIVVDVFALPVEGT 60

Query: 112 ETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQE 171
           ETRVNAQ +  EYMV Y +  KQ GR EN VGWYHSHPGYGCWLSGIDV+TQ LNQQ Q+
Sbjct: 61  ETRVNAQDEFQEYMVQY-EMLKQTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQLQD 119

Query: 172 PFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKP--PDEPISEYQTIPLNKIEDFGVHCKQY 229
           PF+AVV+DP R++  GKV IGAFRT P GYKP  P +  S    +P  KIEDFG H KQY
Sbjct: 120 PFVAVVVDPIRSLVKGKVVIGAFRTIPPGYKPLEPRQTTSNIGHLPKPKIEDFGGHNKQY 179

Query: 230 YSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNG-DYVAGQISDLAEKLEQAENQL 288
           YSL I YFKSSLD  LL  LWNKYWVNTLS SPLL N  +Y   QI DLAEKLE+AE Q 
Sbjct: 180 YSLPIEYFKSSLDRKLLLNLWNKYWVNTLSLSPLLENSNEYTIKQILDLAEKLEKAEQQE 239

Query: 289 SHSRYGPLIAPPPRRKEQEDSQLAKITRDSAKITVEQ 325
                                +L K  RDS+KI +E+
Sbjct: 240 ERL-------TGEELDIANVGKLDKA-RDSSKIHLEE 268

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations in Rpn11 cause cell cycle and mitochondrial defects, temperature sensitivity and sensitivity to DNA damaging reagents such as UV. It has been shown that the C-terminal region of Rpn11 is involved in the regulation of the mitochondrial fission and tubulation processes. CSN5, one of the eight subunits of CSN, is critical for nuclear export and the degradation of several tumor suppressor proteins, including p53, p27, and Smad4. Its MPN+ domain is critical for the physical interaction of RUNX3 and Jab1. It has been suggested that the direct interaction of CSN5/JAB1 with p27 provides p27 with a leucine-rich nuclear export signal (NES), which is required for binding to chromosomal region maintenance 1 (CRM1), and facilitates nuclear export. The over-expression of CSN5/JAB1 also has been implicated in cancer initiation and progression, including cancer of the lung, pancreas, mouth, thyroid, and breast, suggesting that the oncogenic activity of CSN5 is associated with the down-regulation of RUNX3. Length = 268
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|163689 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|224229 COG1310, COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|163699 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>gnl|CDD|163698 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>gnl|CDD|163697 cd08066, MPN_AMSH_like, Mov34/MPN/PAD-1 family Back     alignment and domain information
>gnl|CDD|222766 pfam14464, Prok-JAB, Prokaryotic homologs of the JAB domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
KOG1554347 consensus COP9 signalosome, subunit CSN5 [Posttran 100.0
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 100.0
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 100.0
KOG1560339 consensus Translation initiation factor 3, subunit 100.0
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 100.0
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 99.97
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 99.96
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 99.96
cd08068244 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun 99.96
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 99.95
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 99.94
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 99.94
KOG1555316 consensus 26S proteasome regulatory complex, subun 99.93
PLN03246303 26S proteasome regulatory subunit; Provisional 99.93
KOG2975288 consensus Translation initiation factor 3, subunit 99.92
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 99.92
cd08063288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.91
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 99.89
cd08070128 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit 99.82
KOG1556309 consensus 26S proteasome regulatory complex, subun 99.77
COG1310134 Predicted metal-dependent protease of the PAD1/JAB 99.6
cd08072117 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 99.59
cd08073108 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains 99.51
KOG2880424 consensus SMAD6 interacting protein AMSH, contains 99.42
cd08060182 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family 99.34
PF14464104 Prok-JAB: Prokaryotic homologs of the JAB domain; 99.33
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.15
cd08059101 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains 99.02
TIGR02256131 ICE_VC0181 integrative and conjugative element pro 98.96
TIGR03735192 PRTRC_A PRTRC system protein A. A novel genetic sy 98.93
KOG3050299 consensus COP9 signalosome, subunit CSN6 [Posttran 98.48
cd08061274 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein l 98.32
PF03665196 UPF0172: Uncharacterised protein family (UPF0172); 98.3
PF05021306 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 ge 97.41
KOG3289199 consensus Uncharacterized conserved protein encode 97.39
KOG17952321 consensus U5 snRNP spliceosome subunit [RNA proces 84.96
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3e-95  Score=682.21  Aligned_cols=342  Identities=73%  Similarity=1.133  Sum_probs=324.8

Q ss_pred             ChhHHhhhhhhcccceecCCCCCCCCCCCCCCcccccCChHHhhHHHhcCCCCCCCCCeeEEEECHHHHHHHHHHHhcCC
Q 018085            2 DSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGG   81 (361)
Q Consensus         2 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~pw~~~~~~~~~V~Is~~vLlkIl~Ha~~~~   81 (361)
                      ++.+|+++||++|||+.+++.           |.||+||.+.+.++..++||..||++|+.|+|++++|+||++||++|+
T Consensus         5 ~s~~~~k~we~en~~~~~~~~-----------deif~yd~~sq~~~~~~kpw~~Dp~~fk~vkISalAllKm~~hA~~Gg   73 (347)
T KOG1554|consen    5 SSYTAQKTWELENNIQSVESE-----------DEIFRYDQKSQRKIILEKPWSTDPHYFKHVKISALALLKMVMHARSGG   73 (347)
T ss_pred             cccchhHHHHHhhhhccCccc-----------hhhhhcCHHHHHHHHhcCcccCCCchhhhhhhHHHHHHHHHHHHhcCC
Confidence            556899999999999999875           999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEeceeecCCeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCccCHHhHH
Q 018085           82 TIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVS  161 (361)
Q Consensus        82 p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~v~~~e~vVGWYHSHP~~~~~pS~~DV~  161 (361)
                      +.||||+|+|++++++++|+|||++|++|||+|||++.+++|||.++.+.++.+||.+++||||||||+||||+|++||.
T Consensus        74 nlEiMGlm~Gkv~g~t~IvmD~FaLPVeGTETRVNAq~~AyEYmv~Y~e~~k~~gr~envVGWyHSHPgYgCWLSgIDVs  153 (347)
T KOG1554|consen   74 NLEIMGLMQGKVDGDTIIVMDSFALPVEGTETRVNAQAEAYEYMVQYIEEAKNVGRLENVVGWYHSHPGYGCWLSGIDVS  153 (347)
T ss_pred             CeEEEeeecccccCCeEEEEeccccccccccceechHHHHHHHHHHHHHHHHHhhhhhceeeeeecCCCCCccccCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCCCCCCCCCcccccChhhhhhhCCccceeEEeeEEEecChh
Q 018085          162 TQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSL  241 (361)
Q Consensus       162 tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~~~~~~~~~~~e~~~ip~~ki~d~g~~~~~fyeLpV~i~~s~l  241 (361)
                      ||..+|++++|||++||||.||++.|++.|+|||++|.+|+++.+++++|+.+|+.||+|||+||.+||+|+|++|+|.+
T Consensus       154 TQ~lNQ~fQePfvAvViDP~Rtlsagkv~iGAFRTyp~gyk~~d~~~seyqtipl~kied~gvHck~yysl~isyfks~l  233 (347)
T KOG1554|consen  154 TQMLNQRFQEPFVAVVIDPTRTLSAGKVNIGAFRTYPKGYKPPDEPPSEYQTIPLNKIEDFGVHCKQYYSLEISYFKSSL  233 (347)
T ss_pred             HHHHhhhhcCCeEEEEecCccccccCceeeceeecccCCCCCCCCCchhhhccchhhhhhcccceEEeeccchhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccccccCCCcCccChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcchhhhHHHHHHhhHhHH
Q 018085          242 DCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEQEDSQLAKITRDSAKI  321 (361)
Q Consensus       242 ~~~~L~~L~~~~w~~~Ls~s~~l~n~~~l~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (361)
                      +.++|+.||++||+++|+++|+++|.+|+.+||.||++|+.+.+.++.++.      ....++-.++.+|+|+++|++++
T Consensus       234 d~kll~~Lwnkywv~Tlsss~ll~N~dy~~~qi~d~~ekl~q~~~~l~~s~------~~~d~~~ed~~~l~k~~~Ds~~~  307 (347)
T KOG1554|consen  234 DMKLLELLWNKYWVRTLSSSPLLKNIDYLNGQIRDLSEKLEQREDSLETSD------NTHDRKSEDENLLAKATRDSSKC  307 (347)
T ss_pred             hHHHHHHHHhhhhhcccccccccccchhhcchhhhHHHHHHhhhhhcccCc------ccccccccchhhhhhhhhhhhhh
Confidence            999999999999999999999999999999999999999999999987651      11222224567799999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCC
Q 018085          322 TVEQVHGLMSQVIKDILFNSVRQSTKTHAEPSDPEPMIE  360 (361)
Q Consensus       322 ~~e~~~g~~~~~~k~~~f~~~~~~~~~~~~~~~~~~~~~  360 (361)
                      ..|+.||+|+|++|+.||+....+++...++..+.+|+.
T Consensus       308 ~~e~~~gl~s~vvkd~lf~~~~~~~k~~~~s~~~~~di~  346 (347)
T KOG1554|consen  308 TNELIHGLMSQVVKDKLFNDNFHSSKRMNSSQERCHDIG  346 (347)
T ss_pred             hhcchhHHHHHHHHHHHHHhhccccCCCCcCCCCCcccc
Confidence            999999999999999999998887788888888888764

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>KOG2975 consensus Translation initiation factor 3, subunit f (eIF-3f) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme Back     alignment and domain information
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains Back     alignment and domain information
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms] Back     alignment and domain information
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p) Back     alignment and domain information
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic Back     alignment and domain information
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family Back     alignment and domain information
>TIGR03735 PRTRC_A PRTRC system protein A Back     alignment and domain information
>KOG3050 consensus COP9 signalosome, subunit CSN6 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain Back     alignment and domain information
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function Back     alignment and domain information
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport Back     alignment and domain information
>KOG3289 consensus Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene [General function prediction only] Back     alignment and domain information
>KOG1795 consensus U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
4f7o_A257 Crystal Structure Of Csn5 Length = 257 1e-101
4b4t_V306 Near-Atomic Resolution Structural Model Of The Yeas 2e-31
4b4t_U338 Near-Atomic Resolution Structural Model Of The Yeas 4e-05
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5 Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/262 (70%), Positives = 204/262 (77%), Gaps = 11/262 (4%)
Query: 3   SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKR 62
           S  AQKTWEL NN             +  + D I+ YD+  Q +    KPW  D HYFK 
Sbjct: 6   SGXAQKTWELANN-----------XQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKY 54
Query: 63  VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAY 122
            KISALALLK V HARSGG +EV GL  GK DG+  I+ D+FALPVEGTETRVNAQA AY
Sbjct: 55  CKISALALLKXVXHARSGGNLEVXGLXLGKVDGETXIIXDSFALPVEGTETRVNAQAAAY 114
Query: 123 EYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTR 182
           EY   Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVSTQ LNQQFQEPF+AVVIDPTR
Sbjct: 115 EYXAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQXLNQQFQEPFVAVVIDPTR 174
Query: 183 TVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLD 242
           T+SAGKV +GAFRTYP+GYKPPDE  SEYQTIPLNKIEDFGVHCKQYY+L+++YFKSSLD
Sbjct: 175 TISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLD 234
Query: 243 CHLLDLLWNKYWVNTLSSSPLL 264
             LL+LLWNKYWVNTLSSS LL
Sbjct: 235 RKLLELLWNKYWVNTLSSSSLL 256
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 306 Back     alignment and structure
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 338 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 4e-50
2znr_A178 AMSH-like protease; metal binding protein, alterna 3e-43
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 3e-40
2kks_A146 Uncharacterized protein; NESG, structural genomics 8e-29
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 2e-27
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 1e-26
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure
 Score =  166 bits (420), Expect = 4e-50
 Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 15/171 (8%)

Query: 39  YDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSG--GTIEVMGLMQGKTDGD 96
            D   +         +      + V +      + +  A +     +   G++ GK   +
Sbjct: 20  VDRSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRN 79

Query: 97  AIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLS 156
              +               N + +   +++       Q  +    +GW H+HP    +LS
Sbjct: 80  EFTITHVLIPKQSAGSDYCNTENEEELFLI-------QDQQGLITLGWIHTHPTQTAFLS 132

Query: 157 GIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEP 207
            +D+ T    Q      +A+V  P         E G F+    G +     
Sbjct: 133 SVDLHTHCSYQMMLPESVAIVCSPKFQ------ETGFFKLTDHGLEEISSC 177
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Length = 146 Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Length = 153 Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141 Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 100.0
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 100.0
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 99.96
2znr_A178 AMSH-like protease; metal binding protein, alterna 99.95
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 99.94
4b4t_U338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 99.93
2kks_A146 Uncharacterized protein; NESG, structural genomics 99.9
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 99.89
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 99.76
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 99.23
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 99.18
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 98.52
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.9e-53  Score=413.17  Aligned_cols=242  Identities=34%  Similarity=0.516  Sum_probs=179.5

Q ss_pred             hhHHHhcCCCCCCC---CCeeEEEECHHHHHHHHHHHhcCCCceeEEEeceee-cCCeEEEEEEEeCCCccCCccccccc
Q 018085           44 QTKFQQEKPWVNDP---HYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKT-DGDAIIVMDAFALPVEGTETRVNAQA  119 (361)
Q Consensus        44 ~~~~~~~~pw~~~~---~~~~~V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~-~~~tl~Vtd~F~lP~~~te~rv~~~~  119 (361)
                      |+.+...++|..++   +++++|+|+++||+||++||+++.|.||||+|+|.+ ++++++|+||||+|++++++++++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d   84 (306)
T 4b4t_V            5 QRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVD   84 (306)
T ss_dssp             ------------CCCCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCC
T ss_pred             HHhhhccCCCCCCCCCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCC
Confidence            34456677777755   479999999999999999999999999999999986 55689999999999999999987654


Q ss_pred             ChHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccC
Q 018085          120 DAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE  199 (361)
Q Consensus       120 e~~eY~~~ml~~~r~v~~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~  199 (361)
                        .+|+.+|+++++++|+++++||||||||+++||||++||++|+.||.+.+++|+|||||.++. +|++.|+|||++|.
T Consensus        85 --~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~  161 (306)
T 4b4t_V           85 --DVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDT  161 (306)
T ss_dssp             --HHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHH
T ss_pred             --HHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCc
Confidence              368999999999999999999999999999999999999999999999999999999999986 79999999999987


Q ss_pred             CCCCCC----CCCCcccccChhhhhhhCC-ccceeEEeeEEEecChhHHHHHHHHhccccccccCCCcCccChHHHHHHH
Q 018085          200 GYKPPD----EPISEYQTIPLNKIEDFGV-HCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQI  274 (361)
Q Consensus       200 ~~~~~~----~~~~e~~~ip~~ki~d~g~-~~~~fyeLpV~i~~s~l~~~~L~~L~~~~w~~~Ls~s~~l~n~~~l~~~i  274 (361)
                      ++....    ...+.+..+|..++++++. +++.||+|||+++++++++.+|..||+++|..+|+.+++..+.++..+++
T Consensus       162 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i  241 (306)
T 4b4t_V          162 GALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAAT  241 (306)
T ss_dssp             HHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHH
T ss_pred             cccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence            653221    2234456678888888885 35779999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHHHHhc
Q 018085          275 SDLAEKLEQAENQL  288 (361)
Q Consensus       275 ~dl~~~~~~~~~~~  288 (361)
                      .++.+...++...+
T Consensus       242 ~~m~~~~~~y~k~v  255 (306)
T 4b4t_V          242 KSMVKIAEQYSKRI  255 (306)
T ss_dssp             HHHSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877777666554
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d1oi0a_121 c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeo 2e-12
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 17/102 (16%)

Query: 62  RVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADA 121
            +KIS   L  ++  A+S    E + L+ G  D    ++ +   LP            D 
Sbjct: 3   SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVSAVIHLDM 58

Query: 122 YEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQ 163
               +                G  HSHP   C  S  D+S  
Sbjct: 59  LPIGMKV-------------FGTVHSHPSPSCRPSEEDLSLF 87

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d1oi0a_121 Hypothetical protein AF2198 {Archaeon Archaeoglobu 99.72
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.72  E-value=7.4e-18  Score=140.73  Aligned_cols=108  Identities=20%  Similarity=0.204  Sum_probs=80.3

Q ss_pred             EEEECHHHHHHHHHHHhcCCCceeEEEeceeecCCeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHHhCCCCce
Q 018085           62 RVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENA  141 (361)
Q Consensus        62 ~V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~v~~~e~v  141 (361)
                      +++|+..++.+|+.||++++|.|+||+|+|..+    .|+..+++|+...+...       .+..+|    +  .+++.+
T Consensus         3 ~l~I~~~~l~~i~~hA~~~~P~E~cGlL~G~~~----~i~~~~~~~n~~~~~~~-------~~~~~~----~--~~~~~i   65 (121)
T d1oi0a_           3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVSA-------VIHLDM----L--PIGMKV   65 (121)
T ss_dssp             SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECCCCC--------------------------CCCEE
T ss_pred             eEEECHHHHHHHHHHHHhcCCceeEEEEEecCC----cEEEEEEcCCCCCCccc-------ccccch----h--hcCCeE
Confidence            579999999999999999999999999999643    57888999986433211       111222    1  257899


Q ss_pred             EEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEE
Q 018085          142 VGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR  195 (361)
Q Consensus       142 VGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFR  195 (361)
                      ||||||||+.+++||..|+.++.     ..+.+++|+++-.    +.-+++||+
T Consensus        66 vgi~HSHP~~~a~PS~~D~~~~~-----~~g~~~~Ivs~p~----~~~~~~~~~  110 (121)
T d1oi0a_          66 FGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY----DENSWKCYN  110 (121)
T ss_dssp             EEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC----CTTCEEEEE
T ss_pred             EEEEEecCCCCCCcCHHHHHhhh-----ccCCEEEEEeCCC----CCCCEEEEe
Confidence            99999999999999999998753     3578999999743    223678886