Citrus Sinensis ID: 018089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ
Secondary Structure (PSIPRED)
ccccEEEEEEEEccEEEcEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccEEEcccEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEccccccccccccEEEEEEEcHHHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEccccccEccccccEccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHcc
Coil and Loop (DISEMBL)
marprcfldISIGVELEGRIIVEIYNDVIPKTAENFRALCtgekgigpntgvplhykgvRFHRVIKGFMiqggdisagdgtggesiyglkfedenfeLKHERKGMLSmanagpntngsqffitttrtshldgkhVVFGRVIKGMGVVRSIEHvmtgdndcpiadvtitdcgeipegaddgisnffndgdsypdwpadldqtpnELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICwekegidegkssslrktksqiftnssacklKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALklepndggiKKELAVAKKKIHERREQEKKQYRKMFQ
Flexible Loop (DISEMBL)
marprcfldisigvelegRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHvmtgdndcpiaDVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWekegidegkssslrktksqiftnssacklkLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAlklepndggikkELAVAKKKiherreqekkqyrkmfq
Low Complexity Region (SEG)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQggdisagdgtggESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACklklgdlkgalldTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ
Disordered region (IsUnstruct)
****RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF*********************SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI**************IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE***************************************
Disordered Region (DISOPRED)
*ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRS**************DVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV**************QYRKMFQ
Disordered Region (DISEMBL)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV*********************
Disordered Region (DISPRO)
*ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK*FQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q9C566	361	Peptidyl-prolyl cis-trans	yes	no	0.997	0.997	0.813	1e-177
Q6DGG0	370	Peptidyl-prolyl cis-trans	yes	no	0.980	0.956	0.498	9e-95
Q9CR16	370	Peptidyl-prolyl cis-trans	yes	no	0.980	0.956	0.495	3e-94
P26882	370	Peptidyl-prolyl cis-trans	yes	no	0.986	0.962	0.487	5e-94
Q08752	370	Peptidyl-prolyl cis-trans	yes	no	0.986	0.962	0.490	1e-92
P0C1I1	364	Peptidyl-prolyl cis-trans	N/A	no	0.977	0.969	0.508	2e-89
Q9P3X9	375	41 kDa peptidyl-prolyl ci	N/A	no	0.983	0.946	0.487	3e-84
Q6CBP4	367	Peptidyl-prolyl cis-trans	yes	no	0.991	0.975	0.450	3e-82
Q5B4E7	372	Peptidyl-prolyl cis-trans	yes	no	0.972	0.943	0.487	5e-82
Q5U8Z7	371	Peptidyl-prolyl cis-trans	N/A	no	0.983	0.956	0.464	6e-82

>sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1

 Score =  621 bits (1601), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/360 (81%), Positives = 317/360 (88%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R +CF+DISIG ELEGRI++E+Y+DV+PKTAENFR LCTGEKG+GPNTGVPLHYKG R
Sbjct: 1   MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISA DGTGGESIYGLKF+DENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFGRV KGMGVVRSIEHV   +  CP  DV I DCGEIPEGADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I +FF DGD YPDWP DL+++P ELSWWM  VD +K  GNEH+KKQDYKMALRKYRKALR
Sbjct: 181 ICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  S++LRKTKSQIFTNS+ACKLK GD KGALLDTEFAMRD D+NVKA
Sbjct: 241 YLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAYMALN+VDAA ES EKAL+ EPND GIKKE A   KKI  R  +EKKQYRKMF
Sbjct: 301 LFRQGQAYMALNNVDAAAESLEKALQFEPNDAGIKKEYAAVMKKIAFRDNEEKKQYRKMF 360

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in promoting the expression of the juvenile phase of vegetative development, and, to a lower extent, in regulating the positioning of floral buds, floral morphogenesis and the expression of HSPs.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q6DGG0|PPID_RAT Peptidyl-prolyl cis-trans isomerase D OS=Rattus norvegicus GN=Ppid PE=1 SV=3

 Score =  347 bits (890), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 178/357 (49%), Positives = 235/357 (65%), Gaps = 3/357 (0%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG GP TG PLH+KG  FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
           T  T HLDGKHVVFG+VIKG+GV R +E+V   + + P     I +CGE+ EG + GI  
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGLGVARMLENVEV-NGEKPAKLCVIAECGELKEGDEWGIFP 194

Query: 184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
               GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRYLD
Sbjct: 195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLD 254

Query: 244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
               K  I++   S L+        N  ACKLK+ + +GA+     A+     N KAL+R
Sbjct: 255 S--SKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           + Q +  L + D A+   +KA ++ P D  I+ EL   K+ I  ++++EK  Y KMF
Sbjct: 313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9CR16|PPID_MOUSE Peptidyl-prolyl cis-trans isomerase D OS=Mus musculus GN=Ppid PE=1 SV=3

 Score =  345 bits (885), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 177/357 (49%), Positives = 235/357 (65%), Gaps = 3/357 (0%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG G  TG PLH+KG  FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
           T  T HLDGKHVVFG+VIKG+GV R++E+V   + + P     I +CGE+ EG D GI  
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKPAKLCVIAECGELKEGDDWGIFP 194

Query: 184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
               GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY+D
Sbjct: 195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVD 254

Query: 244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
               K  I++   S L+        N  ACKLK+ + +GA+     A+     N KAL+R
Sbjct: 255 S--SKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           + Q +  L + D A+   +KA ++ P D  I+ EL   K+ I  ++++EK  Y KMF
Sbjct: 313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P26882|PPID_BOVIN Peptidyl-prolyl cis-trans isomerase D OS=Bos taurus GN=PPID PE=1 SV=6

 Score =  344 bits (883), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 175/359 (48%), Positives = 235/359 (65%), Gaps = 3/359 (0%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192

Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252

Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301
           ++    +   ++   + L+        N  ACKLK+ D +GA+     A+     N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           +R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q08752|PPID_HUMAN Peptidyl-prolyl cis-trans isomerase D OS=Homo sapiens GN=PPID PE=1 SV=3

 Score =  340 bits (871), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/359 (49%), Positives = 233/359 (64%), Gaps = 3/359 (0%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIG  TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFF 133

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKG+GV R +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEV-KGEKPAKLCVIAECGELKEGDDGGI 192

Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY + LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLRY 252

Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301
           +D    K  I+    + L+        N  ACKLK+ + +GA+     A+     N KAL
Sbjct: 253 VD--SSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKAL 310

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           +R+ Q +  L + D A+   +KA  + P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I1|PPID_RHIO9 Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp12 PE=3 SV=1

 Score =  329 bits (844), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/370 (50%), Positives = 241/370 (65%), Gaps = 17/370 (4%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+ PR + DI+IG + EGRI+ E++ D++PKTAENFRALCTGEKG G  +G PL Y+G  
Sbjct: 1   MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEG-KSGKPLSYQGSL 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD +AG+GTGGESIYG KFEDENF LKHE+  +LSMANAGP TNGSQF
Sbjct: 60  FHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+V+KG  VVR++E++ T  +D P+ D  I  CGE+ EG DDG
Sbjct: 120 FITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETV-SDRPVEDAVIAKCGELAEGEDDG 178

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I     DGD Y ++P D  + P E +  +     +K  GN ++KK D+  A +KY KA+R
Sbjct: 179 IRA-SEDGDVYEEYPDD-HEGPKEPNDVLQIATHLKDIGNTYFKKGDHANAAKKYLKAIR 236

Query: 241 YLDICWEKEGIDEGKSSSLR----KTKSQIFTNSSACKLKLGD------LKGALLDTEFA 290
           YL+   EK   DE     L       K   + N S C LKLG+      +   +L+ +  
Sbjct: 237 YLN---EKPAFDENDPKELEGKFAAIKIPCYLNRSMCALKLGEYSECVKVTTTVLEYDSK 293

Query: 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350
                D  KA FR+G A M   D + A+E FEKA + +P D GIKKELA AK K+  +++
Sbjct: 294 YLKPTDITKAYFRRGSAKMNTRDFEGAIEDFEKAHEKDPEDAGIKKELANAKAKLAAKKQ 353

Query: 351 QEKKQYRKMF 360
           +EK  Y KMF
Sbjct: 354 KEKSAYAKMF 363

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9P3X9|PPID_NEUCR 41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-41 PE=1 SV=1

 Score =  311 bits (798), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 180/369 (48%), Positives = 226/369 (61%), Gaps = 14/369 (3%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           AR R F DI+IG +  GRI+ E+YND++PKTAENFRALCTGEKG+G   G PLHYKG  F
Sbjct: 10  ARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVG-KLGKPLHYKGSTF 68

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVIK FMIQGGD +AG+GTGGESIYG KFEDENF+LKH+R  +LSMANAGP TNGSQFF
Sbjct: 69  HRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFF 128

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI----PEGA 177
           +TT  T HLDGKHVVFG V+ G  VVR IE++ T   D P  D  I DCGE+       A
Sbjct: 129 VTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKT-QGDKPTKDAVIADCGELSGDAAVSA 187

Query: 178 DDGISNFFNDGDSYPDWPAD--LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKY 235
           D   ++ +  GD Y D+P D   D  P   S  +      K FGN+ +K  D  +AL KY
Sbjct: 188 DTKTADAY--GDEYEDFPEDEATDGQPLSASKILKIATDCKDFGNKAFKAGDLPVALDKY 245

Query: 236 RKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--- 292
           +K LRYL+   E +         L   +  + +N++   +KL      +   + A+    
Sbjct: 246 QKGLRYLNEDPELDNEPADTKQKLDALRVSLNSNAALMNMKLSAWDECIRSADGALAVAT 305

Query: 293 -DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351
               D  KAL+R+G A + + D D+A+ S E+A KL P DG I  ELA  KK    R  +
Sbjct: 306 ISDKDRAKALYRRGYAQVRIKDEDSALTSLEEAKKLAPEDGAIVNELAAVKKAAAARMAK 365

Query: 352 EKKQYRKMF 360
           EK  Y+K F
Sbjct: 366 EKAAYKKFF 374

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6CBP4|PPID_YARLI Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CPR6 PE=3 SV=1

 Score =  305 bits (782), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 165/366 (45%), Positives = 224/366 (61%), Gaps = 8/366 (2%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  PR F +++IG +  G+I  E++ D +PKTAENFRALCTGEKG     G+PLH+KG  
Sbjct: 1   MTNPRVFFEVAIGGKTIGKIYFELFADKVPKTAENFRALCTGEKG-NTQAGIPLHFKGSS 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FM+QGGD +AG+GTGGESIYG KF DE F   H++  +LSMANAGPNTNGSQF
Sbjct: 60  FHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTT T HLD KHVVFG+++ G G+VR IE   TG+ D P   VTI DCGE+P      
Sbjct: 120 FITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGELPADFQVP 179

Query: 181 ISNFFN-DGDSYPDWPADLDQTP-NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA 238
           + N  +  GD Y D+  D D    N+ +  + A++ +K  G + +K+ + + AL+KY KA
Sbjct: 180 VGNVDDGTGDDYEDFLKDNDNVDVNDPASVLGAIEKLKSIGTKLFKEGNAEGALKKYLKA 239

Query: 239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----G 294
             YL+  +  + + E   + +   +   + N +   LK+   K A+     A+ D     
Sbjct: 240 TTYLE-DYLPDDLSEENIAKVHALRISCYLNVALMALKVNQPKVAIKAATSALDDETVAN 298

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354
            +  KALFR+G  Y AL +   A++    AL+LEP DG IK ++   K+    RRE EKK
Sbjct: 299 KEKAKALFRRGSGYAALKNETDALKDLNAALELEPADGAIKNKIEEVKQAAQRRREAEKK 358

Query: 355 QYRKMF 360
           +Y   F
Sbjct: 359 KYAGFF 364

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4E7|PPID_EMENI Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr6 PE=3 SV=1

 Score =  305 bits (780), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 182/373 (48%), Positives = 217/373 (58%), Gaps = 22/373 (5%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           RPR F DI IG +  GRI  E++NDV+PKTAENFRALCTGEKG+G   G PLH+KG  FH
Sbjct: 6   RPRVFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMG-KQGKPLHFKGSIFH 64

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD +A +GTGGESIYG KF DENFELKH+R  +LSMAN+GP TNGSQFFI
Sbjct: 65  RVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFI 124

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP----EGAD 178
           TT  T HLDGKHVVFG VI G  VVR IE++ T   D P  DVTI +CGE+     + AD
Sbjct: 125 TTVPTPHLDGKHVVFGEVINGKSVVRKIENMPT-QADKPTTDVTIAECGELTGEDYDNAD 183

Query: 179 DGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA 238
               +    GD Y D+P D                 +K FGN  +K  +  + L KY+K 
Sbjct: 184 KQTPD--ATGDPYEDFPDDHQGEELSAPVCFKIASELKNFGNTAFKNGNIALGLEKYQKG 241

Query: 239 LRYLDICWEKEGID----EGKSSSLRKTKSQIFTNSSACKLKLGDLKG-------ALLDT 287
           LRYL+   E E  D    E +  SLR T   + +NSS    KLG  K        AL   
Sbjct: 242 LRYLNEFPEPEENDPKDLEPQMKSLRFT---LHSNSSLLANKLGQFKNGKTWATYALDVA 298

Query: 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347
           + A     D  K  +R+  A   L + D A++  E+A  L P+D  I  E A  KK I  
Sbjct: 299 DAASAKDADRAKVYYRRAVAESGLKEEDEALKDLEQASTLAPSDAAIAAETARVKKAIKA 358

Query: 348 RREQEKKQYRKMF 360
           R  QEK   RK F
Sbjct: 359 REAQEKATARKFF 371

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5U8Z7|PPID_AMAMU Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1

 Score =  304 bits (779), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 172/370 (46%), Positives = 223/370 (60%), Gaps = 15/370 (4%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           RP  F DI+IG +L GR+   +Y+D++PKTAENFRALCTGEKG+G  +G PL YKG  FH
Sbjct: 4   RPIVFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLG-QSGKPLWYKGSAFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIKGFM QGGD +AG+GTGGESIYG KFEDE F + H R  +LSMANAGPNTNGSQFFI
Sbjct: 63  RVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFI 122

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI- 181
           T + T HLDGKHVVFG VIKG  VVR+IE+    + D P   V I DCG++   +DD   
Sbjct: 123 TVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQL--SSDDPFL 180

Query: 182 -SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
                 DGD Y D+P D DQ        +    +I+   N  YK+ D   AL+KY K++R
Sbjct: 181 AERTSTDGDPYEDYPDDEDQELGNPETVLQIAKTIREVANRLYKQGDISGALQKYSKSIR 240

Query: 241 YLDICWE-KEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----GDLKGALLDTEFAMR-- 292
           YLD+  E  E      +   +   + +  NS+   +++      +   A+ +T  A+   
Sbjct: 241 YLDVHQELPENSPPDLNEQYKSLLAPLLLNSALAAIRIEPHSAANAMNAVANTSRALNRL 300

Query: 293 --DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350
                D  KA +R+G A   + D   A +  + A +L P DG I  ELA   +K  E+RE
Sbjct: 301 ELSNADKAKAYYRRGLAKTIMRDEVGAEQDLKTANELLPEDGAIAAELAKIIQKKKEQRE 360

Query: 351 QEKKQYRKMF 360
           +EKK Y+KMF
Sbjct: 361 REKKAYKKMF 370

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Amanita muscaria (taxid: 41956)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
225428707	361	PREDICTED: peptidyl-prolyl cis-trans iso	1.0	1.0	0.850	0.0
255561673	361	peptidyl-prolyl cis-trans isomerase d, p	1.0	1.0	0.861	0.0
224103535	370	predicted protein [Populus trichocarpa]	1.0	0.975	0.842	0.0
356521481	361	PREDICTED: peptidyl-prolyl cis-trans iso	1.0	1.0	0.853	0.0
449438434	361	PREDICTED: peptidyl-prolyl cis-trans iso	1.0	1.0	0.839	0.0
224123292	370	predicted protein [Populus trichocarpa]	1.0	0.975	0.828	0.0
449517543	361	PREDICTED: LOW QUALITY PROTEIN: peptidyl	1.0	1.0	0.836	0.0
355329950	362	cyclophilin 40 [Nicotiana tabacum]	1.0	0.997	0.833	0.0
363807868	361	uncharacterized protein LOC100804110 [Gl	1.0	1.0	0.839	0.0
224081585	361	predicted protein [Populus trichocarpa]	1.0	1.0	0.836	0.0

>gi|225428707|ref|XP_002284980.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 [Vitis vinifera] gi|297741330|emb|CBI32461.3| unnamed protein product [Vitis vinifera]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/361 (85%), Positives = 338/361 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRC+LDISIG ELEGR++VE+YND++P+TAENFRALCTGEKGIGPNTGVPLHYKGV 
Sbjct: 1   MGRPRCYLDISIGEELEGRVVVELYNDIVPRTAENFRALCTGEKGIGPNTGVPLHYKGVC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI+GFMIQGGDISAG+GTGGESIYGLKFEDENFELKHERKGMLSMAN+G NTNGSQF
Sbjct: 61  FHRVIRGFMIQGGDISAGNGTGGESIYGLKFEDENFELKHERKGMLSMANSGANTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRSIEHV TGDNDCP  +V I DCGEIPEG D+G
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDCPTVNVLIADCGEIPEGVDNG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           +SNFF DGD+YPDWPADLD+ PN+LSWW NAVDS+K FGNEH+KKQDYKMALRKYRKALR
Sbjct: 181 VSNFFKDGDTYPDWPADLDENPNDLSWWTNAVDSVKAFGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKS IFTNSSACKLKLGDLKGALLDT+FAMRD ++NVKA
Sbjct: 241 YLDICWEKEGIDEEKSSCLRKTKSLIFTNSSACKLKLGDLKGALLDTDFAMRDEENNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           L+RQGQAYMALND+DAA ESF+KAL+LEPNDGGIK+ELA AKKKI +RREQE+K Y +MF
Sbjct: 301 LYRQGQAYMALNDIDAAAESFKKALELEPNDGGIKRELAAAKKKIADRREQERKAYSRMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561673|ref|XP_002521846.1| peptidyl-prolyl cis-trans isomerase d, ppid, putative [Ricinus communis] gi|223538884|gb|EEF40482.1| peptidyl-prolyl cis-trans isomerase d, ppid, putative [Ricinus communis]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/361 (86%), Positives = 339/361 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRCFLDISIG ELEGRI++E+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKG  
Sbjct: 1   MGRPRCFLDISIGGELEGRIVIELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGCP 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF
Sbjct: 61  FHRIIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRSIEHV TG+ D P  DV I DCGEIPEGADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGEGDYPAVDVLIADCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD +PDWPADL  +PNELSWWM+AVDSIK FGNE YKK D+KMALRKYRKALR
Sbjct: 181 ISNFFKDGDIFPDWPADLSDSPNELSWWMDAVDSIKGFGNESYKKLDFKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEK+GIDE KSSSLRKTKSQIFTNS+ACKLKLGDLKGALLDT+FAMR+GD+NVKA
Sbjct: 241 YLDICWEKDGIDEEKSSSLRKTKSQIFTNSAACKLKLGDLKGALLDTDFAMREGDNNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQA+M LND+DAAVESF+KAL+LEPND GIKKELA A+KKI++RR+QE+KQY+KMF
Sbjct: 301 LFRQGQAHMLLNDIDAAVESFKKALQLEPNDAGIKKELAAARKKINDRRDQERKQYQKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103535|ref|XP_002313093.1| predicted protein [Populus trichocarpa] gi|222849501|gb|EEE87048.1| predicted protein [Populus trichocarpa]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/361 (84%), Positives = 336/361 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI++E+YNDV+PKTAENFRALCTGEKG+GPNTGVPLHYKG  
Sbjct: 1   MRRSRCFLDISIGGELEGRIVIELYNDVVPKTAENFRALCTGEKGVGPNTGVPLHYKGCC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR IKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRAIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGD DCP +DV I DCGEIPE ADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSMEHVTTGDADCPASDVIIVDCGEIPEDADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I NFF DGD+YPDWPADL++ PNELSWWM+AVDSIK FGNEH+KKQDYKMAL+KYRKALR
Sbjct: 181 ICNFFKDGDAYPDWPADLNEIPNELSWWMSAVDSIKAFGNEHFKKQDYKMALKKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS+LRK KSQIFTNS+A KLKLGDLKGAL+DT+FA+RDG++N KA
Sbjct: 241 YLDICWEKEGIDEEKSSALRKAKSQIFTNSAASKLKLGDLKGALVDTDFAIRDGENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAYMALNDVDAA ESF+KAL+LEPND GIK+EL  A+KKI+ERR++EKKQY KMF
Sbjct: 301 LFRQGQAYMALNDVDAAAESFKKALQLEPNDAGIKRELNAARKKINERRDREKKQYEKMF 360

Query: 361 Q 361
           +
Sbjct: 361 K 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521481|ref|XP_003529384.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/361 (85%), Positives = 334/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGPNTGVPLH+KG  
Sbjct: 1   MGRGRCFLDISIGQELEGRIVVELYDDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGD+D P  DV + DCGEIPEG DDG
Sbjct: 121 FISTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVATGDDDRPALDVKVVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD+YPDWPADLD++PNEL WWM +VDSIK FGNE+Y+KQDYKMALRKYRKALR
Sbjct: 181 ISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKAFGNEYYRKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  SSSLRKTKSQIFTNSSA KLKLGD+KGALLDTEFAMR+GDDN KA
Sbjct: 241 YLDICWEKEGIDEEISSSLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDDNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAYMAL+D+DAAVESF+KAL LEPND GIKKELA A+K I +RR+QEKK Y KMF
Sbjct: 301 LFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKMIADRRDQEKKAYSKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438434|ref|XP_004136993.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Cucumis sativus]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/361 (83%), Positives = 336/361 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG +LEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGP+TGVPLH+KG  
Sbjct: 1   MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYG KF+DENFE+KHERKGMLSMAN+GPN+NGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGEKFDDENFEVKHERKGMLSMANSGPNSNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRT HLDGKHVVFG+V+KGMGVVRSIEHV TG+N CPIA+V I+DCGEIPEGADDG
Sbjct: 121 FITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENACPIAEVIISDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFFNDGD++PDWP DL+Q+ ++L WW+ AVDS+KVFGNEHYKKQDYKMALRKYRKALR
Sbjct: 181 ISNFFNDGDTFPDWPTDLEQSSDDLEWWVKAVDSVKVFGNEHYKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKSQIFTNSSACKLKLGDLKGALLDT+FAMRDGDDNVKA
Sbjct: 241 YLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDDNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQA+MALND+D+AVESF+KA  LEPND  IKKELA A+KKI +RR QE+K Y KMF
Sbjct: 301 LFRQGQAHMALNDIDSAVESFKKASDLEPNDAAIKKELAAARKKIADRRNQERKAYSKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123292|ref|XP_002330280.1| predicted protein [Populus trichocarpa] gi|222871315|gb|EEF08446.1| predicted protein [Populus trichocarpa]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/361 (82%), Positives = 333/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRCFLDISIG ELEGRI+VE+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKG R
Sbjct: 1   MGRPRCFLDISIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGCR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTR SHLDGKHVVFG+ +KG+GVVRSIEHV TGD +CP +DV I DCGEIPEGADDG
Sbjct: 121 FISTTRASHLDGKHVVFGKAVKGIGVVRSIEHVTTGDAECPTSDVMIVDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             NFF DGD+YPDWPADL ++P+ELSWWMNAVDSIK  GNEH+KKQDYKMALRKYRKALR
Sbjct: 181 TCNFFKDGDAYPDWPADLYESPSELSWWMNAVDSIKASGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS+LRKTKSQ FTNS+A +LKLGDLKGAL+DT+ A+RD ++N KA
Sbjct: 241 YLDICWEKEGIDEEKSSALRKTKSQTFTNSAASRLKLGDLKGALVDTDLAIRDWENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAY ALNDVDAA ESF+KAL+LEPND GIK+EL  A+KK++ERR+QE+++Y KMF
Sbjct: 301 LFRQGQAYKALNDVDAAAESFKKALQLEPNDAGIKRELNAARKKVNERRDQERRRYEKMF 360

Query: 361 Q 361
           +
Sbjct: 361 E 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517543|ref|XP_004165805.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase CYP40-like [Cucumis sativus]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/361 (83%), Positives = 335/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG +LEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGP+TGVPLH+KG  
Sbjct: 1   MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYG KF+DENFE+KHER GMLSMAN+GPN+NGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGEKFDDENFEVKHERXGMLSMANSGPNSNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRT HLDGKHVVFG+V+KGMGVVRSIEHV TG+N CPIA+V I+DCGEIPEGADDG
Sbjct: 121 FITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENACPIAEVIISDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFFNDGD++PDWP DL+Q+ ++L WW+ AVDS+KVFGNEHYKKQDYKMALRKYRKALR
Sbjct: 181 ISNFFNDGDTFPDWPTDLEQSSDDLEWWVKAVDSVKVFGNEHYKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKSQIFTNSSACKLKLGDLKGALLDT+FAMRDGDDNVKA
Sbjct: 241 YLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDDNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQA+MALND+D+AVESF+KA  LEPND  IKKELA A+KKI +RR QE+K Y KMF
Sbjct: 301 LFRQGQAHMALNDIDSAVESFKKASDLEPNDAAIKKELAAARKKIADRRNQERKAYSKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329950|dbj|BAL14274.1| cyclophilin 40 [Nicotiana tabacum]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/361 (83%), Positives = 334/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRC+LDISIG ELEGRI+VE+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKGVR
Sbjct: 1   MGRPRCYLDISIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAG NTNGSQF
Sbjct: 61  FHRVIKSFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGANTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+VIKGMGVVRS+EHV TGDND P+ DV+I DCGEIP+GADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVIKGMGVVRSMEHVTTGDNDFPMVDVSIADCGEIPQGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I+NFF DGD YPDWPADLD   +++SWW+ A+++IK FGNE++KKQDYKMALRKYRKALR
Sbjct: 181 IANFFKDGDLYPDWPADLDNNTDDISWWVTALEAIKAFGNENFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKE IDE +S+ LRK KSQIFTNSSACKLKLGDLKGALLD +FAMRDG++N KA
Sbjct: 241 YLDICWEKEEIDEDRSAYLRKMKSQIFTNSSACKLKLGDLKGALLDADFAMRDGENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQA+MALND+DAAVESF KAL+LEPNDGGIK +LA AKKKI +RR++EKK Y +MF
Sbjct: 301 LFRQGQAHMALNDIDAAVESFMKALELEPNDGGIKNQLAAAKKKIADRRDKEKKAYARMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807868|ref|NP_001241932.1| uncharacterized protein LOC100804110 [Glycine max] gi|255644776|gb|ACU22890.1| unknown [Glycine max]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/361 (83%), Positives = 331/361 (91%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI+VE+Y+DV+PKTAENFRALCTGEKGIG NTGVPLH+KG  
Sbjct: 1   MGRGRCFLDISIGEELEGRIVVELYDDVVPKTAENFRALCTGEKGIGSNTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISAGDGTGGES+YGLKFEDENFELKHERKGMLSMAN+GP+TNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISAGDGTGGESVYGLKFEDENFELKHERKGMLSMANSGPDTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGDND P  DV I DCGEIPEG DDG
Sbjct: 121 FISTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVATGDNDRPTLDVKIVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD+YPDWPADLD++PNEL WWM +VDSIK FGN++Y+KQDYKMALRKYRKALR
Sbjct: 181 ISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKAFGNDYYRKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  SS LRKTKSQIFTNSSA KLKLGD+KGALLDTEFAMR+GD+N KA
Sbjct: 241 YLDICWEKEGIDEEISSGLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDNNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAYMAL+D+DAAVESF+KAL LEPND GIKKELA A+KKI + R+ EKK Y KMF
Sbjct: 301 LFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKIADGRDLEKKAYSKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081585|ref|XP_002306460.1| predicted protein [Populus trichocarpa] gi|222855909|gb|EEE93456.1| predicted protein [Populus trichocarpa]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/361 (83%), Positives = 328/361 (90%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           MA+PRC+LDISIG ELEGRI+VE+Y DV+PKTAENFRALCTGEKGIGPNTGVPLHYKG R
Sbjct: 1   MAKPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGGR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV++GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN GP+TNGSQF
Sbjct: 61  FHRVVRGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANMGPDTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V KGMGVVRSIEHV+T   D P  +  I DCGEIPEG DDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVTKGMGVVRSIEHVVTEGGDSPSQETVIVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           IS+FF DGD+YPDWPADLD  P+E+SWWM AVDSIK FGNE YKKQD KMALRKYRKALR
Sbjct: 181 ISDFFKDGDTYPDWPADLDMKPDEISWWMKAVDSIKAFGNEQYKKQDCKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLD+CWEKE IDE KSSSLRKTKSQIFTNSSACKLKLGD+KGALLDT+FAMRDG+DN KA
Sbjct: 241 YLDVCWEKEDIDEEKSSSLRKTKSQIFTNSSACKLKLGDIKGALLDTDFAMRDGEDNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
            FRQGQAYMALND+DAAV SF+KAL LEPNDGGIKKELA A+KKI +R +QEK+ Y +MF
Sbjct: 301 FFRQGQAYMALNDIDAAVASFKKALDLEPNDGGIKKELASARKKIADRHDQEKRAYARMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2044596	361	SQN "SQUINT" [Arabidopsis thal	0.997	0.997	0.752	9e-148
ZFIN|ZDB-GENE-040625-34	371	ppid "peptidylprolyl isomerase	0.983	0.956	0.456	1.7e-82
UNIPROTKB|F1RTY6	370	PPID "Uncharacterized protein"	0.983	0.959	0.458	3.7e-80
RGD|1303174	370	Ppid "peptidylprolyl isomerase	0.980	0.956	0.462	3.7e-80
MGI|MGI:1914988	370	Ppid "peptidylprolyl isomerase	0.980	0.956	0.459	9.7e-80
UNIPROTKB|P26882	370	PPID "Peptidyl-prolyl cis-tran	0.983	0.959	0.447	1.2e-79
UNIPROTKB|Q08752	370	PPID "Peptidyl-prolyl cis-tran	0.983	0.959	0.452	1.1e-78
UNIPROTKB|E2QTC7	372	PPID "Uncharacterized protein"	0.977	0.948	0.45	5.5e-77
UNIPROTKB|G4MYB7	376	MGG_08104 "Peptidyl-prolyl cis	0.986	0.946	0.457	5e-76
UNIPROTKB|E1BXG9	370	PPID "Uncharacterized protein"	0.977	0.954	0.444	6.3e-76

TAIR|locus:2044596 SQN "SQUINT" [Arabidopsis thaliana (taxid:3702)]

 Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
 Identities = 271/360 (75%), Positives = 295/360 (81%)

Query:     1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
             M R +CF+DISIG ELEGRI++E+Y+DV+PKTAENFR LCTGEKG+GPNTGVPLHYKG R
Sbjct:     1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query:    61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
             FHRVIKGFMIQ            ESIYGLKF+DENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct:    61 FHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQF 120

Query:   121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
             FITTTRTSHLDGKHVVFGRV KGMGVVRSIEHV   +  CP  DV I DCGEIPEGADDG
Sbjct:   121 FITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDG 180

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I +FF DGD YPDWP DL+++P ELSWWM  VD +K  GNEH+KKQDYKMALRKYRKALR
Sbjct:   181 ICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALR 240

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             YLDICWEKEGIDE  S++LRKTKSQIFTNS+AC             TEFAMRD D+NVKA
Sbjct:   241 YLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKA 300

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             LFRQGQAYMALN+VDAA ES EKAL+ EPND GIKKE A   KKI  R  +EKKQYRKMF
Sbjct:   301 LFRQGQAYMALNNVDAAAESLEKALQFEPNDAGIKKEYAAVMKKIAFRDNEEKKQYRKMF 360

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0010050 "vegetative phase change" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-040625-34 ppid "peptidylprolyl isomerase D" [Danio rerio (taxid:7955)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 163/357 (45%), Positives = 221/357 (61%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GR++ E++ DV+PKTAENFRALCTGEKG+G +TG PLH+KG  FHR
Sbjct:    16 PRVFFDVEIGAERVGRVVFELFADVVPKTAENFRALCTGEKGVGKSTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKSFMIQGGDFSNQNGTGGESIYGDKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+V+KGMGVV+ +E + T + D P+    I +CGE   G D  I+ 
Sbjct:   136 TVPTPHLDGKHVVFGQVLKGMGVVKMLEAMETKE-DNPVKPCVIAECGEHKAGDDWSIAL 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GD+YPD+P D +    ++   ++  + +K  GN  +K Q+++ A++KY KALRYL+
Sbjct:   195 NDGSGDAYPDFPEDSEVDFKDVDKVLSVAEDLKNIGNNFFKAQNWQSAIKKYSKALRYLE 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
             +C      D+     L  T      N++AC              +  +     N KALFR
Sbjct:   255 MCGNIVD-DDSSQKKLEPTALSCILNTAACKLKLKLWQEAIESCDEVLELNQTNTKALFR 313

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             + QA+  L + + A+   +KA ++ P D  I  E+   K+++ E +E+EKK Y KMF
Sbjct:   314 RAQAWQGLKEFNKAMVDLKKAHEIAPEDKAIGNEMNKVKQQVKEEKEKEKKIYAKMF 370

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|F1RTY6 PPID "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 165/360 (45%), Positives = 218/360 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGCNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKGMGV R +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLC--VIAECGELKEGDDWG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q ++MA++KY K LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADIDLKDIDKILLITEDLKNIGNTFFKSQKWEMAIKKYTKVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y+D    K   +E     L+        N  AC                A+     N KA
Sbjct:   252 YVD--GAKAVSEEADGLKLQPVALSCMLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             L+R+ Q +  L + D A+ + +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct:   310 LYRRAQGWQGLKEYDQALAALKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

RGD|1303174 Ppid "peptidylprolyl isomerase D" [Rattus norvegicus (taxid:10116)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 165/357 (46%), Positives = 217/357 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG GP TG PLH+KG  FHR
Sbjct:    16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+VIKG+GV R +E+V   + + P     I +CGE+ EG + GI  
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGLGVARMLENVEV-NGEKPAKLCVIAECGELKEGDEWGIFP 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRYLD
Sbjct:   195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLD 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
                 K  I++   S L+        N  AC                A+     N KAL+R
Sbjct:   255 S--SKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             + Q +  L + D A+   +KA ++ P D  I+ EL   K+ I  ++++EK  Y KMF
Sbjct:   313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO;IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO;ISS

GO:0051881 "regulation of mitochondrial membrane potential" evidence=IMP

GO:0061077 "chaperone-mediated protein folding" evidence=ISO;ISS

GO:0071492 "cellular response to UV-A" evidence=ISO;ISS

MGI|MGI:1914988 Ppid "peptidylprolyl isomerase D (cyclophilin D)" [Mus musculus (taxid:10090)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 164/357 (45%), Positives = 217/357 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG G  TG PLH+KG  FHR
Sbjct:    16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+VIKG+GV R++E+V   + + P     I +CGE+ EG D GI  
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKPAKLCVIAECGELKEGDDWGIFP 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY+D
Sbjct:   195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVD 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
                 K  I++   S L+        N  AC                A+     N KAL+R
Sbjct:   255 S--SKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             + Q +  L + D A+   +KA ++ P D  I+ EL   K+ I  ++++EK  Y KMF
Sbjct:   313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005528 "FK506 binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0061077 "chaperone-mediated protein folding" evidence=ISO

GO:0071492 "cellular response to UV-A" evidence=ISO

UNIPROTKB|P26882 PPID "Peptidyl-prolyl cis-trans isomerase D" [Bos taurus (taxid:9913)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 161/360 (44%), Positives = 219/360 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKGMGV + +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLC--VIAECGELKEGDDWG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y++    +   ++   + L+        N  AC                A+     N KA
Sbjct:   252 YVE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             L+R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct:   310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0034389 "lipid particle organization" evidence=ISS

GO:0071492 "cellular response to UV-A" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051879 "Hsp90 protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0006457 "protein folding" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0030331 "estrogen receptor binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q08752 PPID "Peptidyl-prolyl cis-trans isomerase D" [Homo sapiens (taxid:9606)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 163/360 (45%), Positives = 217/360 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIG  TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKG+GV R +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLC--VIAECGELKEGDDGG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY + LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y+D    K  I+    + L+        N  AC                A+     N KA
Sbjct:   252 YVDS--SKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             L+R+ Q +  L + D A+   +KA  + P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct:   310 LYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDKEKAVYAKMF 369

GO:0006915 "apoptotic process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0019076 "viral release from host cell" evidence=TAS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0071492 "cellular response to UV-A" evidence=IMP

GO:0034389 "lipid particle organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|E2QTC7 PPID "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 162/360 (45%), Positives = 218/360 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D++I  E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  FHR
Sbjct:    16 PRVFFDVAIAGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFYYKHDQEGLLSMANAGCNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDGIS 182
             T  T HLDGKHVVFG+VIKGMGV R +E+V + G+   P     I +CGE+ EG D GI 
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEK--PTKLCVIAECGELKEGDDWGIF 193

Query:   183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
                  GD++PD+P D D    +++  +   + +K  GN  +K Q+++MA++KY K LRY+
Sbjct:   194 PKDGSGDNHPDFPEDADIDLKDVNKILLITEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV 253

Query:   243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALF 302
             +    K   ++     L+        N  AC                A+     N KAL+
Sbjct:   254 ES--SKAVAEQADRLKLQPMALSCVLNIGACKLKMSNWQGAVDSCLEALEIDPSNTKALY 311

Query:   303 RQGQAYMALNDVDAAV--ESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             R+ Q +  L + D A+     +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct:   312 RRAQGWQGLKEYDQALLKADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 371

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|G4MYB7 MGG_08104 "Peptidyl-prolyl cis-trans isomerase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 169/369 (45%), Positives = 217/369 (58%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             ARPR F DISI  +  GRI+ E+++DV+PKTAENFRALCTGEKGIG  +G PLHYKG  F
Sbjct:    10 ARPRVFFDISIDDKPAGRIVFELFSDVVPKTAENFRALCTGEKGIG-KSGKPLHYKGSSF 68

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HRVIK FMIQ            ESIYG KF+DENFEL H+R  +LSMANAGP TNGSQFF
Sbjct:    69 HRVIKQFMIQGGDFTAGNGTGGESIYGEKFDDENFELIHDRPFLLSMANAGPGTNGSQFF 128

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGA--DD 179
             +TT  T HLD KHVVFG+V+ G  VVR +E++ T   D P+   TI DCGE+P  A   D
Sbjct:   129 VTTVPTPHLDKKHVVFGQVLSGKSVVRQVENLTTHAGDKPVKSATIADCGELPADAVVGD 188

Query:   180 GISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
                     GD Y D+P D +  P +++         K +GN  +K  D+  AL KY+K L
Sbjct:   189 AAKEADKYGDKYEDFPEDDEGGPLDVARVTTIASDCKTYGNSAFKVGDHATALTKYQKGL 248

Query:   240 RYLDICWEKEGIDEGKSSSLRKTKSQI-FT-NSSACXXXXXXXX----XXXXXTEFAMRD 293
             RYL+   E E   E   + +++  + + FT N++A                  +  A++ 
Sbjct:   249 RYLNE--EPERDQENIPADVKEKLAALRFTLNNNAALMNLKLESWEDAKNAASSALAVKS 306

Query:   294 GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351
               D    KAL+R+G AY+ L D DAA++  E+A KL P D  + KEL   KK    R  +
Sbjct:   307 ASDADRAKALYRRGLAYIRLKDEDAAIKDLEEAKKLAPADAAVAKELEQVKKAAAARAAK 366

Query:   352 EKKQYRKMF 360
             EK  Y+K F
Sbjct:   367 EKAAYKKFF 375

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BXG9 PPID "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 159/358 (44%), Positives = 210/358 (58%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GRI+ E++ D++PKTAENFRALCTGEKG G  TG PLHYKG  FHR
Sbjct:    16 PRAFFDVDIGGERVGRIVFELFADIVPKTAENFRALCTGEKGTGATTGKPLHYKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FM+Q            ESIYG KFEDENF  KH++ G+LSMANAGP TNGSQFFIT
Sbjct:    76 IIKQFMVQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKPGLLSMANAGPGTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDGIS 182
             T  TSHLDGKHVVFG+VIKGMGVV+ +E+V + G+N   +    I +CGE+ EG D GI 
Sbjct:   136 TVPTSHLDGKHVVFGQVIKGMGVVKILENVEVNGENPAKLC--VIAECGELKEGDDWGIV 193

Query:   183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
                  GD+YPD+P D D    ++   +   + IK  GN  +  +D + A +     L Y+
Sbjct:   194 PQDGSGDTYPDFPEDSDIDLKDVLKGVAIAEDIKNIGNILFSTRDAQQADKSIASCLMYV 253

Query:   243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALF 302
             +    +   +EG    L+        N  AC                A++    N KAL+
Sbjct:   254 EA--SETVAEEGDKPKLKTVGLSCVLNIGACKLKLSDWQGAIESCSEALQIDPANTKALY 311

Query:   303 RQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             R+ Q +  + D+D A+   +KA ++ P D  I+ E    K+KI  ++E+EK  Y KMF
Sbjct:   312 RRAQGWQGIKDLDQALADLKKAHEIAPEDKAIQTETLKIKQKIKAQKEKEKAAYAKMF 369

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C566	CYP40_ARATH	5, ., 2, ., 1, ., 8	0.8138	0.9972	0.9972	yes	no
Q6BXZ7	PPID_DEBHA	5, ., 2, ., 1, ., 8	0.4569	0.9778	0.9540	yes	no
Q75A33	PPID_ASHGO	5, ., 2, ., 1, ., 8	0.4277	0.9861	0.9647	yes	no
Q6CBP4	PPID_YARLI	5, ., 2, ., 1, ., 8	0.4508	0.9916	0.9754	yes	no
Q4HXF6	PPID_GIBZE	5, ., 2, ., 1, ., 8	0.4927	0.9279	0.9005	yes	no
Q4WIF3	PPID_ASPFU	5, ., 2, ., 1, ., 8	0.4748	0.9722	0.9310	yes	no
P26882	PPID_BOVIN	5, ., 2, ., 1, ., 8	0.4874	0.9861	0.9621	yes	no
P53691	PPID_YEAST	5, ., 2, ., 1, ., 8	0.4396	0.9889	0.9622	yes	no
Q9CR16	PPID_MOUSE	5, ., 2, ., 1, ., 8	0.4957	0.9806	0.9567	yes	no
Q6FNU6	PPID_CANGA	5, ., 2, ., 1, ., 8	0.4297	0.9778	0.9514	yes	no
Q2U0E0	PPID_ASPOR	5, ., 2, ., 1, ., 8	0.4538	0.9806	0.9541	yes	no
Q6CL78	PPID_KLULA	5, ., 2, ., 1, ., 8	0.4320	0.9889	0.9596	yes	no
Q11004	PPID_SCHPO	5, ., 2, ., 1, ., 8	0.4196	0.9445	0.9578	yes	no
Q6DGG0	PPID_RAT	5, ., 2, ., 1, ., 8	0.4985	0.9806	0.9567	yes	no
Q5B4E7	PPID_EMENI	5, ., 2, ., 1, ., 8	0.4879	0.9722	0.9435	yes	no
P0CP80	PPID_CRYNJ	5, ., 2, ., 1, ., 8	0.4210	0.9806	0.944	yes	no
P0C1I1	PPID_RHIO9	5, ., 2, ., 1, ., 8	0.5081	0.9778	0.9697	N/A	no
Q08752	PPID_HUMAN	5, ., 2, ., 1, ., 8	0.4902	0.9861	0.9621	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.998
4th Layer	5.2.1.8	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-99
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	1e-81
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	3e-71
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	3e-64
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	2e-59
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	3e-57
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	4e-56
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	4e-52
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	4e-49
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	6e-48
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	1e-37
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	2e-35
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	7e-28
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	7e-22
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	9e-15
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	1e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-12
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	1e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-07
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	1e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-07
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	3e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-07
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	5e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-05
pfam13428	44	pfam13428, TPR_14, Tetratricopeptide repeat	1e-04
pfam13174	33	pfam13174, TPR_6, Tetratricopeptide repeat	2e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  291 bits (747), Expect = 1e-99
 Identities = 111/168 (66%), Positives = 130/168 (77%), Gaps = 4/168 (2%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+ F DI+IG E  GRI++E++ DV+PKTAENFRALCTGEKG G   G P  YKG  FHR
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG---GKPFGYKGSTFHR 57

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FMIQGGD + G+GTGG+SIYG KF DENF+LKH   G+LSMANAGPNTNGSQFFIT
Sbjct: 58  VIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFIT 117

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T +T  LDGKHVVFG+V++GM VV+ IE+V +G N  P   V I DCG
Sbjct: 118 TVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  246 bits (629), Expect = 1e-81
 Identities = 106/173 (61%), Positives = 126/173 (72%), Gaps = 3/173 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
             RP+ F DISI     GRI+ E+++DV PKTAENFRALC G+K      G  LHYKG  
Sbjct: 13  SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSS--GKNLHYKGSI 70

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FM QGGDI+  +GTGGESIYG KF DENF+LKH++ G+LSMANAGPNTNGSQF
Sbjct: 71  FHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQF 130

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT     LDGKHVVFG+VI+GM VVR++E   T  +  P   V +TDCGE+
Sbjct: 131 FITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  220 bits (561), Expect = 3e-71
 Identities = 100/171 (58%), Positives = 118/171 (69%), Gaps = 4/171 (2%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D++IG    GRI +E++ D+ PKTAENFR  CTGE       G+P  YKG +FHR
Sbjct: 19  PVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEF---RKAGLPQGYKGCQFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD   GDGTG  SIYG KFEDENF  KH   G+LSMAN+GPNTNG QFFIT
Sbjct: 76  VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             +   LD KHVVFGRV+  G+ VVR IE+V TG N+ P     I++CGE+
Sbjct: 136 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  200 bits (511), Expect = 3e-64
 Identities = 90/164 (54%), Positives = 102/164 (62%), Gaps = 19/164 (11%)

Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
            LD + G     RI++E+Y D  PKT ENF +L  G             Y G  FHRVI 
Sbjct: 1   TLDTTKG-----RIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIP 44

Query: 67  GFMIQGGDISAGDGTGGESIYGLKFEDENFELK-HERKGMLSMANAGPNTNGSQFFITTT 125
           GFMIQGGD +   G G  S  G KF DENF LK H R+G LSMANAGPNTNGSQFFITT 
Sbjct: 45  GFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTA 102

Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
            T HLDGKH VFG+V++GM VV  IE   T +N  PI  VTI+D
Sbjct: 103 PTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  187 bits (478), Expect = 2e-59
 Identities = 78/164 (47%), Positives = 94/164 (57%), Gaps = 20/164 (12%)

Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
           FLDI+      GRI++E++ D  PKT ENF +LC  +KG          Y G  FHRVI 
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKG---------FYDGTIFHRVIP 46

Query: 67  GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
           GFMIQGGD +     G  SI      DE       ++G LSMA +GPN+ GSQFFIT   
Sbjct: 47  GFMIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGD 101

Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
             HLDG + VFGRV++GM VV  IE V   D D P+ DV IT C
Sbjct: 102 APHLDGGYTVFGRVVEGMDVVEKIEKV-ETDGDRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  182 bits (465), Expect = 3e-57
 Identities = 75/159 (47%), Positives = 88/159 (55%), Gaps = 21/159 (13%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+Y D  PKT  NF  L                Y G  FHRVI GFMIQGGD + 
Sbjct: 9   GDITIELYPDKAPKTVANFLQLVK-----------EGFYDGTIFHRVIPGFMIQGGDPTG 57

Query: 78  GDGTGGESIYGLKFEDENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKH 134
           GDGTGG       F+DENF L  +R  +G LSMA AG PN+NGSQFFIT      LDGK+
Sbjct: 58  GDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKY 114

Query: 135 VVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITD 169
            VFG+V++GM VV  I++  T D     D P   V I  
Sbjct: 115 TVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  179 bits (457), Expect = 4e-56
 Identities = 84/151 (55%), Positives = 97/151 (64%), Gaps = 13/151 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++ +  PKT ENF        G         +Y    FHRVIKGFMIQ GD   
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHA--RNG---------YYNNTIFHRVIKGFMIQTGD-PT 54

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE +  LKH+R   LSMANAGPNTNGSQFFITT  T  LD KH V
Sbjct: 55  GDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 114

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV+KGM VV+ IE+V T  ND P  D+ I
Sbjct: 115 FGRVVKGMDVVQRIENVKTDKNDRPYEDIKI 145

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  169 bits (431), Expect = 4e-52
 Identities = 74/153 (48%), Positives = 94/153 (61%), Gaps = 13/153 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ D  PK  ENF ALC              +Y G  FHR IKGFM+Q GD   
Sbjct: 10  GDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGD-PT 57

Query: 78  GDGTGGESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GGESI+G KFEDE  E LKH+ +G++SMAN GPNTNGSQFFIT  +  HLDGK+ V
Sbjct: 58  GTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FG+VI G   + ++E +       P+ ++ I D
Sbjct: 118 FGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  162 bits (411), Expect = 4e-49
 Identities = 74/153 (48%), Positives = 96/153 (62%), Gaps = 13/153 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D  PK  ENF  LC  +KG         +Y G  FHR I+ FMIQGGD + 
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKG---------YYDGTIFHRSIRNFMIQGGDPT- 56

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GGESI+G  F+DE    L H+ +G+LSMAN+GPNTNGSQFFIT     HLDGKH V
Sbjct: 57  GTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTV 116

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FGRV+ G+  + ++E+V     D P  ++ I D
Sbjct: 117 FGRVVGGLETLEAMENVPDPGTDRPKEEIKIED 149

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  158 bits (402), Expect = 6e-48
 Identities = 82/151 (54%), Positives = 96/151 (63%), Gaps = 14/151 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+Y +  PKT +NF  L    +G         +Y G  FHR+IK FMIQGGD   
Sbjct: 7   GEITLELYWNHAPKTCKNFYELAK--RG---------YYNGTIFHRLIKDFMIQGGD-PT 54

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG KFEDE + ELKH   G+LSMANAGPNTNGSQFFIT   T  LDGKH +
Sbjct: 55  GTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTI 114

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV KGM V+ ++  V T   D PI +V I
Sbjct: 115 FGRVSKGMKVIENMVEVQT-QTDRPIDEVKI 144

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  135 bits (341), Expect = 1e-37
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 7/169 (4%)

Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           R FLDISIG  L GR++ E++ DV+P+T ENFRAL TG  GI  NTGV L Y     H V
Sbjct: 54  RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Query: 65  IK--GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
            +    ++ G   S    + G  I      DE +  +H  +G+L+M + GP+T+GS F I
Sbjct: 114 DRNNNIIVLGELDSFNVSSTGTPI-----ADEGYRHRHTERGLLTMISEGPHTSGSVFGI 168

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T   +  LD K VVFG+ +  + ++  +E +   D   P+  VT++ CG
Sbjct: 169 TLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCG 217

Length = 249

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  127 bits (320), Expect = 2e-35
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 13/124 (10%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+++   PK   NF  LC              +Y    FHRV+ GF+IQGGD + 
Sbjct: 15  GDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT- 62

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G GTGGESIYG  F+DE +  L+  R+G++ MANAG ++NGSQFF T  +   L+ KH +
Sbjct: 63  GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTL 122

Query: 137 FGRV 140
           FG+V
Sbjct: 123 FGKV 126

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  106 bits (267), Expect = 7e-28
 Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 21/161 (13%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
            G ++++++ D  P    NF  LC  +           +Y    F+ V K F+ Q GD +
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT 54

Query: 77  AGDGTGGESIYGLK-------FEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTR-T 127
            G G GGESIY          FE E    LKH +KG +SM NAG N NGSQF+IT     
Sbjct: 55  -GTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENL 113

Query: 128 SHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168
            +LDGKH VFG+V++G  V+  I   +  D+  P+ D+ I 
Sbjct: 114 DYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIK 154

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 90.6 bits (225), Expect = 7e-22
 Identities = 56/169 (33%), Positives = 70/169 (41%), Gaps = 38/169 (22%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGG---- 73
           G I+VE+Y+D  P T ENF A     KG          Y    FHRVI GF+IQGG    
Sbjct: 7   GDIVVELYDDKAPITVENFLAYV--RKG---------FYDNTIFHRVISGFVIQGGGFTP 55

Query: 74  ---DISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSH 129
                        E+  GL             +G ++MA    P++  SQFFI     + 
Sbjct: 56  DLAQKETLKPIKNEAGNGLS----------NTRGTIAMARTNAPDSATSQFFINLKDNAS 105

Query: 130 LD-----GKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTITD 169
           LD       + VFG V +GM VV  I  V T       D P+ DV I  
Sbjct: 106 LDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 71.0 bits (174), Expect = 9e-15
 Identities = 54/171 (31%), Positives = 76/171 (44%), Gaps = 41/171 (23%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I+++ ++D  P+T +NF   C   +G   NT          FHRVI GFMIQGG    
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR--EGFYNNT---------IFHRVINGFMIQGGGFEP 57

Query: 78  GDGTGGESIYGLKFEDENFELKHE-------RKGMLSMANAG-PNTNGSQFFITTT---- 125
                     G+K +     +K+E        +G L+MA    P++  +QFFI       
Sbjct: 58  ----------GMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDF 107

Query: 126 ---RTSHLDG-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTIT 168
                  L G  + VF  V++GM VV  I+ V TG +    D P  DV I 
Sbjct: 108 LNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158

Length = 164

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 24/168 (14%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
            G I +E+ +   P + +NF            N+G    Y    FHRVI GFMIQGG  +
Sbjct: 37  AGNIELELNSQKAPVSVKNFVDYV--------NSG---FYNNTTFHRVIPGFMIQGGGFT 85

Query: 77  AGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK- 133
                  +    +K E +N  L++ R G ++MA  A  ++  SQFFI     + LD G+ 
Sbjct: 86  E-QMQQKKPNPPIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQR 142

Query: 134 ---HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
              + VFG+V+KGM V   I  V T D     + P   V I     +P
Sbjct: 143 DFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190

Length = 190

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK  DY  AL  Y KAL                   L    +  + N +A   KLG
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL------------------ELDPDNADAYYNLAAAYYKLG 48

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             + AL D E A+    DN KA +  G AY  L   + A+E++EKAL+L+PN
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 56/176 (31%)

Query: 19  RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGD---- 74
            I+++ YN   P TA NF  L   E+G          Y G+ FHRV  GF++Q GD    
Sbjct: 10  TIVLDGYN--APVTAGNFVDLV--ERGF---------YDGMEFHRVEGGFVVQTGDPQGK 56

Query: 75  -------------------ISAGDGTGGESIYGLKFE-----DENFELKHERKGMLSMAN 110
                                 G     + +YG   E     DE   L     G ++MA 
Sbjct: 57  NPGFPDPETGKSRTIPLEIKPEGQ---KQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMAR 113

Query: 111 A--GPNTNGSQFFI-------TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
               PN+  SQFF        T +R + LDG++ VFG V  G+ ++R ++    GD
Sbjct: 114 TEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK---VGD 166

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
           DN +AL   G A   L D D A+E++EKAL+L+P++      LA+A  K+ +  E+  + 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 356 YRK 358
             K
Sbjct: 61  LEK 63

Length = 69

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +AL+  G AY  L D + A+E++EKAL+L+PN+
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            KAL+  G AY+ L   D A+E +EKAL+L PN+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +AL+  G AY+ L D D A+E +EKAL+L+PN+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           L+ GD   AL   E A+       +AL   G+A +    +  A      AL  +P+D
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
            +A +  GQ Y+ L D + A E +EKAL+L+PN
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33

Length = 34

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324
           +   N      KLGD   AL   E A+    DN  A +    AY  L   + A+E +EKA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 325 LKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
           L+L+P++      L +A  K       + ++  + ++
Sbjct: 61  LELDPDNAKAYYNLGLAYYK-----LGKYEEALEAYE 92

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 196 ADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGK 255
              ++            +++   G        Y+ AL    KAL+               
Sbjct: 151 ELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP------------ 198

Query: 256 SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315
                   ++   N     LKLG  + AL   E A+    DN +AL+      + L   +
Sbjct: 199 -----DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253

Query: 316 AAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
            A+E+ EKAL+L+P+       L +A   +     +  ++
Sbjct: 254 EALEALEKALELDPD----LYNLGLALLLLLAEALELLEK 289

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP 329
            KLGD   A+   E A+    DN +A +    AY+ L  D + A+E  EKAL+L+P
Sbjct: 14  FKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
             AL    +A +AL D+D A+    +AL L+P+D      LA  
Sbjct: 1   PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLLARL 44

Length = 44

>gnl|CDD|221956 pfam13174, TPR_6, Tetratricopeptide repeat

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            AL++   AY+ L D D A E+ E+ LK  P+ 
Sbjct: 1   DALYKLALAYLKLGDTDEAKEALERLLKRYPDS 33

Length = 33

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
               +A +   D D A+ + E AL   P        L  A
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEA 40

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
           +L+LG +  A+     A+    D+  AL   G+AY+AL D + A E   KA +L+P +  
Sbjct: 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

Query: 334 IKKELAVAK 342
            + +L ++K
Sbjct: 399 ARTQLGISK 407

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 21/106 (19%)

Query: 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323
               +      L LGD + A      A     +N  A  + G + ++  D   A+   E 
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422

Query: 324 ALKLEPN--------------DGGIKKELAVAKKKIHERREQEKKQ 355
           A +L+P                G   K LA AKK        EKKQ
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKK-------LEKKQ 461

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           L  G LK AL     A     D+ +A    G+A +A  D++ AV SF+K L L+P+    
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

Query: 335 KKELA----VAKKKIHERREQEK 353
              LA    V K         ++
Sbjct: 638 LLLLADAYAVMKNYAKAITSLKR 660

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 19/98 (19%)

Query: 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC 273
            +K  GN+ Y+ +D+  A++ Y KA+     C               K     ++N +AC
Sbjct: 129 KLKEKGNKAYRNKDFNKAIKLYSKAI----EC---------------KPDPVYYSNRAAC 169

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
              LGD +  + DT  A+    D  KAL R+  AY  L
Sbjct: 170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 15/147 (10%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                       AL KY +AL  L+     +   +   + L                +LG
Sbjct: 95  AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL----------GALYELG 144

Query: 279 DLKGALLDTEFAMR---DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGI 334
           D + AL   E A+    + ++  +AL   G    AL   + A+E  EKALKL P+ D   
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204

Query: 335 KKELAVAKKKIHERREQEKKQYRKMFQ 361
              L +   K+  + E+  + Y K  +
Sbjct: 205 LLNLGLLYLKL-GKYEEALEYYEKALE 230

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 19/124 (15%)

Query: 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275
           ++ G+ + +++DY  A++ YRKAL+                   R   SQ         L
Sbjct: 707 ELEGDLYLRQKDYPAAIQAYRKALK-------------------RAPSSQNAIKLHRALL 747

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
             G+   A+   E  ++   ++        + Y+A  D D A++ ++  +K  P++  + 
Sbjct: 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVL 807

Query: 336 KELA 339
             LA
Sbjct: 808 NNLA 811

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
KOG0553	304	consensus TPR repeat-containing protein [General f	99.88
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.84
KOG4234	271	consensus TPR repeat-containing protein [General f	99.82
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.69
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.64
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.56
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.54
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.51
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.46
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.45
PRK11189	296	lipoprotein NlpI; Provisional	99.44
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.4
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.4
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.38
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.31
KOG1126	638	consensus DNA-binding cell division cycle control	99.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.27
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.27
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.27
PRK15359	144	type III secretion system chaperone protein SscB;	99.27
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.24
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.23
KOG1126	638	consensus DNA-binding cell division cycle control	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.21
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.21
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.21
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.21
PRK12370	553	invasion protein regulator; Provisional	99.21
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.18
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.18
PRK12370	553	invasion protein regulator; Provisional	99.18
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.17
PRK15331	165	chaperone protein SicA; Provisional	99.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.16
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.15
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.15
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.15
KOG1125	579	consensus TPR repeat-containing protein [General f	99.14
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.13
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.1
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.1
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.08
PRK11189	296	lipoprotein NlpI; Provisional	99.08
PLN02789	320	farnesyltranstransferase	99.07
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.06
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.06
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.06
KOG4555	175	consensus TPR repeat-containing protein [Function	99.05
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.99
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.97
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.95
PLN02789	320	farnesyltranstransferase	98.94
PRK10803	263	tol-pal system protein YbgF; Provisional	98.94
KOG2076	895	consensus RNA polymerase III transcription factor	98.94
KOG0553	304	consensus TPR repeat-containing protein [General f	98.94
PF13371	73	TPR_9: Tetratricopeptide repeat	98.94
KOG2003	840	consensus TPR repeat-containing protein [General f	98.93
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.92
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.91
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.91
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.91
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.89
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.89
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.89
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.86
PF13512	142	TPR_18: Tetratricopeptide repeat	98.85
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.82
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.8
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.79
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.79
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.79
KOG1125	579	consensus TPR repeat-containing protein [General f	98.78
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.76
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.72
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.72
PRK14574	822	hmsH outer membrane protein; Provisional	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.71
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.71
KOG1129	478	consensus TPR repeat-containing protein [General f	98.71
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.7
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.7
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.68
KOG1310	758	consensus WD40 repeat protein [General function pr	98.67
PF13371	73	TPR_9: Tetratricopeptide repeat	98.66
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.65
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.65
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.64
PF12688	120	TPR_5: Tetratrico peptide repeat	98.63
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.62
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.57
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.48
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.48
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.47
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.46
PRK14574	822	hmsH outer membrane protein; Provisional	98.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.43
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.42
KOG2076	895	consensus RNA polymerase III transcription factor	98.4
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.4
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.4
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.36
PRK11906	458	transcriptional regulator; Provisional	98.34
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.3
PF12688	120	TPR_5: Tetratrico peptide repeat	98.28
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.27
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.27
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.27
PRK15331	165	chaperone protein SicA; Provisional	98.26
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.26
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.26
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.25
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.25
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.23
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.22
KOG1129	478	consensus TPR repeat-containing protein [General f	98.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.21
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.21
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.19
PRK10803	263	tol-pal system protein YbgF; Provisional	98.18
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.17
PF13431	34	TPR_17: Tetratricopeptide repeat	98.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.16
PF13428	44	TPR_14: Tetratricopeptide repeat	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.13
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.1
KOG2003	840	consensus TPR repeat-containing protein [General f	98.09
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.09
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.08
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.07
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.04
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.03
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.03
PRK11906	458	transcriptional regulator; Provisional	98.03
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.03
PF13428	44	TPR_14: Tetratricopeptide repeat	98.01
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.99
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.97
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.95
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.93
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.9
KOG4234	271	consensus TPR repeat-containing protein [General f	97.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.86
KOG4555	175	consensus TPR repeat-containing protein [Function	97.86
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.86
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.85
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.83
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.81
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.81
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.77
PF13512	142	TPR_18: Tetratricopeptide repeat	97.76
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.76
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.75
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.75
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.72
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.71
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.64
PRK10941	269	hypothetical protein; Provisional	97.63
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.53
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.53
PF13431	34	TPR_17: Tetratricopeptide repeat	97.49
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.41
KOG3364	149	consensus Membrane protein involved in organellar	97.4
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.39
KOG1586	288	consensus Protein required for fusion of vesicles	97.37
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.36
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.34
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.3
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.29
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.23
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.22
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.2
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.2
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.17
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.14
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.12
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.1
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.06
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.02
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.99
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.95
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.95
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.94
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.93
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.93
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.93
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.92
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.89
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.89
KOG2471	696	consensus TPR repeat-containing protein [General f	96.88
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.86
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.78
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.77
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.7
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.69
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.65
PRK04841	903	transcriptional regulator MalT; Provisional	96.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.63
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.63
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.61
PLN03218	1060	maturation of RBCL 1; Provisional	96.61
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.59
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.58
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.57
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.56
PRK04841	903	transcriptional regulator MalT; Provisional	96.55
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.55
PLN03218	1060	maturation of RBCL 1; Provisional	96.55
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.51
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.45
COG2912	269	Uncharacterized conserved protein [Function unknow	96.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.42
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.34
KOG1585	308	consensus Protein required for fusion of vesicles	96.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.26
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.23
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.2
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.05
PLN03077	857	Protein ECB2; Provisional	95.98
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.98
PRK00969	508	hypothetical protein; Provisional	95.92
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.86
PLN03077	857	Protein ECB2; Provisional	95.81
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.7
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.62
KOG2471	696	consensus TPR repeat-containing protein [General f	95.58
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	95.56
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.45
PRK10941	269	hypothetical protein; Provisional	95.41
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.39
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	95.34
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.21
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.14
KOG1586	288	consensus Protein required for fusion of vesicles	95.08
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.07
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.05
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.87
KOG1585	308	consensus Protein required for fusion of vesicles	94.84
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.76
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.62
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.58
PRK00969	508	hypothetical protein; Provisional	94.57
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.56
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.47
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.44
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.44
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.34
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.29
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.27
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.27
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	94.27
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.16
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.79
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.78
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.5
COG3947	361	Response regulator containing CheY-like receiver a	93.19
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.13
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.09
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.07
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.96
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.95
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.79
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.69
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.69
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	92.65
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.56
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.33
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	92.25
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.06
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	91.99
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.85
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.67
KOG3364	149	consensus Membrane protein involved in organellar	91.07
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.03
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	90.99
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.9
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.84
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.8
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.78
PHA02537	230	M terminase endonuclease subunit; Provisional	90.77
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.7
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.69
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.29
KOG1310	758	consensus WD40 repeat protein [General function pr	90.08
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	89.98
PF04212	69	MIT: MIT (microtubule interacting and transport) d	89.74
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	89.66
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.6
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.01
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.66
COG2912	269	Uncharacterized conserved protein [Function unknow	88.56
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.52
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.48
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.46
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.44
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.25
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.68
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.55
COG3118	304	Thioredoxin domain-containing protein [Posttransla	87.4
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.25
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.12
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	86.99
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	86.98
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	86.93
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	86.92
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.9
KOG2422	665	consensus Uncharacterized conserved protein [Funct	86.78
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	86.68
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.47
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.1
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	86.1
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	85.68
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.61
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.57
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	85.54
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	85.39
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.23
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	84.78
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	84.73
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	84.62
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	84.57
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	84.43
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.13
KOG0529	421	consensus Protein geranylgeranyltransferase type I	84.06
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	83.71
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	83.42
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	83.34
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.92
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.79
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	82.16
COG5191	435	Uncharacterized conserved protein, contains HAT (H	82.04
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	82.01
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.76
cd02656	75	MIT MIT: domain contained within Microtubule Inter	81.65

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-85  Score=578.50  Aligned_cols=358  Identities=54%  Similarity=0.822  Sum_probs=333.2

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+|++.|||+||||.|+||+||+||+.||+|.+|.+..+|++|+|+|+.|||||++|||||||++.++|+|
T Consensus         8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG   87 (372)
T KOG0546|consen    8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG   87 (372)
T ss_pred             CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence            79999999999999999999999999999999999999999997778999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      |.||||.+|+||||.++|+++++|||||.||||||||||||+.+.|||||+|+|||+||.|++||+.|+++.++....|.
T Consensus        88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~  167 (372)
T KOG0546|consen   88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL  167 (372)
T ss_pred             cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             cceEeccccccCCC----CCCCCCCCCCCCCCCCCCCCCcCCC-CCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHH
Q 018089          163 ADVTITDCGEIPEG----ADDGISNFFNDGDSYPDWPADLDQT-PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRK  237 (361)
Q Consensus       163 ~~v~I~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~  237 (361)
                      .+|.|.+||++...    ..+.+...+..++.++++|+++..+ ..+.....+.++..++.|+..+++++|..|...|.+
T Consensus       168 ~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k  247 (372)
T KOG0546|consen  168 ADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRK  247 (372)
T ss_pred             cceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHH
Confidence            99999999999877    5677777888999999999776553 455667778889999999999999999999999999


Q ss_pred             HHHhhhhccccCCCCccc--hhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHH
Q 018089          238 ALRYLDICWEKEGIDEGK--SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD  315 (361)
Q Consensus       238 al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~  315 (361)
                      ++++... .+.....+..  ...+......++.|++.|-++++.+..|+..+..+++.++...+++|++++++..+.+++
T Consensus       248 ~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~  326 (372)
T KOG0546|consen  248 ALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYD  326 (372)
T ss_pred             Hhhhhcc-cccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchh
Confidence            9999876 3332222222  244667778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018089          316 AAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ  361 (361)
Q Consensus       316 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  361 (361)
                      +|+++++.+....|++..+...+...++...++++.+++.+.+||+
T Consensus       327 ~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  327 EALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             hhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999995

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-57  Score=367.02  Aligned_cols=169  Identities=63%  Similarity=1.074  Sum_probs=161.0

Q ss_pred             CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhc-CCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCT-GEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~-~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      .+|||||.+++++.|||+|.||+..+|+||+||++||. +.++.|        |.|++||||||+|||||||++.++|+|
T Consensus        40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gtG  111 (217)
T KOG0880|consen   40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGTG  111 (217)
T ss_pred             eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCCC
Confidence            38999999999999999999999999999999999999 665554        999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +.||||++|+|||+.|+|++||+|||||.|||||||||||++...|||||+|+|||||++||+++.+|++..++..+.|.
T Consensus       112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~  191 (217)
T KOG0880|consen  112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL  191 (217)
T ss_pred             CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEeccccccCCCCCCC
Q 018089          163 ADVTITDCGEIPEGADDG  180 (361)
Q Consensus       163 ~~v~I~~~~~~~~~~~~~  180 (361)
                      .++.|.+|+.+.......
T Consensus       192 e~v~I~~~g~l~~~~~~~  209 (217)
T KOG0880|consen  192 EDVVIANCGELPVEYLES  209 (217)
T ss_pred             ccEEEeecCcccccchhh
Confidence            999999999986654333

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-54  Score=329.91  Aligned_cols=167  Identities=58%  Similarity=0.995  Sum_probs=161.6

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||.|||||+|+|.++|||.||||.+++|+|++||++.|+++-   +.+|++.-|+++.|||||++|||||||+..++|+|
T Consensus        10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~---r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG   86 (177)
T KOG0879|consen   10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEY---RKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_pred             CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccc---ccCCccccccccchHHHhhhheeccCceecCCCce
Confidence            899999999999999999999999999999999999999862   13688899999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ..||||.+|+|||+.++|.+||+|||||+|++|+|+|||||..+..+||++|+|||+|++|+.++++|+++++..+..|.
T Consensus        87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK  166 (177)
T KOG0879|consen   87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK  166 (177)
T ss_pred             EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEeccccc
Q 018089          163 ADVTITDCGE  172 (361)
Q Consensus       163 ~~v~I~~~~~  172 (361)
                      .+|.|..|+.
T Consensus       167 l~v~i~qCGe  176 (177)
T KOG0879|consen  167 LPVVIVQCGE  176 (177)
T ss_pred             CcEEEeeccc
Confidence            9999999985

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.9e-50  Score=328.37  Aligned_cols=164  Identities=59%  Similarity=1.015  Sum_probs=159.8

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.+|.||+++.|++...|||+++|..+..|+|++||+.||.+.+|+|        |+|+.||||||.||+||||++.++|
T Consensus       134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng  205 (298)
T KOG0111|consen  134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG  205 (298)
T ss_pred             hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence            67999999999999999999999999999999999999999999997        9999999999999999999999999


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +||.||||.+|.|||+.|+|..+|+|||||+|+|++||||||++....|||++|+|||.|++|+++++++++..+.+ +.
T Consensus       206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsks-gk  284 (298)
T KOG0111|consen  206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKS-GK  284 (298)
T ss_pred             CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988877 89


Q ss_pred             cccceEecccccc
Q 018089          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~~  173 (361)
                      |...|.|.+|+.+
T Consensus       285 p~qkv~i~~cge~  297 (298)
T KOG0111|consen  285 PQQKVKIVECGEI  297 (298)
T ss_pred             cceEEEEEecccc
Confidence            9999999999875

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=4.1e-47  Score=330.86  Aligned_cols=175  Identities=38%  Similarity=0.625  Sum_probs=159.6

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecC-ceEEeCcCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKG-FMIQGGDISAGDG   80 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~-~~iq~G~~~~~~~   80 (361)
                      ++|+|||||+|++.+.|+|+||||.+.||+||+||++||++.++.+...|..++|+|+.||||+++ |+|||||+..   
T Consensus        51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---  127 (249)
T PTZ00221         51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---  127 (249)
T ss_pred             CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---
Confidence            478999999999999999999999999999999999999988776554566667999999999986 8999999763   


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                       ++.+++|.+|+||++.++|+++|+|+|++.+||++||||||++.+.|+||++|+|||+|++||++|++|++++++..+.
T Consensus       128 -~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~gr  206 (249)
T PTZ00221        128 -FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGR  206 (249)
T ss_pred             -CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence             2457889999999999999999999999999999999999999999999999999999999999999999999887789


Q ss_pred             cccceEeccccccCCCCCCC
Q 018089          161 PIADVTITDCGEIPEGADDG  180 (361)
Q Consensus       161 P~~~v~I~~~~~~~~~~~~~  180 (361)
                      |..+|+|.+|+++..+.+..
T Consensus       207 P~~~V~I~~Cgvl~~~~p~~  226 (249)
T PTZ00221        207 PLLPVTVSFCGALTGEKPPG  226 (249)
T ss_pred             CCCCeEEEECeEecCCCCCc
Confidence            99999999999997664443

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-49  Score=294.32  Aligned_cols=153  Identities=54%  Similarity=0.853  Sum_probs=145.2

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      .|.|+|+++     +|.|++|||-..||+||.||..|++.+           ||+|+.|||||++|||||||++ ++|.|
T Consensus         9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPT-GTGRG   71 (164)
T KOG0881|consen    9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPT-GTGRG   71 (164)
T ss_pred             CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCC-CCCCC
Confidence            578888877     899999999999999999999999987           9999999999999999999988 78999


Q ss_pred             CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |.||||.+|+||- .+|+|...|+|||||.|||+|||||||++.+.++|||+|++||+|..||+++..+-.+.+++.++|
T Consensus        72 GaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRP  151 (164)
T KOG0881|consen   72 GASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRP  151 (164)
T ss_pred             ccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCC
Confidence            9999999999995 589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEeccccc
Q 018089          162 IADVTITDCGE  172 (361)
Q Consensus       162 ~~~v~I~~~~~  172 (361)
                      ..++.|.....
T Consensus       152 i~~~kIika~~  162 (164)
T KOG0881|consen  152 IDEVKIIKAYP  162 (164)
T ss_pred             ccceeeEeeec
Confidence            99999977643

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=2.8e-46  Score=312.51  Aligned_cols=164  Identities=67%  Similarity=1.132  Sum_probs=152.9

Q ss_pred             CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC
Q 018089            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      |+||||+.|+|++.|+|+||||.+.||+||+||++||++.++.+.   +..+|+|+.||||+|+|+|||||+..++|+++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~   77 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG   77 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence            789999999999999999999999999999999999987544221   33489999999999999999999887788999


Q ss_pred             CccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCccc
Q 018089           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (361)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~  163 (361)
                      .++||.+|++|+..++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||++++|++++++ ++.|..
T Consensus        78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~  156 (164)
T cd01926          78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK  156 (164)
T ss_pred             CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence            9999999999998999999999999999999999999999999999999999999999999999999999998 789999


Q ss_pred             ceEecccc
Q 018089          164 DVTITDCG  171 (361)
Q Consensus       164 ~v~I~~~~  171 (361)
                      +|+|.+|+
T Consensus       157 ~i~I~~cG  164 (164)
T cd01926         157 KVVIADCG  164 (164)
T ss_pred             CeEEEECC
Confidence            99999986

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=2e-46  Score=317.73  Aligned_cols=170  Identities=59%  Similarity=0.970  Sum_probs=156.6

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.+|.|||||++++++.|+|+||||.+.+|+||+||++||+++...   .|.+..|++|.||||+|+|+|||||+..++|
T Consensus        16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g   92 (186)
T PLN03149         16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG   92 (186)
T ss_pred             CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence            4579999999999999999999999999999999999999875321   1323359999999999999999999877889


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEe-cChHHHHHHhccCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~-~g~~vl~~i~~~~~~~~~  159 (361)
                      +|+.++||..|++|++.++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|+ +||+++++|++++++..+
T Consensus        93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~  172 (186)
T PLN03149         93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN  172 (186)
T ss_pred             CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence            9999999999999998999999999999999999999999999999999999999999999 799999999999998889


Q ss_pred             CcccceEecccccc
Q 018089          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~~  173 (361)
                      .|..+|+|.+|+++
T Consensus       173 ~P~~~i~I~~cG~~  186 (186)
T PLN03149        173 RPKLACVISECGEM  186 (186)
T ss_pred             CCcCCeEEEeCEeC
Confidence            99999999999864

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=7.7e-46  Score=314.06  Aligned_cols=170  Identities=62%  Similarity=1.018  Sum_probs=157.0

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.+|+||||++|++++.|+|+||||.+.||.||+||++||++.+...  .|+..+|+||.||||+|+|+|||||+..+.|
T Consensus        13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g   90 (183)
T PTZ00060         13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG   90 (183)
T ss_pred             CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence            35899999999999999999999999999999999999998764321  3455699999999999999999999987789


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +++.++||..+++|+..++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||+++++|+..++. .+.
T Consensus        91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~  169 (183)
T PTZ00060         91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY  169 (183)
T ss_pred             CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence            9999999999999998999999999999999999999999999999999999999999999999999999998875 478


Q ss_pred             cccceEecccccc
Q 018089          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~~  173 (361)
                      |..+|.|.+|+++
T Consensus       170 P~~~v~I~~cg~~  182 (183)
T PTZ00060        170 PKKPVVVTDCGEL  182 (183)
T ss_pred             CcCCeEEEEeEEc
Confidence            9999999999986

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-46  Score=300.66  Aligned_cols=145  Identities=52%  Similarity=0.833  Sum_probs=130.7

Q ss_pred             CCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCC
Q 018089           13 GVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFE   92 (361)
Q Consensus        13 ~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~   92 (361)
                      ..++.|+|+|+||++.||+||+||++||+.+           ||+|+.||||||+|||||||++.+.|+|++   +.+|+
T Consensus         4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~   69 (158)
T COG0652           4 LETNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFK   69 (158)
T ss_pred             eeccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCc
Confidence            3477999999999999999999999999975           999999999999999999999987788888   58899


Q ss_pred             CCCcCCCCCC--ceEEEeeeCC-CCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC----CCcccce
Q 018089           93 DENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADV  165 (361)
Q Consensus        93 ~e~~~~~~~~--~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~----~~P~~~v  165 (361)
                      +|++...|++  +|+|||||++ |||+||||||++.+.|+||++|+|||+|++||++|++|++..+...    +.|..++
T Consensus        70 ~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~  149 (158)
T COG0652          70 DENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPV  149 (158)
T ss_pred             ccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCe
Confidence            9999888887  9999999999 9999999999999999999999999999999999999999877653    3455666


Q ss_pred             Eecccc
Q 018089          166 TITDCG  171 (361)
Q Consensus       166 ~I~~~~  171 (361)
                      .|.+..
T Consensus       150 ~i~~~~  155 (158)
T COG0652         150 KILSVK  155 (158)
T ss_pred             EEeeee
Confidence            666544

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=8.3e-43  Score=289.59  Aligned_cols=152  Identities=47%  Similarity=0.798  Sum_probs=142.3

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+. ++|+++.+++|..+++|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E   73 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE   73 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcc
Confidence            45999999999999999999999999976           8999999999999999999986 67889999999999999


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEecccccc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI  173 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~~  173 (361)
                      .. .++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|..+++|.++.++
T Consensus        74 ~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~  153 (159)
T cd01923          74 FKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF  153 (159)
T ss_pred             cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence            54 67899999999999999999999999999999999999999999999999999999998888999999999999998


Q ss_pred             CCCCC
Q 018089          174 PEGAD  178 (361)
Q Consensus       174 ~~~~~  178 (361)
                      ..+++
T Consensus       154 ~dpf~  158 (159)
T cd01923         154 VDPFE  158 (159)
T ss_pred             eCCCC
Confidence            76643

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=8.2e-43  Score=286.17  Aligned_cols=143  Identities=58%  Similarity=0.889  Sum_probs=135.3

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+++           ||+|+.||||+|||+|||||+. ++|+++.++||.+|++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e   71 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE   71 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence            56899999999999999999999999986           9999999999999999999976 67888999999999999


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEecc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~  169 (361)
                      .. .++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|..+|+|.+
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            76 7889999999999999999999999999999999999999999999999999999999988899999999975

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=1.7e-42  Score=285.57  Aligned_cols=144  Identities=51%  Similarity=0.860  Sum_probs=136.0

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+++           ||+|+.||||+++|+|||||+. ++|+++.++||.+|++|
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e   74 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDE   74 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccc
Confidence            45999999999999999999999999986           9999999999999999999986 67888889999999999


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEeccc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC  170 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~  170 (361)
                      .. .++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||++++|++++++.++.|..+|+|.++
T Consensus        75 ~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~  151 (153)
T cd01928          75 FRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDV  151 (153)
T ss_pred             cccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEe
Confidence            76 57888999999999999999999999999999999999999999999999999999999888999999999876

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=3.1e-42  Score=281.88  Aligned_cols=141  Identities=57%  Similarity=0.885  Sum_probs=132.8

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+++           ||+|+.||||+|+|+|||||+. ++|.++.++||.+|++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e   71 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE   71 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence            56999999999999999999999999986           9999999999999999999976 56888889999999999


Q ss_pred             C-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEec
Q 018089           95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT  168 (361)
Q Consensus        95 ~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~  168 (361)
                      . ..++|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||+++++|++++++ ++.|..+|+|.
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~  145 (146)
T cd01922          72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL  145 (146)
T ss_pred             cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence            4 5789999999999999999999999999999999999999999999999999999999998 68999999885

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=6.8e-42  Score=286.38  Aligned_cols=153  Identities=40%  Similarity=0.663  Sum_probs=139.5

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCC------
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG------   88 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~------   88 (361)
                      |+.|+|+||||.+.||+||+||++||+++           ||+|+.||||+++|+|||||+. ++|+++.++++      
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~   71 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ   71 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence            46899999999999999999999999986           9999999999999999999986 56778877765      


Q ss_pred             -CCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCC-CCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccce
Q 018089           89 -LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV  165 (361)
Q Consensus        89 -~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~-~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v  165 (361)
                       ..|++|.. .++|+++|+|+||+.++++++|||||++.+ .|+||++|+|||+|++||+++++|+.++++.++.|..+|
T Consensus        72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i  151 (166)
T cd01921          72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI  151 (166)
T ss_pred             CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence             35777764 688999999999999999999999999975 799999999999999999999999999998889999999


Q ss_pred             EeccccccCCCCCC
Q 018089          166 TITDCGEIPEGADD  179 (361)
Q Consensus       166 ~I~~~~~~~~~~~~  179 (361)
                      +|..+.++..++++
T Consensus       152 ~I~~~~i~~~pf~~  165 (166)
T cd01921         152 RIKHTHILDDPFPD  165 (166)
T ss_pred             EEEEEEEECCCCCC
Confidence            99999999877654

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-42  Score=307.74  Aligned_cols=155  Identities=45%  Similarity=0.790  Sum_probs=146.5

Q ss_pred             EEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCcc
Q 018089            7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESI   86 (361)
Q Consensus         7 ~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~   86 (361)
                      |+.+.   ++.|.+-|||+.|.+|++|+||+.||+.+           ||+|+.|||.|++|||||||++ ++|.||.||
T Consensus       279 yvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSi  343 (518)
T KOG0883|consen  279 YVRLV---TNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPT-GTGRGGESI  343 (518)
T ss_pred             eEEEe---ccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCC-CCCCCCccc
Confidence            44444   56899999999999999999999999987           9999999999999999999987 789999999


Q ss_pred             CCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccce
Q 018089           87 YGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV  165 (361)
Q Consensus        87 ~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v  165 (361)
                      +|.+|.||+. .|+|+.+|+|||||+|||||||||||+..++.|||++|++||+|+.|+++|.+|+++++++.++|..+|
T Consensus       344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I  423 (518)
T KOG0883|consen  344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEI  423 (518)
T ss_pred             cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccce
Confidence            9999999975 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccccccCCC
Q 018089          166 TITDCGEIPEG  176 (361)
Q Consensus       166 ~I~~~~~~~~~  176 (361)
                      .|..+.+...+
T Consensus       424 ~i~~~~VFVdP  434 (518)
T KOG0883|consen  424 KIEDAIVFVDP  434 (518)
T ss_pred             EEeeeEEeeCc
Confidence            99999888554

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-42  Score=281.09  Aligned_cols=164  Identities=61%  Similarity=1.034  Sum_probs=155.6

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEE---eecCceEEeCcCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR---VIKGFMIQGGDISA   77 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~r---v~~~~~iq~G~~~~   77 (361)
                      |.+|.||||++++++++|+++++||.+..|+|++||..||++.++++        |++..|||   .+++||+||||++.
T Consensus         1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~   72 (167)
T KOG0865|consen    1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTC   72 (167)
T ss_pred             CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCcccc
Confidence            78999999999999999999999999999999999999999887775        99999999   34579999999999


Q ss_pred             CCCCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCC
Q 018089           78 GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD  157 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~  157 (361)
                      ++|+|+.||||++|+|||+.++|..||+|+|||.||+++||||||++....|||++|+|||+|.+||+++++++...+.+
T Consensus        73 hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~  152 (167)
T KOG0865|consen   73 HNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRN  152 (167)
T ss_pred             cCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999977655


Q ss_pred             CCCcccceEecccccc
Q 018089          158 NDCPIADVTITDCGEI  173 (361)
Q Consensus       158 ~~~P~~~v~I~~~~~~  173 (361)
                       +.+...+.|.+|+.+
T Consensus       153 -gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  153 -GKTSKKITIADCGQL  167 (167)
T ss_pred             -CcccccEEEecCCcC
Confidence             889999999999864

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-41  Score=307.50  Aligned_cols=152  Identities=54%  Similarity=0.809  Sum_probs=143.6

Q ss_pred             EEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCC
Q 018089            9 DISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG   88 (361)
Q Consensus         9 ~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~   88 (361)
                      +-+|-.+++|+|.|.||++.||+||+||-..|+.+           ||+|..|||||+|||||+||+. ++|+||.||+|
T Consensus       405 ~~aiihtt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg  472 (558)
T KOG0882|consen  405 KAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWG  472 (558)
T ss_pred             cceEEEecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCC-CCCCCCccccc
Confidence            34555678999999999999999999999999987           9999999999999999999987 89999999999


Q ss_pred             CCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEe
Q 018089           89 LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI  167 (361)
Q Consensus        89 ~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I  167 (361)
                      ..|+||.. .|.|++|.+|||||.||||||||||||+.+.|||||+|+|||+|..||+|++.|+++.++..++|..++.|
T Consensus       473 ~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~i  552 (558)
T KOG0882|consen  473 KDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKI  552 (558)
T ss_pred             ccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeE
Confidence            99999975 79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q 018089          168 TDCGE  172 (361)
Q Consensus       168 ~~~~~  172 (361)
                      .+..+
T Consensus       553 inisv  557 (558)
T KOG0882|consen  553 INISV  557 (558)
T ss_pred             EEEec
Confidence            87653

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-41  Score=252.38  Aligned_cols=150  Identities=48%  Similarity=0.770  Sum_probs=140.6

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      +..|+|.||||-+-+|+||+||+.||...           ||+|++|||-++|||+|+||++ .+|.||.||+|.+|+||
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede   74 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDE   74 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHH
Confidence            44899999999999999999999999886           9999999999999999999987 67999999999999999


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC-CCcccceEeccccc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE  172 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~  172 (361)
                      .. -|+|+.+|+|||||.||++++|||||+.+..||||-+|+|||+|++|+|.+++|+.+++++. .+|..++.|.+...
T Consensus        75 ~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti  154 (161)
T KOG0884|consen   75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_pred             HHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence            76 59999999999999999999999999999999999999999999999999999999999886 89999999988876


Q ss_pred             cCCC
Q 018089          173 IPEG  176 (361)
Q Consensus       173 ~~~~  176 (361)
                      -..+
T Consensus       155 hanp  158 (161)
T KOG0884|consen  155 HANP  158 (161)
T ss_pred             ecCc
Confidence            5433

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=3.3e-40  Score=277.07  Aligned_cols=160  Identities=39%  Similarity=0.692  Sum_probs=144.6

Q ss_pred             EEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCC
Q 018089            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (361)
Q Consensus         5 ~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (361)
                      .|.|++     +.|+|+||||.+.+|+||+||++||+.+           ||+|+.||||+|+|+|||||+. ++|+++.
T Consensus         7 ~v~i~T-----s~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~   69 (171)
T cd01925           7 KVILKT-----TAGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT-GTGTGGE   69 (171)
T ss_pred             EEEEEE-----ccccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence            555555     4899999999999999999999999986           8999999999999999999976 6788999


Q ss_pred             ccCCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEec-ChHHHHHHhccCCCCCCCcc
Q 018089           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~-g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ++||.+|++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|+. ++.++++|+.+.++.++.|.
T Consensus        70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~  149 (171)
T cd01925          70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV  149 (171)
T ss_pred             ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence            999999999965 5789999999999999999999999999999999999999999983 56778999999998888999


Q ss_pred             cceEeccccccCCCCCCCC
Q 018089          163 ADVTITDCGEIPEGADDGI  181 (361)
Q Consensus       163 ~~v~I~~~~~~~~~~~~~~  181 (361)
                      .+++|.+|.++..++++-+
T Consensus       150 ~~i~I~~~~i~~~pf~~~~  168 (171)
T cd01925         150 YPPKITSVEVLENPFDDIV  168 (171)
T ss_pred             CCeEEEEEEEEcCCchhhc
Confidence            9999999999877655543

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=2.3e-39  Score=275.32  Aligned_cols=152  Identities=31%  Similarity=0.498  Sum_probs=132.0

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ++.|.|++     +.|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+....+  
T Consensus        28 ~~~v~l~T-----~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~--   89 (190)
T PRK10903         28 DPHVLLTT-----SAGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ--   89 (190)
T ss_pred             CcEEEEEe-----ccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCC--
Confidence            45666654     4899999999999999999999999976           99999999999999999999764322  


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCC-CCCCCcceEeecCCCCCCCC-----CceEEeEEecChHHHHHHhccCCC
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTG  156 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld~-----~~~vfG~v~~g~~vl~~i~~~~~~  156 (361)
                       ...++.+|.+|.....|+.+|+|+||+.+ |+++||||||++++.|+||+     +|+|||+|++|||++++|++++++
T Consensus        90 -~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~  168 (190)
T PRK10903         90 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  168 (190)
T ss_pred             -CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence             23346778888766667889999999976 99999999999999999984     899999999999999999999987


Q ss_pred             C----CCCcccceEecccccc
Q 018089          157 D----NDCPIADVTITDCGEI  173 (361)
Q Consensus       157 ~----~~~P~~~v~I~~~~~~  173 (361)
                      .    .+.|..++.|.+|.++
T Consensus       169 ~~~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        169 DVGPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             CCCCCCCcccCCeEEEEEEEe
Confidence            5    4689999999998765

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=1.3e-38  Score=264.76  Aligned_cols=144  Identities=35%  Similarity=0.592  Sum_probs=124.2

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+|+||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+..+.+.   ..++.+|++|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e   71 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE   71 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence            56999999999999999999999999986           999999999999999999997644332   2246678888


Q ss_pred             CcCCCCCCceEEEeeeCC-CCCCCcceEeecCCCCCCC-------C-CceEEeEEecChHHHHHHhccCCCCC----CCc
Q 018089           95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLD-------G-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCP  161 (361)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld-------~-~~~vfG~v~~g~~vl~~i~~~~~~~~----~~P  161 (361)
                      .....++.+|+||||+.+ |++++|||||++.+.++||       + +|+|||+|++||+++++|+.++++.+    +.|
T Consensus        72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P  151 (164)
T PRK10791         72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP  151 (164)
T ss_pred             ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence            544445688999999986 9999999999999988776       3 79999999999999999999998763    689


Q ss_pred             ccceEeccccc
Q 018089          162 IADVTITDCGE  172 (361)
Q Consensus       162 ~~~v~I~~~~~  172 (361)
                      ..+|.|.++.+
T Consensus       152 ~~~v~I~~~~i  162 (164)
T PRK10791        152 KEDVIIESVTV  162 (164)
T ss_pred             CCCeEEEEEEE
Confidence            99999998754

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=3.4e-38  Score=260.84  Aligned_cols=141  Identities=37%  Similarity=0.530  Sum_probs=123.2

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+....+.   ..++.++.+|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e   69 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE   69 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence            56899999999999999999999999976           999999999999999999998744322   2346678888


Q ss_pred             CcCCCCCCceEEEeeeCC-CCCCCcceEeecCCCCCCCC-----CceEEeEEecChHHHHHHhccCCCCC----CCcccc
Q 018089           95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIAD  164 (361)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld~-----~~~vfG~v~~g~~vl~~i~~~~~~~~----~~P~~~  164 (361)
                      .....|+++|+||||+.+ |++++|||||++.+.|+||+     +|+|||+|++||+++++|++++++..    +.|..+
T Consensus        70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~  149 (155)
T cd01920          70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD  149 (155)
T ss_pred             ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence            766667899999999976 99999999999999999995     79999999999999999999999764    578878


Q ss_pred             eEecc
Q 018089          165 VTITD  169 (361)
Q Consensus       165 v~I~~  169 (361)
                      |.|.+
T Consensus       150 v~i~~  154 (155)
T cd01920         150 VIIES  154 (155)
T ss_pred             eEEEE
Confidence            77754

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=2.9e-36  Score=253.39  Aligned_cols=127  Identities=35%  Similarity=0.562  Sum_probs=111.2

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC-------------
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT-------------   81 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~-------------   81 (361)
                      |+.|+|+|+||++.||+||+||++||+.+           ||+|+.||||+++|||||||+... ++             
T Consensus         4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~   71 (176)
T cd01924           4 TDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTI   71 (176)
T ss_pred             cccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccc
Confidence            57899999999999999999999999976           999999999999999999998643 21             


Q ss_pred             --------CCCccCCCCCC-----CCCcCCCCCCceEEEeeeCC--CCCCCcceEeecC-------CCCCCCCCceEEeE
Q 018089           82 --------GGESIYGLKFE-----DENFELKHERKGMLSMANAG--PNTNGSQFFITTT-------RTSHLDGKHVVFGR  139 (361)
Q Consensus        82 --------~~~~~~~~~~~-----~e~~~~~~~~~g~~~~~~~~--~~~~~sqF~i~~~-------~~~~ld~~~~vfG~  139 (361)
                              ++.++|+.++.     +++..++|+.+|+|+||+.+  |+|++|||||++.       +.|+||++|+|||+
T Consensus        72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~  151 (176)
T cd01924          72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY  151 (176)
T ss_pred             cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence                    12346665543     55677889999999999988  6999999999998       78999999999999


Q ss_pred             EecChHHHHHHhcc
Q 018089          140 VIKGMGVVRSIEHV  153 (361)
Q Consensus       140 v~~g~~vl~~i~~~  153 (361)
                      |++|||++++|...
T Consensus       152 VveG~dvl~~I~~g  165 (176)
T cd01924         152 VTDGLDILRELKVG  165 (176)
T ss_pred             EecCHHHHHhhcCC
Confidence            99999999999753

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=1.1e-35  Score=245.11  Aligned_cols=141  Identities=62%  Similarity=0.969  Sum_probs=128.7

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+|+||.+.+|++|+||++||+++           +|+|+.||||+|+++|||||+....+.+  +.++.++++|
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E   70 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDE   70 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCc
Confidence            44799999999999999999999999987           8999999999999999999987543322  4568889999


Q ss_pred             CcCCC-CCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEec
Q 018089           95 NFELK-HERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT  168 (361)
Q Consensus        95 ~~~~~-~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~  168 (361)
                      ..... |+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|++++++|...+++.++.|..+|+|.
T Consensus        71 ~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~  145 (146)
T cd00317          71 NFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS  145 (146)
T ss_pred             cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence            87655 899999999999999999999999999999999999999999999999999999999889999999985

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-36  Score=264.37  Aligned_cols=161  Identities=39%  Similarity=0.670  Sum_probs=145.1

Q ss_pred             EEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCC
Q 018089            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (361)
Q Consensus         5 ~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (361)
                      .|.|.++     .|+|.||||...||++|.||++||..+           ||+||.|||++|||.+||||++ ++|+||.
T Consensus        14 kvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~-~~gtGge   76 (439)
T KOG0885|consen   14 KVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPT-GTGTGGE   76 (439)
T ss_pred             eEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCC-CCCCCcc
Confidence            5666665     899999999999999999999999987           9999999999999999999987 7899999


Q ss_pred             ccCCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEec-ChHHHHHHhccCCCCCCCcc
Q 018089           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~-g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ||||.+|.+|.. .+..+++|+|+||+.+.+.||||||+|+++.|+|++++++||+|+. ..=.+..|..+.++.+++|.
T Consensus        77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~  156 (439)
T KOG0885|consen   77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV  156 (439)
T ss_pred             ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence            999999999965 6888999999999999999999999999999999999999999983 22336778888888889999


Q ss_pred             cceEeccccccCCCCCCCCC
Q 018089          163 ADVTITDCGEIPEGADDGIS  182 (361)
Q Consensus       163 ~~v~I~~~~~~~~~~~~~~~  182 (361)
                      .+..|.++.++..++.+..+
T Consensus       157 ~p~kI~s~EV~~npFdDI~p  176 (439)
T KOG0885|consen  157 DPPKIKSVEVLINPFDDIKP  176 (439)
T ss_pred             CccceeeeEeecCchhhcch
Confidence            99999999999777666544

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=4.6e-35  Score=244.01  Aligned_cols=151  Identities=50%  Similarity=0.839  Sum_probs=131.2

Q ss_pred             EEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC-Cc
Q 018089            7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG-ES   85 (361)
Q Consensus         7 ~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~-~~   85 (361)
                      ||+|+.++  +|+|+||||++.||++|+||++||+.+           +|+|+.||||+|+++||||++....+.+. ..
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~   67 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS   67 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence            78898765  899999999999999999999999976           89999999999999999999875433111 12


Q ss_pred             cCCCCCCCCCc-CCCCCCceEEEeeeCC--CCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           86 IYGLKFEDENF-ELKHERKGMLSMANAG--PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~--~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ..+.++++|.. ...++++|+|+|++.+  +++++|||||++.+.|+||++|+|||+|++|++++++|+..+++.  .|.
T Consensus        68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~  145 (155)
T PF00160_consen   68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPK  145 (155)
T ss_dssp             TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBS
T ss_pred             cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccC
Confidence            33556888874 4445599999999986  899999999999999999999999999999999999999988876  899


Q ss_pred             cceEeccccc
Q 018089          163 ADVTITDCGE  172 (361)
Q Consensus       163 ~~v~I~~~~~  172 (361)
                      .+|+|.+|++
T Consensus       146 ~~v~I~~cgv  155 (155)
T PF00160_consen  146 QDVTISSCGV  155 (155)
T ss_dssp             STEEEEEEEE
T ss_pred             CCeEEEEeEC
Confidence            9999999974

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-33  Score=245.01  Aligned_cols=154  Identities=39%  Similarity=0.635  Sum_probs=142.3

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCC-----
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGL-----   89 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~-----   89 (361)
                      |++|+|+|+||-+.+|.||.||++||+-.           ||+.|.||.|..+|.+|+||++ ++|.||.||||.     
T Consensus         7 TtlGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q   74 (479)
T KOG0415|consen    7 TTLGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ   74 (479)
T ss_pred             eecccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence            34999999999999999999999999987           9999999999999999999998 699999999863     


Q ss_pred             --CCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCC-CCCCCceEEeEEecChHHHHHHhccCCCCCCCcccce
Q 018089           90 --KFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTS-HLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV  165 (361)
Q Consensus        90 --~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~-~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v  165 (361)
                        .|+.|. +.++|.+.|+|||++.|.+-+|||||||++.+- .|||+|+|||+|.+|++++.+|...-++....|..+|
T Consensus        75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI  154 (479)
T KOG0415|consen   75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI  154 (479)
T ss_pred             chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence              367775 479999999999999999999999999999874 8999999999999999999999999999999999999


Q ss_pred             EeccccccCCCCCCC
Q 018089          166 TITDCGEIPEGADDG  180 (361)
Q Consensus       166 ~I~~~~~~~~~~~~~  180 (361)
                      +|...-++..+++++
T Consensus       155 RI~HTiiLdDPFddp  169 (479)
T KOG0415|consen  155 RIKHTIILDDPFDDP  169 (479)
T ss_pred             eeeeeEEecCCCCCc
Confidence            999999998887665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.1e-24  Score=198.36  Aligned_cols=158  Identities=34%  Similarity=0.467  Sum_probs=145.8

Q ss_pred             CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +....+++++.|...++.||.+|+.|+|..|...|++|+.++++....+.   ++..........+++|+|.||+++++|
T Consensus       197 ~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~---ee~~~~~~~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  197 WKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE---EEQKKAEALKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             cccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH---HHHHHHHHHHHHHhhHHHHHHHhhhhH
Confidence            45556679999999999999999999999999999999998876544332   445556777889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      .+|+..|+++|+++|.|+||+||+|.|+..+|+|+.|+.+|+++++++|+|+.+...|..|+++.++++.++|++|++||
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 018089          361 Q  361 (361)
Q Consensus       361 ~  361 (361)
                      .
T Consensus       354 ~  354 (397)
T KOG0543|consen  354 A  354 (397)
T ss_pred             h
Confidence            5

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=1.5e-22  Score=177.55  Aligned_cols=125  Identities=34%  Similarity=0.485  Sum_probs=120.6

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      +....|+.++..||.+.+.++|.+|+..|.+||.                  ++|.++..|.|||.+|.+||+|+.|+++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkD  137 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKD  137 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------cCCCcchHHHHHHHHHHHhcchHHHHHH
Confidence            5677899999999999999999999999999999                  8999999999999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      |+.||.+||.++|+|.|+|.+|+.+|++++|++.|+++++++|+|+..+..|..++.++.+.+
T Consensus       138 ce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  138 CESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999887654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=6e-20  Score=156.12  Aligned_cols=161  Identities=29%  Similarity=0.333  Sum_probs=153.2

Q ss_pred             CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +..+-++++..+..+...||.+|+.|+|.+|..+|..|+..+....-.+.+.+.++..++.....++.|.++|++..++|
T Consensus       167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~  246 (329)
T KOG0545|consen  167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY  246 (329)
T ss_pred             ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence            56778888999999999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                      -++++.|..+|..+|.|.||||++|.++...-+.++|.++|.++++++|.- +.+...|..+..++.+.+++++-.+++|
T Consensus       247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~km  326 (329)
T KOG0545|consen  247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKM  326 (329)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999985 4688899999999999999999999999


Q ss_pred             cC
Q 018089          360 FQ  361 (361)
Q Consensus       360 f~  361 (361)
                      |+
T Consensus       327 fs  328 (329)
T KOG0545|consen  327 FS  328 (329)
T ss_pred             cC
Confidence            96

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=2.3e-19  Score=148.38  Aligned_cols=137  Identities=29%  Similarity=0.392  Sum_probs=126.3

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai  284 (361)
                      ....+..+..++..||.+|++|+|.+|...|..||.+++.+             .......+|.|+|.|.++++.|+.||
T Consensus        88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-------------~~e~rsIly~Nraaa~iKl~k~e~aI  154 (271)
T KOG4234|consen   88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-------------STEERSILYSNRAAALIKLRKWESAI  154 (271)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-------------cHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence            34457789999999999999999999999999999988876             55678899999999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      .+|.+||+++|.+.+|+.|+|.+|..+..|++|+.+|++.++++|....++..+.++...+.+..++.|.
T Consensus       155 ~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  155 EDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             HHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988888877776554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.4e-16  Score=149.39  Aligned_cols=117  Identities=28%  Similarity=0.499  Sum_probs=112.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+...+..||.+|+.|+|..|+.+|.+||.                  .+|.+..+|.|||.||.+++.+..|+.+|+++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            477888999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      |+++|++.++|+|.|.++..+.+|+.|.+.|.++++++|++.++...+..|...+
T Consensus       419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999988764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.66  E-value=1.8e-16  Score=141.08  Aligned_cols=121  Identities=27%  Similarity=0.254  Sum_probs=114.3

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai  284 (361)
                      .+++++.+..+++.||.||++|.|++|+.||.+++.                  ..|.++..+.|+|.+|++++.|..|.
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia------------------~~P~NpV~~~NRA~AYlk~K~FA~AE  151 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA------------------VYPHNPVYHINRALAYLKQKSFAQAE  151 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc------------------cCCCCccchhhHHHHHHHHHHHHHHH
Confidence            456677888899999999999999999999999999                  88999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      .+|..|+.+|..+.+||.|++.+...+|...+|.++++.+++|.|++.+..+.++.+..
T Consensus       152 ~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  152 EDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999888888877765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=7.9e-16  Score=142.61  Aligned_cols=132  Identities=23%  Similarity=0.314  Sum_probs=112.7

Q ss_pred             CCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHH
Q 018089          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (361)
Q Consensus       202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (361)
                      ....+++.+.|..++..||.+|++|.|++||.+|++||+                  +.|..+..|.|||.||..+|+|+
T Consensus       105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~------------------l~p~epiFYsNraAcY~~lgd~~  166 (606)
T KOG0547|consen  105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE------------------LCPDEPIFYSNRAACYESLGDWE  166 (606)
T ss_pred             ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh------------------cCCCCchhhhhHHHHHHHHhhHH
Confidence            345677788999999999999999999999999999999                  66666889999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHH
Q 018089          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP-NDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.+++|.+||+++|+++||++||+.++..+|++++|+.+..-..-+.. +|..+.-.+.++..+....+.+
T Consensus       167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~  237 (606)
T KOG0547|consen  167 KVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAK  237 (606)
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875444433 4666666666666555544443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=3.1e-15  Score=122.73  Aligned_cols=116  Identities=13%  Similarity=0.152  Sum_probs=110.3

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .+...|..++..|+|++|+..|++++.                  .+|.+..+|.++|.++..+|++++|+..|++++.+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVM------------------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            466789999999999999999999999                  88999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      +|.++.+++++|.++..+|++++|+..|+++++++|+++..+..++.++..+..
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988877654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.64  E-value=2.8e-15  Score=141.25  Aligned_cols=118  Identities=25%  Similarity=0.438  Sum_probs=112.6

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..++..|+.+|..|+|..|+++|++||+                  ++|.+..+|+++|.|++++|++++|+.++++|+.
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~------------------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~   64 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAID------------------LDPNNAELYADRAQANIKLGNFTEAVADANKAIE   64 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999                  8888899999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      ++|++..+|+++|.+++.+|+|++|+..|+++++++|+++.+...+..+...+...
T Consensus        65 l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999998888653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=5.4e-15  Score=134.69  Aligned_cols=132  Identities=27%  Similarity=0.439  Sum_probs=117.2

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai  284 (361)
                      .--..+..+.++..||.+|++|+|..|.++|..||.+-|.              -....+.+|.|+|.+..++|+..+||
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------------n~~~naklY~nra~v~~rLgrl~eai  307 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------------NKKTNAKLYGNRALVNIRLGRLREAI  307 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------------ccchhHHHHHHhHhhhcccCCchhhh
Confidence            3344556788899999999999999999999999993332              12346788999999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .+|+.|+.+||...+++.++|.|+..+++|++|+++|++|+++... .+++..+.+++..+++.+++
T Consensus       308 sdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRk  373 (486)
T KOG0550|consen  308 SDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRK  373 (486)
T ss_pred             hhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999876 88999999999998877764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.2e-14  Score=136.44  Aligned_cols=113  Identities=28%  Similarity=0.420  Sum_probs=109.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +...+.+||.+|..|+|+.|+.+|..||.                  ++|.+..+|.|++.||.++++|++|+.+..+.+
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~   63 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR   63 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence            45678899999999999999999999999                  888999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      +++|+++|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....|..+.
T Consensus        64 ~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   64 RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999999999999999998

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=5.1e-14  Score=125.16  Aligned_cols=108  Identities=27%  Similarity=0.433  Sum_probs=95.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .|+.+++.||.+|+.++|..|+..|.++|..-  +            .....++.+|.|||.|.+.+|+|..||.+|.+|
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c------------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--C------------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--C------------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999811  0            123367889999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      +.++|++.|+++|-|.|++.++++++|..+++..+.++-..+
T Consensus       146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            999999999999999999999999999888887777654433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.53  E-value=2.6e-13  Score=110.22  Aligned_cols=115  Identities=11%  Similarity=0.106  Sum_probs=103.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .-+.++..|..++..|+|++|...|+-+..                  ++|.+...|+|||.|+..+|+|++||..|.+|
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            356788999999999999999999999998                  99999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +.++|+++.++++.|.|++.+|+.+.|.+.|+.++.+...++.......+++.
T Consensus        96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~  148 (157)
T PRK15363         96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK  148 (157)
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence            99999999999999999999999999999999999998555444333333433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.51  E-value=3.2e-13  Score=109.42  Aligned_cols=118  Identities=15%  Similarity=0.258  Sum_probs=108.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+.....+|..++..|++++|++.+++++.                  .+|....++.++|.++..++++++|+..++++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678899999999999999999999998                  77888999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      +.++|++...++.+|.++..+|++++|+..|+++++++|++.........+...++
T Consensus        78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  133 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE  133 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999887777776665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.47  E-value=1.1e-13  Score=131.75  Aligned_cols=124  Identities=23%  Similarity=0.210  Sum_probs=108.2

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+.++.++||.+-..+.|+.|+.+|.+|+.                  +.|..+.++.|+|.+|..+|..+-||..|++
T Consensus       250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr  311 (966)
T KOG4626|consen  250 NFLDAYINLGNVYKEARIFDRAVSCYLRALN------------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKR  311 (966)
T ss_pred             cchHHHhhHHHHHHHHhcchHHHHHHHHHHh------------------cCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence            3567889999999999999999999999998                  8888888888888888888888888888888


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ||+++|....||.++|.++...|+..+|.++|.+|+.+.|+++.+..+|+.++.+....+.+
T Consensus       312 al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A  373 (966)
T KOG4626|consen  312 ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA  373 (966)
T ss_pred             HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence            88888888888888888888888888888888888888888888888888888877766555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.46  E-value=1.6e-12  Score=131.81  Aligned_cols=113  Identities=24%  Similarity=0.329  Sum_probs=102.8

Q ss_pred             CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +..+.++....+..++.+|+.+++.|+|++|+.+|+++|+                  +.|. ...|.|+|.||+++|+|
T Consensus       116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~------------------~~p~-~~~~~n~a~~~~~l~~~  176 (615)
T TIGR00990       116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE------------------CKPD-PVYYSNRAACHNALGDW  176 (615)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCc-hHHHHHHHHHHHHhCCH
Confidence            4556677778899999999999999999999999999998                  4453 56799999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      ++|+.+|++||.++|++.++|+++|.+|..+|++++|+.+|..++.+++.+.
T Consensus       177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999999999999999999999999888877544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.45  E-value=4.3e-13  Score=127.75  Aligned_cols=118  Identities=18%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+.++|..+..+|++++|+.+|++||+                  +.|..+.++.|+|.+|..+|+.+.|+++|.+|
T Consensus       387 ~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr------------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA  448 (966)
T KOG4626|consen  387 FAAAHNNLASIYKQQGNLDDAIMCYKEALR------------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA  448 (966)
T ss_pred             hhhhhhhHHHHHHhcccHHHHHHHHHHHHh------------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence            344445555555555555555555555555                  55566666666666666666666666666666


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      |.++|..++|+.++|.+|...|+.++|++.|+.|+++.|+.+.+..++.-+.+-.-
T Consensus       449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc  504 (966)
T KOG4626|consen  449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC  504 (966)
T ss_pred             HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence            66666666666666666666666666666666666666666666665555544433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.44  E-value=1.6e-12  Score=119.83  Aligned_cols=105  Identities=14%  Similarity=0.061  Sum_probs=100.9

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..+...|++++|+..|+++++                  ++|....+|+++|.++..+|++++|+..++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            467799999999999999999999999999                  88889999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      ++++|++..+++++|.++...|++++|+++|+++++++|+++.
T Consensus       125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999973

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.40  E-value=3.5e-12  Score=110.25  Aligned_cols=117  Identities=19%  Similarity=0.230  Sum_probs=104.6

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH-HhcCC--HH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK-LKLGD--LK  281 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~l~~--~~  281 (361)
                      +...++.++.|..+|..+...|++++|+..|+++++                  +.|.+..++.++|.++ ...|+  ++
T Consensus        66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------------------l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ------------------LRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            333445678899999999999999999999999999                  8899999999999985 67787  59


Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      +|+..++++++++|++..+++.+|.+++.+|+|++|+..++++++++|.+..-...+.
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765554443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.40  E-value=3.4e-13  Score=125.86  Aligned_cols=122  Identities=30%  Similarity=0.408  Sum_probs=116.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .|..+++.++.+++.+.|+.|+..|.+||+                  ++|..+..+-|+|.++++.++|..|+.++.+|
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~------------------ldpnca~~~anRa~a~lK~e~~~~Al~Da~ka   64 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIE------------------LDPNCAIYFANRALAHLKVESFGGALHDALKA   64 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHh------------------cCCcceeeechhhhhheeechhhhHHHHHHhh
Confidence            467789999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      |+++|...++|+|+|.+++.++++.+|..+|++...+.|+++.+...+.++.....+++-
T Consensus        65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f  124 (476)
T KOG0376|consen   65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF  124 (476)
T ss_pred             hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999998887544

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.4e-12  Score=111.16  Aligned_cols=116  Identities=28%  Similarity=0.380  Sum_probs=105.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .++++++.||.+|..++|..|+.+|.+||.                  ++|..+..|.|+|.||+++++|+.+..+|.+|
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~------------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC------------------INPTVASYYTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHh------------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence            578899999999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---C--CCHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE---P--NDGGIKKELAVAKKK  344 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~---p--~~~~~~~~l~~~~~~  344 (361)
                      +.++|+.++++|-+|.+.+....|++|+..+.+|..+.   |  .-.++...|..++..
T Consensus        71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            99999999999999999999999999999999996653   2  234677777777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.35  E-value=8.9e-12  Score=126.36  Aligned_cols=121  Identities=18%  Similarity=0.206  Sum_probs=78.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|++++|+..|++++.                  ++|....+|.++|.++..+|++++|+..++++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  391 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIE------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKA  391 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            456678889999999999999999999998                  44455555556666666666666666666666


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +.++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+...+++..
T Consensus       392 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~  450 (615)
T TIGR00990       392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA  450 (615)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence            66666555666666666666666666666666666666655555555555554444333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.31  E-value=6.9e-12  Score=89.16  Aligned_cols=66  Identities=36%  Similarity=0.531  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 018089          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP  329 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p  329 (361)
                      +..|.++|.+++.+++|++|+.+|+++|.++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5689999999999999999999999999999999999999999999999 79999999999999998

...

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=2.6e-12  Score=123.62  Aligned_cols=142  Identities=18%  Similarity=0.165  Sum_probs=98.2

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh-hc--cc----cCCCCccc---------hhhHHHHHHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD-IC--WE----KEGIDEGK---------SSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~-~~--~~----~~~~~~~~---------~~~~~~~~~~~~~nla~~~  274 (361)
                      ..+.|...||.|.-+++++.|++++++|+.+-+ ..  +.    +.-..++.         ....+|..-.+|+.+|.+|
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy  499 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY  499 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence            578899999999999999999999999998544 11  00    00011110         1123556666777777777


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +++++++.|.-++++|+.++|.+.......|.++.++|+.++|+..|++|+.++|.|+..+...+.+.-.+.++.++.
T Consensus       500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL  577 (638)
T ss_pred             eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777777666666665543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.27  E-value=5.7e-11  Score=93.50  Aligned_cols=111  Identities=14%  Similarity=0.117  Sum_probs=96.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+...|..+++.|+|++|++.|.+++...+               .++....+++.+|.++.+.+++++|+..++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   66 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP---------------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV   66 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            35678899999999999999999999998221               112335788999999999999999999999999


Q ss_pred             hcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 018089          292 RDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       292 ~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~  337 (361)
                      ..+|++   ..+++.+|.++..++++++|+..++++++..|++..+...
T Consensus        67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        67 KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            998875   6789999999999999999999999999999998776544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=4.3e-11  Score=110.88  Aligned_cols=120  Identities=22%  Similarity=0.238  Sum_probs=104.0

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      .-+||-+.-+++-+.|+.+|++||+                  ++|....+|..+|.-|+.+++-..|++.|.+|+.++|
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALk------------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p  395 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALK------------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP  395 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHh------------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence            4469999999999999999999999                  8888888899999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      .+-+|||.+|++|..++=..=|+-+|++|+++-|+|+.+|..|++|..++.+.+++.|
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            8888888888888888888888888888888888888888888888887777666643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=9.1e-11  Score=108.79  Aligned_cols=125  Identities=16%  Similarity=0.234  Sum_probs=118.8

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ++....|--+|..+...++-..|++.|++|++                  ++|.+-.+|+.+|++|--++...=|+-+++
T Consensus       361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd------------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD------------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh------------------cCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence            34566778899999999999999999999999                  899999999999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +|+.+-|+++..|..+|.||..+++.++|+.+|++|+.+..-+..++..|+++.+++++.+++
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999999999988899999999999999988876

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.27  E-value=6.2e-11  Score=97.22  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 018089          232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       232 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~  311 (361)
                      ...|+++++                  ++|..   +.++|.++..+|++++|+..|++++.++|.+..+|+.+|.++..+
T Consensus        13 ~~~~~~al~------------------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   71 (144)
T PRK15359         13 EDILKQLLS------------------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML   71 (144)
T ss_pred             HHHHHHHHH------------------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            356888888                  66664   668999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       312 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |++++|+..|+++++++|+++.++..++.+...+++..++.+
T Consensus        72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~  113 (144)
T PRK15359         72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE  113 (144)
T ss_pred             hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999998888777643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.24  E-value=1e-10  Score=104.86  Aligned_cols=115  Identities=22%  Similarity=0.311  Sum_probs=105.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .++.+.++|+.++.+|+|..|+.+|..|++                  .+|.+-.+++.+|.+|+.+|+-.-|+.+++++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV   98 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV   98 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence            578899999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---IKKELAVAKK  343 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~  343 (361)
                      |++.|+..-|...+|.+++.+|++++|.++|+.++.-+|++..   +...|..+.+
T Consensus        99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e  154 (504)
T KOG0624|consen   99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE  154 (504)
T ss_pred             HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999999997654   4444444433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.24  E-value=1.2e-10  Score=122.07  Aligned_cols=121  Identities=14%  Similarity=0.051  Sum_probs=80.2

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+...|..+.+.|++++|+..|+++++                  ++|.+..++.++|.++..+|++++|+..+++|++
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~------------------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~  671 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALE------------------LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK  671 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3455556666666666666666666666                  6666666677777777777777777777777777


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ++|+++.+++++|.++..+|++++|+..|+++++++|++..+....+++.......++.
T Consensus       672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a  730 (987)
T PRK09782        672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL  730 (987)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777776666666666655555444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.23  E-value=1.3e-10  Score=100.46  Aligned_cols=110  Identities=17%  Similarity=0.122  Sum_probs=102.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~  304 (361)
                      .++.++++..++++++                  .+|.+...|.++|.+|+.+|++++|+..|++|++++|++..+++.+
T Consensus        52 ~~~~~~~i~~l~~~L~------------------~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l  113 (198)
T PRK10370         52 QQTPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL  113 (198)
T ss_pred             chhHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5677888899999998                  8999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          305 GQAY-MALND--VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       305 g~~~-~~~~~--~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |.++ ...|+  +++|.+.++++++++|++..++..++.+....++.+++.
T Consensus       114 A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai  164 (198)
T PRK10370        114 ATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI  164 (198)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence            9985 67787  599999999999999999999999999999888887764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=7.2e-11  Score=113.84  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=120.9

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      --.+|+-+|.++.++++|+.|.-+|++|+.                  ++|.+..+...++..+.++|+.++|+..+++|
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhc------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence            456788899999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY  356 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~  356 (361)
                      +.++|.++-..|.+|.++..+++|++|+..|++..++.|++..+..+++++.++++....+.+..-
T Consensus       550 ~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~  615 (638)
T KOG1126|consen  550 IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS  615 (638)
T ss_pred             HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence            999999999999999999999999999999999999999999999999999999998777765543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.21  E-value=3.3e-11  Score=85.66  Aligned_cols=67  Identities=24%  Similarity=0.387  Sum_probs=64.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~  289 (361)
                      .|..+..+|..++..|+|++|+.+|+++++                  ++|.+..+++++|.|+.++| ++.+|+.++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------------------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE------------------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            477899999999999999999999999999                  89999999999999999999 79999999999


Q ss_pred             HhhcCC
Q 018089          290 AMRDGD  295 (361)
Q Consensus       290 al~~~p  295 (361)
                      +|+++|
T Consensus        64 al~l~P   69 (69)
T PF13414_consen   64 ALKLDP   69 (69)
T ss_dssp             HHHHST
T ss_pred             HHHcCc
Confidence            999998

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.21  E-value=2.1e-10  Score=97.12  Aligned_cols=110  Identities=22%  Similarity=0.193  Sum_probs=95.9

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      .....+..+...|..+...|+|++|+.+|++++++.+               ..+....++.++|.++.++|++++|+..
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~   94 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---------------DPNDRSYILYNMGIIYASNGEHDKALEY   94 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---------------ccchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3455688899999999999999999999999998321               0112356899999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhCCCC
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMALND--------------VDAAVESFEKALKLEPND  331 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~~~--------------~~~A~~~~~~a~~l~p~~  331 (361)
                      +++++.++|.+..++..+|.++..+++              +++|++.++++++++|++
T Consensus        95 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         95 YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999999999999999999888              688899999999999987

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.21  E-value=2.3e-10  Score=97.61  Aligned_cols=122  Identities=21%  Similarity=0.132  Sum_probs=82.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+.....+|..++..|++..|..-.++||+                  .+|....+|.-||..|.++|+.+.|-+.|++|
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA   95 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALE------------------HDPSYYLAHLVRAHYYQKLGENDLADESYRKA   95 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            456667788888888888888888888888                  55566666666666666666666666666666


Q ss_pred             hhcCCCc------------------------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089          291 MRDGDDN------------------------------------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       291 l~~~p~~------------------------------------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  334 (361)
                      +.++|++                                    +..|-++|.|.+..|+++.|..+|+++++++|+++..
T Consensus        96 lsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~  175 (250)
T COG3063          96 LSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA  175 (250)
T ss_pred             HhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence            6666655                                    4566666666666777777777777777777777666


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018089          335 KKELAVAKKKIHERRE  350 (361)
Q Consensus       335 ~~~l~~~~~~~~~~~~  350 (361)
                      ...+...+-+..++-.
T Consensus       176 ~l~~a~~~~~~~~y~~  191 (250)
T COG3063         176 LLELARLHYKAGDYAP  191 (250)
T ss_pred             HHHHHHHHHhcccchH
Confidence            6666666555544443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.21  E-value=1.5e-10  Score=116.95  Aligned_cols=124  Identities=9%  Similarity=0.049  Sum_probs=118.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|......|++++|...++.+++                  +.|....++.++|.++.+++++++|+..++++
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            467889999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +..+|++..+++.+|.++..+|+|++|++.|++++..+|+++.++..++.+.....+.+++.
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR  208 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888777663

>PRK12370 invasion protein regulator; Provisional

Probab=99.21  E-value=1.6e-10  Score=115.64  Aligned_cols=115  Identities=10%  Similarity=0.010  Sum_probs=55.9

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +..+|..+...|++++|+..|++|++                  ++|.+..+++++|.++..+|++++|+..++++++++
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANL------------------LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD  402 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            33444444455555555555555554                  444444455555555555555555555555555555


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-PNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~~~~  347 (361)
                      |.+..+++.++.+++.+|++++|+..++++++.+ |+++.++..++.+...+++
T Consensus       403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~  456 (553)
T PRK12370        403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK  456 (553)
T ss_pred             CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence            5544444444444444555555555555554443 3444444444444433333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.18  E-value=1.7e-10  Score=85.37  Aligned_cols=99  Identities=40%  Similarity=0.569  Sum_probs=90.6

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .+..+|..++..|++++|+..++++++                  ..|....++.++|.++..++++++|+..+++++..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALE------------------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            357789999999999999999999998                  45555578999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      .|.+..+++.+|.++..+|++++|...+.++++++|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999998873

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.18  E-value=1.6e-11  Score=110.08  Aligned_cols=157  Identities=22%  Similarity=0.254  Sum_probs=126.5

Q ss_pred             CCcccceEeccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHH
Q 018089          159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA  238 (361)
Q Consensus       159 ~~P~~~v~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~a  238 (361)
                      ..|..+..|...+++....+.+..    .+|.+          ....++.++.+...+-.+..++..|.+++|++.|..+
T Consensus        75 s~~~~~~~~d~egviepd~d~pq~----MGds~----------~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~a  140 (377)
T KOG1308|consen   75 SSPESDLEIDGEGVIEPDTDAPQE----MGDSN----------AEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSA  140 (377)
T ss_pred             CCCCcchhccCCCccccCCCcchh----hchhh----------hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccc
Confidence            445566667777777433222222    23222          2345677888999999999999999999999999999


Q ss_pred             HHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 018089          239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV  318 (361)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~  318 (361)
                      |.                  ++|....+|.+++.++++++++..|+.+|..||.++|+..+.|-.+|.+...+|++++|.
T Consensus       141 i~------------------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  141 IE------------------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             cc------------------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            99                  899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          319 ESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       319 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      .+|..+++++- ++.+-..|.++....+..
T Consensus       203 ~dl~~a~kld~-dE~~~a~lKeV~p~a~ki  231 (377)
T KOG1308|consen  203 HDLALACKLDY-DEANSATLKEVFPNAGKI  231 (377)
T ss_pred             HHHHHHHhccc-cHHHHHHHHHhccchhhh
Confidence            99999999974 455555555555444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.18  E-value=2.6e-10  Score=114.10  Aligned_cols=105  Identities=12%  Similarity=0.016  Sum_probs=93.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~  304 (361)
                      .+++++|+..+++|++                  ++|.+..++..+|.++..+|++++|+..+++|++++|+++.+++.+
T Consensus       317 ~~~~~~A~~~~~~Al~------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l  378 (553)
T PRK12370        317 QNAMIKAKEHAIKATE------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYY  378 (553)
T ss_pred             chHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3568999999999999                  8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       305 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      |.++..+|++++|+..++++++++|.+......+..+.....+
T Consensus       379 g~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~  421 (553)
T PRK12370        379 GWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG  421 (553)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence            9999999999999999999999999987665444433333333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=2.5e-10  Score=106.55  Aligned_cols=124  Identities=19%  Similarity=0.264  Sum_probs=109.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .|+.+.-.|..+|-.|++..|.+.+.++|.                  ++|....+|..||..|+...+-++-..++++|
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~------------------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A  386 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIK------------------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKA  386 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHh------------------cCcccchHHHHHHHHHhhhhccHHHHHHHHHH
Confidence            488888999999999999999999999999                  77777777999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ..+||.++..||.||+.++-+++|++|+.+|++++.|+|++......++-+.-+..+..+.+
T Consensus       387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m  448 (606)
T KOG0547|consen  387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESM  448 (606)
T ss_pred             HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887777777766666544443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.17  E-value=3.1e-10  Score=92.74  Aligned_cols=117  Identities=14%  Similarity=0.105  Sum_probs=102.9

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .-+.++..|-.+|..|+|++|...|+-...                  +++.+...|..||.|+..+++|++|+..|..|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A   97 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA   97 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678899999999999999999998887                  78888899999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      ..++++++...|+.|.||+.+|+.+.|...|+.+++ .|.+..++..-......+.
T Consensus        98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331         98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK  152 (165)
T ss_pred             HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 5777665554444444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.16  E-value=1.3e-10  Score=85.98  Aligned_cols=81  Identities=22%  Similarity=0.361  Sum_probs=72.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~  302 (361)
                      +|+|+.|+..|+++++                  ..|.  ....++++|.|++++|+|++|+..+++ +..+|.+...++
T Consensus         2 ~~~y~~Ai~~~~k~~~------------------~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLE------------------LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHH------------------HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred             CccHHHHHHHHHHHHH------------------HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence            6899999999999999                  5542  567888899999999999999999999 889999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 018089          303 RQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       303 ~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      -+|.|+..+|+|++|+..|+++
T Consensus        63 l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   63 LLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999999875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.16  E-value=1.8e-10  Score=80.82  Aligned_cols=65  Identities=25%  Similarity=0.383  Sum_probs=60.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      +.+|..+++.|+|++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999885

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.15  E-value=6.8e-10  Score=97.08  Aligned_cols=90  Identities=13%  Similarity=0.097  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      .....+.++|.++..+|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++++.|.+...+..+..+
T Consensus       133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  212 (234)
T TIGR02521       133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI  212 (234)
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34556778888888888888888888888888888888888888888888888888888888888877777777777776


Q ss_pred             HHHHHHHHHH
Q 018089          342 KKKIHERREQ  351 (361)
Q Consensus       342 ~~~~~~~~~~  351 (361)
                      ....++.++.
T Consensus       213 ~~~~~~~~~a  222 (234)
T TIGR02521       213 ARALGDVAAA  222 (234)
T ss_pred             HHHHhhHHHH
Confidence            6665555444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.15  E-value=9.4e-10  Score=96.18  Aligned_cols=121  Identities=18%  Similarity=0.138  Sum_probs=68.0

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|+|++|++.++++++                  ..|....++..+|.++..+|++++|+..+++++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al   92 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALE------------------HDPDDYLAYLALALYYQQLGELEKAEDSFRRAL   92 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55566677777777777777777777776                  333334444455555555555555555555555


Q ss_pred             hcCCCchh------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          292 RDGDDNVK------------------------------------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       292 ~~~p~~~k------------------------------------a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      ..+|.+..                                    .++.+|.++...|++++|...++++++.+|++..++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  172 (234)
T TIGR02521        93 TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL  172 (234)
T ss_pred             hhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHH
Confidence            54444444                                    455555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHH
Q 018089          336 KELAVAKKKIHERRE  350 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~  350 (361)
                      ..++.+....++.++
T Consensus       173 ~~la~~~~~~~~~~~  187 (234)
T TIGR02521       173 LELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHHHHHHcCCHHH
Confidence            555555544444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.15  E-value=4.4e-10  Score=117.86  Aligned_cols=111  Identities=16%  Similarity=0.223  Sum_probs=100.8

Q ss_pred             HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHH
Q 018089          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~  303 (361)
                      ..|++++|+..|+++++                  .+|. ..++.++|.++.++|++++|+..+++++.++|++..++.+
T Consensus       588 ~~Gr~~eAl~~~~~AL~------------------l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n  648 (987)
T PRK09782        588 IPGQPELALNDLTRSLN------------------IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA  648 (987)
T ss_pred             hCCCHHHHHHHHHHHHH------------------hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34777777777777777                  6775 7899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       304 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +|.++..+|++++|++.|+++++++|+++.++..++.+...+++.+++..
T Consensus       649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999998888776643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=1.1e-10  Score=111.06  Aligned_cols=118  Identities=16%  Similarity=0.185  Sum_probs=105.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ++...-+|..|+-.|+|+.|+.+|+.||.                  .+|.+..+|+.||.++..-.+..+||..|++||
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~------------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQ------------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL  491 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHh------------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence            34455679999999999999999999999                  999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----D------GGIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~----~------~~~~~~l~~~~~~~~~  347 (361)
                      .+.|..++++|++|.+++.+|.|++|+..|-.||.+.+.    +      ..+|..|+.+...+.+
T Consensus       492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999765    1      2488888866555443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.13  E-value=1.3e-09  Score=96.86  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=99.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...|..++..|+|+.|+..|++++...+               .++....+++++|.++..++++++|+..++++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP---------------FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            466789999999999999999999999998322               12334568899999999999999999999999


Q ss_pred             hhcCCCchh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089          291 MRDGDDNVK---ALFRQGQAYMAL--------NDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       291 l~~~p~~~k---a~~~~g~~~~~~--------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  340 (361)
                      ++.+|++..   +++.+|.++..+        +++++|+..|+++++.+|.+..+...+..
T Consensus        97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~  157 (235)
T TIGR03302        97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR  157 (235)
T ss_pred             HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence            999998876   799999999987        88999999999999999999766554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.11  E-value=7.8e-10  Score=96.12  Aligned_cols=122  Identities=19%  Similarity=0.190  Sum_probs=113.6

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..+|...+..|+|..|+..++++.+                  +.|.+..+|+.+|.+|.++|++++|...|.++++
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~  162 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAAR------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE  162 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhc------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence            3455599999999999999999999999                  8999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.|.++.+..++|..|.-.|+++.|...+.++....+.+..+..+|..+.....+..+++
T Consensus       163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence            999999999999999999999999999999999988889999999999888777666654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=1.1e-09  Score=92.29  Aligned_cols=108  Identities=20%  Similarity=0.127  Sum_probs=91.1

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+...|..++..|+|++|+..|++++.+.+               ..+....++.|+|.++..+|++++|+..|++
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---------------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---------------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3678889999999999999999999999998321               1112456899999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhhCCCCH
Q 018089          290 AMRDGDDNVKALFRQGQAYM-------ALNDVD-------AAVESFEKALKLEPNDG  332 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~-------~~~~~~-------~A~~~~~~a~~l~p~~~  332 (361)
                      ++.++|.+..++..+|.++.       .+|+++       +|+..|++++.++|.+.
T Consensus        98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999       777776       66666667888888653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.10  E-value=7.5e-10  Score=89.50  Aligned_cols=94  Identities=14%  Similarity=0.088  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .+|........+|.+++..|++++|+..+++++..+|.+..+++++|.++..+|++++|+..|+++++++|.+...+..+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            77888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+....++.+++.
T Consensus        92 a~~~~~~g~~~~A~  105 (135)
T TIGR02552        92 AECLLALGEPESAL  105 (135)
T ss_pred             HHHHHHcCCHHHHH
Confidence            99988888766653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.10  E-value=3.9e-10  Score=101.10  Aligned_cols=124  Identities=18%  Similarity=0.197  Sum_probs=104.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +......+......++|.++++.+++.++.-++              ..+.....+..++.|+.+-+++.+||+.|.++|
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~--------------~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL  334 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE--------------ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL  334 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc--------------ccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence            444455677778889999999999999982211              122234455667889999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      .++|+++.++..+|.+|+.-..|+.|+.+|++|.+++|+|..++..+..+++..++..
T Consensus       335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~  392 (504)
T KOG0624|consen  335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG  392 (504)
T ss_pred             hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999988776543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.08  E-value=6.7e-10  Score=101.56  Aligned_cols=125  Identities=24%  Similarity=0.228  Sum_probs=103.2

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...|..+.+.|++++|++.|+++++                  .+|.+..+...++.++..+|+++++.+.+...
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~  206 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALE------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRL  206 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            345677889999999999999999999999                  99999999999999999999999999999888


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ....|+++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...++.+....++.+++..
T Consensus       207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  207 LKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             HHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888899999999999999999999999999999999999999999999999998888777643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.08  E-value=2.2e-09  Score=98.91  Aligned_cols=113  Identities=19%  Similarity=0.088  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHH
Q 018089          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG  305 (361)
Q Consensus       226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g  305 (361)
                      ++.+.++..+.++|...+              ...+.....|+++|.+|..+|++++|+.+++++++++|+++.+|+.+|
T Consensus        40 ~~~e~~i~~~~~~l~~~~--------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  105 (296)
T PRK11189         40 LQQEVILARLNQILASRD--------------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLG  105 (296)
T ss_pred             hHHHHHHHHHHHHHcccc--------------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            467888999999986221              022345788999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          306 QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       306 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .++..+|++++|+..|+++++++|++..++..++.+....++.+++.
T Consensus       106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189        106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999877666665553

>PLN02789 farnesyltranstransferase

Probab=99.07  E-value=2.7e-09  Score=98.71  Aligned_cols=119  Identities=12%  Similarity=-0.032  Sum_probs=106.2

Q ss_pred             HHhhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH--HHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL--KGALL  285 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~--~~Ai~  285 (361)
                      ++..+.+..+|..+.+.+ ++++|+..+.+++.                  .+|.+..+|.+++.+..++++.  .+++.
T Consensus        68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~------------------~npknyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAE------------------DNPKNYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH------------------HCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence            345667788888888887 68999999999998                  8888899999999999999874  78899


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      .++++|+++|.|..||..++.++..+|+|++|++++.++++++|.|..++.....+...+
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999988876544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.06  E-value=1.4e-09  Score=110.70  Aligned_cols=116  Identities=15%  Similarity=0.121  Sum_probs=70.3

Q ss_pred             HHHhccHHHHhhhHHH----HHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          215 IKVFGNEHYKKQDYKM----ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      +..+|..++..|++++    |+..|+++++                  .+|.+..++.++|.++.++|++++|+..++++
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ------------------FNSDNVRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3445555555555553    4555555555                  55556666666666666666666666666666


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      +.++|++..+++.+|.++..+|++++|++.|+++++.+|++......++.+...+++.
T Consensus       311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~  368 (656)
T PRK15174        311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT  368 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence            6666666666666666666666666666666666666666654444444444444433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.06  E-value=1.5e-09  Score=110.56  Aligned_cols=117  Identities=14%  Similarity=0.115  Sum_probs=106.2

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG----ALLDTEFAMRD  293 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~----Ai~~~~~al~~  293 (361)
                      .|..+...|++++|+..|+++++                  ..|....++.++|.++..+|++++    |+..|++++++
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~------------------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALA------------------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            46677788888889888888888                  677788899999999999999996    89999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +|++..++..+|.++..+|++++|+..++++++++|+++.++..++.+....++..++.
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~  338 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS  338 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999888877766653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.4e-09  Score=103.29  Aligned_cols=122  Identities=22%  Similarity=0.255  Sum_probs=106.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      .-.+.++|-..|..+.|.+|+.++++++..++....           ..+.....+.|+|.++.+++.+++||..+++||
T Consensus       414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-----------e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL  482 (611)
T KOG1173|consen  414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-----------EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL  482 (611)
T ss_pred             chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-----------cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            455788999999999999999999999965543311           111466789999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .+.|.++.++..+|.+|.-+|+++.|++.|.+++-+.|+|..+...|..+-+.
T Consensus       483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999888888876554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.05  E-value=4.4e-09  Score=81.79  Aligned_cols=105  Identities=25%  Similarity=0.267  Sum_probs=94.6

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      ..++....+-..|..+...|+.+.|++.|.++|.                  +-|..+.+|+|+|+++.-+|+.++|+.+
T Consensus        38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~ALdD   99 (175)
T KOG4555|consen   38 QAIKASRELELKAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEALDD   99 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHHHHH
Confidence            3455677778889999999999999999999999                  7778899999999999999999999999


Q ss_pred             HHHHhhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          287 TEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       287 ~~~al~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      .++|+++.-..    ..++..+|.+|..+|+.+.|..+|+.|.++-.
T Consensus       100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            99999987544    56899999999999999999999999998854

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.99  E-value=6.1e-09  Score=84.84  Aligned_cols=96  Identities=10%  Similarity=0.005  Sum_probs=88.7

Q ss_pred             HH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 018089          259 LR-KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       259 ~~-~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~  337 (361)
                      +. +......+.+|..++..|++++|...|+.++.+||.+...|+++|.++..+|+|++|+..|.+|+.++|+|+.....
T Consensus        29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~  108 (157)
T PRK15363         29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA  108 (157)
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            44 66777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018089          338 LAVAKKKIHERREQEKK  354 (361)
Q Consensus       338 l~~~~~~~~~~~~~~k~  354 (361)
                      ++.+.-.+++...+.+.
T Consensus       109 ag~c~L~lG~~~~A~~a  125 (157)
T PRK15363        109 AAECYLACDNVCYAIKA  125 (157)
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            99999988877776443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.99  E-value=4.5e-09  Score=110.10  Aligned_cols=129  Identities=21%  Similarity=0.271  Sum_probs=108.2

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ...+..+|..+...|++++|++.|++++.                  ..|.+..++.+++.++.++|+ .+|+..+++++
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~  830 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVK------------------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL  830 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence            44566677788888888888888888887                  667778888999999999999 88999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      .+.|++...+..+|.++..+|++++|+..|+++++++|.++.++..++.+....++..++ .+.+++|.
T Consensus       831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~  898 (899)
T TIGR02917       831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA-RKELDKLL  898 (899)
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHh
Confidence            999999999999999999999999999999999999999999999999988887776655 44555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.97  E-value=6.7e-09  Score=107.84  Aligned_cols=115  Identities=14%  Similarity=0.144  Sum_probs=107.1

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+...|..+...|++.+|++.|+++++                  .+|.+..++.+++.++...|++++|+..+++++
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l  110 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS------------------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLV  110 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44578899999999999999999999999                  788888899999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      ..+|++.. ++.+|.++...|++++|+..|+++++++|++..++..++.+....
T Consensus       111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~  163 (765)
T PRK10049        111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN  163 (765)
T ss_pred             HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            99999999 999999999999999999999999999999999988888776543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.95  E-value=6.4e-09  Score=92.44  Aligned_cols=126  Identities=14%  Similarity=0.107  Sum_probs=104.8

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--------CCHHHHH
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--------GDLKGAL  284 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--------~~~~~Ai  284 (361)
                      ..+..+|..++..|+|++|+..|+++++..+               .++....+++++|.++.++        +++++|+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~  135 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---------------NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAF  135 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---------------CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence            4678899999999999999999999998322               1112234788999999876        8899999


Q ss_pred             HHHHHHhhcCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKKK  344 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~-----------------~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~~  344 (361)
                      ..+++++..+|++..++                 +.+|.+|...|++++|+..|+++++..|++   +.++..++.+...
T Consensus       136 ~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       136 EAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK  215 (235)
T ss_pred             HHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence            99999999999985442                 467888999999999999999999997764   5788999999999


Q ss_pred             HHHHHHHHH
Q 018089          345 IHERREQEK  353 (361)
Q Consensus       345 ~~~~~~~~k  353 (361)
                      +++..++.+
T Consensus       216 lg~~~~A~~  224 (235)
T TIGR03302       216 LGLKDLAQD  224 (235)
T ss_pred             cCCHHHHHH
Confidence            888777654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.94  E-value=3.2e-08  Score=91.64  Aligned_cols=113  Identities=15%  Similarity=0.088  Sum_probs=104.4

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCchh
Q 018089          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVK  299 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~~~p~~~k  299 (361)
                      .+...+++++|+..+.++|.                  ++|.+..+|.+++.++..++ ++++++..+++++..+|.+..
T Consensus        46 ~l~~~e~serAL~lt~~aI~------------------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq  107 (320)
T PLN02789         46 VYASDERSPRALDLTADVIR------------------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ  107 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence            45667899999999999999                  99999999999999999998 689999999999999999999


Q ss_pred             HHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          300 ALFRQGQAYMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       300 a~~~~g~~~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +|+.++.++..+++.  ++++..++++++++|.|-.+|...+.+...++..+++
T Consensus       108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee  161 (320)
T PLN02789        108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE  161 (320)
T ss_pred             HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH
Confidence            999999999999874  7889999999999999999999999999988876654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.94  E-value=1.6e-08  Score=91.02  Aligned_cols=112  Identities=12%  Similarity=0.083  Sum_probs=94.1

Q ss_pred             HHHHHhccHH-HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          213 DSIKVFGNEH-YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       213 ~~~~~~G~~~-~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ...+..+..+ ++.|+|++|+..|++.++..|               ..+....+++.+|.+|+.+|++++|+..|++++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP---------------~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv  207 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP---------------DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV  207 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4456667666 567999999999999998332               122336789999999999999999999999999


Q ss_pred             hcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          292 RDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       292 ~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      ...|++   ..+++.+|.++..+|++++|+..|+++++..|+...+.....
T Consensus       208 ~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~  258 (263)
T PRK10803        208 KNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK  258 (263)
T ss_pred             HHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            988874   789999999999999999999999999999999876544433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.94  E-value=1.7e-08  Score=100.55  Aligned_cols=124  Identities=12%  Similarity=0.102  Sum_probs=111.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+||.+|.+|++++|.+...++|+                  .+|....+|..||.||-++|+.++|+...-.|
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA  199 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA  199 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence            477889999999999999999999999999                  88888999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      -.++|.+..-|.+++.....+|.+++|.-+|.+|++++|.+.........+.++.++.+++.
T Consensus       200 AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am  261 (895)
T KOG2076|consen  200 AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM  261 (895)
T ss_pred             HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH
Confidence            99999999999999999999999999999999999999999888888888888777776663

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=6.3e-09  Score=92.24  Aligned_cols=93  Identities=22%  Similarity=0.241  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .-+-+-|.-.++-++|++|+..|.+||.++|.++-.|.+||.+|.++|+|+.|++++++|+.+||+...++..|+.+...
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            33455667778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 018089          345 IHERREQEKKQYRK  358 (361)
Q Consensus       345 ~~~~~~~~k~~~~~  358 (361)
                      +.+.+++... |+|
T Consensus       162 ~gk~~~A~~a-ykK  174 (304)
T KOG0553|consen  162 LGKYEEAIEA-YKK  174 (304)
T ss_pred             cCcHHHHHHH-HHh
Confidence            9888887666 665

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.94  E-value=5.6e-09  Score=74.89  Aligned_cols=70  Identities=24%  Similarity=0.319  Sum_probs=65.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  340 (361)
                      ..+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++++|.++|+++++++|++..+......
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5678999999999999999999999999999999999999999999999999999999998887666544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=4.3e-09  Score=97.59  Aligned_cols=123  Identities=23%  Similarity=0.197  Sum_probs=112.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+.++-+.||..|..|+|++|.+.|++||+                  -+.....+++|+|..+-.+|+.++|+.++-+.
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------ndasc~ealfniglt~e~~~~ldeald~f~kl  550 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALN------------------NDASCTEALFNIGLTAEALGNLDEALDCFLKL  550 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHc------------------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence            356678899999999999999999999998                  67778899999999999999999999999988


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      -.+--+++.+++.++.+|..+.+..+|+++|-++..+-|+++.++..|+.+...-.+.-++
T Consensus       551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence            8877789999999999999999999999999999999999999999999998776654443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.93  E-value=1.3e-08  Score=103.19  Aligned_cols=124  Identities=7%  Similarity=-0.005  Sum_probs=107.3

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai  284 (361)
                      .+..++.+.++...+..+.+.+++++|+..++++++                  ..|.+...++++|.++.++|++++|+
T Consensus       113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------------------~~p~~~~~~~~~a~~l~~~g~~~~A~  174 (694)
T PRK15179        113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS------------------GGSSSAREILLEAKSWDEIGQSEQAD  174 (694)
T ss_pred             HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHhcchHHHH
Confidence            333445677888999999999999999999999999                  88999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKIH  346 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~  346 (361)
                      ..|++++..+|++.+++..+|.++..+|+.++|...|++|+.+...-. .....+.++.....
T Consensus       175 ~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  237 (694)
T PRK15179        175 ACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA  237 (694)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999875433 33444455444433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.92  E-value=1e-08  Score=111.12  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=100.4

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      ...|..+.+.|++++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..|+++++++|
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQ------------------VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4568888999999999999999999                  7777788899999999999999999999999999999


Q ss_pred             CchhHHHHHHHH------------------------------------------HHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          296 DNVKALFRQGQA------------------------------------------YMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       296 ~~~ka~~~~g~~------------------------------------------~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      ++..++..++.+                                          +...|++++|++.|+++++++|+++.
T Consensus       417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~  496 (1157)
T PRK11447        417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW  496 (1157)
T ss_pred             CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            887776555443                                          44678999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 018089          334 IKKELAVAKKKIHERREQE  352 (361)
Q Consensus       334 ~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++..++.+....++.+++.
T Consensus       497 ~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        497 LTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHH
Confidence            8888888887777666653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.92  E-value=1.3e-08  Score=106.61  Aligned_cols=123  Identities=20%  Similarity=0.243  Sum_probs=107.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...|..++..|+|++|+..|+++++                  .+|....++..+|.+++..|++++|+..++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  185 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALA------------------IDPRSLYAKLGLAQLALAENRFDEARALIDEV  185 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            466788899999999999999999999998                  56666778899999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +..+|.+..+++.+|.++...|++++|+..|+++++++|.+..++..+..+....++..++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A  246 (899)
T TIGR02917       186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA  246 (899)
T ss_pred             HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999988888887777665555444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.91  E-value=2.5e-08  Score=95.24  Aligned_cols=116  Identities=18%  Similarity=0.131  Sum_probs=73.6

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +..+|..+++.|++++|+..|+++++                  ..|....+++.+|.++.++|++++|+..+++++..+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALA------------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHh------------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            44566666677777777777777766                  444455566667777777777777777777777666


Q ss_pred             CCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          295 DDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       295 p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      |.+ ..++..++.+|..+|++++|+..++++++.+|+.... ..++.+....++.+
T Consensus       245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~  299 (389)
T PRK11788        245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE  299 (389)
T ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence            655 3455666667777777777777777777776655433 44555444444333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.91  E-value=1.1e-08  Score=87.48  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=110.0

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      .+...-+.+.|..++.+|+|++|...|++|+...                .-+.-...|.|++.|.+++|+++.|..+++
T Consensus       100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~  163 (250)
T COG3063         100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP----------------AYGEPSDTLENLGLCALKAGQFDQAEEYLK  163 (250)
T ss_pred             CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----------------CCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence            3456677888999999999999999999998722                234456789999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++|+++|++..+...++..++..|+|..|..++++...--+..++.+.+.-++.+.+++...+.
T Consensus       164 raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~  227 (250)
T COG3063         164 RALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ  227 (250)
T ss_pred             HHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999999999999999999999999888888888888888888777655543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.5e-08  Score=93.07  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=117.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+.+++-.|..++-..+-+.|+.+|+++|++-+..      .........+.....+.+.|.-.++.|+|.+|-+.|.+|
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh------~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH------QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhh------hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            46778889999999999999999999999955432      122223456677788999999999999999999999999


Q ss_pred             hhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |.++|++    ++.|+++|.++..+|+.++|+.+++.|++|+|..-.++...+.|...+++++++-.
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~  342 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE  342 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999986    78899999999999999999999999999999888888888888888888777643

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=2.2e-08  Score=94.10  Aligned_cols=130  Identities=15%  Similarity=0.083  Sum_probs=115.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .....+-.+...+..|+++.|...++..+.                  ..|.++..+..++.++++.++..+|++.++++
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~------------------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka  366 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA------------------AQPDNPYYLELAGDILLEANKAKEAIERLKKA  366 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            344566677788888889999988888887                  77888899999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK  358 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  358 (361)
                      +.++|+..-..+++|++|...|++.+|+..+++.+.-+|+|+..|..|+++...+++..++.......
T Consensus       367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988777765544433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.90  E-value=2e-08  Score=95.91  Aligned_cols=87  Identities=21%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKK  343 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~  343 (361)
                      ..+.++|.++.+++++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++.+|.+ ..++..+..+..
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~  260 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ  260 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence            3566777788888888888888888888888888888888888888888888888888888877765 345566666666


Q ss_pred             HHHHHHHH
Q 018089          344 KIHERREQ  351 (361)
Q Consensus       344 ~~~~~~~~  351 (361)
                      ..++.+++
T Consensus       261 ~~g~~~~A  268 (389)
T PRK11788        261 ALGDEAEG  268 (389)
T ss_pred             HcCCHHHH
Confidence            55555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.89  E-value=1.4e-08  Score=110.11  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=72.4

Q ss_pred             HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~  296 (361)
                      ..|..++..|++++|+..|+++++                  .+|.+..++..+|.+++++|++++|+..++++++++|+
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~  335 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVR------------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH  335 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            458888888999999999999988                  55666666777777777777777777777777766665


Q ss_pred             chhH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          297 NVKA--------------LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       297 ~~ka--------------~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +...              ...+|.++...|++++|+..|+++++++|++..++..++.+....++.++
T Consensus       336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~e  403 (1157)
T PRK11447        336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAA  403 (1157)
T ss_pred             ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            4321              12234445555555555555555555555555555555555444444333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.89  E-value=4.2e-09  Score=74.41  Aligned_cols=67  Identities=31%  Similarity=0.370  Sum_probs=62.2

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      ++.|+|++|+..+++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999998888877654

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.89  E-value=3.5e-09  Score=74.15  Aligned_cols=64  Identities=20%  Similarity=0.259  Sum_probs=59.1

Q ss_pred             HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~  296 (361)
                      .+|..++..|+|++|++.|+++++                  ..|.+..++..+|.|+..+|++++|+..+++++.++|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK------------------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC------------------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            578999999999999999999999                  77889999999999999999999999999999999998


Q ss_pred             ch
Q 018089          297 NV  298 (361)
Q Consensus       297 ~~  298 (361)
                      ++
T Consensus        64 ~p   65 (65)
T PF13432_consen   64 NP   65 (65)
T ss_dssp             -H
T ss_pred             CC
Confidence            74

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.87  E-value=1.1e-07  Score=84.84  Aligned_cols=130  Identities=19%  Similarity=0.196  Sum_probs=105.1

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+...|..++.+|+|++|++.|++.+...|               ..+....+.+++|.+|+++++|++|+..+++.+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---------------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi   96 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI   96 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            55678899999999999999999999998443               234555667999999999999999999999999


Q ss_pred             hcCCCc---hhHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHH
Q 018089          292 RDGDDN---VKALFRQGQAYMALN---------------D---VDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~~~p~~---~ka~~~~g~~~~~~~---------------~---~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~  347 (361)
                      +++|++   ..++|.+|.++..++               +   -.+|+..|++.++.-|+.+   ++...+..++.++.+
T Consensus        97 ~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~  176 (243)
T PRK10866         97 RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK  176 (243)
T ss_pred             HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence            999987   568999999876554               1   2478899999999999864   567777777777776


Q ss_pred             HHHHHHHHH
Q 018089          348 RREQEKKQY  356 (361)
Q Consensus       348 ~~~~~k~~~  356 (361)
                      .+-.-.+.|
T Consensus       177 ~e~~ia~~Y  185 (243)
T PRK10866        177 YELSVAEYY  185 (243)
T ss_pred             HHHHHHHHH
Confidence            665544443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.3e-08  Score=89.09  Aligned_cols=123  Identities=19%  Similarity=0.134  Sum_probs=108.0

Q ss_pred             chhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CH
Q 018089          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DL  280 (361)
Q Consensus       204 ~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~  280 (361)
                      .+...++.++.|.-+|..+...+++..|...|.+|++                  +.|.++..+..+|.+++.+.   .-
T Consensus       148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r------------------L~g~n~~~~~g~aeaL~~~a~~~~t  209 (287)
T COG4235         148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR------------------LAGDNPEILLGLAEALYYQAGQQMT  209 (287)
T ss_pred             HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCccc
Confidence            3445566788999999999999999999999999999                  88888999999999887763   57


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .++...+++++.+||+++.+.+.+|..+++.|+|.+|+..++..+.+.|.+..-...+......
T Consensus       210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999887666655554433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.85  E-value=4.2e-08  Score=78.62  Aligned_cols=110  Identities=16%  Similarity=0.194  Sum_probs=96.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+...|...++.|+|.+|++.++....-.+               ..+....+.+.++-+|++.++|++|+..+++-|
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi   74 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI   74 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            46688899999999999999999999877443               455667789999999999999999999999999


Q ss_pred             hcCCCch---hHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhhCCCCHHHHH
Q 018089          292 RDGDDNV---KALFRQGQAYMALND---------------VDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       292 ~~~p~~~---ka~~~~g~~~~~~~~---------------~~~A~~~~~~a~~l~p~~~~~~~  336 (361)
                      +++|.+.   -|+|.+|.+++.+..               ..+|..+|++.++.-|+...+..
T Consensus        75 rLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   75 RLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9999885   589999999999887               88999999999999998876543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.82  E-value=2.8e-08  Score=84.10  Aligned_cols=129  Identities=14%  Similarity=0.077  Sum_probs=113.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .|.-+.+.|+.+-.-|-+..|.--+.+++.                  +.|..+.+++.+|.-+...|+|+.|.+.++..
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa------------------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~  125 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV  125 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhh------------------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence            688899999999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG--GIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~--~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      +++||.+--++.++|.+++.-|+|+-|.+++.+..+-||+|+  ..|..+.+.+..-++....-.++|.
T Consensus       126 ~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~  194 (297)
T COG4785         126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE  194 (297)
T ss_pred             hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999997  5666666655554444444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.80  E-value=1.1e-07  Score=70.00  Aligned_cols=87  Identities=31%  Similarity=0.382  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      +++++|.++...|++++|+..+++++...|.+..+++.+|.++...+++++|+..|++++.+.|.+..++..++.+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999998999999888888


Q ss_pred             HHHHHHH
Q 018089          346 HERREQE  352 (361)
Q Consensus       346 ~~~~~~~  352 (361)
                      ++.....
T Consensus        82 ~~~~~a~   88 (100)
T cd00189          82 GKYEEAL   88 (100)
T ss_pred             HhHHHHH
Confidence            7766654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.80  E-value=1.4e-07  Score=82.00  Aligned_cols=130  Identities=21%  Similarity=0.219  Sum_probs=101.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..++..|..++..|+|.+|+..|++.+...+               ..+....+.+.+|.++++.++|..|+..+++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f   68 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP---------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF   68 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467789999999999999999999999998554               34566778999999999999999999999999


Q ss_pred             hhcCCCch---hHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNV---KALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~---ka~~~~g~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +...|++.   .++|.+|.+++.+.           ...+|+..|+..++.-|+.+   .+...+..+...+.+.+-.--
T Consensus        69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia  148 (203)
T PF13525_consen   69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA  148 (203)
T ss_dssp             HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999874   69999999987653           24589999999999999875   556666777777666555433


Q ss_pred             HH
Q 018089          354 KQ  355 (361)
Q Consensus       354 ~~  355 (361)
                      +.
T Consensus       149 ~~  150 (203)
T PF13525_consen  149 RF  150 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.79  E-value=6.1e-08  Score=100.74  Aligned_cols=108  Identities=12%  Similarity=0.032  Sum_probs=100.4

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..+|..+...|++++|++.+++++.                  ..|.+..++.++|.++..+|++++|+..+++++.
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~  421 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAY------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV  421 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            4456788899999999999999999999                  7788889999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      ++|++..+++.+|.++..++++++|...++++++..|+++.+...-
T Consensus       422 l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~  467 (765)
T PRK10049        422 LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA  467 (765)
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999765443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.79  E-value=7.8e-08  Score=79.52  Aligned_cols=104  Identities=26%  Similarity=0.290  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHhhcCCC
Q 018089          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG----------DLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~----------~~~~Ai~~~~~al~~~p~  296 (361)
                      -|+.|.+.|+....                  .+|.+...++|=|.+++.+.          .+++|+.-+++||.++|+
T Consensus         6 ~FE~ark~aea~y~------------------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~   67 (186)
T PF06552_consen    6 FFEHARKKAEAAYA------------------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN   67 (186)
T ss_dssp             HHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHH------------------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc
Confidence            36788888988887                  89999999999998888763          367899999999999999


Q ss_pred             chhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          297 NVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       297 ~~ka~~~~g~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      ...|++.+|.+|..++.           |++|..+|++|..++|+|...+..|....+.-+-.
T Consensus        68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh  130 (186)
T PF06552_consen   68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELH  130 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHH
Confidence            99999999999998764           78999999999999999999999998876554433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.79  E-value=1.6e-08  Score=95.26  Aligned_cols=70  Identities=16%  Similarity=0.118  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA---LFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       258 ~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka---~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      ..+|.+...|+|+|.+|+++|+|++|+..|++||+++|++..+   ||++|.+|..+|++++|+++|++|+++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4788999999999999999999999999999999999999865   999999999999999999999999998

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=3.6e-08  Score=94.13  Aligned_cols=154  Identities=14%  Similarity=0.145  Sum_probs=125.2

Q ss_pred             chhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc--------------------------c--------ccC
Q 018089          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC--------------------------W--------EKE  249 (361)
Q Consensus       204 ~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~--------------------------~--------~~~  249 (361)
                      ...+.++.+++|..+|......++=..|+..+++|+++=+.-                          |        ...
T Consensus       311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~  390 (579)
T KOG1125|consen  311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV  390 (579)
T ss_pred             HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence            344556679999999999999999999999999998865400                          0        000


Q ss_pred             ----CCCcc---------ch----------hhHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089          250 ----GIDEG---------KS----------SSLRK--TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       250 ----~~~~~---------~~----------~~~~~--~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~  304 (361)
                          ....+         ..          ....+  .++.+..-||.+|.-.++|++|+.+++.||..+|++...|.|+
T Consensus       391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL  470 (579)
T KOG1125|consen  391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL  470 (579)
T ss_pred             ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence                00000         00          11233  5677889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089          305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       305 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      |-.+..-.+.++|+..|.+|++|-|+...++.+|+...-.++.++++.+....
T Consensus       471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988766543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.76  E-value=1.4e-07  Score=79.46  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=91.9

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      ..+.+|-.++|..+...+.+.++.                ........+++++|.++..++++++|+..+++++.+.|+.
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~   68 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPT----------------TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP   68 (168)
T ss_pred             cccccccccccccchhhhhHhccC----------------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence            345566666677777777555431                1344567889999999999999999999999999987653


Q ss_pred             ---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          298 ---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       298 ---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                         +.+++++|.++..+|++++|+..|+++++++|.+...+..++.+...+.
T Consensus        69 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         69 YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence               4599999999999999999999999999999999988888888877433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.74  E-value=3.4e-08  Score=96.53  Aligned_cols=123  Identities=15%  Similarity=0.160  Sum_probs=111.2

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+.+.+..|+..+++++|.+|.++++.+++                  ++|.....|+++|.|++++++++.|..+|..+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLE------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhh------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            355667788888899999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.++|++..+|.+++.+|..+++-.+|-..+.+|++.+-++..+|.+...+.-...+.+.+
T Consensus       546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence            9999999999999999999999999999999999999988888888877777766665554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.72  E-value=1.1e-07  Score=89.81  Aligned_cols=87  Identities=18%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      +...|..++..++|++|+..|++||+++|++..+|+.+|.+|..+|++++|+.+++++++++|.+..++..++.+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45668888999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHH
Q 018089          347 ERREQEK  353 (361)
Q Consensus       347 ~~~~~~k  353 (361)
                      ++.++..
T Consensus        85 ~~~eA~~   91 (356)
T PLN03088         85 EYQTAKA   91 (356)
T ss_pred             CHHHHHH
Confidence            8777644

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.72  E-value=3.4e-08  Score=71.80  Aligned_cols=67  Identities=30%  Similarity=0.419  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GD---DNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~----~p---~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      |....++.|+|.+|..+|+|++|+.++++++.+    .+   .-+.+++++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            567789999999999999999999999999965    22   23789999999999999999999999999986

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.72  E-value=1.5e-07  Score=97.19  Aligned_cols=109  Identities=13%  Similarity=0.017  Sum_probs=57.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +...+..+...+++|+|+.|+..|+++++.                  +|........++.++..+|++++|+.+|++++
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~------------------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~   95 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA------------------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ   95 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence            456788899999999999999999999983                  33332111144444444444444444444444


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .-.|.+..++..+|.++..+|+|++|++.|+++++++|+++.++..+
T Consensus        96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL  142 (822)
T PRK14574         96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM  142 (822)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            11112222222223344444444444444444444444444444433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.71  E-value=3.6e-08  Score=69.56  Aligned_cols=67  Identities=24%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHH
Q 018089          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~  301 (361)
                      +++.|+|++|++.|++++.                  .+|.+..++..+|.||+++|++++|...+++++..+|+++..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            4678999999999999999                  8899999999999999999999999999999999999987777


Q ss_pred             HHHHH
Q 018089          302 FRQGQ  306 (361)
Q Consensus       302 ~~~g~  306 (361)
                      .-++.
T Consensus        63 ~l~a~   67 (68)
T PF14559_consen   63 QLLAQ   67 (68)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66664

...

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.71  E-value=6.9e-08  Score=94.93  Aligned_cols=103  Identities=24%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL--DTEF  289 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~--~~~~  289 (361)
                      +..++..|..+..+|++.+|.+.|..|+.                  ++|..+.+...+|.|+++.|+-.-|..  ....
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~------------------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d  745 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA------------------LDPDHVPSMTALAELLLELGSPRLAEKRSLLSD  745 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence            44555666666666666777777766666                  666666666666777766666555555  6666


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      |+++||.+.++||.+|.++..+|+.++|.++|.-|++|++.+|
T Consensus       746 alr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  746 ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            6677777777777777777777777777777776666666654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=1.8e-08  Score=90.01  Aligned_cols=141  Identities=17%  Similarity=0.182  Sum_probs=104.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC---------CCCccch-------hhHHHHHHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---------GIDEGKS-------SSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---------~~~~~~~-------~~~~~~~~~~~~nla~~~  274 (361)
                      .+.-+..++.++-..+++++|+++|+.++++-+....-.         ....|..       ..+.-.++.+++|+|.|+
T Consensus       289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC  368 (478)
T KOG1129|consen  289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC  368 (478)
T ss_pred             hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence            455555566666666666666666666665332110000         0000000       114556778999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          275 LKLGDLKGALLDTEFAMRDGD--D-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       275 ~~l~~~~~Ai~~~~~al~~~p--~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +..++++-++..+++|+....  + -+..||++|.+....|++..|.++|+-|+.-||++.+++.+|+.++.+..+...+
T Consensus       369 ~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  369 LYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             HhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            999999999999999997643  2 3789999999999999999999999999999999999999999998887765554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.70  E-value=1.9e-07  Score=81.39  Aligned_cols=123  Identities=18%  Similarity=0.204  Sum_probs=101.2

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      ....+.++-.|+=+.++....+++.                  ..+.+..+..-.+...+..|+|.+|+..+.+|.+++|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~------------------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p  131 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI------------------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP  131 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc------------------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence            3455555556666666666565544                  4555666666688999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY  356 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~  356 (361)
                      +++++|.-+|.+|.++|++++|...|.+++++.|+++.+..+++-..-...+.+.+++..-
T Consensus       132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll  192 (257)
T COG5010         132 TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL  192 (257)
T ss_pred             CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998877777776665443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=3.1e-07  Score=86.42  Aligned_cols=112  Identities=18%  Similarity=0.127  Sum_probs=97.8

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      -..|..+++.++.++|++.+++++.                  +.|....+..|+|.++++.|++.+|+...+..+.-+|
T Consensus       344 ~~~~~i~~~~nk~~~A~e~~~kal~------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         344 ELAGDILLEANKAKEAIERLKKALA------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHh------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            3457778899999999999999999                  8888899999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      +++..|..+|++|..+|+-.+|...+...+.+...-..+...+..+++..
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999998888888888888887776666666666555554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.68  E-value=2.3e-07  Score=78.47  Aligned_cols=89  Identities=22%  Similarity=0.310  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      .++....+++++|.++...|++++|+.+|++++.+.|+.   ..+++.+|.++..+|++++|+..|+++++++|.+...+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            456777889999999999999999999999999887653   57999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHH
Q 018089          336 KELAVAKKKIHE  347 (361)
Q Consensus       336 ~~l~~~~~~~~~  347 (361)
                      ..++.+...+.+
T Consensus       110 ~~lg~~~~~~g~  121 (172)
T PRK02603        110 NNIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHHHcCC
Confidence            888887766544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=1e-07  Score=90.10  Aligned_cols=124  Identities=21%  Similarity=0.169  Sum_probs=107.7

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc---CCHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---GDLK  281 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~  281 (361)
                      .-+.++.++.++..||..|..+.+..|+..|.+++.                  ..|....+|.|+|.++++.   ++--
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q------------------~~~~~~~~l~nraa~lmkRkW~~d~~  428 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ------------------YVPDAIYLLENRAAALMKRKWRGDSY  428 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh------------------hccchhHHHHhHHHHHHhhhccccHH
Confidence            456777899999999999999999999999999998                  7778889999999999986   5788


Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      .|+.+|..|++++|...||+|+++.++..++++.+|+.+...+....|.+.........+.+.+.
T Consensus       429 ~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~  493 (758)
T KOG1310|consen  429 LALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDIS  493 (758)
T ss_pred             HHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchH
Confidence            89999999999999999999999999999999999999998888888866655444444444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.66  E-value=7.5e-08  Score=68.94  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=64.4

Q ss_pred             ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 018089          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (361)
Q Consensus       219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~  298 (361)
                      ...+++.++|++|++++++++.                  ++|.++.++..+|.|+.++|++.+|+.+++++++..|++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE------------------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH------------------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            4578899999999999999999                  8999999999999999999999999999999999999998


Q ss_pred             hHHHHHHH
Q 018089          299 KALFRQGQ  306 (361)
Q Consensus       299 ka~~~~g~  306 (361)
                      .+..-++.
T Consensus        64 ~~~~~~a~   71 (73)
T PF13371_consen   64 DARALRAM   71 (73)
T ss_pred             HHHHHHHh
Confidence            87766553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.66  E-value=2.6e-07  Score=75.80  Aligned_cols=96  Identities=23%  Similarity=0.197  Sum_probs=52.9

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      .....+|..++..|+|++|+..|++++...+               .......+.+++|.+++.+|+|++|+..++. +.
T Consensus        49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~---------------d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~  112 (145)
T PF09976_consen   49 LAALQLAKAAYEQGDYDEAKAALEKALANAP---------------DPELKPLARLRLARILLQQGQYDEALATLQQ-IP  112 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-cc
Confidence            3445556666666666666666666655110               1223344555666666666666666666644 22


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      -.+..+.++..+|.+|...|++++|+..|++|
T Consensus       113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            33334455556666666666666666666655

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.65  E-value=1.7e-07  Score=68.12  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=62.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+.+|++++++....           ....+..+.++.|+|.|+..+|++++|++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-----------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            467788999999999999999999999999964322           113556789999999999999999999999999


Q ss_pred             Hhhc
Q 018089          290 AMRD  293 (361)
Q Consensus       290 al~~  293 (361)
                      ++++
T Consensus        72 al~i   75 (78)
T PF13424_consen   72 ALDI   75 (78)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9975

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.65  E-value=1e-07  Score=95.86  Aligned_cols=115  Identities=19%  Similarity=0.241  Sum_probs=98.5

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--C
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG--D  295 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~--p  295 (361)
                      +|-++-.+|+|..|+..|.+..+                  ........|.|+|.||+.+|+|..|++.|+.+++..  .
T Consensus       652 IgiVLA~kg~~~~A~dIFsqVrE------------------a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~  713 (1018)
T KOG2002|consen  652 IGIVLAEKGRFSEARDIFSQVRE------------------ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK  713 (1018)
T ss_pred             hhhhhhhccCchHHHHHHHHHHH------------------HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            46667777778888877777766                  344566889999999999999999999999999743  4


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +++..+..+|.+++..|.+.+|.+++.+|+.+.|.|..+..+++.+..++.+.-.
T Consensus       714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l  768 (1018)
T KOG2002|consen  714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL  768 (1018)
T ss_pred             CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999998887765444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.64  E-value=4.2e-07  Score=71.20  Aligned_cols=88  Identities=17%  Similarity=0.272  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKEL  338 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l  338 (361)
                      ..++.+|..++++|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   ..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            467999999999999999999999999999876   5799999999999999999999999999999986   5678888


Q ss_pred             HHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+...+++..+..
T Consensus        83 ~~~~~~~~~~~~A~   96 (119)
T TIGR02795        83 GMSLQELGDKEKAK   96 (119)
T ss_pred             HHHHHHhCChHHHH
Confidence            88877766655543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.64  E-value=1.4e-07  Score=86.10  Aligned_cols=124  Identities=21%  Similarity=0.170  Sum_probs=97.1

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+......+...++++++.+.++++....                ..+.+..+|..+|.++.+.|++++|+.++++|++
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~  174 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELP----------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALE  174 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T-------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhcc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334455667788899999999999976511                2346778899999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++|++..++..++.++...|+++++.+.++...+..|.++..+..++.+...+++.+++.
T Consensus       175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al  234 (280)
T PF13429_consen  175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL  234 (280)
T ss_dssp             H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence            999999999999999999999999999999999998999999999999999888877663

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.63  E-value=6.7e-07  Score=70.39  Aligned_cols=99  Identities=20%  Similarity=0.110  Sum_probs=85.9

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+++.|..+-..|+.++|+..|++++..-.               ..+....++.++|.++..+|++++|+..+++++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL---------------~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGL---------------SGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567889999999999999999999998210               2345567899999999999999999999999999


Q ss_pred             cCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          293 DGDD---NVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       293 ~~p~---~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      ..|+   +.....-++.++..+|++++|+..+-.++.
T Consensus        67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8887   778888899999999999999999987764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.62  E-value=5.6e-07  Score=90.67  Aligned_cols=122  Identities=23%  Similarity=0.279  Sum_probs=110.4

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+++.+|-+|+|..+...+.-++....               ..+..+..++.+|.+|..+|+|++|-.+|.+
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~  332 (1018)
T KOG2002|consen  268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYME  332 (1018)
T ss_pred             CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3466677889999999999999999999988331               4556777899999999999999999999999


Q ss_pred             HhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       290 al~~~p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      ++..+|++ .-+++.+|+.|...|+++.|+.+|++.++..|++.+....|+.+.....
T Consensus       333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            99999998 8999999999999999999999999999999999999999999888774

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.57  E-value=3.6e-07  Score=86.25  Aligned_cols=68  Identities=22%  Similarity=0.260  Sum_probs=62.1

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHH---HHHHHHHHHHhcCCHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ---IFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~l~~~~~Ai~  285 (361)
                      +..+..+.++|..+++.|+|++|+..|++||+                  ++|.+..   +|+|+|.||.++|++++|+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla  133 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE------------------LNPNPDEAQAAYYNKACCHAYREEGKKAAD  133 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34578899999999999999999999999999                  7777764   59999999999999999999


Q ss_pred             HHHHHhhcC
Q 018089          286 DTEFAMRDG  294 (361)
Q Consensus       286 ~~~~al~~~  294 (361)
                      ++++||++.
T Consensus       134 ~LrrALels  142 (453)
T PLN03098        134 CLRTALRDY  142 (453)
T ss_pred             HHHHHHHhc
Confidence            999999983

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.56  E-value=9.2e-07  Score=86.04  Aligned_cols=132  Identities=18%  Similarity=0.167  Sum_probs=108.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..++..|..|...++|.+|+..|++|+.+.....          -..+|..+..+.|||..|.+.|+|++|..+|++|
T Consensus       240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~----------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF----------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            345556789999999999999999999999664321          1257788899999999999999999999999999


Q ss_pred             hhcC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PND---GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~--------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~-----p~~---~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +++-        |.-...+..++.++..++++++|+.+|++++++-     +.|   +.+..+|+.+....++.++++
T Consensus       310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~  387 (508)
T KOG1840|consen  310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE  387 (508)
T ss_pred             HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence            9653        3346788889999999999999999999998873     223   567888888888888877764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.53  E-value=1.1e-06  Score=77.55  Aligned_cols=112  Identities=16%  Similarity=0.182  Sum_probs=98.6

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      +..++.+..+++.|+|..|...|..-+.--|               -.+....+++-||.+++.+|+|++|...|..+++
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---------------~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k  206 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYP---------------NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK  206 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            4488999999999999999999999998433               3456678899999999999999999999999999


Q ss_pred             cCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          293 DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       293 ~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      -.|++   +++++.+|.+...+|+-++|...|+++++--|....+...-.
T Consensus       207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            98877   567999999999999999999999999999999876654433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=2.3e-06  Score=74.36  Aligned_cols=138  Identities=14%  Similarity=0.045  Sum_probs=92.7

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc--------------cccCCCCccc--hhhHHHHHHHHHHHHHHHHHhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDIC--------------WEKEGIDEGK--SSSLRKTKSQIFTNSSACKLKL  277 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~--------------~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~l  277 (361)
                      -.+-.|+.+-..|+|++|+++|+..|+--|+-              .......++.  ....-+.+..+|.-+|..|+.+
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence            34556888899999999999999888711100              0000000000  0122345667788888888888


Q ss_pred             CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       278 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ++|++|.=++++.+-+.|.++-.+.|+|.+++.+|   +++-|..+|.++++++|.+...+..+-.+-..+.+.-+.
T Consensus       168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~  244 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKA  244 (289)
T ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence            88888888888888888888888888888877766   566777888888888887766666666666666544443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.48  E-value=1.4e-06  Score=89.61  Aligned_cols=119  Identities=17%  Similarity=0.129  Sum_probs=101.8

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ..++..+...+...+++++|+...+.+++                  ..|....+|+.+|.++++.+++.++...  .++
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l   90 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLK------------------EHKKSISALYISGILSLSRRPLNDSNLL--NLI   90 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence            45667788888899999999999999998                  8888899999999999998887777665  555


Q ss_pred             hcCCCch-------------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNV-------------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       292 ~~~p~~~-------------------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .+-+.+.                   .|++.+|.||..+|++++|.+.|+++++++|+|+.+..+++-..... +.+++
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence            5555444                   89999999999999999999999999999999999999999887777 44444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.48  E-value=4.1e-06  Score=75.21  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=102.6

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      ++..+-++|...++|++|++.-++...+-+.             ...-..+..|+-+|..++...+.+.|+....+|+..
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-------------~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa  209 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQ-------------TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA  209 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-------------cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence            3444566677777777777776666552211             144456678899999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      +|.++.|-.-+|.+....|+|+.|++.++++++-||+. +++...|.++...+.+..+.....
T Consensus       210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999975 578888888888877766654433

>TIGR00540 hemY_coli hemY protein

Probab=98.47  E-value=4.9e-06  Score=80.31  Aligned_cols=126  Identities=14%  Similarity=0.067  Sum_probs=105.8

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      .+.+......|...+..|+|+.|.+...++.+                  ..|.....+...|.++.++|+++.|..++.
T Consensus        81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~------------------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~  142 (409)
T TIGR00540        81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD------------------HAAEPVLNLIKAAEAAQQRGDEARANQHLE  142 (409)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34577778889999999999999999999887                  445555667778888999999999999999


Q ss_pred             HHhhcCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~~-ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++.+..|++. .+....+.++...|++++|.+.+++..+..|+++.+...+..+....++..+..
T Consensus       143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~  207 (409)
T TIGR00540       143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD  207 (409)
T ss_pred             HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            9999888775 455556899999999999999999999999999999999999888888776543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.47  E-value=4.6e-06  Score=68.31  Aligned_cols=132  Identities=12%  Similarity=0.053  Sum_probs=103.4

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      .+.+...+......+..+++..+...+++.+.-.+               ..+....+.+.+|.+++..|++++|+..++
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~   72 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALE   72 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34566667777777788999998888888877211               233456788999999999999999999999


Q ss_pred             HHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089          289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       289 ~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      .++...|+.   ..+.+++|.++...|++++|+..++. ..-.+-.+.+...++.+....++..++ ++.|+
T Consensus        73 ~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A-~~~y~  142 (145)
T PF09976_consen   73 KALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA-RAAYQ  142 (145)
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH-HHHHH
Confidence            999987665   56899999999999999999999966 333445667888888888887777666 34443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.46  E-value=2.8e-06  Score=82.75  Aligned_cols=131  Identities=15%  Similarity=0.103  Sum_probs=99.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .......+|..++.+|+|+.|+..+++|++.+...+-          -..+.......++|.+|+.+++|.+|+..|++|
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G----------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A  267 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG----------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEA  267 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC----------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3455566999999999999999999999996432211          024555666678999999999999999999999


Q ss_pred             hhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHH---HHHHHHHHHHHH
Q 018089          291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PNDGGIKKELA---VAKKKIHERREQ  351 (361)
Q Consensus       291 l~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~-----p~~~~~~~~l~---~~~~~~~~~~~~  351 (361)
                      +.+        +|.-+-++.++|.+|...|+|++|..++++|+++-     ...+.+...+.   .+...+.+.+++
T Consensus       268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence            954        55568899999999999999999999999999874     23444444444   344444444444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.43  E-value=2e-06  Score=88.93  Aligned_cols=118  Identities=10%  Similarity=0.061  Sum_probs=98.0

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ...+...|..+...|+|++|++.|+++++                  .+|.+..++..++.++..+++.++|++.+++++
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~------------------~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~  163 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLK------------------KDPTNPDLISGMIMTQADAGRGGVVLKQATELA  163 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence            34455568888899999999999999999                  888888888899999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      ..+|.+... ..++.++..++++.+|++.|+++++++|++..+...+..+...+.-.
T Consensus       164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~  219 (822)
T PRK14574        164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV  219 (822)
T ss_pred             ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence            999985544 44455565677887799999999999999999888877766665533

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.43  E-value=4.3e-07  Score=67.02  Aligned_cols=78  Identities=26%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             cCCHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          277 LGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       277 l~~~~~Ai~~~~~al~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      +++|+.|+..+++++..+|.  +...++.+|.||+.+|+|++|+..+++ .+.+|.+......++.+.-.+++.+++.+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  577888899999999999999999999 889999989999999999999998887654


Q ss_pred             H
Q 018089          355 Q  355 (361)
Q Consensus       355 ~  355 (361)
                      .
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            3

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.42  E-value=8.9e-06  Score=78.19  Aligned_cols=126  Identities=13%  Similarity=0.059  Sum_probs=99.6

Q ss_pred             HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHH-HHHHHHHHHhcCCHHHHHHH
Q 018089          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI-FTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nla~~~~~l~~~~~Ai~~  286 (361)
                      +.+.+......|...+..|+|+.|.+...++-+                  ..+ .+.+ +...+....++|+++.|..+
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~------------------~~~-~p~l~~llaA~aA~~~g~~~~A~~~  140 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNAD------------------HAE-QPVVNYLLAAEAAQQRGDEARANQH  140 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------ccc-chHHHHHHHHHHHHHCCCHHHHHHH
Confidence            344677778899999999999999977776544                  111 1233 44445556899999999999


Q ss_pred             HHHHhhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       287 ~~~al~~~p~~~k-a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.++.+.+|++.- .....+..+...|++++|++.++++.+.+|+++.+...+..+....++..+..
T Consensus       141 l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        141 LERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999998754 34455899999999999999999999999999999999999888887776654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.40  E-value=4.3e-06  Score=83.84  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=96.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      ....++.+|.++-.+|+..+|+.....|..                  ++|.+...|..++....++|++.+|+-+|.+|
T Consensus       172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rA  233 (895)
T KOG2076|consen  172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRA  233 (895)
T ss_pred             chhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            466788899999999999999999999988                  88888899999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      |..+|.+.+.+++++..|..+|++..|.+.|.+++.++|
T Consensus       234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=1.2e-05  Score=69.97  Aligned_cols=88  Identities=19%  Similarity=0.160  Sum_probs=77.6

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALL  285 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Ai~  285 (361)
                      +...++|.+++..|+..++|++|.-+|++.+=                  .+|..+.++..+|.+++-+|   ++.-|..
T Consensus       151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll------------------~~P~n~l~f~rlae~~Yt~gg~eN~~~ark  212 (289)
T KOG3060|consen  151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL------------------IQPFNPLYFQRLAEVLYTQGGAENLELARK  212 (289)
T ss_pred             cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44688999999999999999999999999998                  88999999999999988876   6788999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHhcCCH
Q 018089          286 DTEFAMRDGDDNVKALFRQGQAYMALNDV  314 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~  314 (361)
                      +|.+++.++|.+..+++.+-.|-..+-+.
T Consensus       213 yy~~alkl~~~~~ral~GI~lc~~~la~~  241 (289)
T KOG3060|consen  213 YYERALKLNPKNLRALFGIYLCGSALAQI  241 (289)
T ss_pred             HHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887776654433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.40  E-value=3.1e-06  Score=83.59  Aligned_cols=121  Identities=14%  Similarity=0.078  Sum_probs=109.3

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..|...+..+.+.+.-++|..+..+|-.                  +.+.....|+.+|.++...|++.+|.+.|..|+.
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASK------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHh------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence            3445556666677778888889999987                  7889999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVE--SFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +||+++.+..-+|.++...|+..-|..  .+..+++++|.|.++|..|+.+.+..++.+++
T Consensus       713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence            999999999999999999998888888  99999999999999999999999999887754

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.38  E-value=3.9e-06  Score=81.44  Aligned_cols=120  Identities=15%  Similarity=0.190  Sum_probs=104.2

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .++...-..|..++|..-+..-++.|.                  ..|.......-.|.....+|+-++|...+..+++.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~------------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~   70 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILK------------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN   70 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH------------------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence            456667778888999999988888888                  66667777788888888999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      |+.+.-.|..+|.++..-++|++|+.+|+.|++++|+|..++.-|+.++..+++.+--
T Consensus        71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence            9999999999999999999999999999999999999999999999998888876543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.36  E-value=2.1e-06  Score=81.03  Aligned_cols=100  Identities=14%  Similarity=0.088  Sum_probs=88.7

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ...+...|..+...|++++|+..++++++                  ..|.+..++..+|.++..+|++++|+..+++++
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l  175 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALE------------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR  175 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence            34556778899999999999999999999                  777778899999999999999999999999999


Q ss_pred             hcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          292 RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       292 ~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      ...|..    ...+..+|.++..+|++++|+..|++++...|
T Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            988743    24567899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=98.34  E-value=4.7e-06  Score=78.97  Aligned_cols=108  Identities=13%  Similarity=0.059  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHH---HhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhcC
Q 018089          227 DYKMALRKYRKAL---RYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---------GDLKGALLDTEFAMRDG  294 (361)
Q Consensus       227 ~y~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---------~~~~~Ai~~~~~al~~~  294 (361)
                      ..+.|+..+.+|+   .                  ++|....+|.-+|.|++..         .+-.+|++..++|++++
T Consensus       273 ~~~~Al~lf~ra~~~~~------------------ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld  334 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSD------------------IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT  334 (458)
T ss_pred             HHHHHHHHHHHHhhccc------------------CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence            5678999999999   5                  8888899999999998875         23567889999999999


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |.++.|++.+|.++...++++.|...|++|+.++|+.+.++...+.+.-..++.+++.
T Consensus       335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~  392 (458)
T PRK11906        335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR  392 (458)
T ss_pred             CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999998888666555555443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=9.4e-06  Score=72.65  Aligned_cols=93  Identities=22%  Similarity=0.158  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      .+|.++.-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++...   .-.+|.+.|++++++||.|..+.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            899999999999999999999999999999999999999999999999877665   34689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018089          336 KELAVAKKKIHERREQ  351 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~~  351 (361)
                      ..|+...-..++++++
T Consensus       231 ~lLA~~afe~g~~~~A  246 (287)
T COG4235         231 SLLAFAAFEQGDYAEA  246 (287)
T ss_pred             HHHHHHHHHcccHHHH
Confidence            9999988877777665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.28  E-value=1.3e-05  Score=63.12  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKEL  338 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l  338 (361)
                      .+.+++|.++-.+|+.++|+..|+++++...+.   ..++..+|.++..+|++++|+..+++++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999975443   689999999999999999999999999999888   77777777


Q ss_pred             HHHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQEK  353 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k  353 (361)
                      +.+.....+.+++-.
T Consensus        82 Al~L~~~gr~~eAl~   96 (120)
T PF12688_consen   82 ALALYNLGRPKEALE   96 (120)
T ss_pred             HHHHHHCCCHHHHHH
Confidence            776666666655543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.27  E-value=1.2e-05  Score=79.30  Aligned_cols=121  Identities=13%  Similarity=0.098  Sum_probs=89.2

Q ss_pred             hHHHHHhccHHHHh---hhHHHHHHHHHHHHHhhhhcc--------------ccCCCCccchh----------h--HHHH
Q 018089          212 VDSIKVFGNEHYKK---QDYKMALRKYRKALRYLDICW--------------EKEGIDEGKSS----------S--LRKT  262 (361)
Q Consensus       212 a~~~~~~G~~~~~~---g~y~~A~~~y~~al~~~~~~~--------------~~~~~~~~~~~----------~--~~~~  262 (361)
                      |-.+.-.|..++..   +++..|+.++++|+++-|...              ...........          .  ..+.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            44556667777654   458899999999999765210              00111111100          0  1333


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      .+.+|.-+|..+...|++++|...+++|++++| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            446778888888889999999999999999999 5789999999999999999999999999999998874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.27  E-value=9.5e-06  Score=76.51  Aligned_cols=141  Identities=10%  Similarity=-0.081  Sum_probs=107.2

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc-------------cCCCCccc------hhhHHHHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-------------KEGIDEGK------SSSLRKTKSQIFTNSSA  272 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~nla~  272 (361)
                      .+.....|..++..|++++|++.++++++..|....             .......-      .....|.....+.++|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            344566788999999999999999999986542210             00000000      01233455567778999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHHHHH
Q 018089          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG----IKKELAVAKKKIHER  348 (361)
Q Consensus       273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~----~~~~l~~~~~~~~~~  348 (361)
                      ++..+|++++|+..++++++++|++..++..+|.+++..|++++|+..+++++.+.|.+..    .+..++.+....++.
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999999999999999999999999999999999999999885433    344677777777666


Q ss_pred             HHHH
Q 018089          349 REQE  352 (361)
Q Consensus       349 ~~~~  352 (361)
                      .++.
T Consensus       203 ~~A~  206 (355)
T cd05804         203 EAAL  206 (355)
T ss_pred             HHHH
Confidence            6554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.27  E-value=4.6e-06  Score=79.05  Aligned_cols=91  Identities=14%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      ++..+...++-.+|++...++|.                  ..|.+..++...|..+++.++++.|+..+++|+.+.|++
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~------------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~  267 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALK------------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE  267 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            44444455555566666666665                  444555666666666666666666666666666666666


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          298 VKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      .+.|+.++.+|..+|++++|+..+..+--
T Consensus       268 f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  268 FETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            66666666666666666666655554433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.26  E-value=1.4e-05  Score=65.62  Aligned_cols=95  Identities=11%  Similarity=-0.054  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      +.+......+..|--++..|++++|...++-....+|.+.+-|+.+|.|+..+++|++|+..|..|..++++|+......
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            56666777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQEK  353 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k  353 (361)
                      +.|.-.+++...+.+
T Consensus       112 gqC~l~l~~~~~A~~  126 (165)
T PRK15331        112 GQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHHHHHhCCHHHHHH
Confidence            998888887766643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.26  E-value=2.2e-05  Score=65.27  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=96.9

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .......+|+.+.+.|++.+|..+|++++.                 .+-..+..++..+|...+.++++..|...+++.
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qals-----------------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l  150 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALS-----------------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL  150 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----------------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            455677899999999999999999999987                 233456778899999999999999999999999


Q ss_pred             hhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          291 MRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       291 l~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .+.+|.  ++....-.|.++..+|.+++|...|+.++...|+ +.......+...+
T Consensus       151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~  205 (251)
T COG4700         151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK  205 (251)
T ss_pred             hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence            999985  4788888999999999999999999999999885 3344444443333

>TIGR00540 hemY_coli hemY protein

Probab=98.26  E-value=9.1e-06  Score=78.46  Aligned_cols=127  Identities=16%  Similarity=0.022  Sum_probs=99.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI--FTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ........|..+...|++++|++.++++++                  ..|.+...  ..-+....+..++...++..++
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------------------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK------------------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHh------------------hCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            456677789999999999999999999998                  33333321  1223334455688899999999


Q ss_pred             HHhhcCCCch--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089          289 FAMRDGDDNV--KALFRQGQAYMALNDVDAAVESFE--KALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       289 ~al~~~p~~~--ka~~~~g~~~~~~~~~~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      ++++.+|+++  ..+..+|.+++.+|++++|.++|+  ++++.+|++.. ...++.+...+++.+++ .+.|+
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A-~~~~~  394 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA-AAMRQ  394 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHH
Confidence            9999999999  888899999999999999999999  58888887665 44888888888776555 44444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.25  E-value=2.2e-05  Score=70.64  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=98.6

Q ss_pred             HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~  287 (361)
                      .++.|.-+.+++..+....+.+.|.....+|+.                  .+|.++.+-.-+|.+++..|+|+.|++.+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~  237 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ------------------ADKKCVRASIILGRVELAKGDYQKAVEAL  237 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------------------hCccceehhhhhhHHHHhccchHHHHHHH
Confidence            345677788889999999999999999999999                  88899999999999999999999999999


Q ss_pred             HHHhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          288 EFAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       288 ~~al~~~p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      +.+++.||+. +.+.-.+..||..+|+.++.+..+.++.+..++...
T Consensus       238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence            9999999988 678889999999999999999999999999876543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.25  E-value=2.5e-06  Score=77.10  Aligned_cols=86  Identities=16%  Similarity=0.096  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      .--.|..|+++|.|++||.+|.+++.++|.|+-.+.++|.+|+.++.|..|..++..|+.|+-....++...+.++..++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35678899999999999999999999999999999999999999999999999999999998777777777777777776


Q ss_pred             HHHHHH
Q 018089          347 ERREQE  352 (361)
Q Consensus       347 ~~~~~~  352 (361)
                      ..+++.
T Consensus       180 ~~~EAK  185 (536)
T KOG4648|consen  180 NNMEAK  185 (536)
T ss_pred             hHHHHH
Confidence            655553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=4.9e-06  Score=77.06  Aligned_cols=100  Identities=15%  Similarity=0.111  Sum_probs=89.5

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+.+++..+.+.++|..|+..-.++|+                  ++|.++.+++.+|.+++.+++|+.|+.++++|+.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe------------------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLE------------------LDPNNVKALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3467789999999999999999999999                  9999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCCC
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAA-VESFEKALKLEPN  330 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A-~~~~~~a~~l~p~  330 (361)
                      ++|.|-.+...+..+.....++.+. .+.|.+.+..-+.
T Consensus       320 ~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  320 LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999988888899888888877665 6778888776553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=6.1e-06  Score=79.02  Aligned_cols=126  Identities=22%  Similarity=0.131  Sum_probs=115.3

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ++.+..|...|..|+--+++.+|.++|.||-.                  +++....+|...|..+...++.++|+..|.
T Consensus       309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~------------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~  370 (611)
T KOG1173|consen  309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATT------------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYF  370 (611)
T ss_pred             CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh------------------cCccccHHHHHHhHHhhhcchHHHHHHHHH
Confidence            34567789999999999999999999999988                  899999999999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .|-++-|..-.-.+.+|.=|..++.++.|...|..|+.+.|+++.+...++-+.-..++..++.
T Consensus       371 tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~  434 (611)
T KOG1173|consen  371 TAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEAL  434 (611)
T ss_pred             HHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHH
Confidence            9999999999999999999999999999999999999999999999998888776666665553

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=1.6e-06  Score=77.86  Aligned_cols=84  Identities=11%  Similarity=0.091  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .-|.++..+...|.++..++++++|++.|..++.++|.++++.--.|.-|+.-++.|-|+.+|++.+.+--.+++...++
T Consensus       285 ~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni  364 (478)
T KOG1129|consen  285 SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI  364 (478)
T ss_pred             cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence            45666677777777777777777777777777777777777777777777777777777777777777766677666666


Q ss_pred             HHHH
Q 018089          339 AVAK  342 (361)
Q Consensus       339 ~~~~  342 (361)
                      +.|-
T Consensus       365 gLCC  368 (478)
T KOG1129|consen  365 GLCC  368 (478)
T ss_pred             HHHH
Confidence            6553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.21  E-value=2.2e-06  Score=51.38  Aligned_cols=32  Identities=38%  Similarity=0.797  Sum_probs=20.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      ++|+++|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.21  E-value=1.1e-05  Score=79.53  Aligned_cols=54  Identities=15%  Similarity=-0.049  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchh
Q 018089          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK  299 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~k  299 (361)
                      ++++|...+++|++                  ++| +..+|..+|.++...|++++|++.|++|++++|....
T Consensus       435 ~~~~A~~~l~rAl~------------------L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        435 KTDEAYQAINKAID------------------LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CHHHHHHHHHHHHH------------------cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            45666666666665                  677 4678999999999999999999999999999998875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.19  E-value=2.1e-05  Score=71.96  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=86.1

Q ss_pred             hhHHHHHhccHHHHh-hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      .+..+..+|..+... ++++.|+++|++|+++...-            ........++.++|.++.++++|++|+..|++
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE------------GSPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            577788889999998 99999999999999976422            12334567889999999999999999999999


Q ss_pred             HhhcCCC------chh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089          290 AMRDGDD------NVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       290 al~~~p~------~~k-a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      ++...-+      +++ .+++.+.|++.+||+..|...+++....+|.-
T Consensus       181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            9875322      233 45678889999999999999999999999853

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.18  E-value=2e-05  Score=70.96  Aligned_cols=88  Identities=14%  Similarity=0.091  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 018089          264 SQIFTNSSACK-LKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKK  336 (361)
Q Consensus       264 ~~~~~nla~~~-~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~  336 (361)
                      ...+++.|..+ ++.++|++|+..|+..+...|++   +.++|++|.+|+..|++++|+..|+++++..|++   +.++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45667888876 66799999999999999999988   5899999999999999999999999999999885   56777


Q ss_pred             HHHHHHHHHHHHHHH
Q 018089          337 ELAVAKKKIHERREQ  351 (361)
Q Consensus       337 ~l~~~~~~~~~~~~~  351 (361)
                      .++.+...+++..++
T Consensus       222 klg~~~~~~g~~~~A  236 (263)
T PRK10803        222 KVGVIMQDKGDTAKA  236 (263)
T ss_pred             HHHHHHHHcCCHHHH
Confidence            777777666555444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.17  E-value=0.00012  Score=56.21  Aligned_cols=106  Identities=17%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh----
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM----  291 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al----  291 (361)
                      ...|..-+..|-|++|...|++|++...+.      ..++.=..+..+.-|+..|+.++..+|+|++++...+++|    
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srti------P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTI------PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-------TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccC------ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            445666778899999999999999965543      2222223567788899999999999999999999999999    


Q ss_pred             ---hcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          292 ---RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       292 ---~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                         +++.+.    +.+.+++|.++..+|+.++|+..|+.+-+.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               455553    677889999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.16  E-value=1.9e-06  Score=51.72  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE  319 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~  319 (361)
                      |++||+++|+++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999963

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.16  E-value=1.4e-05  Score=78.63  Aligned_cols=90  Identities=19%  Similarity=0.229  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      +..+...+|......++|+++..+++..++++|-....||++|.|..++++++.|..+|.++..++|++.++|.++..+.
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            34444555555566799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 018089          343 KKIHERREQE  352 (361)
Q Consensus       343 ~~~~~~~~~~  352 (361)
                      -++++.+++-
T Consensus       564 i~~~~k~ra~  573 (777)
T KOG1128|consen  564 IRLKKKKRAF  573 (777)
T ss_pred             HHHhhhHHHH
Confidence            8888776653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.15  E-value=6e-06  Score=52.78  Aligned_cols=42  Identities=31%  Similarity=0.408  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  340 (361)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|..++..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456666777777777777777777777777777666666554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.13  E-value=2.9e-05  Score=73.65  Aligned_cols=109  Identities=16%  Similarity=0.112  Sum_probs=98.2

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHH
Q 018089          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~  302 (361)
                      ...++|+.|++.+++..+                  .+|   .+..-+|.+++..++..+|++...++|..+|.++..+.
T Consensus       180 ~~t~~~~~ai~lle~L~~------------------~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~  238 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRE------------------RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN  238 (395)
T ss_pred             hhcccHHHHHHHHHHHHh------------------cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            345789999999999776                  333   34566899999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          303 RQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       303 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      -.+..+...++++.|+...+++.++.|++-..|..|+++...+++.+++-
T Consensus       239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  239 LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999988874

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.11  E-value=2.1e-05  Score=76.57  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=110.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      .+.+--.|-.+...|+-++|..+-..+++                  .++....||.-+|.++..-++|++||.+|..|+
T Consensus        41 geslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl  102 (700)
T KOG1156|consen   41 GESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL  102 (700)
T ss_pred             chhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            34455679999999999999999999999                  778888999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .++|+|...|.-++....++++|+.....-.+.+++.|.+...|..++...-.+.++..+
T Consensus       103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen  103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888888888777766654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.10  E-value=0.00012  Score=59.77  Aligned_cols=114  Identities=17%  Similarity=0.067  Sum_probs=85.6

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCC-c---cchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID-E---GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      .+...|......++...++..+.+++.+..--.-..... .   .....+......+...++..+...|++++|+..|++
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            344556667778899999999999999774221111111 1   112356677778888999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      ++.++|.+..+|..+-.+|..+|+..+|++.|+++.+.
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.09  E-value=4.7e-05  Score=71.27  Aligned_cols=77  Identities=13%  Similarity=-0.030  Sum_probs=64.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      --+|..|+...-+++||.++++|--+.|+.+|--.-.+.|+...|+|..|.+.|+...+.-|+|.+.++.|-.+.-.
T Consensus       630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d  706 (840)
T KOG2003|consen  630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD  706 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence            33455555566688999999999999999999999999999999999999999999999999998888777665443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=8e-06  Score=48.79  Aligned_cols=34  Identities=47%  Similarity=0.793  Sum_probs=24.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      +++|+.+|.+++.+|++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.08  E-value=6e-06  Score=49.47  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      .+|+++|.+|..++++++|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            579999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.07  E-value=2.2e-05  Score=79.66  Aligned_cols=141  Identities=18%  Similarity=0.162  Sum_probs=112.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc----------cccCCCCccch--------hhHHHHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC----------WEKEGIDEGKS--------SSLRKTKSQIFTNSSA  272 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~----------~~~~~~~~~~~--------~~~~~~~~~~~~nla~  272 (361)
                      .+..+-.+|..|..--+...|..+|.+|.++=..-          +.+....++-.        ..........|..+|.
T Consensus       491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            67888889999988888889999999988754211          11111111110        0112233345667899


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .|++.++..+|+.+++.|++.+|.+..+|..+|.+|...|+|..|+..|.+|..++|.+.......+.+++.+.++++.
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.3e-05  Score=72.60  Aligned_cols=110  Identities=12%  Similarity=0.054  Sum_probs=73.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..|.-.|-.+|..++|..|+.+-+|+|+                  .++....++...|.....+++.++|+-.|..|+
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq  361 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCID------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ  361 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhc------------------cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence            44455566666777777777777777776                  666666666666666667777777777777777


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      .+.|..-..|-.+-.+|...|.+.+|...-..+++.-|+++..+.+++
T Consensus       362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            777666666666666666666666666666666666666666655554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.03  E-value=0.00023  Score=62.54  Aligned_cols=130  Identities=16%  Similarity=0.159  Sum_probs=104.2

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+++.|...+..|+|.+|++.|++....-+               ..|....+.+.++-++++.++|++|+...++-+
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p---------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi   98 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP---------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI   98 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            56789999999999999999999999887332               455667788999999999999999999999999


Q ss_pred             hcCCCch---hHHHHHHHHHHhcC-----C---HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNV---KALFRQGQAYMALN-----D---VDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERREQEKKQY  356 (361)
Q Consensus       292 ~~~p~~~---ka~~~~g~~~~~~~-----~---~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~~~~k~~~  356 (361)
                      ++.|.+.   -++|-+|.+++..=     |   -.+|...|+..+.--|+.+   .+...+..+...+...+-.--..|
T Consensus        99 ~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY  177 (254)
T COG4105          99 RLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY  177 (254)
T ss_pred             HhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999774   57888898876542     2   3578888999999999864   566677777777776665544444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.03  E-value=0.00017  Score=62.68  Aligned_cols=123  Identities=15%  Similarity=0.139  Sum_probs=92.0

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-----------CH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------DL  280 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----------~~  280 (361)
                      ..+...+|..+++.|+|..|+..|++.++.-|               .++....+++.+|.+++++.           ..
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---------------~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~  106 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---------------NSPKADYALYMLGLSYYKQIPGILRSDRDQTST  106 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---------------T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CCcchhhHHHHHHHHHHHhCccchhcccChHHH
Confidence            45677899999999999999999999999554               34456678888999877653           34


Q ss_pred             HHHHHHHHHHhhcCCCch-----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHH
Q 018089          281 KGALLDTEFAMRDGDDNV-----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---IKKELAV  340 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~-----------------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~---~~~~l~~  340 (361)
                      .+|+..++..+...|++.                 .--+..|.-|+..|.|..|+.-++.+++--|+.+.   ++..+.+
T Consensus       107 ~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~  186 (203)
T PF13525_consen  107 RKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE  186 (203)
T ss_dssp             HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            589999999999999872                 22344678889999999999999999999998764   4555555


Q ss_pred             HHHHHHHHH
Q 018089          341 AKKKIHERR  349 (361)
Q Consensus       341 ~~~~~~~~~  349 (361)
                      +...++...
T Consensus       187 ~y~~l~~~~  195 (203)
T PF13525_consen  187 AYYKLGLKQ  195 (203)
T ss_dssp             HHHHTT-HH
T ss_pred             HHHHhCChH
Confidence            555555544

>PRK11906 transcriptional regulator; Provisional

Probab=98.03  E-value=2.5e-05  Score=74.10  Aligned_cols=90  Identities=16%  Similarity=0.112  Sum_probs=82.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~  304 (361)
                      ...-.+|.+.-++|++                  +++.++.++..+|.+....++++.|+..+++|+.++|+++.+||..
T Consensus       317 ~~~~~~a~~~A~rAve------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~  378 (458)
T PRK11906        317 ELAAQKALELLDYVSD------------------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR  378 (458)
T ss_pred             hHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence            3455677777788887                  8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          305 GQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       305 g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      |.+....|+.++|.+.++++++++|.-.
T Consensus       379 ~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        379 ALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            9999999999999999999999999654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.03  E-value=5.9e-05  Score=72.54  Aligned_cols=120  Identities=18%  Similarity=0.115  Sum_probs=95.3

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      +.+......+..+...|+.++|.+..+++++                  ..+ +..+..-.+.  +..++.++++..+++
T Consensus       261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------------------~~~-~~~l~~l~~~--l~~~~~~~al~~~e~  319 (398)
T PRK10747        261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK------------------RQY-DERLVLLIPR--LKTNNPEQLEKVLRQ  319 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCC-CHHHHHHHhh--ccCCChHHHHHHHHH
Confidence            3455667789999999999999999999987                  222 1222222222  245899999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .++.+|+++..++.+|.++...+++++|.+.|++++++.|++.. ...++.+.....+.+++
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A  380 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA  380 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999998654 44788888877776655

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.01  E-value=1.1e-05  Score=51.61  Aligned_cols=42  Identities=17%  Similarity=0.021  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~  306 (361)
                      .++..+|.+|..+|++++|+..++++++.+|++..++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            468999999999999999999999999999999999999886

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.00  E-value=5.3e-05  Score=74.52  Aligned_cols=91  Identities=20%  Similarity=0.120  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      ...+++.+|+.|-.+|++++|+.+.++||...|+.++.|+.+|.++...|++++|.++++.|-.+|+.|.-+........
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            35677999999999999999999999999999999999999999999999999999999999999999988777777766


Q ss_pred             HHHHHHHHHHH
Q 018089          343 KKIHERREQEK  353 (361)
Q Consensus       343 ~~~~~~~~~~k  353 (361)
                      -+..+.+++++
T Consensus       273 LRa~~~e~A~~  283 (517)
T PF12569_consen  273 LRAGRIEEAEK  283 (517)
T ss_pred             HHCCCHHHHHH
Confidence            66666665544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.99  E-value=3.1e-05  Score=70.87  Aligned_cols=113  Identities=17%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCC
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGD  295 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~Ai~~~~~al~~~p  295 (361)
                      .-..+.+.++++.|.+.++.+-+                  .++.......-.|.+.+..|  .+++|...|++.....+
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~------------------~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~  198 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQ------------------IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG  198 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHC------------------CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh------------------cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC
Confidence            44567788999999888877654                  11111122222222222333  57888888888777767


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      .++..+..+|.|++.+|+|++|...++++++.+|+++....++..+...+++.
T Consensus       199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            77788888888888888888888888888888888887777777666555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.97  E-value=6.6e-05  Score=68.69  Aligned_cols=130  Identities=19%  Similarity=0.164  Sum_probs=88.8

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      -+.+..+..-|+.|-..++|++|.++|.++.......            ........+|.+.+.||.+. ++++|+..++
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~------------~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~   98 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL------------GDKFEAAKAYEEAANCYKKG-DPDEAIECYE   98 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence            3456677777888888999999999999998744321            12334566777777777666 9999999999


Q ss_pred             HHhhcCC-----C-chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGD-----D-NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       289 ~al~~~p-----~-~~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +|+.+.-     . -.+++.++|.+|... +++++|++.|++|+++-..+      ..+...++.+...++++.++
T Consensus        99 ~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen   99 KAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence            9997531     1 267888899999888 89999999999998873321      13444555555555555554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.95  E-value=2.7e-05  Score=72.10  Aligned_cols=134  Identities=16%  Similarity=0.214  Sum_probs=101.1

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      ++...-..+-++||.+|-.|+|+.|+..-+.-|++..+..            .....-.++.|+|.|+.-+|+++.|+++
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG------------DrAaeRRA~sNlgN~hiflg~fe~A~eh  257 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG------------DRAAERRAHSNLGNCHIFLGNFELAIEH  257 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh------------hHHHHHHhhcccchhhhhhcccHhHHHH
Confidence            3344455667789999999999999999998888665431            1223456899999999999999999999


Q ss_pred             HHHHhhcC----C--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHHH
Q 018089          287 TEFAMRDG----D--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       287 ~~~al~~~----p--~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |..++.+.    .  -.+...|.+|..|.-+.+++.|+.+..+-+.+..+      ...+...|+.+...+.+.+++.
T Consensus       258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence            99887553    2  23678899999999999999999999887766532      2345556666666666555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.94  E-value=7.1e-05  Score=77.36  Aligned_cols=114  Identities=16%  Similarity=0.182  Sum_probs=97.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .-.+++.+|.+|-+.|++++|...|+++|+                  .+|.++.+.+|+|-.|... +.++|++++.+|
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVK------------------ADRDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            335788899999999999999999999999                  8899999999999999999 999999999999


Q ss_pred             h--------------------hcCCCchhH--------HHHHH------------HHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          291 M--------------------RDGDDNVKA--------LFRQG------------QAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       291 l--------------------~~~p~~~ka--------~~~~g------------~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      +                    ..+|++..-        .-.++            .+|...++|++++..|+.+++++|.
T Consensus       176 V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~  255 (906)
T PRK14720        176 IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK  255 (906)
T ss_pred             HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence            8                    334544322        22234            7788899999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 018089          331 DGGIKKELAVAKK  343 (361)
Q Consensus       331 ~~~~~~~l~~~~~  343 (361)
                      |..++..+..+..
T Consensus       256 n~~a~~~l~~~y~  268 (906)
T PRK14720        256 NNKAREELIRFYK  268 (906)
T ss_pred             chhhHHHHHHHHH
Confidence            9999988888876

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00022  Score=66.21  Aligned_cols=63  Identities=14%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      ..+.+.-+|+.+...++.++|+-.|+.|..                  +.|....+|..+-.||+..|.+.+|......+
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~  394 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQM------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWT  394 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHh------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence            456778899999999999999999999999                  77788888888888888877766655544444


Q ss_pred             h
Q 018089          291 M  291 (361)
Q Consensus       291 l  291 (361)
                      +
T Consensus       395 ~  395 (564)
T KOG1174|consen  395 I  395 (564)
T ss_pred             H
Confidence            4

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.90  E-value=8.5e-05  Score=49.20  Aligned_cols=49  Identities=16%  Similarity=0.276  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ..+|.+|.+++.+|+|++|..+.+.+++++|+|..+..+...++.++..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999998888888777653

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00011  Score=61.82  Aligned_cols=80  Identities=21%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          271 SACKLKLGDLKGALLDTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       271 a~~~~~l~~~~~Ai~~~~~al~~~p~~-----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      |.-+++.|+|.+|...|+.||.+.|..     +-.|.++|.|+..++.++.|+.++.+|++|+|.+..++...+.+...+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            445678999999999999999999865     457889999999999999999999999999999887777777777776


Q ss_pred             HHHHH
Q 018089          346 HERRE  350 (361)
Q Consensus       346 ~~~~~  350 (361)
                      ...+.
T Consensus       182 ek~ee  186 (271)
T KOG4234|consen  182 EKYEE  186 (271)
T ss_pred             hhHHH
Confidence            54444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.86  E-value=0.00022  Score=69.81  Aligned_cols=120  Identities=10%  Similarity=0.010  Sum_probs=75.6

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +...++...-.++.++|+...+++|+                  .-|....+|.-+|+++-++++.+.|...|...++.-
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALK------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC  715 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHH------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence            33344444455556666666666666                  455566666777777777777777777777777777


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |.++..|..++.+-...|+.-.|...|+++..-+|.|...|...-.++.+......++
T Consensus       716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~  773 (913)
T KOG0495|consen  716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE  773 (913)
T ss_pred             CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence            7777777767666666666667777777776667766666655555555554444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.86  E-value=0.00039  Score=54.62  Aligned_cols=65  Identities=25%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      +-.-|.....-|+.+.|++.+.++|.+-|.++.+|.++++++.-+|+.++|++++++|+++....
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            34456677789999999999999999999999999999999999999999999999999997543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=9e-05  Score=67.89  Aligned_cols=93  Identities=17%  Similarity=0.197  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 018089          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~  306 (361)
                      .+++|...|++...                  ..+..+.+++.+|.|++.+|+|++|...+.+|+..+|.++.++.+++.
T Consensus       182 ~~~~A~y~f~El~~------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv  243 (290)
T PF04733_consen  182 KYQDAFYIFEELSD------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV  243 (290)
T ss_dssp             CCCHHHHHHHHHHC------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            58899999998654                  223456778999999999999999999999999999999999999999


Q ss_pred             HHHhcCCH-HHHHHHHHHHHhhCCCCHHHHHH
Q 018089          307 AYMALNDV-DAAVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       307 ~~~~~~~~-~~A~~~~~~a~~l~p~~~~~~~~  337 (361)
                      +...+|+. +.+.+++.+....+|+++.+...
T Consensus       244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            99999988 66778899888899998866443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.85  E-value=6.9e-05  Score=74.73  Aligned_cols=129  Identities=23%  Similarity=0.406  Sum_probs=112.7

Q ss_pred             CchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--CCH
Q 018089          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL  280 (361)
Q Consensus       203 ~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~  280 (361)
                      .+....+..+...+..||.+|.+++|..|.-.|..++.+.+.              .+.....+..|.+.|++.+  ++|
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--------------~~~~~a~~~~~~~s~~m~~~l~~~  109 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--------------DHHVVATLRSNQASCYMQLGLGEY  109 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--------------cchhhhhHHHHHHHHHhhcCccch
Confidence            466777888999999999999999999999999999986652              4556778899999998875  699


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      ..++..|.-|+...|...+++.+++.+|..++.++-|++++.-....+|.+..+..-+.+++..+
T Consensus       110 ~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  110 PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999977666555555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.0002  Score=63.41  Aligned_cols=85  Identities=19%  Similarity=0.200  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 018089          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAV  340 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~  340 (361)
                      .++.|.-+++.|+|..|...|..-+...|++   +.|+|++|.+++.+|+|++|...|..+.+-.|..+   +....|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6888888999999999999999999999987   68999999999999999999999999999998764   67777777


Q ss_pred             HHHHHHHHHHH
Q 018089          341 AKKKIHERREQ  351 (361)
Q Consensus       341 ~~~~~~~~~~~  351 (361)
                      +..++++..++
T Consensus       224 ~~~~l~~~d~A  234 (262)
T COG1729         224 SLGRLGNTDEA  234 (262)
T ss_pred             HHHHhcCHHHH
Confidence            77777766655

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.81  E-value=4e-05  Score=45.67  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      .+|.++|.+++++|++++|+.+++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.81  E-value=7.3e-05  Score=69.34  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=88.6

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..-.++.++||.+.-.|+|+.|+++|++++.++.+..            -....+..++.+|.+|.-+.++++||.+.++
T Consensus       233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~r  300 (639)
T KOG1130|consen  233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQR  300 (639)
T ss_pred             HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3445677899999999999999999999998775441            2234456678999999999999999999999


Q ss_pred             HhhcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          290 AMRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       290 al~~~p------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      -|.+..      -...+++.+|.++..+|..++|+.+.++.+++.
T Consensus       301 HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  301 HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            887643      236899999999999999999999988887763

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.77  E-value=0.00031  Score=65.39  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=90.5

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      ...|...|+++.|..|.-.|..||+++..-.....+-......+.....-+...+..||+++++.+.|+...-+.|.++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            45678888999999999999999998864433333333333345666667788999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      .+..-+.+.|.|+..+.+|-+|.+..--|.-
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887665543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.76  E-value=0.00021  Score=57.47  Aligned_cols=70  Identities=17%  Similarity=0.230  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      ...+++.|...++.|+|.+|++.++.+....|..   ..+.+.++.+|+..++|++|+..+++.++|+|.++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            3457888999999999999999999999988754   689999999999999999999999999999998863

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.76  E-value=0.00013  Score=74.35  Aligned_cols=114  Identities=11%  Similarity=0.003  Sum_probs=100.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ...|...|-.+.+.+++..|+..++.|++                  .+|.+..+|..+|.+|...|.|..|+..+++|.
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR------------------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALR------------------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhc------------------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            44555689999999999999999999999                  899999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      .++|.+.-+.|..+.....+|+|++|+..+...+..-.........++++.-
T Consensus       624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~i  675 (1238)
T KOG1127|consen  624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVI  675 (1238)
T ss_pred             hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            9999999999999999999999999999999888765554455555554433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.00019  Score=65.46  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHH
Q 018089          218 FGNEHYKKQDYKMALRKYRKALR  240 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~  240 (361)
                      +|-.+|..|+|++|++.|+-+..
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~   85 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMN   85 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhc
Confidence            68889999999999999988766

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.75  E-value=0.0002  Score=63.98  Aligned_cols=79  Identities=15%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---IKK  336 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~---ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~---~~~  336 (361)
                      ....++..|.-++..|+|++|+..+++++...|...   .+.+.+|.+|+.+++|++|+..+++.++++|+++.   +..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            445578889999999999999999999999999875   45699999999999999999999999999998763   444


Q ss_pred             HHHHH
Q 018089          337 ELAVA  341 (361)
Q Consensus       337 ~l~~~  341 (361)
                      .++.+
T Consensus       111 ~~g~~  115 (243)
T PRK10866        111 MRGLT  115 (243)
T ss_pred             HHHHh
Confidence            44444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=7.4e-05  Score=64.56  Aligned_cols=81  Identities=14%  Similarity=-0.015  Sum_probs=71.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +.+|+.-+.|..|+..|.+||.++|..+..|-+++.||+++++++.+..+.++|++++|+..-....|+......+.+.+
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            45667778899999999999999999999999999999999999999999999999999988888888887766665544


Q ss_pred             H
Q 018089          351 Q  351 (361)
Q Consensus       351 ~  351 (361)
                      .
T Consensus        97 a   97 (284)
T KOG4642|consen   97 A   97 (284)
T ss_pred             H
Confidence            4

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.71  E-value=0.00021  Score=69.84  Aligned_cols=86  Identities=21%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      ..+|+.-+.....+++.++|+..|+++|+..|+..|.|.-+|+++..+++.+.|.+.|..-++..|+....|..|..+.+
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            35677777788889999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHH
Q 018089          344 KIHERR  349 (361)
Q Consensus       344 ~~~~~~  349 (361)
                      +.....
T Consensus       731 k~~~~~  736 (913)
T KOG0495|consen  731 KDGQLV  736 (913)
T ss_pred             Hhcchh
Confidence            775433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.64  E-value=9e-05  Score=44.16  Aligned_cols=32  Identities=44%  Similarity=0.760  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      ++|+.+|.+|..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            56777777777777777777777777777774

...

>PRK10941 hypothetical protein; Provisional

Probab=97.63  E-value=0.00064  Score=61.31  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      .......|+=.+|++.++++.|+.+++..+.++|+++.-+--+|.+|.+++.+..|..+|+..++..|+++.+......+
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999999999999999999999998765544444


Q ss_pred             H
Q 018089          342 K  342 (361)
Q Consensus       342 ~  342 (361)
                      .
T Consensus       259 ~  259 (269)
T PRK10941        259 H  259 (269)
T ss_pred             H
Confidence            3

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.0016  Score=57.37  Aligned_cols=121  Identities=14%  Similarity=0.101  Sum_probs=95.7

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      .-...+|......|+-+.|..++++.-+.....            .--........|.+.+|+-.++|..|...++++++
T Consensus       213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~  280 (366)
T KOG2796|consen  213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR  280 (366)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh------------hccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence            335567888888999999998888554311000            01123456678999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAVAKKKI  345 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~~~~~~~  345 (361)
                      .||.++.+..+.|.|++.+|+..+|++.++.++...|.   +..+..+|..+.+..
T Consensus       281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~  336 (366)
T KOG2796|consen  281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELE  336 (366)
T ss_pred             cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997   445666666655443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.00076  Score=61.64  Aligned_cols=87  Identities=22%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka  300 (361)
                      .+..+++|..|+...+-.+.          .+++++       ..+-.-+|.|++++|+|++|+..|..+...+..+.+.
T Consensus        31 dfls~rDytGAislLefk~~----------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el   93 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLN----------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL   93 (557)
T ss_pred             HHHhcccchhHHHHHHHhhc----------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence            35567889888888776654          111111       2233456899999999999999999999988888999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          301 LFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      +.++|.|++.+|.|.+|.....+|
T Consensus        94 ~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   94 GVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999876554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.49  E-value=5.6e-05  Score=45.27  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             HHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 018089          234 KYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       234 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~  285 (361)
                      +|++||+                  ++|.++.+|+|+|.+|..+|++++|++
T Consensus         1 ~y~kAie------------------~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE------------------LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH------------------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4889999                  999999999999999999999999963

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.46  E-value=0.00039  Score=59.38  Aligned_cols=81  Identities=20%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      +...+.+++-+|..|-.+|-+.-|..++.++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999877665554


Q ss_pred             H
Q 018089          340 V  340 (361)
Q Consensus       340 ~  340 (361)
                      .
T Consensus       141 i  141 (297)
T COG4785         141 I  141 (297)
T ss_pred             e
Confidence            3

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.45  E-value=0.0015  Score=64.40  Aligned_cols=98  Identities=14%  Similarity=0.069  Sum_probs=89.8

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+.-++..+-..|+|++|+++.++||.                  ..|..+.+|...|.++-++|++.+|.+..+.|-.
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~  256 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIE------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE  256 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4567778888899999999999999999                  7888899999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      +|+.+--.....+..++..|+.++|...+....+-+
T Consensus       257 LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  257 LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            999988888888999999999999999998776655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.41  E-value=0.0046  Score=57.40  Aligned_cols=126  Identities=13%  Similarity=0.067  Sum_probs=107.6

Q ss_pred             HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~  287 (361)
                      +...+......|..-+-.|+|..|.....++-+                  -.+.-..+|..-|.+.-++|+++.|-.+.
T Consensus        80 Krrra~~~~~egl~~l~eG~~~qAEkl~~rnae------------------~~e~p~l~~l~aA~AA~qrgd~~~an~yL  141 (400)
T COG3071          80 KRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE------------------HGEQPVLAYLLAAEAAQQRGDEDRANRYL  141 (400)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh------------------cCcchHHHHHHHHHHHHhcccHHHHHHHH
Confidence            344677778888888899999999999998766                  44555667788888889999999999999


Q ss_pred             HHHhhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          288 EFAMRDGD-DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       288 ~~al~~~p-~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .+|-+..+ +...+...++......|+++.|...+.++++..|.++.+......+...++++.+-
T Consensus       142 ~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l  206 (400)
T COG3071         142 AEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL  206 (400)
T ss_pred             HHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence            99999954 45678888999999999999999999999999999999999999888888776653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.40  E-value=0.0048  Score=48.81  Aligned_cols=85  Identities=14%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHhh-cCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 018089          262 TKSQIFTNSSACKLKLG---DLKGALLDTEFAMR-DGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~---~~~~Ai~~~~~al~-~~p~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  336 (361)
                      ......+|+|.+..+..   +.++.|..++..++ -+|+ .-..+|.+|..++.+++|+.|+.+++..++.+|+|..+..
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            34566789999988865   56778889999996 5554 3678899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHH
Q 018089          337 ELAVAKKKIH  346 (361)
Q Consensus       337 ~l~~~~~~~~  346 (361)
                      +-..++.++.
T Consensus       110 Lk~~ied~it  119 (149)
T KOG3364|consen  110 LKETIEDKIT  119 (149)
T ss_pred             HHHHHHHHHh
Confidence            8777777665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.39  E-value=0.0033  Score=63.78  Aligned_cols=116  Identities=21%  Similarity=0.163  Sum_probs=96.6

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka  300 (361)
                      .....++|..|+....+.++                  ..|....+...-|....++|++++|....+..-...+++...
T Consensus        18 d~ld~~qfkkal~~~~kllk------------------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t   79 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLK------------------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT   79 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH
Confidence            34578999999999999999                  888888888999999999999999996555555667788888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      +--+-.+|..++++++|...|+++...+|+ .+....+=.+.-+.+.+++.++..
T Consensus        80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa  133 (932)
T KOG2053|consen   80 LQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAA  133 (932)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 666666666666666666655443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0099  Score=51.56  Aligned_cols=127  Identities=19%  Similarity=0.141  Sum_probs=91.1

Q ss_pred             hHHHHHhccHHHHh-hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      |..+.++|..|-.. .+++.|+.+|++|-++...-            ......-.|++..|.....+++|.+||..|+++
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e------------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv  180 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE------------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV  180 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666555 78999999999998865310            123344467788888888999999999999999


Q ss_pred             hhcCCCc------hhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDN------VKAL-FRQGQAYMALNDVDAAVESFEKALKLEPNDG--GIKKELAVAKKKIHERRE  350 (361)
Q Consensus       291 l~~~p~~------~ka~-~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~--~~~~~l~~~~~~~~~~~~  350 (361)
                      .+..-++      .|-| +.-|.|++...+.-.|...+++..+++|.-.  .-.+.|..+...+.+...
T Consensus       181 a~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~  249 (288)
T KOG1586|consen  181 ARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDI  249 (288)
T ss_pred             HHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhH
Confidence            9765544      4444 4567888888999999999999999999743  334455555555554433

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.0019  Score=63.25  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+++.+..+|+.++|..+++.|...+++++.-            ..+........+++.||+++.+.++|++++++|=+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D------------~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~  422 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD------------NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE  422 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            346788999999999999999999999976532            24556688899999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      .+|.++-.-+..-++...-+.-++|+....+....
T Consensus       423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            99999888777888888888889998887766543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.34  E-value=0.00076  Score=61.80  Aligned_cols=103  Identities=24%  Similarity=0.245  Sum_probs=82.5

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .+..+|+.+...+.|+.+++.|++|++++....+            .-....++..++..+..++++++|+-+..+|+++
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D------------~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l  191 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD------------AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL  191 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC------------ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence            3455899999999999999999999997754311            1123456888999999999999999999999876


Q ss_pred             CCC------c----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          294 GDD------N----VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       294 ~p~------~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      -..      +    .-++|+++.++..+|+.-+|.++.+++.++.
T Consensus       192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            432      1    3578889999999999999999999998774

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.0071  Score=51.05  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=82.8

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +......+..++..+++++|+...+.++....               .......+-.++|.+.+.+|.+++|+..++..-
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~  153 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK---------------DENLKALAALRLARVQLQQKKADAALKTLDTIK  153 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccch---------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence            44557788999999999999999999996321               344666778999999999999999988776544


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      .-+ -.+..--.+|.++...|+-++|...|+++++.+++.
T Consensus       154 ~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         154 EES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             ccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            322 123345678999999999999999999999998544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.30  E-value=0.00035  Score=41.53  Aligned_cols=33  Identities=30%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      .+|..+|.+|.++|++++|+.+++++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999854

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.0026  Score=61.74  Aligned_cols=91  Identities=15%  Similarity=0.219  Sum_probs=74.7

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-  294 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~-  294 (361)
                      ++.+-++|+.+..++|+..++-                     +++.+..+...+|++++++++|++|+..|+..++-+ 
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~---------------------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKG---------------------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhc---------------------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            5788888999999999999882                     334455677889999999999999999999986222 


Q ss_pred             -----------------------------CC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          295 -----------------------------DD-NVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       295 -----------------------------p~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                                                   |+ +...+|+.|.++...|+|.+|++.+++|+++
T Consensus       142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence                                         22 4578999999999999999999999999443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.23  E-value=0.0066  Score=52.96  Aligned_cols=101  Identities=21%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHH
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-------KGALLDTEFA  290 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-------~~Ai~~~~~a  290 (361)
                      .+..+-....+++|++.|.-||-......           ......+.+++.+|.+|..+++.       ..|+..|.+|
T Consensus        83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~-----------~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a  151 (214)
T PF09986_consen   83 KPRDFSGERTLEEAIESYKLALLCAQIKK-----------EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA  151 (214)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence            34466678899999999999987432210           02225678899999999999984       4566666666


Q ss_pred             hhcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          291 MRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       291 l~~~p------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      +....      +.....|-+|.++..+|++++|+.+|.+++..--
T Consensus       152 ~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  152 YENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            65432      2368999999999999999999999999987543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00046  Score=64.49  Aligned_cols=146  Identities=24%  Similarity=0.298  Sum_probs=111.1

Q ss_pred             eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCC----ccCC-CCCC
Q 018089           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE----SIYG-LKFE   92 (361)
Q Consensus        18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~----~~~~-~~~~   92 (361)
                      -.|.|+++.+-.|.-++-|...|.-.           |+++..|.||+..+++|.||..-....+|.    +..+ .+|+
T Consensus       112 s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP  180 (558)
T KOG0882|consen  112 SLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP  180 (558)
T ss_pred             eeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence            39999999999999999999998765           899999999999999999986543333332    1111 1233


Q ss_pred             CC--CcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEeccc
Q 018089           93 DE--NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC  170 (361)
Q Consensus        93 ~e--~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~  170 (361)
                      ..  ++.++|.. -+......-..-.+-+|+++....+.+..+-.|+|.+..+.++++.|....++....|..++.+...
T Consensus       181 r~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V  259 (558)
T KOG0882|consen  181 RTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV  259 (558)
T ss_pred             cccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence            32  45666644 4444444333344677888888888888899999999999999999999999998899998888887


Q ss_pred             cccCC
Q 018089          171 GEIPE  175 (361)
Q Consensus       171 ~~~~~  175 (361)
                      ...+.
T Consensus       260 elgRR  264 (558)
T KOG0882|consen  260 ELGRR  264 (558)
T ss_pred             ehhhh
Confidence            66544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.01  Score=53.36  Aligned_cols=115  Identities=19%  Similarity=0.200  Sum_probs=93.8

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF----  289 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~----  289 (361)
                      .-...+..+...+++.+|...+..++.                  ..+....+...+|.||+..|+.+.|...+..    
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~------------------~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQ------------------AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHH------------------hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            345678888999999999999999998                  6667778889999999999998665543332    


Q ss_pred             ------------------------------HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCHHHHHH
Q 018089          290 ------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGIKKE  337 (361)
Q Consensus       290 ------------------------------al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~~  337 (361)
                                                    .+..+|++..+-+.+|..+...|++++|.+.+-..++.+-  +|..+++.
T Consensus       198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~  277 (304)
T COG3118         198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT  277 (304)
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence                                          2256899999999999999999999999999988888765  36678888


Q ss_pred             HHHHHHHHH
Q 018089          338 LAVAKKKIH  346 (361)
Q Consensus       338 l~~~~~~~~  346 (361)
                      |-++-..+.
T Consensus       278 lle~f~~~g  286 (304)
T COG3118         278 LLELFEAFG  286 (304)
T ss_pred             HHHHHHhcC
Confidence            888777766

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.20  E-value=0.0096  Score=50.36  Aligned_cols=115  Identities=27%  Similarity=0.239  Sum_probs=63.6

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA-CKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~~l~~~~~Ai~~~~~al  291 (361)
                      ..+...|......+++..|++.+.+++...                  +.........+. ++..+++++.|+..+.+++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (291)
T COG0457          96 EALLNLGLLLEALGKYEEALELLEKALALD------------------PDPDLAEALLALGALYELGDYEEALELYEKAL  157 (291)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------------------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344445555555555666666666665411                  111112222222 6666677777777777766


Q ss_pred             hcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHH
Q 018089          292 RDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAVAKKKI  345 (361)
Q Consensus       292 ~~~p---~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~~~~~~  345 (361)
                      ..+|   .....++.++..+...++++.|+..+.++++..+. .......+.......
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence            6555   34555555555566666777777777777766666 345555554444433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.17  E-value=0.0014  Score=43.33  Aligned_cols=42  Identities=17%  Similarity=0.055  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~  306 (361)
                      .+++.+|..+.++|+|.+|..+++.+|+++|+|..|..-...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            467899999999999999999999999999999887655443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.14  E-value=0.0041  Score=60.98  Aligned_cols=105  Identities=17%  Similarity=0.178  Sum_probs=85.2

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      +.+--+...|..+..+|+.++|++.|++++..-              ....+....++..++.|++-+.+|++|..++.+
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~  330 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQ--------------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR  330 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--------------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence            345567778999999999999999999998611              124556678899999999999999999999999


Q ss_pred             HhhcCCCchhHHHH--HHHHHHhcCCH-------HHHHHHHHHHHhhCC
Q 018089          290 AMRDGDDNVKALFR--QGQAYMALNDV-------DAAVESFEKALKLEP  329 (361)
Q Consensus       290 al~~~p~~~ka~~~--~g~~~~~~~~~-------~~A~~~~~~a~~l~p  329 (361)
                      .+..+. +++++|.  .|.|+.++++.       ++|.+.|+++..+-.
T Consensus       331 L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  331 LLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            999774 4555544  68889999999       888888888876643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.12  E-value=0.0026  Score=57.13  Aligned_cols=76  Identities=22%  Similarity=0.197  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  340 (361)
                      .+-.+.|.-..+.|+.++|...+..|+.++|+++.++.++|+.....++.-+|-.+|-+|+.++|.|.+++.+...
T Consensus       117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3345556666789999999999999999999999999999999999999999999999999999999988777655

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.10  E-value=0.00093  Score=39.21  Aligned_cols=31  Identities=39%  Similarity=0.702  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       300 a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      |++++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5677777777777777777777777777665

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.06  E-value=0.014  Score=49.37  Aligned_cols=108  Identities=30%  Similarity=0.357  Sum_probs=85.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-chh
Q 018089          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVK  299 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~-~~k  299 (361)
                      .++..++++.|+..|.+++...+.               .......+..++..+...++++.|+..+.+++...+. ...
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  203 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE---------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE  203 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH
Confidence            788999999999999999771110               0134455566666688889999999999999999998 799


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       300 a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      ++..++.++...+++++|+..+.+++...|........+.....
T Consensus       204 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            99999999999999999999999999999874444444444333

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.02  E-value=0.002  Score=62.49  Aligned_cols=108  Identities=20%  Similarity=0.215  Sum_probs=92.6

Q ss_pred             ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 018089          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (361)
Q Consensus       219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~  298 (361)
                      |...-..|+-..|+.+...|+...+               .  .......|+|.+.++-+-...|-..+.++|.+.-..+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p---------------~--~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep  676 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAP---------------L--QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP  676 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccCh---------------h--hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc
Confidence            4444457888889999999998332               1  2234578999999999999999999999999997788


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      -.+|.+|.+|..+.+.+.|++.|+.|++++|+++.+...|..+..
T Consensus       677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            899999999999999999999999999999999999988888776

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.99  E-value=0.00099  Score=63.29  Aligned_cols=82  Identities=16%  Similarity=0.041  Sum_probs=67.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       269 nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      +-|.-.++-+.|+.|+..|.+||+++|+++..+-+++.++...++|..|+.++.+|++++|...-++...+.+.-.+.+.
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            44556678899999999999999999999999999999999999999999999999999998665544444444444444


Q ss_pred             HH
Q 018089          349 RE  350 (361)
Q Consensus       349 ~~  350 (361)
                      ++
T Consensus        89 ~~   90 (476)
T KOG0376|consen   89 KK   90 (476)
T ss_pred             HH
Confidence            43

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.95  E-value=0.0055  Score=63.41  Aligned_cols=64  Identities=11%  Similarity=0.020  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      ...|..+...+...|+++.|...+++++.+.|++...|..+..+|...|++++|.+.+++..+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3457888888888999999999999999999998889999999999999999999998887654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.95  E-value=0.00031  Score=63.85  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +..|.++.||+.|..||.++|.....|-.++.++..++....|+++|..|++++|+...-+...+.++..+..+.++.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            457889999999999999999999999999999999999999999999999999998777777777777777665543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.94  E-value=0.0037  Score=57.44  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=89.3

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      ......+.|.|++++.+--..|..+...            ........++.|++..+.++.++.+++.++...+.+....
T Consensus        49 l~~a~s~~g~y~~mL~~a~sqi~~a~~~------------~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~  116 (518)
T KOG1941|consen   49 LVTAHSEMGRYKEMLKFAVSQIDTAREL------------EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTR  116 (518)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC
Confidence            3444455566665555443333322211            1334566889999999999999999999999999876444


Q ss_pred             -----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHH
Q 018089          298 -----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG------GIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       298 -----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~~~~~~~~  351 (361)
                           ..++..+|.++..++.++++++.|++|++..-++.      .+...|+++...+++.+++
T Consensus       117 ~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Ka  181 (518)
T KOG1941|consen  117 AGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKA  181 (518)
T ss_pred             cccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHH
Confidence                 36778899999999999999999999999865433      4677788888888877665

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.016  Score=52.13  Aligned_cols=121  Identities=17%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF----  289 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~----  289 (361)
                      .+..+|-.++...+|..|..+|++.-.                  +.|........-|+..++.+.+..|+.....    
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~q------------------l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~  107 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQ------------------LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN  107 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence            456689999999999999999999876                  3444444444445544555554444432221    


Q ss_pred             ------------Hh--------------hcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          290 ------------AM--------------RDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       290 ------------al--------------~~~p--~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                                  ||              +.-|  ..+....+.|.+.++.|+|++|++-|+.|++...-++.+..+++.+
T Consensus       108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa  187 (459)
T KOG4340|consen  108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA  187 (459)
T ss_pred             HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH
Confidence                        22              1112  3456667777777777888888888888888777777777777777


Q ss_pred             HHHHHHHHHHH
Q 018089          342 KKKIHERREQE  352 (361)
Q Consensus       342 ~~~~~~~~~~~  352 (361)
                      .-..+++..+-
T Consensus       188 Hy~~~qyasAL  198 (459)
T KOG4340|consen  188 HYSSRQYASAL  198 (459)
T ss_pred             HHhhhhHHHHH
Confidence            76666655543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.93  E-value=0.0072  Score=53.31  Aligned_cols=71  Identities=17%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      -+.-+++-|...++-|+|.+|+..++.+....|.+   .++..-++.+++..++|++|+...++.+++.|.++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n  106 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN  106 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence            34568889999999999999999999999988754   689999999999999999999999999999998764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.93  E-value=0.00067  Score=41.10  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=11.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          301 LFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      |.++|.+|..+|+|++|+..|+++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444555555555555555555553

>smart00028 TPR Tetratricopeptide repeats

Probab=96.92  E-value=0.0017  Score=37.02  Aligned_cols=31  Identities=55%  Similarity=0.927  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       300 a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      +++++|.++..++++++|+..|+++++++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555666666666666666666666655553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.89  E-value=0.0019  Score=39.11  Aligned_cols=29  Identities=21%  Similarity=0.105  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +|.++|.+|.++|+|++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999977554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.024  Score=50.21  Aligned_cols=77  Identities=18%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             HHHHHHhc----CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          270 SSACKLKL----GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       270 la~~~~~l----~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      ||..+.++    +++..|.-.|++.-..-|..+..+...+.|++.+++|++|...++.++.-++++++.+.++--+...+
T Consensus       175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~  254 (299)
T KOG3081|consen  175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHL  254 (299)
T ss_pred             HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence            44444443    45788888888888867778888888888888888888888888888888888888888777665554


Q ss_pred             H
Q 018089          346 H  346 (361)
Q Consensus       346 ~  346 (361)
                      +
T Consensus       255 G  255 (299)
T KOG3081|consen  255 G  255 (299)
T ss_pred             C
Confidence            4

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.88  E-value=0.0023  Score=60.86  Aligned_cols=82  Identities=17%  Similarity=0.129  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------cCC---------CchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR---------DGD---------DNVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~---------~~p---------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      ....|+|+|.++++++.|.-++.++.+||+         +.|         .+...+|+.|..|...|+.-.|-++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            455679999999999999999999999995         112         23678999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHH
Q 018089          325 LKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       325 ~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .+.--.|+.+|..|+++--.
T Consensus       362 v~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHH
Confidence            99998999999999987543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.011  Score=53.12  Aligned_cols=85  Identities=12%  Similarity=-0.043  Sum_probs=75.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHH
Q 018089          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~  301 (361)
                      +.+..+|..|+++...-.+                  .+|.....+..+|.||+...+|..|..+|++...+.|...+..
T Consensus        20 lI~d~ry~DaI~~l~s~~E------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr   81 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELE------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR   81 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence            4678899999999888777                  6777778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q 018089          302 FRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       302 ~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      +..|+.++..+.+.+|++.....
T Consensus        82 lY~AQSLY~A~i~ADALrV~~~~  104 (459)
T KOG4340|consen   82 LYQAQSLYKACIYADALRVAFLL  104 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHh
Confidence            99999999999999999876543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.81  E-value=0.0088  Score=49.90  Aligned_cols=69  Identities=25%  Similarity=0.261  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALND----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       280 ~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~----------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      |+.|.+.++.....+|.++.++++=|.++..+.+          +++|+.-|++|+.++|+...+...++.+.-.+...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            7889999999999999999999999999988754          46889999999999999999999999887776653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.78  E-value=0.022  Score=48.20  Aligned_cols=101  Identities=21%  Similarity=0.176  Sum_probs=79.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .-..+..+|+.+.+.|+++.|++.|.++..+..               .......++.++-.+.+..++|..+..+..+|
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---------------~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCT---------------SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            346678899999999999999999999988553               34467788899999999999999999999888


Q ss_pred             hhcCCC--c----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          291 MRDGDD--N----VKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       291 l~~~p~--~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      -.+-..  +    .+.....|..++..++|..|...|-.+..
T Consensus       100 ~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  100 ESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            865322  2    22334457778888999999988866543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.77  E-value=0.002  Score=37.70  Aligned_cols=32  Identities=22%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      +++++|.|+.++|++++|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67899999999999999999999999999974

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.72  E-value=0.016  Score=53.00  Aligned_cols=117  Identities=15%  Similarity=0.132  Sum_probs=90.5

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhc
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMRD  293 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al~~  293 (361)
                      |....+.+-+.+..+.|-..|.+|+.                  .......+|...|...++ .++.+.|...++.+++.
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~------------------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~   65 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARK------------------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK   65 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHc------------------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            34455666777789999999999976                  333455678888888666 56777799999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERR  349 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~  349 (361)
                      -|.+...|.....-+..+++.+.|...|++++..-|.+.   .+|....+-+...++..
T Consensus        66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~  124 (280)
T PF05843_consen   66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE  124 (280)
T ss_dssp             HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred             CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999877655   57777777666665443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.70  E-value=0.05  Score=51.98  Aligned_cols=124  Identities=11%  Similarity=0.093  Sum_probs=102.3

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +...|.---.++++..|-+.|++||.                  .+..+..+|...+.+-++.+....|....++|+.+=
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l  137 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL  137 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence            33445555578889999999999998                  777889999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK  358 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  358 (361)
                      |.--+.||..-..-..+|+...|.+.|++=++..|+ ..+|...-.-+.+.++.+.+ +.-|.+
T Consensus       138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeiera-R~IYer  199 (677)
T KOG1915|consen  138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERA-RSIYER  199 (677)
T ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence            999999999999999999999999999999999995 44666666665555555443 333443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.69  E-value=0.018  Score=55.23  Aligned_cols=57  Identities=18%  Similarity=0.158  Sum_probs=29.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          268 TNSSACKLKLGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      ..+|.|..++|+.++|++.+...++..|.  +...++++..++..++.|.++.+.+.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            44555555555555555555555544432  3345555555555555555555555554

The molecular function of this protein is uncertain.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.017  Score=52.62  Aligned_cols=100  Identities=21%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +--+.+.+-..+--|+|..|++--.+|+.                  ++|....+++.-|.|++.++.+.+|+.+|+..+
T Consensus       119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~------------------~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  119 AVLYTNRAAAQLYLGNYRSALNDCSAALK------------------LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHh------------------cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            44566777777888999999999999999                  999999999999999999999999999999997


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      .++..                    |....+-+-.++|+++..+...+.++++..+.+
T Consensus       181 ~~d~e--------------------~K~~~~l~~l~~k~~~~~L~~er~~rK~~~e~k  218 (390)
T KOG0551|consen  181 QIDDE--------------------AKKAIELRNLIHKNDKLKLIEERDVRKKNAEEK  218 (390)
T ss_pred             hhhHH--------------------HHHHHHHHhhcCcchHHHHHHHHHHHHHhHHHH
Confidence            66632                    222222222356777766666666655544433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.033  Score=50.95  Aligned_cols=127  Identities=13%  Similarity=0.002  Sum_probs=91.9

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      +.....+..++.+|++.+|...+.+.|.                  ..|.+..++...-.+++.+|+...-....++++-
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~------------------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip  165 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLD------------------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP  165 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHH------------------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence            4455567778889999999999999998                  6666666666666677778888888888888886


Q ss_pred             c-CCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089          293 D-GDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       293 ~-~p~~~k---a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      . +|+-+-   ..--.+-++.+.|-|++|.+.-++++++||.|.-+.-.++-+.+...+.++..+.+|+
T Consensus       166 ~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  166 KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             ccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            6 554432   2223455677788888888888888888888876666666666666666666666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.64  E-value=0.035  Score=59.21  Aligned_cols=102  Identities=18%  Similarity=0.076  Sum_probs=70.3

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      ....|..+...|++++|...+.+++.......            .......++.++|.+++.+|++++|...+++++.+.
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHD------------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            34456666667777777777777776432110            011223466888999999999999999999988752


Q ss_pred             CC--------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          295 DD--------NVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       295 p~--------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      ..        ..-.+..+|.++...|++++|...+.+++.+.
T Consensus       562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            21        12345567888888999999999999888764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.63  E-value=0.072  Score=43.26  Aligned_cols=84  Identities=24%  Similarity=0.241  Sum_probs=63.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc----------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018089          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDAAVESFEKAL  325 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~~----------------------~ka~~~~g~~~~~~~~~~~A~~~~~~a~  325 (361)
                      ...|......++...++..+.+++.+....                      ..++.+++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            334555566788889999999999664211                      4577778888999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          326 KLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       326 ~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .++|.+..++..+-.+....++...+
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A  115 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEA  115 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            99999999999999988888876665

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.63  E-value=0.0029  Score=35.93  Aligned_cols=33  Identities=33%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      .++.++|.++..++++++|+.++++++.++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.61  E-value=0.026  Score=54.22  Aligned_cols=57  Identities=23%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      .-+..|+|.|..++|+.++|++.++..++..|.  +..++.+|-++...++.+.+.++-
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence            566788999999999999999999999998886  567888888888887777666543

The molecular function of this protein is uncertain.

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.61  E-value=0.034  Score=59.83  Aligned_cols=96  Identities=10%  Similarity=-0.006  Sum_probs=45.9

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--  292 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~--  292 (361)
                      +..+...|.+.|++++|++.|.+..+.-                ..| +...|+.+-.+|.+.|++++|.+.+++...  
T Consensus       510 ynaLI~gy~k~G~~eeAl~lf~~M~~~G----------------v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~  572 (1060)
T PLN03218        510 FGALIDGCARAGQVAKAFGAYGIMRSKN----------------VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAET  572 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcC----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            3344455666666666666666554300                111 123344444455555555555555554443  


Q ss_pred             --cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          293 --DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       293 --~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                        +.| +...|..+..+|...|++++|.+.|+++.+.+
T Consensus       573 ~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        573 HPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             CCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence              122 23344444444555555555555555554443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.59  E-value=0.037  Score=52.78  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=89.0

Q ss_pred             HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHH
Q 018089          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~  303 (361)
                      ...+.+.+.+.|+.+|.++|+.              .=..+.+|+..|...+++.+...|...+..||-..|.+ |.+-.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHk--------------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~  442 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHK--------------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKG  442 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcc--------------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHH
Confidence            4678889999999999988754              33566788888888888888899988888888888743 33333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       304 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .-..-..+++++.....|++.++..|+|-.+|...++++..+.+..++
T Consensus       443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa  490 (677)
T KOG1915|consen  443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA  490 (677)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence            334455778888888889999998898888888888888888877664

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.02  Score=55.79  Aligned_cols=131  Identities=17%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc---------cCCCCccchhh---HHH---HHHHHHHHHHHHHHhc
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGKSSS---LRK---TKSQIFTNSSACKLKL  277 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~---------~~~~~~~~~~~---~~~---~~~~~~~nla~~~~~l  277 (361)
                      +.++..-|.+-+.++|++|+..-.+.+...+.-..         .+..-.++...   .++   ......+-.|-|.+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            44555566666777777777777776664321000         00000000000   111   1111225788899999


Q ss_pred             CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHH
Q 018089          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKIH  346 (361)
Q Consensus       278 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~  346 (361)
                      +..++|+..++   -+++...+.+.-+|++++.+++|++|.+.|+...+-+..+  .....++..+...+.
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~  160 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ  160 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence            99999999988   6777778899999999999999999999999988766543  344555544444333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.044  Score=48.51  Aligned_cols=122  Identities=13%  Similarity=0.244  Sum_probs=95.0

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh--
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM--  291 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al--  291 (361)
                      -.+...+.+.-.|.|.-.+..|.+.++.                 ..+..+.+...++.+.++.|+.+.|..+++.+-  
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----------------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~  241 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-----------------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV  241 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHh-----------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            3456788888899999999999999881                 236677888999999999999999999999443  


Q ss_pred             --hcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          292 --RDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       292 --~~~p--~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                        .++.  .+.-...+.+.+|...++|.+|...|.++++.||.++.+..+-+.|.-=+++...+-
T Consensus       242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi  306 (366)
T KOG2796|consen  242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL  306 (366)
T ss_pred             HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence              3332  345677788888999999999999999999999998876666555555444444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.56  E-value=0.014  Score=43.35  Aligned_cols=67  Identities=15%  Similarity=0.212  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHH
Q 018089          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKIHERR  349 (361)
Q Consensus       283 Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~~  349 (361)
                      .+..++++++.+|++..+.+.+|.++...|++++|++.+-.+++.++..  ..+++.+-.+-..+....
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            4667889999999999999999999999999999999999999998864  678888888877777543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.55  E-value=0.044  Score=58.43  Aligned_cols=100  Identities=20%  Similarity=0.112  Sum_probs=79.0

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      ...|..++..|+++.|...++++++..+..             .......+..++|.++..+|++++|...+.+++....
T Consensus       456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~  522 (903)
T PRK04841        456 ALRAQVAINDGDPEEAERLAELALAELPLT-------------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR  522 (903)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            345777888999999999999998732210             1222345678899999999999999999999997643


Q ss_pred             Cc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          296 DN------VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       296 ~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      ..      ..++..+|.++...|++++|...+++++.+.
T Consensus       523 ~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        523 QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            21      3567788999999999999999999998863

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.55  E-value=0.049  Score=52.30  Aligned_cols=101  Identities=13%  Similarity=0.058  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 018089          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA  307 (361)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~  307 (361)
                      -..-...|+.|+.                  .-+.++.+|.+-..-+.+.+.+.+--..|.++|..+|+++..|..-|.=
T Consensus        87 ~~rIv~lyr~at~------------------rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w  148 (568)
T KOG2396|consen   87 PNRIVFLYRRATN------------------RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW  148 (568)
T ss_pred             HHHHHHHHHHHHH------------------hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence            3445677888877                  4455788888888887788889999999999999999999999999888


Q ss_pred             HHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          308 YMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       308 ~~~~~~-~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      .+..+. .+.|.+.|.++++.+|+.+.+|...-.++..-.
T Consensus       149 efe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~  188 (568)
T KOG2396|consen  149 EFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA  188 (568)
T ss_pred             HHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence            777775 999999999999999999998887666554433

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.55  E-value=0.039  Score=59.40  Aligned_cols=29  Identities=3%  Similarity=-0.150  Sum_probs=17.2

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALR  240 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~  240 (361)
                      ...+..+-+.+.+.|++++|.+.|.+...
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~  570 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKA  570 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34455566666666666666666665543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.51  E-value=0.0043  Score=53.54  Aligned_cols=61  Identities=26%  Similarity=0.342  Sum_probs=56.2

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      ...+.++.+.|.+.|.+|+++.|.+...|+|+|......|+++.|.+.|++.++++|.+-.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3456789999999999999999999999999999999999999999999999999998643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.45  E-value=0.014  Score=60.42  Aligned_cols=112  Identities=15%  Similarity=-0.054  Sum_probs=59.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhh--hh----------ccccCCCCccch--hhH----HHHHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYL--DI----------CWEKEGIDEGKS--SSL----RKTKSQIFTNSSAC  273 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~--~~----------~~~~~~~~~~~~--~~~----~~~~~~~~~nla~~  273 (361)
                      ...+..+...+.+.|++++|++.|++..+.-  +.          +...........  ...    -+.+..+++.+...
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~  369 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL  369 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence            3456677788888888888888888765410  00          000000000000  000    01122344555555


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       274 ~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      |.+.|++++|...+++..+   .+...|..+..+|...|+.++|++.|++..+
T Consensus       370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIA  419 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666665543   2445666666667777777777777766654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.049  Score=48.60  Aligned_cols=82  Identities=20%  Similarity=0.116  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .......+..|+=..++..++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..++..|+++.+...-
T Consensus       176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            34455667788888899999999999999999999999999999999999999999999999999999999987654443


Q ss_pred             HH
Q 018089          339 AV  340 (361)
Q Consensus       339 ~~  340 (361)
                      ..
T Consensus       256 ~~  257 (269)
T COG2912         256 AQ  257 (269)
T ss_pred             HH
Confidence            33

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.42  E-value=0.059  Score=50.24  Aligned_cols=113  Identities=21%  Similarity=0.182  Sum_probs=78.0

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      ...+..+...|++++|.+....+++--                .++.   ++.-  .-..+.+++..=++..++.+...|
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~----------------~D~~---L~~~--~~~l~~~d~~~l~k~~e~~l~~h~  325 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKRQ----------------WDPR---LCRL--IPRLRPGDPEPLIKAAEKWLKQHP  325 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhc----------------cChh---HHHH--HhhcCCCCchHHHHHHHHHHHhCC
Confidence            345666778899999999999998711                1121   1111  223466788888888888888888


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +++..++.+|..++..+.|.+|..+|+.|++.-|+ ...+..++.+...+.+-.+
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~  379 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEE  379 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHH
Confidence            88888888888888888888888888888887764 3455556666555554433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.025  Score=49.47  Aligned_cols=82  Identities=16%  Similarity=0.092  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHh------------------hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAM------------------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al------------------~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      ...++...|.-++++|+|.+|...|..||                  +++......+.+.++|+...++|-++++.....
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            34567778888899999999999999998                  223334668999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHH
Q 018089          325 LKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       325 ~~l~p~~~~~~~~l~~~~~~  344 (361)
                      ++.+|.|..++...+++...
T Consensus       257 L~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHh
Confidence            99999998777766665543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=0.046  Score=47.88  Aligned_cols=130  Identities=12%  Similarity=0.082  Sum_probs=86.7

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--  293 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~--  293 (361)
                      ...+-.+.+..+.+.|+..|++++.++..-            .....-...+...+.++.+++.|.+|-..+.+-...  
T Consensus       114 leKAak~lenv~Pd~AlqlYqralavve~~------------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~  181 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQRALAVVEED------------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD  181 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhcc------------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence            344555566778888899999988876422            134455677888888999999999998777665432  


Q ss_pred             ----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018089          294 ----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       294 ----~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                          -++..+++...-.+|+..++|..|...++....+..-+.  ...-+.++..+.-+.+.+-..++++
T Consensus       182 ~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~--sed~r~lenLL~ayd~gD~E~~~kv  249 (308)
T KOG1585|consen  182 KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK--SEDSRSLENLLTAYDEGDIEEIKKV  249 (308)
T ss_pred             HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC--hHHHHHHHHHHHHhccCCHHHHHHH
Confidence                244567777777788888899999999999877654321  1222334444555555544444444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.26  E-value=0.45  Score=43.34  Aligned_cols=122  Identities=11%  Similarity=0.055  Sum_probs=88.3

Q ss_pred             CchhHHHHhhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHH
Q 018089          203 NELSWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (361)
Q Consensus       203 ~~~~~~~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (361)
                      .++......+..+++.|..+++++ +|+.|+...++|++++...    ................++..++.+|+..+.++
T Consensus        26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~----~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~  101 (278)
T PF08631_consen   26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP----GKMDKLSPDGSELRLSILRLLANAYLEWDTYE  101 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh----hhccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence            355666778999999999999999 9999999999999987542    11122223366778889999999999988765


Q ss_pred             HHHHHHHHHh----hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          282 GALLDTEFAM----RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       282 ~Ai~~~~~al----~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      .... |.+++    .-.|+.+..++-.=.+....++.+++.+.+.+++.--+
T Consensus       102 ~~~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  102 SVEK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            4333 44444    34566666664444445557889999998888887654

It is also involved in sporulation [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.23  E-value=0.13  Score=43.41  Aligned_cols=112  Identities=18%  Similarity=0.092  Sum_probs=82.2

Q ss_pred             ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCc
Q 018089          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR-DGDDN  297 (361)
Q Consensus       219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~-~~p~~  297 (361)
                      +..+..+=+.+.++..-.+.++..                  |. ..-.+.+|....++|++.+|...|++++. +-.++
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~A------------------pT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d  123 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIA------------------PT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD  123 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhc------------------hh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC
Confidence            344444445555555555555522                  22 23367889999999999999999999997 56788


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHH
Q 018089          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~~~  349 (361)
                      ...+..++++.+..+++..|...+++..+.+|.  .+.-...++......+...
T Consensus       124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a  177 (251)
T COG4700         124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA  177 (251)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence            999999999999999999999999999999985  3444555555544444333

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.20  E-value=0.026  Score=43.23  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHhhc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK----LKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l~~~~~Ai~~~~~al~~  293 (361)
                      .+..++.+|++-+|++..+..+..-.       .....+ -+......++..+|..-    .+.--.-.+++.+.++..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~-------~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHG-------EDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHcc-------CCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence            46678999999999999999987211       000000 12333333444443321    1111245688999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      .|..+..+|.+|.=+-....|+++..-.++++.+.
T Consensus        74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            99999999998887777778888888888887653

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.05  E-value=0.03  Score=53.68  Aligned_cols=103  Identities=24%  Similarity=0.397  Sum_probs=68.8

Q ss_pred             eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCcC
Q 018089           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFE   97 (361)
Q Consensus        18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~   97 (361)
                      -.+.+||.+. +|.++++|+.+.+.+           .+      +|-.         ...+-.+..+.-|...+.||..
T Consensus       201 Ty~evE~~~~-~p~s~EH~la~~~~G-----------~~------~Vd~---------~tsTfi~d~~L~g~~~p~En~~  253 (503)
T TIGR03268       201 TYVEVELDPN-APVSVEHFLALMEDG-----------TF------RVDY---------RTSTFISDDSLRGLDKPEENIE  253 (503)
T ss_pred             EEEEEEEcCC-CChhHHHHHHHHhCC-----------eE------EEee---------eecceEecccccCccCCccccC
Confidence            4677888777 899999999998865           11      1110         0011111223346666677664


Q ss_pred             CCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhc
Q 018089           98 LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~  152 (361)
                        ..++|+|.+.+.|..  ....||...+.|. .-.|+|+|+|+.|+|+++-...
T Consensus       254 --~R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       254 --KRRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             --cccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence              346899999998854  5568887766552 2359999999999999986544

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PLN03077 Protein ECB2; Provisional

Probab=95.98  E-value=0.064  Score=56.99  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=81.2

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHh--hh----------hccccCCCCccc--hhhHH-----HHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRY--LD----------ICWEKEGIDEGK--SSSLR-----KTKSQIFTNSSA  272 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~--~~----------~~~~~~~~~~~~--~~~~~-----~~~~~~~~nla~  272 (361)
                      ...|..+...+.+.|+.++|++.|++..+.  .|          .+.......+..  ...+.     .-+...|..+..
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            455788888888999999999999887651  00          000000000000  00000     012245666666


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ++.+.|++++|.+.+++. .+.|+ ...|..+-.++...++.+.|....+++++++|++...+..|..+....++.++.
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a  710 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV  710 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence            677777777777666654 24443 445555555666667777777777777788888877777777776665555443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.067  Score=47.45  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHH-HHHHHHHhhCCCCHHH
Q 018089          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV-ESFEKALKLEPNDGGI  334 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~-~~~~~a~~l~p~~~~~  334 (361)
                      +..+.+.+..|.|++.+++|++|....+.||..++.++..+.++-.+-..+|.-.++. +.+.+....+|.++-+
T Consensus       204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            3455678899999999999999999999999999999999999999999999877666 4666667778877654

>PRK00969 hypothetical protein; Provisional

Probab=95.92  E-value=0.034  Score=53.49  Aligned_cols=103  Identities=26%  Similarity=0.412  Sum_probs=69.3

Q ss_pred             eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCcC
Q 018089           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFE   97 (361)
Q Consensus        18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~   97 (361)
                      -.+.+||..+ +|.++++|+.+.+.+           .|      +|-.         ...+-.+..+.-|...+.||+.
T Consensus       204 Ty~eve~~~~-~p~s~EH~la~~~~G-----------~f------~Vd~---------~tstfI~d~~L~g~~~p~En~~  256 (508)
T PRK00969        204 TYVEVELDPG-APKSVEHFLALLEDG-----------TF------EVDF---------ETSTFIADDRLQGLKIPEENFE  256 (508)
T ss_pred             EEEEEEEcCC-CCchHHHHHHHHhCC-----------eE------EEee---------eecceEeeccccCccCCccccC
Confidence            4677888777 899999999999865           11      1110         0011111223346666777764


Q ss_pred             CCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhc
Q 018089           98 LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~  152 (361)
                        ..++|+|.+.+.|.+  ....||...+.|. .-.|+|+|+|..|+|+++-...
T Consensus       257 --~R~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        257 --PRRRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             --ccccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence              346899999998854  5568888776552 2359999999999999885544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.86  E-value=0.12  Score=55.47  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      .....|...|...+++++-+.|.....+||..-|.  ..+.....|+.-+..|+-+.+...|+-.+.-.|.-.+.|..+.
T Consensus      1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence            45667777777777777777788888888877776  5677777777777888888888888877777777777777666


Q ss_pred             HHHHH
Q 018089          340 VAKKK  344 (361)
Q Consensus       340 ~~~~~  344 (361)
                      ....+
T Consensus      1642 d~eik 1646 (1710)
T KOG1070|consen 1642 DMEIK 1646 (1710)
T ss_pred             HHHHc
Confidence            55544

>PLN03077 Protein ECB2; Provisional

Probab=95.81  E-value=0.096  Score=55.66  Aligned_cols=112  Identities=9%  Similarity=-0.022  Sum_probs=81.0

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +..+...+.+.|++++|.+.+++. .                  ..|. ...|..+-..|..-++.+.+....+++++++
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~m-~------------------~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~  687 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINKM-P------------------ITPD-PAVWGALLNACRIHRHVELGELAAQHIFELD  687 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHC-C------------------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence            334455555666666666655542 1                  2222 3455555556677889999999999999999


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------------------CCCCHHHHHHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------------------------EPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------------------------~p~~~~~~~~l~~~~~~~~  346 (361)
                      |+++..|..++.+|...|++++|.+..+...+.                          .|...++...|..+..+++
T Consensus       688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~  765 (857)
T PLN03077        688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK  765 (857)
T ss_pred             CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988777543                          2445567777777766665

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.70  E-value=0.061  Score=52.62  Aligned_cols=124  Identities=16%  Similarity=0.187  Sum_probs=93.0

Q ss_pred             HHhccHHH-HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          216 KVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       216 ~~~G~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      ..++-.|+ -+|+..+|+.+|..|+-+.+..                ..-.+++.+|.++.++|...+|--.+..|+.-.
T Consensus       216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h----------------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  216 HNMASFYWRIKGEPYQAVECAMRALHFSSRH----------------NKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHHHHHHcCChhhhhHHHHHHhhhCCcc----------------cccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            33444444 4789999999999999855421                233567889999999999999988888888888


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK---KELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~---~~l~~~~~~~~~~~~~~k~~  355 (361)
                      |.-..-+|-+++++.++++|......|..+.+..|.-....   ...-.|.+++.+.-+++++.
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~  343 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRS  343 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777799999999999999999999999999999744332   23333445554444444333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.62  E-value=0.13  Score=50.48  Aligned_cols=92  Identities=16%  Similarity=0.080  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc----hhHH
Q 018089          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKAL  301 (361)
Q Consensus       226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~----~ka~  301 (361)
                      ...+.|.+.......                  .-|.........|.++...|+.++|++.+++++......    .-.+
T Consensus       247 ~~~~~a~~lL~~~~~------------------~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~  308 (468)
T PF10300_consen  247 VPLEEAEELLEEMLK------------------RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY  308 (468)
T ss_pred             CCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence            344555666666655                  667888889999999999999999999999999644332    3578


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       302 ~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      +.+|.++..+.+|++|..++.+..+.+.-.+..+
T Consensus       309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y  342 (468)
T PF10300_consen  309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY  342 (468)
T ss_pred             HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence            8999999999999999999999999765444333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.58  E-value=0.02  Score=54.66  Aligned_cols=100  Identities=16%  Similarity=0.051  Sum_probs=76.2

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHH-hhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ....+.++|-++|..+.|..+..+|.+||+ ...-....-.+.. ...-.......+.+|.|..|+..|+.-.|-+++.+
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~-~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~  360 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK-TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK  360 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc-ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence            345568899999999999999999999996 2211111000000 11113445668899999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhc
Q 018089          290 AMRDGDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~  311 (361)
                      +...--.++..|.|+|.|..+.
T Consensus       361 av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  361 AVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHH
Confidence            9999889999999999998763

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=95.56  E-value=0.077  Score=50.96  Aligned_cols=115  Identities=19%  Similarity=0.297  Sum_probs=68.9

Q ss_pred             eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCcC
Q 018089           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFE   97 (361)
Q Consensus        18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~   97 (361)
                      .=|.|+||.+.||+|+..|+++..-....         ---..+|=+.++.++-=|+.          .++..+-+||.+
T Consensus       375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~~---------VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P  435 (503)
T TIGR03268       375 KVIEIELYDDNAPRSVWYFRKFTGLKTKP---------VGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTP  435 (503)
T ss_pred             hEEEEEEcccCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeeEeccCc----------hhccccCCCCCC
Confidence            46889999999999999999986432110         01134555556644443332          234446677776


Q ss_pred             CCCCCceEEEeeeCCCC---CCCcceEee--cCCCC-CCCCCceEEeEEecChHHHHHHhc
Q 018089           98 LKHERKGMLSMANAGPN---TNGSQFFIT--TTRTS-HLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        98 ~~~~~~g~~~~~~~~~~---~~~sqF~i~--~~~~~-~ld~~~~vfG~v~~g~~vl~~i~~  152 (361)
                      -.....|.|+|.|....   ..|=.|-=+  .+|.. .+++++ ++|+|+++++.++++..
T Consensus       436 ~~~V~ag~IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke  495 (503)
T TIGR03268       436 EDKVEAGVIGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE  495 (503)
T ss_pred             CCccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence            66677899998875421   112111110  12222 355544 56999999999877765

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.45  E-value=0.029  Score=50.68  Aligned_cols=79  Identities=16%  Similarity=0.088  Sum_probs=70.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .|......+-.+.+.|+.++|...++-|+.                  +.|..+.++...|...-.-++.-+|=++|-+|
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAla------------------laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A  176 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALA------------------LAPTNPQILIEMGQFREMHNEIVEADQCYVKA  176 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHh------------------cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence            455556677788899999999999999999                  88889999999999988889999999999999


Q ss_pred             hhcCCCchhHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQA  307 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~  307 (361)
                      |.++|.+++|+-+++..
T Consensus       177 LtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  177 LTISPGNSEALVNRART  193 (472)
T ss_pred             eeeCCCchHHHhhhhcc
Confidence            99999999999998753

>PRK10941 hypothetical protein; Provisional

Probab=95.41  E-value=0.081  Score=47.82  Aligned_cols=79  Identities=11%  Similarity=0.099  Sum_probs=68.8

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      .+-+.++=..+.+.++|+.|+.+.+..+.                  +.|.++.-+.-+|.+|.+++.+..|+.+++..+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~------------------l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl  242 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQ------------------FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV  242 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            34456667788999999999999999999                  888888889999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAY  308 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~  308 (361)
                      +..|+.+.+-.-+.++.
T Consensus       243 ~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        243 EQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HhCCCchhHHHHHHHHH
Confidence            99999987766655543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.39  E-value=0.03  Score=34.49  Aligned_cols=29  Identities=21%  Similarity=0.061  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .++.|+|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677777777777777777777777654

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=0.054  Score=50.17  Aligned_cols=104  Identities=26%  Similarity=0.405  Sum_probs=69.3

Q ss_pred             eeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCc
Q 018089           17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF   96 (361)
Q Consensus        17 ~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~   96 (361)
                      .-.+.++|.++ +|+++++|++|.+.++               -  ||--         +.++-.+..+..+.+.+.||+
T Consensus       202 fTy~eve~s~n-sP~saEH~lalmedG~---------------l--ri~~---------~tntfis~~~lq~~~~~~en~  254 (512)
T COG4070         202 FTYFEVELSRN-SPKSAEHFLALMEDGT---------------L--RIDV---------TTNTFISDDTLQEEKVPEENF  254 (512)
T ss_pred             EEEEEEEeCCC-CchhHHHHHHHhhcce---------------E--EEEE---------eccceeeccccccccCChhhh
Confidence            45788899887 8999999999987541               1  2211         111111223344677788888


Q ss_pred             CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhc
Q 018089           97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~  152 (361)
                      .+.  .+|.++..|.|-+  ...-+|.-.+-|. .-.|.|+|+|++|+++++-...
T Consensus       255 d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         255 DLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             hhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            754  4799999988743  4566776654432 1248999999999999875554

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.21  E-value=0.12  Score=38.64  Aligned_cols=65  Identities=18%  Similarity=0.196  Sum_probs=48.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      ..+.++|.+|++.+.+...+........         .......+..++|.++...|++++|+..+++|+++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~---------~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSS---------SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccch---------hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4578999999999999998654221000         1223455678899999999999999999999997754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.14  E-value=0.52  Score=42.99  Aligned_cols=104  Identities=16%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             HHHhccHHHH-hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          215 IKVFGNEHYK-KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       215 ~~~~G~~~~~-~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      +...|..-+. .++.+.|...|+.+++                  .-+.+...|......++++++.+.|...+++++..
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk------------------~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~   99 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLK------------------KFPSDPDFWLEYLDFLIKLNDINNARALFERAISS   99 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHH------------------HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence            3444555445 6777889999999999                  66677788888888999999999999999999987


Q ss_pred             CCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 018089          294 GDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       294 ~p~~~---ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  336 (361)
                      -|...   ..|-+...-=...|+.+......+++.++.|++..+..
T Consensus       100 l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  100 LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            65543   45666666667789999999999999999988655443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.08  E-value=1.2  Score=38.98  Aligned_cols=106  Identities=16%  Similarity=0.123  Sum_probs=75.0

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      +-+..-||.+--.++|..|=..|.+|..+-....            ........|.-.+.||.+ .+.++|+.+++++|+
T Consensus        35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~------------skhDaat~YveA~~cykk-~~~~eAv~cL~~aie  101 (288)
T KOG1586|consen   35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG------------SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIE  101 (288)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC------------CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHH
Confidence            3334445666667889999999988877332110            112345667777777755 499999999999998


Q ss_pred             cCCCc------hhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC
Q 018089          293 DGDDN------VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       293 ~~p~~------~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~  331 (361)
                      +--+-      ++-+..+|.+|..- .++++|+..|+.+-+.-..+
T Consensus       102 Iyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e  147 (288)
T KOG1586|consen  102 IYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE  147 (288)
T ss_pred             HHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence            86443      45566778888764 89999999999998876543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.07  E-value=1.1  Score=40.69  Aligned_cols=106  Identities=16%  Similarity=0.108  Sum_probs=76.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhc----CCC
Q 018089          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRD----GDD  296 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~~----~p~  296 (361)
                      ..++|+++.|..+|.|+-.......          ..........++|.|...++.+ +++.|+.+.++|+++    .+.
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~----------~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLD----------PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCC----------cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence            4678999999999999976442110          1134566788999999999999 999999999999977    321


Q ss_pred             ---c-------hhHHHHHHHHHHhcCCHH---HHHHHHHHHHhhCCCCHHHHHH
Q 018089          297 ---N-------VKALFRQGQAYMALNDVD---AAVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       297 ---~-------~ka~~~~g~~~~~~~~~~---~A~~~~~~a~~l~p~~~~~~~~  337 (361)
                         .       ...+..++.+|...+.++   +|...++.+-.-.|+.+.+...
T Consensus        73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L  126 (278)
T PF08631_consen   73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLL  126 (278)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence               1       457777899999988765   4455555555556776666633

It is also involved in sporulation [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.05  E-value=0.12  Score=36.90  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=53.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+....+.|..+|.+.+.++|+..++++|+-..               ..+....++-.+..+|...|+|.+++.+...=
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---------------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT---------------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778899999999999999999999998332               23456667777888888999999988877655


Q ss_pred             hhc
Q 018089          291 MRD  293 (361)
Q Consensus       291 l~~  293 (361)
                      +.+
T Consensus        70 ~~~   72 (80)
T PF10579_consen   70 LEI   72 (80)
T ss_pred             HHH
Confidence            443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.87  E-value=0.056  Score=33.01  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      .+|.++|.+....++|++|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56788888889999999999999988876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.84  E-value=0.95  Score=39.90  Aligned_cols=54  Identities=17%  Similarity=0.102  Sum_probs=24.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          270 SSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       270 la~~~~~l~~~~~Ai~~~~~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~  323 (361)
                      .|.=.++..+.++|++.|++++.+-...      ...+-..+.++..++.|++|...+.+
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            3333344445555555555555432111      22233334445555555555544443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.84  E-value=0.043  Score=47.57  Aligned_cols=60  Identities=17%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             cHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      ..+.+.++.+.|.+.|.+++.                  +.|....-|..++....+.|+++.|...|.+.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~------------------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALE------------------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhh------------------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            456678999999999999999                  777888999999999999999999999999999999976

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.76  E-value=0.069  Score=32.77  Aligned_cols=30  Identities=33%  Similarity=0.416  Sum_probs=26.3

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          298 VKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      ..++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999876

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.62  E-value=0.33  Score=51.39  Aligned_cols=117  Identities=18%  Similarity=0.153  Sum_probs=84.9

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc----C---CHHHHHHHHHHH
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----G---DLKGALLDTEFA  290 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~---~~~~Ai~~~~~a  290 (361)
                      ..+++...+.|+.|+..|++.-..+|..               ..--.+....|.+.+.+    +   .+.+|+.-+++.
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGR---------------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL  545 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCc---------------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            3567888999999999999987754421               12234556666665543    2   466666666554


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      -. .|.-+--|...|.+|..+|+|++-++.|..|++.-|+++.+-.....+--++.+.-.
T Consensus       546 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (932)
T PRK13184        546 HG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLY  604 (932)
T ss_pred             cC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH
Confidence            32 344566788889999999999999999999999999999888777776666665443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.58  E-value=0.28  Score=44.40  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       258 ~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      .+......++..++..+...++++.+++..++.+..+|-+.++|.++-.+|+..|+...|+..|++..++
T Consensus       147 ~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         147 ALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3567788899999999999999999999999999999999999999999999999999999999998774

>PRK00969 hypothetical protein; Provisional

Probab=94.57  E-value=0.2  Score=48.40  Aligned_cols=114  Identities=18%  Similarity=0.268  Sum_probs=68.3

Q ss_pred             eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCcC
Q 018089           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFE   97 (361)
Q Consensus        18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~   97 (361)
                      .=|.|+||.+.||+|+..|+++..-....         ---..+|=+.++.++-=|+.          .++..+-+||.+
T Consensus       378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~~---------VG~L~v~F~~~d~~lFk~~~----------~~~k~liPEN~P  438 (508)
T PRK00969        378 KLIEIELYDDKAPRTVWYFRKVTGLKTKP---------VGKLPVYFKYEDTYLFKGNI----------EYAKGLLPENTP  438 (508)
T ss_pred             HEEEEEEcCcCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeEEEccCh----------hhccccCCCCCC
Confidence            35889999999999999999986542110         01134555566655553432          234446677776


Q ss_pred             CCCCCceEEEeeeCCCCCC---CcceEee--cCCCC-CCCCCceEEeEEecChHHHHHHhc
Q 018089           98 LKHERKGMLSMANAGPNTN---GSQFFIT--TTRTS-HLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~~---~sqF~i~--~~~~~-~ld~~~~vfG~v~~g~~vl~~i~~  152 (361)
                      -.....|.|+|.|......   |=.|-=.  .+|.. .+++ .-++|+|+ +++-++++..
T Consensus       439 ~~~V~ag~IgvTN~a~k~~G~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe  497 (508)
T PRK00969        439 EDKVKAGEIGVTNMAAKYKGMIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE  497 (508)
T ss_pred             CCccccceEeeechhhhcCceEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence            6667788888876542111   1111100  12222 3555 45679999 8888877665

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.56  E-value=0.28  Score=38.21  Aligned_cols=117  Identities=17%  Similarity=0.146  Sum_probs=76.5

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA--  290 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a--  290 (361)
                      +.+..+|+..++.+++-.|+-+|++|+.+....+.....+   ...+--..+....|+|..+..+|+-+-.+.+++-|  
T Consensus         2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~e---l~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE   78 (140)
T PF10952_consen    2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIE---LEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE   78 (140)
T ss_pred             hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccccccc---HHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence            3567789999999999999999999999876653222211   12244456677899999999999999999888654  


Q ss_pred             --hhcCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          291 --MRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       291 --l~~~p~~~ka~~~~g~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                        +.+-|..+..-   ..+ ...+|.=..|+-+|   ++..| |+.+...+.
T Consensus        79 ~VltLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq  123 (140)
T PF10952_consen   79 KVLTLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQ  123 (140)
T ss_pred             HHHHhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHH
Confidence              45666543211   011 12344444555444   55677 455554443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.47  E-value=0.47  Score=51.14  Aligned_cols=86  Identities=15%  Similarity=0.061  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAK  342 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~  342 (361)
                      ..|..|+..|.+-+.+++|.+.++..++.-....+.|...|..++..++-+.|...+.+|++.-|.  +..+....+.++
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            467888899999999999999999999877788999999999999999999999999999999997  667777777776


Q ss_pred             HHHHHHHH
Q 018089          343 KKIHERRE  350 (361)
Q Consensus       343 ~~~~~~~~  350 (361)
                      =+..+.++
T Consensus      1611 Fk~GDaeR 1618 (1710)
T KOG1070|consen 1611 FKYGDAER 1618 (1710)
T ss_pred             hhcCCchh
Confidence            66555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.44  E-value=0.64  Score=38.32  Aligned_cols=87  Identities=15%  Similarity=0.012  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  340 (361)
                      ..-...+..+..+-+..++.+++...++..-.+.|.....-.--|..+...|+|.+|+..|+.+.+-.|..+.+...++.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34445566666677777777777777776667777777777777777777778888887777777777777777777777


Q ss_pred             HHHHHHH
Q 018089          341 AKKKIHE  347 (361)
Q Consensus       341 ~~~~~~~  347 (361)
                      |...+++
T Consensus        87 CL~~~~D   93 (160)
T PF09613_consen   87 CLYALGD   93 (160)
T ss_pred             HHHHcCC
Confidence            7665553

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.44  E-value=0.41  Score=35.51  Aligned_cols=55  Identities=18%  Similarity=0.027  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHhcCC
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALND  313 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~--~ka~~~~g~~~~~~~~  313 (361)
                      .+|.+..+.+.+|.+++..|++++|++.+-.+++.++++  ..+.-.+-.++..+|.
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            889999999999999999999999999999999999877  3333333333444443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.34  E-value=2  Score=35.49  Aligned_cols=112  Identities=13%  Similarity=-0.062  Sum_probs=82.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ...+.+........++.+.+...+.-.--                  +.|....+-.--|..++..|+|.+|+..++.+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrv------------------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRV------------------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45566667777777888888777765433                  788888889999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +-.|..+-+---++.|++.+++.+= ..+-..+++.. .++.+...+..+..
T Consensus        72 ~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~-~d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   72 ERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESG-ADPDARALVRALLA  121 (160)
T ss_pred             ccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcC-CChHHHHHHHHHHH
Confidence            9999888777788899999998641 11222344443 36666666655544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.29  E-value=1.9  Score=41.76  Aligned_cols=100  Identities=18%  Similarity=0.154  Sum_probs=77.8

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+.-+|-....-+.|+.|..++..|++...               ......-+..|+|..|+..++-+.    +-+
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~---------------~~dl~a~~nlnlAi~YL~~~~~ed----~y~  425 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE---------------SIDLQAFCNLNLAISYLRIGDAED----LYK  425 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh---------------HHHHHHHHHHhHHHHHHHhccHHH----HHH
Confidence            3567777888888899999999999999998543               334567788999999999776544    333


Q ss_pred             Hh-hcCCCc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          290 AM-RDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       290 al-~~~p~~----------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      ++ .+.|.+          ..++|-.|.-.+..+++.+|...+.+.++..
T Consensus       426 ~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  426 ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            33 244442          4577888888999999999999999999886

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.27  E-value=0.75  Score=45.76  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .++.|-|.-.++..+|..++++|..-+..-|.+      +|..-.++.||..+.+.+.|.++++.|-+.+|.+.-....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456778888999999999999999999776543      78888899999999999999999999999999987655544


Q ss_pred             HH
Q 018089          339 AV  340 (361)
Q Consensus       339 ~~  340 (361)
                      -.
T Consensus       435 ~~  436 (872)
T KOG4814|consen  435 LQ  436 (872)
T ss_pred             HH
Confidence            43

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.27  E-value=0.32  Score=42.45  Aligned_cols=88  Identities=13%  Similarity=0.030  Sum_probs=58.5

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      -.+..|.-++.+|+......-+..|++.|.+|+..-      ..+.      ..-....+.+.+|.++.++|++++|+.+
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e------~~~~------~~~~~~~l~YLigeL~rrlg~~~eA~~~  187 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE------DFPI------EGMDEATLLYLIGELNRRLGNYDEAKRW  187 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC------cCCC------CCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            334556666666776666667777888888887611      1101      1112345788999999999999999999


Q ss_pred             HHHHhhcCCCch-hHHHHHHH
Q 018089          287 TEFAMRDGDDNV-KALFRQGQ  306 (361)
Q Consensus       287 ~~~al~~~p~~~-ka~~~~g~  306 (361)
                      +.+++.....+. ..+..+|.
T Consensus       188 fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  188 FSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHcCCCCCCcHHHHHHHH
Confidence            999998764333 34444443

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.27  E-value=0.29  Score=46.01  Aligned_cols=114  Identities=21%  Similarity=0.177  Sum_probs=88.4

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..+|..|...|+++.|++.|.++-.|+.               .....+..|.|+=.+-..+++|.....+..+|..
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT---------------s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s  215 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCT---------------SAKHVINMCLNLILVSIYMGNWGHVLSYISKAES  215 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhc---------------chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence            3456778999999999999999999877764               3456678899999999999999999999999987


Q ss_pred             cCC--------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHH
Q 018089          293 DGD--------DNVKALFRQGQAYMALNDVDAAVESFEKALK--------LEPNDGGIKKELAVA  341 (361)
Q Consensus       293 ~~p--------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~--------l~p~~~~~~~~l~~~  341 (361)
                      ...        -.+++...-|.+.+.+++|+.|...+-.+..        +.|.|..++-.|..+
T Consensus       216 t~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL  280 (466)
T KOG0686|consen  216 TPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL  280 (466)
T ss_pred             CchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence            621        1256777778888999999999988866532        235666666666554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.16  E-value=0.31  Score=46.13  Aligned_cols=102  Identities=22%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh---------hc-
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDE-GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---------RD-  293 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al---------~~-  293 (361)
                      ...|.++...|..++....       +.. -......|..+..+..++.++..+|+.+.|.+.+++||         .. 
T Consensus         7 s~~Y~~~q~~F~~~v~~~D-------p~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~   79 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHD-------PNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFS   79 (360)
T ss_pred             CHHHHHHHHHHHHHHHccC-------HHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456666666666665110       000 00113678899999999999999999999999999998         22 


Q ss_pred             ----CCC------------c---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHH
Q 018089          294 ----GDD------------N---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGG  333 (361)
Q Consensus       294 ----~p~------------~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-~~~  333 (361)
                          ++.            |   ..++++....+.+.|.+..|.++.+-.+.+||. |+.
T Consensus        80 ~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen   80 PFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             hhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence                221            1   568999999999999999999999999999998 653

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.79  E-value=0.21  Score=30.09  Aligned_cols=33  Identities=12%  Similarity=0.202  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCCC
Q 018089          299 KALFRQGQAYMALNDVDAAVES--FEKALKLEPND  331 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~--~~~a~~l~p~~  331 (361)
                      +.++.+|..+...|++++|+..  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4567777777788888888887  44677776654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.78  E-value=0.16  Score=46.59  Aligned_cols=95  Identities=11%  Similarity=-0.049  Sum_probs=68.1

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      ++-.-..+|-.|+-..-...+++.+..++.              -.|...-+.--.|.+....|-|++|.+..++|++++
T Consensus       140 ~kfsh~a~fy~G~~~~~k~ai~kIip~wn~--------------dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN  205 (491)
T KOG2610|consen  140 VKFSHDAHFYNGNQIGKKNAIEKIIPKWNA--------------DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN  205 (491)
T ss_pred             hhhhhhHHHhccchhhhhhHHHHhccccCC--------------CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC
Confidence            333445556666666666677776653221              234455566677889999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~  323 (361)
                      |.+.-+...++-++...+++.++.+.+.+
T Consensus       206 ~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  206 RFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            99888888788777777777777766544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.50  E-value=1.1  Score=41.97  Aligned_cols=117  Identities=16%  Similarity=0.096  Sum_probs=79.4

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHH-hhhhccccC-------------C--CCccchhhHHHHHHHHHHHHHHHHHhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEKE-------------G--IDEGKSSSLRKTKSQIFTNSSACKLKL  277 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~-~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~nla~~~~~l  277 (361)
                      ...+.++.+...|+-.+|+...+..+. .+.......             .  ...............++..+|.-...+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            345556667777777788877777766 222110000             0  000001223455667888888888788


Q ss_pred             ------CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhhCCC
Q 018089          278 ------GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV-----------------DAAVESFEKALKLEPN  330 (361)
Q Consensus       278 ------~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~-----------------~~A~~~~~~a~~l~p~  330 (361)
                            +..++++..|.+|+.++|.+.++|+..|..+..+-+.                 ..|+..|-+++.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                  8999999999999999999999999999887765322                 3478888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.19  E-value=0.6  Score=42.11  Aligned_cols=69  Identities=13%  Similarity=0.082  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       258 ~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      .+......++...|..|.+.|.+.+|++.+++++.++|-+...+.-+-.++..+|+-=.|+..|++..+
T Consensus       273 rle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         273 RLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            355566677777888899999999999999999999999999999999999999998788877776543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.13  E-value=0.43  Score=35.63  Aligned_cols=57  Identities=19%  Similarity=0.234  Sum_probs=46.5

Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCC---------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          274 KLKLGDLKGALLDTEFAMRDGDD---------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       274 ~~~l~~~~~Ai~~~~~al~~~p~---------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      .++.++|.+|++.+.+.......         ..-++.++|.++...|++++|+..+++|+++...
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            45789999998888887754321         2467889999999999999999999999998653

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.09  E-value=0.98  Score=45.45  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=78.9

Q ss_pred             HHHhccHHHHh----h-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CHHHHHHH
Q 018089          215 IKVFGNEHYKK----Q-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLD  286 (361)
Q Consensus       215 ~~~~G~~~~~~----g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Ai~~  286 (361)
                      ...+|..+.+.    . ++..|+.+|.++.+                    -..+.+.+++|.|+..-.   ++..|..+
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~--------------------~g~~~a~~~lg~~~~~g~~~~d~~~A~~y  350 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAE--------------------LGNPDAQYLLGVLYETGTKERDYRRAFEY  350 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHh--------------------cCCchHHHHHHHHHHcCCccccHHHHHHH
Confidence            44577777763    3 78899999999966                    234567788999988765   67899999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMAL----NDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~----~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      |..|....  ++.|.+++|.||..=    .+.+.|..+++++.+..  ++.+...+...
T Consensus       351 y~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~  405 (552)
T KOG1550|consen  351 YSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF  405 (552)
T ss_pred             HHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence            99998765  789999999998753    48899999999999987  34444444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.07  E-value=0.48  Score=48.74  Aligned_cols=110  Identities=15%  Similarity=0.057  Sum_probs=79.8

Q ss_pred             HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~  296 (361)
                      -.|-.+++.|++++|..+.+. +..                 ..+.+-..+--+-.||..++++++|...|++++..+|.
T Consensus        48 LkaLsl~r~gk~~ea~~~Le~-~~~-----------------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   48 LKALSLFRLGKGDEALKLLEA-LYG-----------------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHhcCchhHHHHHhh-hcc-----------------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            357788999999999955543 331                 22224445667778999999999999999999999998


Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHH
Q 018089          297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-IKKELAVAKKKI  345 (361)
Q Consensus       297 ~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~-~~~~l~~~~~~~  345 (361)
                       .+.++.+-.+|.+-+.|.+=.+.--+..+..|.++- .|..+..+.+.+
T Consensus       110 -eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen  110 -EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence             899999999999988886555444445557787774 444444444433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.96  E-value=1.7  Score=40.51  Aligned_cols=126  Identities=14%  Similarity=0.168  Sum_probs=96.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...+..+.+.|+++.|.....++..+...              .....+.+..-.|......|+-.+|+...+..
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~--------------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~  210 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPS--------------SESLLPRVFLEYAKLLWAQGEQEEAIQKLREL  210 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc--------------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5667888899999999999999999998763211              11114556677778888889999999888877


Q ss_pred             hhc--C-C-------------------------------CchhHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCC
Q 018089          291 MRD--G-D-------------------------------DNVKALFRQGQAYMAL------NDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       291 l~~--~-p-------------------------------~~~ka~~~~g~~~~~~------~~~~~A~~~~~~a~~l~p~  330 (361)
                      +..  . +                               ..+++++.+|.-...+      +..++++..|+++.+++|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence            761  1 0                               1157788888877777      8999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q 018089          331 DGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       331 ~~~~~~~l~~~~~~~~~~~~  350 (361)
                      ...++..++.....+-+...
T Consensus       291 ~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  291 WEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            98888888887777665554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.95  E-value=0.22  Score=45.28  Aligned_cols=83  Identities=12%  Similarity=0.050  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR-QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~-~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      -+.++.+|...+.-..+.+-|.+.-..|.+++..+|.++..|.. -+--+...++++.+.+.|.++++++|.++.+|...
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            45677788888887788889999999999999999999999877 45567888999999999999999999999888776


Q ss_pred             HHHH
Q 018089          339 AVAK  342 (361)
Q Consensus       339 ~~~~  342 (361)
                      -.++
T Consensus       183 fr~E  186 (435)
T COG5191         183 FRME  186 (435)
T ss_pred             HHHH
Confidence            5544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.79  E-value=5.3  Score=33.68  Aligned_cols=69  Identities=17%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD---NVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~---~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      ......++..+|.-|.+.|++++|++.|.++....-.   -...++++-.+....+++.....++.++-.+-
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3445578999999999999999999999998875432   26788888889999999999999999997764

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.69  E-value=2.6  Score=38.32  Aligned_cols=106  Identities=24%  Similarity=0.195  Sum_probs=78.1

Q ss_pred             hHHHHHhccHHHH----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHH-HHHHHHHHHHHHhc----C---C
Q 018089          212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKL----G---D  279 (361)
Q Consensus       212 a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l----~---~  279 (361)
                      +.....+|..+..    ..++.+|..+|.+|.+                  ..... ..+.++++.+|..-    +   +
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~------------------~g~~~a~~~~~~l~~~~~~g~~~~~~~~~  170 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAK------------------LGNVEAALAMYRLGLAYLSGLQALAVAYD  170 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH------------------cCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence            4456667777776    5599999999999987                  21111 34467777777653    1   2


Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       280 ~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      ...|+..+.+|-...  +..+.+++|.+|..    ..++++|..+|+++.+...  ......++
T Consensus       171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            337889998888877  88999999988855    3489999999999999875  55555555

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.69  E-value=2.3  Score=36.27  Aligned_cols=103  Identities=13%  Similarity=0.164  Sum_probs=69.8

Q ss_pred             ccHHHHhhhH---HHHHHHHHHHHHhhhhccccCCCCccchhhHHH------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          219 GNEHYKKQDY---KMALRKYRKALRYLDICWEKEGIDEGKSSSLRK------TKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       219 G~~~~~~g~y---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      |..++...+-   .+|-..|++++..+....+   ........+..      .-.-.-+-+|..+...+++++|+..++.
T Consensus        38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~---~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~  114 (207)
T COG2976          38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP---KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ  114 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            5555655544   4788889999886643222   11111111111      1223346677788899999999999999


Q ss_pred             HhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          290 AMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       290 al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      ++....+.   .-+-.|+|.+...+|++++|+..++..
T Consensus       115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            99765543   456788999999999999999888653

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=92.65  E-value=0.34  Score=45.09  Aligned_cols=111  Identities=20%  Similarity=0.300  Sum_probs=66.3

Q ss_pred             eEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceE--EeCcCCCCCCCCCCccCCCCCCCCCc
Q 018089           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI--QGGDISAGDGTGGESIYGLKFEDENF   96 (361)
Q Consensus        19 ~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~i--q~G~~~~~~~~~~~~~~~~~~~~e~~   96 (361)
                      -|.||||.+.||+++..|+.+..-.. .+        --...+|=+-++..+  --|+.          .++....+||.
T Consensus       377 iieIELyed~APrSv~yFRr~t~l~~-kp--------VGkL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~  437 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGLKT-KP--------VGKLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENT  437 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhccccc-cc--------ccceEEEEEeCCceEEEEcCCh----------HHhccCCCCCC
Confidence            58899999999999999999875431 11        112356666676322  22322          24555667776


Q ss_pred             CCCCCCceEEEeeeCC-CC--CCC-----cceEeecCCCC-CCCCCceEEeEEecChHHHHHHhc
Q 018089           97 ELKHERKGMLSMANAG-PN--TNG-----SQFFITTTRTS-HLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        97 ~~~~~~~g~~~~~~~~-~~--~~~-----sqF~i~~~~~~-~ld~~~~vfG~v~~g~~vl~~i~~  152 (361)
                      +-....+|.|+..|.. ++  ..|     |.-|   +|.. .+.+ .-++|++++|.+-+..|..
T Consensus       438 P~d~Ve~g~iGvTN~a~r~~GmIGVRL~dsdef---GPTGE~Fe~-TNiIGrIveg~e~l~~ike  498 (512)
T COG4070         438 PADTVEAGEIGVTNQAARHMGMIGVRLEDSDEF---GPTGEKFEG-TNIIGRIVEGPERLIGIKE  498 (512)
T ss_pred             chhheecccccccccchhccceeEEEecccccc---CCCCCcccc-ceeehhhccChHHhccccc
Confidence            6555566666655433 11  111     1111   2221 2333 5578999999999888876

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.56  E-value=4.2  Score=37.87  Aligned_cols=86  Identities=13%  Similarity=0.064  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          259 LRKTKSQIFTNSSACKLKLGD------------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~------------~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      .+|.++.+|..+....-.+-.            .+..+..+++||+.+|++.+.+..+-.+.....+-++..+-+++++.
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            778888888888776555432            45678899999999999999999988888899999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH
Q 018089          327 LEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       327 l~p~~~~~~~~l~~~~~~  344 (361)
                      .+|++..+|..+-.-...
T Consensus        94 ~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   94 KNPGSPELWREYLDFRQS  111 (321)
T ss_pred             HCCCChHHHHHHHHHHHH
Confidence            999998887766554433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.33  E-value=1.5  Score=34.16  Aligned_cols=74  Identities=18%  Similarity=0.068  Sum_probs=56.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +--+--+.-.+...|+|++++..-.++|.|++.....+       +.-....+.+-+++|..+-.+|+.++|+..++.+-
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-------qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-------QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-------STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-------cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            44455667778899999999999999999997654332       12345677788999999999999999999999887


Q ss_pred             h
Q 018089          292 R  292 (361)
Q Consensus       292 ~  292 (361)
                      +
T Consensus       128 E  128 (144)
T PF12968_consen  128 E  128 (144)
T ss_dssp             H
T ss_pred             H
Confidence            5

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.25  E-value=1.4  Score=42.40  Aligned_cols=121  Identities=11%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--CC-----HHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GD-----LKG  282 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~-----~~~  282 (361)
                      +........|-.++..|+|.+|+..|+..|..++-.....   +++..........|...+-.+-+++  +.     .++
T Consensus       202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~---~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~  278 (422)
T PF06957_consen  202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVES---REEEDEAKELIEICREYILGLSIELERRELPKDPVED  278 (422)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence            3344556679999999999999999999999776543332   2222223333333332222222222  22     222


Q ss_pred             HHHHHHHHh-----hcCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          283 ALLDTEFAM-----RDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       283 Ai~~~~~al-----~~~p~~~ka~~~~g~-~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      ..+.++-|.     .+.|.+.-.-.|.|+ ..++.++|..|...-++.+++.|..+.
T Consensus       279 ~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~  335 (422)
T PF06957_consen  279 QKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV  335 (422)
T ss_dssp             HHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence            323333333     445544444455555 356789999999999999999997653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.06  E-value=2.5  Score=40.03  Aligned_cols=111  Identities=16%  Similarity=0.051  Sum_probs=71.4

Q ss_pred             HHhccHHHH---hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh---------cCCHHHH
Q 018089          216 KVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK---------LGDLKGA  283 (361)
Q Consensus       216 ~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---------l~~~~~A  283 (361)
                      ...|..+-+   .|+.++|+..+..++.-                 ..+..+..+.-+|.+|-.         ....++|
T Consensus       183 ~~yafALnRrn~~gdre~Al~il~~~l~~-----------------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkA  245 (374)
T PF13281_consen  183 FQYAFALNRRNKPGDREKALQILLPVLES-----------------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKA  245 (374)
T ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHHhc-----------------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHH
Confidence            345666666   88999999999987651                 222334445555554432         2347788


Q ss_pred             HHHHHHHhhcCCCc---------------------------------------------hhHHHHHHHHHHhcCCHHHHH
Q 018089          284 LLDTEFAMRDGDDN---------------------------------------------VKALFRQGQAYMALNDVDAAV  318 (361)
Q Consensus       284 i~~~~~al~~~p~~---------------------------------------------~ka~~~~g~~~~~~~~~~~A~  318 (361)
                      +.+|.++.+++|+.                                             ...+-.++.+..-.|++++|+
T Consensus       246 i~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~  325 (374)
T PF13281_consen  246 IEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI  325 (374)
T ss_pred             HHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH
Confidence            88888888777653                                             111222444555678999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          319 ESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       319 ~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +.+++++++.|..-.....+..++.
T Consensus       326 ~a~e~~~~l~~~~W~l~St~~ni~L  350 (374)
T PF13281_consen  326 QAAEKAFKLKPPAWELESTLENIKL  350 (374)
T ss_pred             HHHHHHhhcCCcchhHHHHHHHHHH
Confidence            9999999998876655555554433

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.99  E-value=5  Score=35.88  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=91.4

Q ss_pred             HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCchhHHH
Q 018089          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~~~p~~~ka~~  302 (361)
                      +...-..|+..-..+|+                  ++|-+-.+|..|-.|...++ +..+-+++.++.+.-+|.|...|.
T Consensus        55 ~~E~S~RAl~LT~d~i~------------------lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWH  116 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIR------------------LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWH  116 (318)
T ss_pred             ccccCHHHHHHHHHHHH------------------hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHH
Confidence            44555778888888888                  88888888888888887775 788889999999999999999999


Q ss_pred             HHHHHHHhcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          303 RQGQAYMALNDVD-AAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       303 ~~g~~~~~~~~~~-~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .+-.+...+|++. .-++..++++..+..|=.+|+...-+-+..+..+.+
T Consensus       117 HRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E  166 (318)
T KOG0530|consen  117 HRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE  166 (318)
T ss_pred             HHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence            9999999999888 888999999998888878888777777666654443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.85  E-value=0.23  Score=30.34  Aligned_cols=30  Identities=17%  Similarity=0.174  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      .+|..+|.+.+..++|.+|+.++.++|.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.67  E-value=5.7  Score=38.26  Aligned_cols=71  Identities=21%  Similarity=0.296  Sum_probs=55.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHH
Q 018089          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND----GGIKKELAVAKKKI  345 (361)
Q Consensus       271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~----~~~~~~l~~~~~~~  345 (361)
                      |.-.+..|+|.+|.-++.=..+++| ++.++--+|.|++...+|++|-.++.+   +-|++    ..+.+.+..|++-+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~  543 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHL  543 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhh
Confidence            3446678999999999999999999 999999999999999999999998864   44432    23445555554443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.07  E-value=0.83  Score=36.43  Aligned_cols=43  Identities=12%  Similarity=0.113  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG  305 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g  305 (361)
                      .-.+.+.+|..+.++++|++++.+++..|+..|+|..|.--.-
T Consensus        70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4567889999999999999999999999999999987765443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.03  E-value=3.9  Score=41.01  Aligned_cols=118  Identities=8%  Similarity=0.045  Sum_probs=71.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..|.+-|..-.+..+++.|++..++|..........--+..+..+..--....+|...+...-.+|-++.....|++.
T Consensus       424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri  503 (835)
T KOG2047|consen  424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI  503 (835)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            46666777777788889999999888887633211101111122222233345566777777777777777777777777


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      |.+.=-.+....+.|..+.....+++|-+.|++-+.|-
T Consensus       504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF  541 (835)
T KOG2047|consen  504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF  541 (835)
T ss_pred             HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence            76665555666666666655555555555555555554

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=90.99  E-value=1.7  Score=42.86  Aligned_cols=103  Identities=22%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhcCCCchhHHH
Q 018089          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL-LDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai-~~~~~al~~~p~~~ka~~  302 (361)
                      ..++...|+-....++.                  .++..+.++.|++......+....++ .++.-+....|++.....
T Consensus        79 ~~~~~~~~~~~~~~~l~------------------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~  140 (620)
T COG3914          79 PLADSTLAFLAKRIPLS------------------VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG  140 (620)
T ss_pred             ccccchhHHHHHhhhHh------------------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence            34445555555666665                  77888889999999888777655554 455558888898877666


Q ss_pred             HH------HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          303 RQ------GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       303 ~~------g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .+      +.....+++-+++...+.++..+.|.++.+...+....++
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~  188 (620)
T COG3914         141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE  188 (620)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence            65      8888888999999999999999999887776666665333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.90  E-value=5.5  Score=41.23  Aligned_cols=90  Identities=19%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHh----------hcCCC----------chhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          264 SQIFTNSSACKLKLGDLKGALLDTEFAM----------RDGDD----------NVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al----------~~~p~----------~~ka~~~~g~~~~~~~~~~~A~~~~~~  323 (361)
                      -..|+|.|.-+...++.+.|+++|+++=          .-+|.          +.+.|.+-|+-+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3457888888888899999999998764          22332          245666778888899999999999987


Q ss_pred             HHhh---------------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          324 ALKL---------------------EPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       324 a~~l---------------------~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |-..                     ...|..+...|+...+..++..++-+
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~  988 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK  988 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence            7543                     23455566666666665555555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.84  E-value=3.7  Score=38.81  Aligned_cols=96  Identities=18%  Similarity=0.026  Sum_probs=72.0

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+...+....-.|+|+.|.+.|+-.+.                  .-.....-+..|=.-...+|..+.|+.+.+.|-.
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~  182 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAE  182 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            3444556677778999999999998876                  1111111122222334568999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      ..|.-.-++.-.=...+..|+++.|++.++....
T Consensus       183 ~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         183 KAPQLPWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            9999988888888889999999999998876554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.80  E-value=1.5  Score=47.25  Aligned_cols=126  Identities=17%  Similarity=0.159  Sum_probs=95.5

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+....+.|......+.|.+|.+ ..+++.++...          ...+.|....+|..+|..+.+++++++|+..+.+
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v----------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k  998 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV----------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRK  998 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh----------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence            456777888888888899998888 66666655322          1136788899999999999999999999999999


Q ss_pred             Hhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHH
Q 018089          290 AMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       290 al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~~~  346 (361)
                      |.-+        .|+...++.+++...+..++...|+..+.+++++        .|.-..+..++..+...+.
T Consensus       999 a~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen  999 ACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred             ceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHH
Confidence            9844        2455789999999999999999999999998876        3443344445555544333

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.78  E-value=0.98  Score=40.73  Aligned_cols=62  Identities=16%  Similarity=-0.064  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       283 Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      |+.+|.+|+.+.|++-..|..+|.++...++.=+|+-+|-+++-..-..+.+..+|..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999987755568888888887776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=90.77  E-value=4  Score=35.89  Aligned_cols=118  Identities=16%  Similarity=0.164  Sum_probs=68.1

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH-HHH-HHHHHHHhh-cC-CCch
Q 018089          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-KGA-LLDTEFAMR-DG-DDNV  298 (361)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-~~A-i~~~~~al~-~~-p~~~  298 (361)
                      |..|+|+.|++.-.-||+.      .....+.-........+.-...-|....+.|.. +-. ...+..... .+ |+.+
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~------~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~v  167 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEH------GLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEV  167 (230)
T ss_pred             eeccCHHHHHHHHHHHHHc------CCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHH
Confidence            5679999999999999882      111111111123333444445555555666652 111 122222221 11 3444


Q ss_pred             --hHHHHHHHHHH---------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          299 --KALFRQGQAYM---------ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       299 --ka~~~~g~~~~---------~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                        |.|--.|.++.         ..++.+.|+..|++|++++| +..+...+..+..+++.
T Consensus       168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~-k~GVK~~i~~l~~~lr~  226 (230)
T PHA02537        168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND-KCGVKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHhh
Confidence              44444555552         45688899999999999997 45677777777777764

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.70  E-value=4.5  Score=31.15  Aligned_cols=85  Identities=21%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 018089          270 SSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~---ka~~~~g~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      +|.-++..|++-+|++..+..+..++++.   -.+..-|.++..+..           .-.|++.+.++..+.|..+...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56778899999999999999999888766   445556777765432           3478999999999999886666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 018089          336 KELAVAKKKIHERREQEKK  354 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~~~k~  354 (361)
                      ..|+.-.....-+++.-++
T Consensus        82 ~~la~~l~s~~~Ykk~v~k  100 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKK  100 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHH
Confidence            6666654445555554433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.69  E-value=0.39  Score=26.41  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q 018089          300 ALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       300 a~~~~g~~~~~~~~~~~A~~~~~  322 (361)
                      +.+.+|.++..+|++++|.+.++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.29  E-value=4.1  Score=33.17  Aligned_cols=87  Identities=13%  Similarity=-0.070  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      .-...+..+..+.+...+.+++....+..=.+.|.....-.--|..+...|+|.+|+..|+...+-.+.-+..+.+++.|
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            33444555555666677777777766666667788888878888888888888888888888777666667777777777


Q ss_pred             HHHHHHH
Q 018089          342 KKKIHER  348 (361)
Q Consensus       342 ~~~~~~~  348 (361)
                      ...+++-
T Consensus        88 L~al~Dp   94 (153)
T TIGR02561        88 LNAKGDA   94 (153)
T ss_pred             HHhcCCh
Confidence            6666543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=90.08  E-value=1.2  Score=43.38  Aligned_cols=76  Identities=22%  Similarity=0.152  Sum_probs=67.0

Q ss_pred             cCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       277 l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ...+..|+.+|.+++...|+....|.+++.+++..+   +--.|+.+...|++++|....++..|..+...+...+++.
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            445788999999999999999999999999988754   6668999999999999999999999999999988887764

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.98  E-value=1.8  Score=30.95  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhh
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~  244 (361)
                      ..|..+-..|..+=+.|+|.+|+.+|..|++++..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            35667778888889999999999999999998754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=89.74  E-value=1.9  Score=30.02  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=30.3

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      +.|..+...|..+=+.|+|++|+.+|.+|++++...
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   38 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA   38 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            456677778888889999999999999999977644

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=89.66  E-value=18  Score=37.75  Aligned_cols=108  Identities=13%  Similarity=0.037  Sum_probs=82.7

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +.-....+..+....+|.+|-....++...++....         ...........--+|.+....+++++|+..++.++
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~---------~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al  485 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMH---------SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL  485 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcc---------cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            333445577778889999999888888775442200         11333455666778889999999999999999999


Q ss_pred             hcCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          292 RDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       292 ~~~p~~-----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      ..=|.+     .-++...|.+..-.|++++|......+.++.
T Consensus       486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence            876644     5688889999999999999999999988873

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.60  E-value=1.2  Score=28.07  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=20.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          301 LFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      .+.+|.+|..+|+++.|...++..+.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            35678888888888888888888774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.01  E-value=7.5  Score=36.94  Aligned_cols=106  Identities=12%  Similarity=-0.006  Sum_probs=84.4

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCch
Q 018089          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGDDNV  298 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~Ai~~~~~al~~~p~~~  298 (361)
                      ...+...+++-+.+-..+|+                  .+|..-.+|+.|..+..+..  +|..-++.|+++|+.||.|-
T Consensus        84 ~~ek~~~ld~eL~~~~~~L~------------------~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf  145 (421)
T KOG0529|consen   84 PLEKQALLDEELKYVESALK------------------VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF  145 (421)
T ss_pred             HHHHHHhhHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc
Confidence            33445567777888888888                  88999999999999998775  48999999999999999998


Q ss_pred             hHHHHHHHHHHhc-CC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          299 KALFRQGQAYMAL-ND---VDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       299 ka~~~~g~~~~~~-~~---~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .+|..+-.++... ..   ..+-+++..+++.-++.|=.+|-....+...
T Consensus       146 h~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~  195 (421)
T KOG0529|consen  146 HAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLST  195 (421)
T ss_pred             cchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            8876655444433 33   6777889999999999998888877776653

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.66  E-value=0.91  Score=43.36  Aligned_cols=60  Identities=22%  Similarity=0.226  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh--------hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          267 FTNSSACKLKLGDLKGALLDTEFAM--------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Ai~~~~~al--------~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      ...+..++.-+|+|..|++..+..=        +..+.....+|..|-||+++++|.+|++.|...+-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667888999999998765431        22345678999999999999999999999987654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.56  E-value=1.1  Score=40.24  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=63.9

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      ..+.=..+...++++.|+.+-++.+.                  ++|.++.-+.-+|.+|.++|.+.-|+++++..++.-
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~------------------l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~  245 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLD------------------LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC  245 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHh------------------hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence            34445567789999999999999998                  778888888999999999999999999999999999


Q ss_pred             CCchhHHHHHHHH
Q 018089          295 DDNVKALFRQGQA  307 (361)
Q Consensus       295 p~~~ka~~~~g~~  307 (361)
                      |+...+-.-++..
T Consensus       246 P~~~~a~~ir~~l  258 (269)
T COG2912         246 PDDPIAEMIRAQL  258 (269)
T ss_pred             CCchHHHHHHHHH
Confidence            9887776655543

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.52  E-value=4.4  Score=35.25  Aligned_cols=68  Identities=15%  Similarity=0.003  Sum_probs=58.3

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  340 (361)
                      -.++-+..++||...+.-++-.|.+.....-+-+.+.-.|+|++|...++-+-+++|++..-...++.
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~   77 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH   77 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence            34577889999999999999999999998999999999999999999999999999987644444333

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.48  E-value=13  Score=38.04  Aligned_cols=121  Identities=16%  Similarity=0.105  Sum_probs=87.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcc-ccCCCCcc-------chhhHHHHHHHHHHHHHHHHHhcCCHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-EKEGIDEG-------KSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (361)
                      +..+.-.|......+..+.|.+++.++++.+.... ..+.....       ...........+....+.+.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            44455568888888888899999999999887765 11111111       11233445666778888889999999999


Q ss_pred             HHHHHHHhhcC---C------CchhHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCCH
Q 018089          284 LLDTEFAMRDG---D------DNVKALFRQGQAYMALNDVDAAVESFE--------KALKLEPNDG  332 (361)
Q Consensus       284 i~~~~~al~~~---p------~~~ka~~~~g~~~~~~~~~~~A~~~~~--------~a~~l~p~~~  332 (361)
                      ......+....   |      ..+..+|-.|..+...|+.+.|...|.        .+....+.+.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            88888777542   2      247889999999999999999999997        5555555443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.46  E-value=3.9  Score=41.17  Aligned_cols=116  Identities=20%  Similarity=0.053  Sum_probs=83.6

Q ss_pred             hHHHHHhccHHHH-----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-----CHH
Q 018089          212 VDSIKVFGNEHYK-----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK  281 (361)
Q Consensus       212 a~~~~~~G~~~~~-----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~  281 (361)
                      +......|..++.     .++.+.|+.+|+.+.+-....             .......+.+.+|.+|.+-.     ++.
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-------------a~~~~~~a~~~lg~~Y~~g~~~~~~d~~  310 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-------------ATKGLPPAQYGLGRLYLQGLGVEKIDYE  310 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-------------HhhcCCccccHHHHHHhcCCCCccccHH
Confidence            4445556666653     468999999999997621000             11113446788999998843     778


Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .|+..+.+|-.+.  ++.+.+++|.++..-.   ++..|..+|..|.+.  .+..+...++.+...
T Consensus       311 ~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  311 KALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             HHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            8999999998887  7889999999988766   678999999999875  456666666666543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.44  E-value=14  Score=37.76  Aligned_cols=121  Identities=15%  Similarity=0.094  Sum_probs=88.3

Q ss_pred             hhHHHHHhccHHH-HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      .+.....+|..++ ...+++.|..+.+|++.++..            ..+......+..-++.++.+.+... |+..+++
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~  124 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCER------------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDK  124 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence            5778888999998 688999999999999886532            1255556667777899998888887 9999999


Q ss_pred             HhhcCCC----chhHHHHHHHH--HHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Q 018089          290 AMRDGDD----NVKALFRQGQA--YMALNDVDAAVESFEKALKLE--PNDGGIKKELAVAKKK  344 (361)
Q Consensus       290 al~~~p~----~~ka~~~~g~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~  344 (361)
                      +|+.-..    .+.-.+++-.+  +...+++..|++.++....+.  ..++.+...+...+..
T Consensus       125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~  187 (608)
T PF10345_consen  125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEAL  187 (608)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence            9976544    34455555433  223379999999999998876  4666655554444333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.25  E-value=1.4  Score=26.44  Aligned_cols=33  Identities=12%  Similarity=-0.002  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCc
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTE--FAMRDGDDN  297 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~--~al~~~p~~  297 (361)
                      ..+..+|.++..+|++++|+..++  -+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            356788999999999999999944  888887754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.68  E-value=2.4  Score=40.70  Aligned_cols=60  Identities=8%  Similarity=0.050  Sum_probs=51.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .......|..+|.+|+|.++.-+-.-..+                  ..| .+.+|..+|.|.+..++|.+|..++...
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTK------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            45567778889999999999988888877                  666 7789999999999999999998887553

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.55  E-value=2.7  Score=37.53  Aligned_cols=62  Identities=21%  Similarity=0.136  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------chhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD------NVKALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~------~~ka~~~~g~~~~~~~~~~~A~~~~~  322 (361)
                      .....+...+|.-|+++|+|++|+..++.+......      ....+..+..|+..+|+.+..+...-
T Consensus       175 R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l  242 (247)
T PF11817_consen  175 RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL  242 (247)
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            344556677777777788888887777777755321      24666677777777777777665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.40  E-value=4.7  Score=36.66  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=47.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~  323 (361)
                      +.-.+..+++.+|...+..++..+|.+..+...++.||...|+.+.|...|..
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            34456789999999999999999999999999999999999999988877654

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.25  E-value=1.7  Score=39.19  Aligned_cols=62  Identities=19%  Similarity=0.075  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 018089          231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA  310 (361)
Q Consensus       231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~  310 (361)
                      |..+|.+|+.                  +.|.....|+.+|.++...++.=.|+-+|-+++...-....|.-++...+..
T Consensus         1 A~~~Y~~A~~------------------l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIR------------------LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHH------------------H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH------------------hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7889999999                  7888889999999999999999999999999998765568888888887777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.12  E-value=2.1  Score=41.02  Aligned_cols=133  Identities=14%  Similarity=0.156  Sum_probs=77.9

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      +-..+.-.|+|..|++..+-. ++         ..........+-.+..++..|-||+-+++|.+|+..+...|..=-..
T Consensus       128 LlRvh~LLGDY~~Alk~l~~i-dl---------~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLENI-DL---------NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhcc-Cc---------ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344556678888888765432 10         00011112455677889999999999999999999999888432111


Q ss_pred             hhHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH-HHHHHHHHHHHHHHHHhhhc
Q 018089          298 VKALFRQGQAY-MALNDVDAAVESFEKALKLEPN--DGGIKKELAV-AKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       298 ~ka~~~~g~~~-~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~-~~~~~~~~~~~~k~~~~~~f  360 (361)
                      ...+..+..-+ .-.+..|+....+.-++.+.|.  +..+...+.+ -..++.+..+...+.|+.+|
T Consensus       198 k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF  264 (404)
T PF10255_consen  198 KNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELF  264 (404)
T ss_pred             hhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            11112221111 1235667777778778888886  4545444443 33334444444556666665

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.99  E-value=3.8  Score=29.36  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=29.9

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      .|..+...|..+=+.|+|++|+.+|.++|.++...
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~   39 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV   39 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            45667778888999999999999999999988654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.98  E-value=6.8  Score=35.06  Aligned_cols=89  Identities=18%  Similarity=0.091  Sum_probs=71.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       272 ~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +++.+-..-..|+.....+|.++|-+.-.|..+-.++..++ +..+-++++...++-+|.|=.+|-..+.+-+.++...-
T Consensus        51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~  130 (318)
T KOG0530|consen   51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF  130 (318)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence            34556677889999999999999999888877777666655 78889999999999999999999988888888775543


Q ss_pred             HHHHHHhhhc
Q 018089          351 QEKKQYRKMF  360 (361)
Q Consensus       351 ~~k~~~~~~f  360 (361)
                      .+-...++|+
T Consensus       131 rELef~~~~l  140 (318)
T KOG0530|consen  131 RELEFTKLML  140 (318)
T ss_pred             chHHHHHHHH
Confidence            5555555554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=86.93  E-value=6.7  Score=37.43  Aligned_cols=79  Identities=13%  Similarity=0.094  Sum_probs=58.9

Q ss_pred             cCCHHHHHHHHHHHhhcCC-Cc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          277 LGDLKGALLDTEFAMRDGD-DN----------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       277 l~~~~~Ai~~~~~al~~~p-~~----------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      .|+|..|++.|.+.-.+.. ..          +-.--.+..||+.+++.+.|+.--.+.+-++|....-....+.+.+.+
T Consensus       196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L  275 (569)
T PF15015_consen  196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL  275 (569)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence            3445555555555544432 11          223345889999999999999999999999999988888888889999


Q ss_pred             HHHHHHHHHH
Q 018089          346 HERREQEKKQ  355 (361)
Q Consensus       346 ~~~~~~~k~~  355 (361)
                      +++.++.+.+
T Consensus       276 eRy~eAarSa  285 (569)
T PF15015_consen  276 ERYSEAARSA  285 (569)
T ss_pred             HHHHHHHHHH
Confidence            9988876654

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=86.92  E-value=2.7  Score=34.07  Aligned_cols=106  Identities=20%  Similarity=0.175  Sum_probs=55.0

Q ss_pred             eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCce--EEeCcCCCCCCCCCCccCCCCCCCCC
Q 018089           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFM--IQGGDISAGDGTGGESIYGLKFEDEN   95 (361)
Q Consensus        18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~--iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (361)
                      -.++.+|..|.||+||+-|.+.-              =|.+..+|=..-|--  +.-|++..           ....-||
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN   62 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN   62 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S
T ss_pred             eEEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc
Confidence            57899999999999999999986              278888887776653  34355431           0112244


Q ss_pred             cCCCCCCceEEEee---eCCCCCC-C--cceEeecCCC--------CCCCCCceEEeEEecChHHHHHHh
Q 018089           96 FELKHERKGMLSMA---NAGPNTN-G--SQFFITTTRT--------SHLDGKHVVFGRVIKGMGVVRSIE  151 (361)
Q Consensus        96 ~~~~~~~~g~~~~~---~~~~~~~-~--sqF~i~~~~~--------~~ld~~~~vfG~v~~g~~vl~~i~  151 (361)
                      ... +..+|-|.+.   ....+.+ |  +..-|..+..        .++.  -.+|++|.+|++-+.++-
T Consensus        63 ~T~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~  129 (147)
T PF12903_consen   63 HTV-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEAC  129 (147)
T ss_dssp             EES-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHH
T ss_pred             Ccc-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHH
Confidence            332 3346777666   1111111 1  3333333322        2233  468999999998666554

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.90  E-value=22  Score=33.77  Aligned_cols=115  Identities=10%  Similarity=0.001  Sum_probs=74.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCC------CCc-----cchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG------IDE-----GKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +..+...+..+..+|+++.|.+..++||=.+..+....-      ...     .-....+.....+.........+.|-+
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~  119 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW  119 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence            455667777788888888888888888766652222110      000     001112334445556666778889999


Q ss_pred             HHHHHHHHHHhhcCCC-ch-hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          281 KGALLDTEFAMRDGDD-NV-KALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~-~~-ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      ..|+++|.-.+.+||. ++ -+++.+=......++|+--++.++....
T Consensus       120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            9999999999999998 43 4455555555666788766666665444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.78  E-value=12  Score=37.25  Aligned_cols=119  Identities=20%  Similarity=0.026  Sum_probs=83.5

Q ss_pred             HHhccHHHH---hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh-
Q 018089          216 KVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM-  291 (361)
Q Consensus       216 ~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al-  291 (361)
                      ...|..+|+   ...|++|...|.-|....+      ...-.......|..+..++.+|..+..+|+.+-|....+++| 
T Consensus       239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d------~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly  312 (665)
T KOG2422|consen  239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHD------PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY  312 (665)
T ss_pred             ccCceeEEEeecchHHHHHHHHHHHHHhhcC------CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            345666653   5667788888777766321      011111123468889999999999999999887777777766 


Q ss_pred             ----hc----------------CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Q 018089          292 ----RD----------------GDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAV  340 (361)
Q Consensus       292 ----~~----------------~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~  340 (361)
                          .+                .|.|   ..++++.-+.+...|.+..|.++++-.+.++|. |+.....+-.
T Consensus       313 ~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID  385 (665)
T KOG2422|consen  313 VFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLID  385 (665)
T ss_pred             HHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHH
Confidence                11                2222   568888888889999999999999999999998 7755444433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=86.68  E-value=5.6  Score=39.47  Aligned_cols=69  Identities=19%  Similarity=0.090  Sum_probs=60.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH-HHhhCCCCHHHHHHH
Q 018089          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKEL  338 (361)
Q Consensus       270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~-a~~l~p~~~~~~~~l  338 (361)
                      ++..+..++....+......++..+|++.+++.++|.+....+....+...+.. +....|.|......+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence            788888899999999999999999999999999999999888877766665555 899999998877777

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.47  E-value=7.5  Score=34.67  Aligned_cols=52  Identities=17%  Similarity=0.155  Sum_probs=37.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHH
Q 018089          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------~~~~~~~l~~~~~~~~~~~  349 (361)
                      ......+|.-|+.+|+|++|+..|+.+...--.      ...+...+.+|...+++.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~  235 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE  235 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence            345568899999999999999999999665332      2356666666666665544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.10  E-value=4.5  Score=32.73  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=24.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      .....++...+..|+|.-|...++.++..+|+|..++..++.+...+.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555555554444

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.10  E-value=4.2  Score=28.90  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ++.|..+...|...=..|+|++|+.+|.+|++++...
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~   39 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3467778888899999999999999999999977544

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=85.68  E-value=16  Score=33.18  Aligned_cols=81  Identities=28%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCchhHHHH
Q 018089          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFR  303 (361)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~~~~al~~~p~~~ka~~~  303 (361)
                      ...|+..|.++-.                    .....+..++|.+|..    ..++.+|..+|.+|-+...  ..+.++
T Consensus       171 ~~~A~~~~~~aa~--------------------~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~  228 (292)
T COG0790         171 DKKALYLYRKAAE--------------------LGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN  228 (292)
T ss_pred             HHhHHHHHHHHHH--------------------hcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH
Confidence            3478888888755                    2366788999988866    4589999999999999886  999999


Q ss_pred             HHHHHHhcC---------------CHHHHHHHHHHHHhhCCCC
Q 018089          304 QGQAYMALN---------------DVDAAVESFEKALKLEPND  331 (361)
Q Consensus       304 ~g~~~~~~~---------------~~~~A~~~~~~a~~l~p~~  331 (361)
                      ++ +++..|               +...|..++.++....+..
T Consensus       229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence            99 666555               8888999999888776543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.61  E-value=1.1  Score=24.55  Aligned_cols=24  Identities=17%  Similarity=-0.054  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      .+..++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            367899999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.57  E-value=6.1  Score=32.19  Aligned_cols=81  Identities=12%  Similarity=-0.064  Sum_probs=61.4

Q ss_pred             HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~  296 (361)
                      +.........+.+++...... ++.                 +.|....+-.--+..++..|+|.+|+..+....+-.+.
T Consensus        15 ~~~~~aL~~~d~~D~e~lLdA-Lrv-----------------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~   76 (153)
T TIGR02561        15 EVLMYALRSADPYDAQAMLDA-LRV-----------------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA   76 (153)
T ss_pred             HHHHHHHhcCCHHHHHHHHHH-HHH-----------------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence            333344446666666655543 441                 67777778888889999999999999999999999888


Q ss_pred             chhHHHHHHHHHHhcCCHH
Q 018089          297 NVKALFRQGQAYMALNDVD  315 (361)
Q Consensus       297 ~~ka~~~~g~~~~~~~~~~  315 (361)
                      .+-+.--++.|++.+|+.+
T Consensus        77 ~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        77 PPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             chHHHHHHHHHHHhcCChH
Confidence            7777777888999998764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.54  E-value=4.8  Score=28.68  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ..|..+...|...=+.|+|++|+.+|..+|+++...
T Consensus         4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~   39 (75)
T cd02677           4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            456677778888889999999999999999988654

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=85.39  E-value=30  Score=32.88  Aligned_cols=86  Identities=14%  Similarity=-0.019  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCchhHHHHHHHHHHh---cCCHHHHHHHHHH-HHhhCCCCHH
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMA---LNDVDAAVESFEK-ALKLEPNDGG  333 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~----~p~~~ka~~~~g~~~~~---~~~~~~A~~~~~~-a~~l~p~~~~  333 (361)
                      .......|+=.+|....+|+.-+...+..-.+    -++.....+..|.|+..   .|+.++|+..+.. .....+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            44556678888899999999999888877766    34566777788888888   8999999999999 5556667889


Q ss_pred             HHHHHHHHHHHHHH
Q 018089          334 IKKELAVAKKKIHE  347 (361)
Q Consensus       334 ~~~~l~~~~~~~~~  347 (361)
                      .+-.++.+.+.+-.
T Consensus       219 ~~gL~GRIyKD~~~  232 (374)
T PF13281_consen  219 TLGLLGRIYKDLFL  232 (374)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.23  E-value=26  Score=35.47  Aligned_cols=114  Identities=13%  Similarity=0.054  Sum_probs=81.5

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      |.-.+...-.-|=++.....|.+.|.                  +.--.+.+-.|.|..+..-.-+++|-+.|++.|.+-
T Consensus       480 Ws~y~DleEs~gtfestk~vYdriid------------------LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF  541 (835)
T KOG2047|consen  480 WSMYADLEESLGTFESTKAVYDRIID------------------LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF  541 (835)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence            33344444456677778888888888                  555667778889988888888999999999999886


Q ss_pred             CC--c---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHH
Q 018089          295 DD--N---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKIH  346 (361)
Q Consensus       295 p~--~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~  346 (361)
                      |-  -   +..|.......+.-...+.|...|++|++..|..  +.+....+.++++.+
T Consensus       542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G  600 (835)
T KOG2047|consen  542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG  600 (835)
T ss_pred             CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            42  2   3345555666666678999999999999998842  345555555555544

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=84.78  E-value=6.4  Score=27.92  Aligned_cols=38  Identities=24%  Similarity=0.286  Sum_probs=31.3

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcc
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      .+.|..+...|..+=+.|+|++|+.+|.+|++.+....
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~   42 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGI   42 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            34566777788888889999999999999999886543

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.73  E-value=29  Score=32.01  Aligned_cols=99  Identities=12%  Similarity=0.096  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--C
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD------DN--VKALFRQGQAYMALNDVDAAVESFEKALKL--E  328 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p------~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--~  328 (361)
                      .......+...+|..|-+-++|..|.... .++.++.      .+  ...+.++|.+|...++-.+|..+..++--+  +
T Consensus        98 feEqv~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~  176 (399)
T KOG1497|consen   98 FEEQVASIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE  176 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence            45667788999999999999999985543 2333332      11  346778999999999999999999887443  4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018089          329 PNDGGIKKELAVAKKKIHERREQEKKQYRK  358 (361)
Q Consensus       329 p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  358 (361)
                      ..|+.....+..|..+.-+++++--++.++
T Consensus       177 ~~Ne~Lqie~kvc~ARvlD~krkFlEAAqr  206 (399)
T KOG1497|consen  177 SSNEQLQIEYKVCYARVLDYKRKFLEAAQR  206 (399)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578888888888888877777765444433

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.62  E-value=3.1  Score=29.62  Aligned_cols=37  Identities=22%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ++.|..+...|...=..|+|++|+.+|..+|+++...
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~   39 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            3456777888888999999999999999999987644

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.57  E-value=8.7  Score=27.35  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=24.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhh
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYL  242 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~  242 (361)
                      .|..+...+-.+=+.|+|.+|+.+|+++++++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L   36 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVL   36 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            45666667777778888888888888887754

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.43  E-value=1.8  Score=30.89  Aligned_cols=35  Identities=11%  Similarity=0.056  Sum_probs=29.5

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhh
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~  244 (361)
                      +.+..+...|...=..|+|++|+..|..|++++..
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            35666777888888999999999999999997754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.13  E-value=8  Score=27.79  Aligned_cols=58  Identities=16%  Similarity=-0.001  Sum_probs=43.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~k---a~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      .|.-++...+.++|+....++|+..++...   ++-.+..+|...|+|++++++--+-+++
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455788999999999999988776654   4445667899999999998876555544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.06  E-value=16  Score=34.82  Aligned_cols=90  Identities=13%  Similarity=0.029  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLK------------LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN--DVDAAVESFEKA  324 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~------------l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~--~~~~A~~~~~~a  324 (361)
                      .+|....+|+-+-.++..            +..+++-+.....+|..+|++.-+|+.+..++....  ++..-++.++++
T Consensus        58 ~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~  137 (421)
T KOG0529|consen   58 KNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKA  137 (421)
T ss_pred             hCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            455555555555444332            234677788889999999999999999999999777  478889999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          325 LKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       325 ~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      ++.||.|-.+|...+-+....+..
T Consensus       138 L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  138 LKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HhcCcccccchHHHHHHHHHHhcc
Confidence            999999988888877776666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=83.71  E-value=4  Score=42.21  Aligned_cols=63  Identities=19%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhh---------------------cCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMR---------------------DGDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~---------------------~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~  323 (361)
                      .+|.--|+..-..|+.+.|+..|..|-.                     -...+--|.|.+|.-|...|++.+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4444456666678888888888887751                     1223466899999999999999999988877


Q ss_pred             HHhh
Q 018089          324 ALKL  327 (361)
Q Consensus       324 a~~l  327 (361)
                      |-.+
T Consensus       993 Aqaf  996 (1416)
T KOG3617|consen  993 AQAF  996 (1416)
T ss_pred             HHHH
Confidence            6443

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.42  E-value=8.6  Score=27.69  Aligned_cols=41  Identities=22%  Similarity=0.063  Sum_probs=32.5

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE  249 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~  249 (361)
                      .+.|-...+.|-.+=..|+.+.|+.+|+++++.+......+
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~   45 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVP   45 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence            34566777788888888999999999999999886554433

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=83.34  E-value=8  Score=41.95  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=86.0

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..++.++..+.+.+++++|+..-.+|.-+.+..          .....+.....|.|++...+..++...|+..+.++
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~----------~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV----------LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechh----------ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence            46677888999999999999999888876422211          01135677788999999999999999999999888


Q ss_pred             hhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       291 l~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      +.+        .|.-+-...+++..+..+++++.|+.+++.|+.++
T Consensus      1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            854        45556677888999999999999999999999865

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.92  E-value=6.2  Score=28.08  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      .+..+|.-+=+.|++++|+.+|++++
T Consensus         8 ~~a~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682           8 KYAINAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            34455555555566655555555444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.79  E-value=3.1  Score=42.86  Aligned_cols=33  Identities=21%  Similarity=0.488  Sum_probs=29.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD  243 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~  243 (361)
                      .++.++..|+.+|++|+|++|...|-++|..++
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le  399 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE  399 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence            466778889999999999999999999998764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.16  E-value=17  Score=38.06  Aligned_cols=123  Identities=12%  Similarity=0.103  Sum_probs=76.5

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-------CCHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-------GDLK  281 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-------~~~~  281 (361)
                      +.......+.|-.+...|.|.+|+++|+..|-.++-...+...+..+   .+.....+...+....+++       ...+
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~ae---a~~li~i~~eYi~gL~~E~~Rr~l~~~~~~ 1064 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAE---ADELIKICREYIVGLSVELERRKLKKPNLE 1064 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHH---HHHHHHHHHHHHhhheeeeeecccCCchHH
Confidence            44556667889999999999999999999988666544433333222   3333333323333322222       2234


Q ss_pred             HH--HHHHHHHhhcCCCchhHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089          282 GA--LLDTEFAMRDGDDNVKALFRQ-GQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       282 ~A--i~~~~~al~~~p~~~ka~~~~-g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  334 (361)
                      .+  +..|=.-..+.|-..-.-.+. -.++++++++..|...-.+.+++.|..+.+
T Consensus      1065 ~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1065 QQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence            44  223333335566544333444 446889999999999999999999976654

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=82.04  E-value=1.2  Score=40.65  Aligned_cols=74  Identities=7%  Similarity=0.047  Sum_probs=60.1

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS-ACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~l~~~~~Ai~~~~~a  290 (361)
                      ...|...++...+.|-|.+-...|.+++.                  .+|.++.+|..-+ .-+...++++.|...++++
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~------------------khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g  168 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLT------------------KHPLNVDLWIYCCAFELFEIANIESSRAMFLKG  168 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCCceeeeeeccchhhhhccHHHHHHHHHhh
Confidence            44566667777788899999999999998                  8999999987633 3356678999999999999


Q ss_pred             hhcCCCchhHHHH
Q 018089          291 MRDGDDNVKALFR  303 (361)
Q Consensus       291 l~~~p~~~ka~~~  303 (361)
                      |+++|++++.|+.
T Consensus       169 lR~N~~~p~iw~e  181 (435)
T COG5191         169 LRMNSRSPRIWIE  181 (435)
T ss_pred             hccCCCCchHHHH
Confidence            9999999876543

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=82.01  E-value=3.7  Score=22.97  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=20.6

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          312 NDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       312 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      |+++.|...|++++...|.+..+|......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            456677777777777777777777665544

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.76  E-value=2.7  Score=26.54  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=24.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          268 TNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +++|.+|+.+|+.+.|....++++.-.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            689999999999999999999999643

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.65  E-value=5.7  Score=28.10  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      +.|..+...|...=+.|+|++|+.+|..|++++...
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~   39 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            456667778888888999999999999999977654

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-84
1dyw_A	173	Biochemical And Structural Characterization Of A Di		1e-51
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		3e-50
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-50
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-49
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		7e-48
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		2e-46
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		1e-44
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		2e-44
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		8e-44
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-43
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		2e-43
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		3e-43
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		5e-43
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		7e-43
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		7e-43
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		8e-43
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		8e-43
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		8e-43
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		8e-43
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-42
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-42
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-42
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		1e-42
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-42
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-42
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-42
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		3e-42
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		3e-42
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		4e-42
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		4e-42
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		4e-42
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		4e-42
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		5e-42
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		8e-42
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		1e-41
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		1e-41
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-41
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		2e-41
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		1e-40
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-40
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		2e-40
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		3e-40
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		6e-40
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-39
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-39
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		2e-38
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		2e-38
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		1e-36
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-36
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		2e-36
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-36
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		6e-35
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		2e-32
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		8e-28
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		9e-28
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		1e-27
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		1e-25
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		1e-25
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		4e-24
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		1e-23
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		1e-21
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		6e-21
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-20
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		8e-20
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		2e-16
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		4e-15
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		3e-13
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-11
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		5e-09
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		6e-09
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-08
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		3e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-08
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		6e-08
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		3e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-07
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		1e-06
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		2e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-06
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		2e-06
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		3e-06
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		4e-06
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		4e-06
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		9e-05
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		9e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-04

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/359 (44%), Positives = 217/359 (60%), Gaps = 3/359 (0%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192
Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252
Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKAL 301
           ++    +   ++   + L+        N  AC                A+     N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           +R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 125/173 (72%), Gaps = 2/173 (1%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG  +G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQ            ESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+ T +T  LDGKHVVFGRV++G+ VV+++E   +  +  P+ D  I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 115/173 (66%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 24  VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH    +LSMAN G +TNGSQF
Sbjct: 84  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  187 bits (475), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 114/171 (66%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQ            ESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P+ F DISI  +  GRI++E+Y D +PKTAENFRALCTGEKG G  +G PLHYK   
Sbjct: 5   MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKG-RSGKPLHYKSSV 63
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELK---HERKGMLSMANAGPNTNG 117
           FHRVI  FMIQ            ESIYG  F DE+F  K   H   G LSMANAGPNTNG
Sbjct: 64  FHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNG 123
Query: 118 SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           SQFFI T  T  LDGKHVVFGRVI G+ VV+ +E + +       + + ++DCGE+
Sbjct: 124 SQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTR-SRIVVSDCGEV 178

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 110/172 (63%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P+C  DI I  E  GRI+ ++++D+ PKT +NF  LC+GEKG+G  TG  L YKG  F
Sbjct: 18  GSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTF 77
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRV+K FMIQ            ESIYG  F+DENF LKH+R  +LSMAN G +TNGSQFF
Sbjct: 78  HRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT    HLDG HVVFG VI G  V+  IE++ T     P ADV + DCG +
Sbjct: 138 ITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  176 bits (446), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 113/170 (66%), Gaps = 3/170 (1%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FHR
Sbjct: 11  PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFHR 67
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQ             SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFIT
Sbjct: 68  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 127
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 128 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  174 bits (440), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  + DISIG    GRI +E++ D +P TAENFRALCTGEKG+G  +G PL Y G  F
Sbjct: 18  GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMG-QSGKPLCYTGSFF 76
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FMIQ            ESIYG KF DENF   H+   +LSMANAGPNTNGSQFF
Sbjct: 77  HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFF 136
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           ITT     LDGKHVVFG+V++GM VV+SIE   +  N  P   V IT  G
Sbjct: 137 ITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+++ ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+++ ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  171 bits (434), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 17  KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 68
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 69  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 7   KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 58
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 59  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 118
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I
Sbjct: 119 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 9   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 60
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 61  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 172

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 53
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 3   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 54
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 55  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 114
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 115 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 165

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 52
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 53  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 113 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 163

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK IG + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM Q            ESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E    G     +   V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEK--EGAKSGYVKRSVVITDCGEL 170

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+L+MANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FH++I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 106/165 (64%), Gaps = 9/165 (5%)
Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
           F DI+      G I  ++++DV+PKTA NFRALCTGEKG G        Y G  FHRVI 
Sbjct: 5   FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHRVIP 56
Query: 67  GFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
            FM+Q            +SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFITT  
Sbjct: 57  DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV 116
Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           TS LDGKHVVFG VI GM VV++IE   +G    P + + I  CG
Sbjct: 117 TSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGK-PRSRIEIAKCG 160

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 11/171 (6%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F DI IG    GRI++E+ +D++P+TAENFRALCTGE+G G        Y    FHR
Sbjct: 11  PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCFHR 62
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM Q            +SIYG KF+DENF+L+HE  G+LSMAN+GPNTNGSQFFI 
Sbjct: 63  VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD-VTITDCGEI 173
           TT+   LDGKHVVFGRV+ G  VV+ +E V  G     + + V I+ CGE+
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESV--GSKSGKVKEPVIISRCGEL 171

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 4   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + F D+ IG +  GRI++ ++ +V+PKT ENF AL TGEKG G        YKG  FHRV
Sbjct: 9   KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHRV 60
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ             SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT 
Sbjct: 61  IKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T+ + LDGKHVVFG+V+ GM VV SIE   T  +D P+ D TI + G+I
Sbjct: 121 TKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG V +GM +V ++E   +  N      +TI DCG++
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V +++   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGS-RNGKTSKKITIADCGQL 163

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 109/171 (63%), Gaps = 5/171 (2%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK IG + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM Q            ESIYG  F DENF +KH++ G+LSMANAGPNTN SQF I
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCGE 172
           T      LDGKHVVFG+VI+GM VVR +E    G     +   V ITDCGE
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEK--EGAKSGYVKRSVVITDCGE 169

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + F D+ IG +  GRI++ ++  V+PKT ENF AL TGEKG G        YKG +FHRV
Sbjct: 17  KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRV 68
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ             SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT 
Sbjct: 69  IKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T+ + LDGKHVVFG+VI GM VV SIE   T  +D P+ + +I + G+I
Sbjct: 129 TKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 8   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 59
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 60  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 168

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 10  SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 61
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FM Q            +SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF
Sbjct: 62  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 171

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 2   SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 53
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FM Q            +SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF
Sbjct: 54  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 114 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 163

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   F
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM+Q            +SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT  TS LDGKHVVFG VI+G+ +VR +E   +       A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 163

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  162 bits (410), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 111/169 (65%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + DI+IG E  GR+++ ++ + +PKT ENF+ L +GE G G        YKG  FHRV
Sbjct: 7   KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHRV 58
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG +F+DEN ++KH   G +SMANAGPN+NGSQFF+TT
Sbjct: 59  IRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTT 117
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG+HVVFG+V++GM VV+ +E+  TG ND P   V I DCG +
Sbjct: 118 APTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 9/168 (5%)
Query: 6   CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI 65
            F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   FHRVI
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 57
Query: 66  KGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTT 125
             FM+Q            +SIYG KF DENF++KH + G+LSMANAG NTNGSQFFITT 
Sbjct: 58  PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            TS LDGKHVVFG VI+G+ +VR +E   +       A + ITDCG +
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 164

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 106/169 (62%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+    +  GR++ ++YND++PKTAENFRALCTGEKG G        Y G  FHRV
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG--------YAGSPFHRV 54
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I  FM+Q            +SIYG KF DENF+  H+R G+LSMANAGPNTNGSQFFITT
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
                LDGKHVVFG V+ G  +V+ +E + +  +    A + +   GE+
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GF  Q            +SIYG KFEDENF LKH   G+LS ANAGPNTNGSQFFI 
Sbjct: 55  IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +G  +V + E   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGS-RNGKTSKKITIADCGQL 163

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 104/171 (60%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ + DI IG +  GRI   + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 11  SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG--------FKGSSF 62
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  F  Q            +SIYG KF+DENF LKH   G+LS AN+GPNTNGSQFF
Sbjct: 63  HRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFF 122
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 123 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 172

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE  +     +P+ YK   F
Sbjct: 58  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIF 114
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVIK FMIQ             SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFF 174
Query: 122 ITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHV-MTGDNDCPIADVTITDCGEI 173
           ITT +   LDGK+VVFGR+I    + +++ IE+V +T     P   + + +CGE+
Sbjct: 175 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           R + D+ IG +  GRI++ ++   +PKTA NF  L    KG G        Y G +FHRV
Sbjct: 8   RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRV 59
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I  FMIQ             SIYG KF DENF+LKH   G LSMANAG +TNGSQFFITT
Sbjct: 60  IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 119
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T  LDG+HVVFG++++GM VVR IE       D P  DV I   G I
Sbjct: 120 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 99/169 (58%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FHRV
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG+HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F D+    E  GRI +E++++++P+TAENFRALCTGEKG G        +K   
Sbjct: 4   MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--------FKNSI 55
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  F+ Q            +SIYG KFEDENF++KH   G+LSMAN G NTN SQF
Sbjct: 56  FHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQF 115
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            IT  +  HLD KHVVFG V  GM  V+ IE   +         +TIT+CG+I
Sbjct: 116 VITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV-CRRITITECGQI 167

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FHRV
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 124 APTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 100/171 (58%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    + D+    E  GRI++++ +D++PKTA+NFR LC   KG G        YKG  F
Sbjct: 26  ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTF 77
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I GFM+Q             SIYG KF DENFELKH ++G+LSMAN G +TNGSQFF
Sbjct: 78  HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCG 171
           IT  +T  LD KHVVFG V++GM VV  I    +          + I DCG
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           GRI+  +++  +PKTA+NFR LC    G G        Y+   FHR+I  FMIQ      
Sbjct: 22  GRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFTR 73
Query: 78  XXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVF 137
                  SIYG KF DENF  KH++KG+LSMANAGPNTNGSQFFITT  TS LDGKHVVF
Sbjct: 74  GNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVF 133
Query: 138 GRVI--KGMGVVRSIEHVMTGDNDCPIADVT---ITDCGEI 173
           G V   K   VV+ IE +  G +   +   T   I +CGE+
Sbjct: 134 GEVADEKSYSVVKEIEAL--GSSSGSVRSNTRPKIVNCGEL 172

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  120 bits (302), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q      
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                  SI+G KFEDE  E LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 59  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
           FG+VI G+  +  +E +   +      ND  I D+TI
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q      
Sbjct: 16  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                  SI+G KFEDE  E LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 65  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
           FG+VI G+  +  +E +   +      ND  I D+TI
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 160

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 92/168 (54%), Gaps = 14/168 (8%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+   D +I     G I  +++    PKT ENF   C   +          +Y G  FHR
Sbjct: 17  PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN--------GYYNGHTFHR 65
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IKGFMIQ            ESI+G +FEDE +  L+H+R   LSMANAG NTNGSQFFI
Sbjct: 66  IIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITD 169
           T   T  LD KH VFGRV KGM VV+ I +V +    D P  DV+I +
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 10  ISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFM 69
           I+I   L G   VE+Y    PKT  NF  LC  E G          Y    FHRVI  F+
Sbjct: 41  ITIYTNL-GDFEVELYWYHSPKTCLNFYTLC--EMGF---------YDNTIFHRVIPNFV 88
Query: 70  IQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTS 128
           IQ            +SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     
Sbjct: 89  IQGGDPTGTGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLP 147
Query: 129 HLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           HLDGKH +F RV K M  + +I  V T   + PI D+ I
Sbjct: 148 HLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKI 186

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I + ++     KT +NF               +  +Y    FHRVIK FM+Q      
Sbjct: 15  GDIHISLFYKECKKTVQNFSV-----------HSINGYYNNCIFHRVIKHFMVQTGDPSG 63
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 ESI+G +FEDE F+ L H +  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 64  DGTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FG+V +G  +V  IE V T   D P+ D+ I +
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 13/138 (9%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
           +G + +E++ D+ PKT ENF  LC              +Y G  FHR I+ F+IQ     
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT 76
Query: 77  XXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHV 135
                  ES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++LD KH 
Sbjct: 77  GTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 136 VFGRVIKGMGVVRSIEHV 153
           +FGRV+ G  V+ ++E+V
Sbjct: 136 IFGRVVGGFDVLTAMENV 153

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 17/157 (10%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G +  E++    PK  +NF AL               +YK   FH+ IKGF+IQ      
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPTG 74
Query: 78  XXXXXXESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDG 132
                 ESIYG  F+DE + ELK++R+G+LSMA+ G    PNTNGSQFFIT +    L+G
Sbjct: 75  TGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
Query: 133 KHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           ++V+FG++I G   + ++E+  +  +  PI ++ I D
Sbjct: 134 EYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 81/157 (51%), Gaps = 11/157 (7%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPN--TGVPL--HYKGVRFHRVIKGFMIQXX 73
           G I + ++ +  PKT  NF  L  G K       +G P    Y G  FHRVI+GFMIQ  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 74  XXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
                           KF DE + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ 
Sbjct: 93  DPTGTGRGGPG----YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148
Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI 167
           +H +FG VI  +   VV +I    T  ND P   V I
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E+++   PK   NF  LC           +  +Y    FHRV+ GF++Q      
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 78  XXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 ESIYG  F+DE +  L+  R+G+++MANAG + NGSQFF T  R   L+ KH +
Sbjct: 83  TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 137 FGRV 140
           FG+V
Sbjct: 142 FGKV 145

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 14  VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXX 73
           V  +G + +E++ D+ P+  ++F  LC  +           ++    FHR I+ FMIQ  
Sbjct: 12  VTTQGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGG 60
Query: 74  XXXXXXXXXXESIY-----------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
                     + +            G  FEDE +  L H+  G+LSMAN G ++N S+FF
Sbjct: 61  RAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFF 120
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMT 155
           IT     HL+ KH +FGRV+ G+ V+R  E + T
Sbjct: 121 ITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW MN+ +       +K  G  ++K+  YK AL +Y+K + +L+        +  K+ +L
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           R        N + C                A+    +N K LFR+G+A++A+ND + A  
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARA 251
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            F+K L+L PN+   K +LAV +++I  +  +EKK Y  MF+
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW  N+ +       +K  G  ++K+  YK AL +Y+K + +L+        +  K+ +L
Sbjct: 135 SWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           R        N + C                A+    +N K L R+G+A++A+ND + A  
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 251
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            F+K L+L PN+   K +LAV +++I  +  +EKK Y  MF+
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +V++++  GNE + ++DYK A+  YR AL  LD    +E   E +   L +    ++ 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 269 NSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N S C             +   ++  + N KALFR+ +A +A   +D A E  +  L+  
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 329 PNDGG-IKKELAVAKKKIHERREQEKKQYRKMFQ 361
           P     + +E+ +  ++  E++   +  Y KMFQ
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 41/171 (23%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
            G I ++++ D  P+TA NF                  HY G  FHRVI GFMIQ     
Sbjct: 8   HGTITLKLFADKAPETAANFEQYVKDG-----------HYDGTIFHRVIDGFMIQGGGFE 56
Query: 77  XXXXXXXESIYGLKFEDENFELKHE-------RKGMLSMA-NAGPNTNGSQFFITTTRTS 128
                      G+K +     +K+E       +K  ++MA    P++  +QFFI     +
Sbjct: 57  P----------GMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNA 106
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
            LD          + VFG V++G  VV  I+ V TG      D P+ DV I
Sbjct: 107 FLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+  +       +K  G  ++K   Y  A+ +Y K + +L++ +   G+ E +S + 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLSEKESKAS 312
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C              + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            FEK L++ P +   + ++++ +KK  E  E++++ Y  MF+
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+  +       +K  G  ++K   Y  A+ +Y K + +L++ +   G+ E +S + 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY---GLSEKESKAS 312
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C              + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            FEK L++ P +   + ++ + +KK  E  E++++ Y  MF+
Sbjct: 373 DFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 414

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++ K  GN +YK+ DY+ A+  Y+KAL           +D   +S+        + N
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----------LDPNNASA--------WYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N KA +R+G AY    D   A+E ++KAL+L+P
Sbjct: 49  LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAKAKQNLGNAKQK 123

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL--DICWEKEGIDEGKSSSLRKTKSQI 266
           + A D  K+ GN  +K++  + A+++Y  A+ Y+  D  ++  G  +  + ++   K+  
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV---KNPC 232
Query: 267 FTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
             N +AC                 + + + N KALFR+G+A   L  +D+A + F KA K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 327 LEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
             P+D  I++EL    ++     +++K+ Y+ +F+
Sbjct: 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX- 76
           G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF---------YNNTIFHRVINGFMIQGGGFEP 57
Query: 77  -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
                   E I      + N  LK+ R G L+MA    P++  +QFFI       L+   
Sbjct: 58  GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
                  + VF  V+ GM VV  I+ V TG      D P  DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++    GN +YK+ DY  A+  Y+KAL                   L    ++ + N
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N +A +  G AY    D D A+E ++KAL+L+P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAEAKQNLGNAKQK 123

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 30/194 (15%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGE------KGIGP---NTGVPL 54
           PR ++DI +  E+ GR+ ++++ D  P   ENF  L  G+       G G    N  +  
Sbjct: 15  PRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINR 74
Query: 55  HYKGVRFHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-------NFELKHERKGMLS 107
            Y+G +FH V+    I              ++Y     DE       ++   HE KG+LS
Sbjct: 75  TYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYC----DEPIPPVFGDYFYPHESKGLLS 130
Query: 108 MA----NAGPNTNGSQFFITT--TRTSH----LDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
           +      +G     S F IT    R S+    LD   VV G+V  G+ V+  I  ++   
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
Query: 158 NDCPIADVTITDCG 171
                   +I  CG
Sbjct: 191 AGRKYPTFSIGKCG 204

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 69/165 (41%), Gaps = 31/165 (18%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX- 76
           G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF---------YNNTIFHRVINGFMIQGGGFEP 57
Query: 77  -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
                   E I      + N  LK+ R G L+MA    P++  +QFFI       L+   
Sbjct: 58  GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
                  + VF  V+ GM  V  I+ V TG      D P  DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 1/151 (0%)
Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
           AV  I   GN  Y++   K A  KY  A+  L     KE     +   L +  + +  N 
Sbjct: 13  AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 72
Query: 271 SACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             C                 +   DDNVKA F++G+A+ A+ +   A   F K L+L+P 
Sbjct: 73  CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 132
Query: 331 DGG-IKKELAVAKKKIHERREQEKKQYRKMF 360
               + +EL   + +I ++ E++K ++R +F
Sbjct: 133 LAPVVSRELQALEARIRQKDEEDKARFRGIF 163

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++    GN +YK+ DY  A+  Y+KAL                   L    ++ + N
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LYPNNAEAWYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N +A +  G AY    D D A+E ++KAL+L P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAEAKQNLGNAKQK 123

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 71/171 (41%), Gaps = 41/171 (23%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
            G I +E+     PKT ENF  L   +KG         HY G  FHRVI GFMIQ     
Sbjct: 12  HGVIKLELDEAKAPKTVENF--LNYVKKG---------HYDGTIFHRVINGFMIQGGGFE 60
Query: 77  XXXXXXXESIYGLKFEDENFELKHERKGML-------SMANAG-PNTNGSQFFITTTRTS 128
                      GLK +  +  + +E    L       +MA    P++  +QFFI      
Sbjct: 61  P----------GLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNE 110
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
            L+          + VFG+V++G  +V  I+ V TG      D P  DV I
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G + VE++    P    NF  LC           +  +Y    FHRV+K F++Q      
Sbjct: 31  GDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPTG 79
Query: 78  XXXXXXESIY-GLKFEDENF-ELKHERKGMLSMANAGPN--------------TNGSQFF 121
                 ++ + G  F+ E    LK   +G++ +AN G +              TNG+QFF
Sbjct: 80  TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139
Query: 122 ITTTRTSHLDGKHVVFGRV 140
           IT  R   L+  + +FG+V
Sbjct: 140 ITLARADVLNNAYTLFGKV 158

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P   L  S      G I +E+     P + +NF            N+G    Y    FHR
Sbjct: 5   PHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHR 48
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFI 122
           VI GFMIQ             +   +K E +N  L++ R G ++MA  A  ++  SQFFI
Sbjct: 49  VIPGFMIQGGGFTEQMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFI 105
Query: 123 TTTRTSHLD-GK----HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEI 173
                + LD G+    + VFG+V+KGM V   I  V T D     + P   V I     +
Sbjct: 106 NVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL 165
Query: 174 P 174
           P
Sbjct: 166 P 166

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P   L  S      G I +E+     P + +NF            N+G    Y    FHR
Sbjct: 5   PHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHR 48
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFI 122
           VI GFMIQ             +   +K E +N  L++ R G ++MA  A  ++  SQFFI
Sbjct: 49  VIPGFMIQGGGFTEQMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFI 105
Query: 123 TTTRTSHLD-GK----HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEI 173
                + LD G+    + VFG+V+KGM V   I  V T D     + P   V I     +
Sbjct: 106 NVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 165
Query: 174 P 174
           P
Sbjct: 166 P 166

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACX 274
           IK  GNE +KK +   A+ KY++AL +      +E  D+      +  +     N + C 
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 275 XXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
                           ++   +NVKAL++ G A M    ++ A E+  KA  L PN+  I
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 335 KKELAVAKKKIHERREQEKKQYRKMF 360
           +    +   K+ E R+++K  +  MF
Sbjct: 159 RNSYELCVNKLKEARKKDKLTFGGMF 184

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK 261
           P   +   ++V+ ++  GNE +K  DY  AL  Y +AL          G+D     +  +
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQAL----------GLD-----ATPQ 62
Query: 262 TKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
            ++ +  N +AC                A+     +VKAL+R+ QA   L  +D AV   
Sbjct: 63  DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122
Query: 322 EKALKLEPND 331
           ++ + LEP +
Sbjct: 123 QRCVSLEPKN 132

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
           +N +A +  G AY    D D A+E ++KAL+L+PN+   K+ L  AK+K
Sbjct: 41  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	0.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-124
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-124
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-123
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-117
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-117
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-116
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-114
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-112
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-112
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-110
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-109
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-108
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-108
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-108
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-108
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-107
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-107
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-104
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	1e-91
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	7e-80
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	6e-78
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-76
2b71_A	196	Cyclophilin-like protein; structural genomics, str	4e-75
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	4e-71
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	5e-71
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	9e-70
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	2e-67
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-66
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	8e-66
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	3e-58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-53
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	6e-52
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-51
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	3e-46
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	3e-45
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	5e-45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-43
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	1e-33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-24
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-23
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-21
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	9e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-04

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  565 bits (1458), Expect = 0.0
 Identities = 175/360 (48%), Positives = 235/360 (65%), Gaps = 3/360 (0%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  
Sbjct: 13  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 72

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQF
Sbjct: 73  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 132

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D G
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWG 191

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LR
Sbjct: 192 IFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           Y++    +   ++   + L+        N  ACKLK+ D +GA+     A+     N KA
Sbjct: 252 YVE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           L+R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct: 310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  354 bits (910), Expect = e-124
 Identities = 104/173 (60%), Positives = 126/173 (72%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+QGGD S G+G GGESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  353 bits (909), Expect = e-124
 Identities = 98/174 (56%), Positives = 119/174 (68%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              P+C  DI I  E  GRI+ ++++D+ PKT +NF  LC+GEKG+G  TG  L YKG  
Sbjct: 17  RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FMIQGGD S G+G GGESIYG  F+DENF LKH+R  +LSMAN G +TNGSQF
Sbjct: 77  FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           FITT    HLDG HVVFG VI G  V+  IE++ T     P ADV + DCG + 
Sbjct: 137 FITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  351 bits (902), Expect = e-123
 Identities = 101/171 (59%), Positives = 124/171 (72%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD + GDGTGGESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  337 bits (866), Expect = e-117
 Identities = 105/174 (60%), Positives = 135/174 (77%), Gaps = 2/174 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG  +G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + G+GTGGESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           F+ T +T  LDGKHVVFGRV++G+ VV+++E   +  +  P+ D  I DCG++ 
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQLK 172

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  336 bits (865), Expect = e-117
 Identities = 98/171 (57%), Positives = 121/171 (70%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FH
Sbjct: 10  NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFH 66

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD   GDGTG  SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFI
Sbjct: 67  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  333 bits (855), Expect = e-116
 Identities = 103/171 (60%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              P  + DISIG    GRI +E++ D +P TAENFRALCTGEKG+G  +G PL Y G  
Sbjct: 17  QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSF 75

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + GDGTGGESIYG KF DENF   H+   +LSMANAGPNTNGSQF
Sbjct: 76  FHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQF 135

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           FITT     LDGKHVVFG+V++GM VV+SIE   +  N  P   V IT  G
Sbjct: 136 FITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  328 bits (844), Expect = e-114
 Identities = 99/171 (57%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK    + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM QGGDI+ G+G+GGESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E      +      V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  324 bits (833), Expect = e-112
 Identities = 83/176 (47%), Positives = 119/176 (67%), Gaps = 6/176 (3%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE  +     +P+ YK   
Sbjct: 57  PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTI 113

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FMIQGGD    +G+G  SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QF
Sbjct: 114 FHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQF 173

Query: 121 FITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           FITT +   LDGK+VVFGR+I    + +++ IE+V        P   + + +CGE+
Sbjct: 174 FITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  322 bits (829), Expect = e-112
 Identities = 98/179 (54%), Positives = 122/179 (68%), Gaps = 8/179 (4%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHR
Sbjct: 16  VKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHR 67

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD + GDGTGG+SIYG +F DENF+LKH   G +SMANAG +TNGSQFFIT
Sbjct: 68  VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 127

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGIS 182
           T +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I       I+
Sbjct: 128 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIA 186

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  317 bits (815), Expect = e-110
 Identities = 92/171 (53%), Positives = 108/171 (63%), Gaps = 9/171 (5%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
             + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FH
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVI+ FMIQGGD +  DGTGG+SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFI
Sbjct: 63  RVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFI 121

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TT  T  LDG+HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 122 TTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  318 bits (816), Expect = e-109
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTG---------VP 53
            PR ++DI +  E+ GR+ ++++ D  P   ENF  L  G+     + G         + 
Sbjct: 14  NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73

Query: 54  LHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED---ENFELKHERKGMLSMA- 109
             Y+G +FH V+    I  GDI   +G+   ++Y  +       ++   HE KG+LS+  
Sbjct: 74  RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVP 133

Query: 110 ---NAGPNTNGSQFFIT------TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160
               +G     S F IT      +     LD   VV G+V  G+ V+  I  ++      
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGR 193

Query: 161 PIADVTITDCGEIPEGADD 179
                +I  CG   + +  
Sbjct: 194 KYPTFSIGKCGAYLDSSQA 212

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  313 bits (804), Expect = e-108
 Identities = 97/173 (56%), Positives = 118/173 (68%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM Q GD +  +GTGG+SIYG +F DENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG VI+GM VV+ IE   +  +      + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  313 bits (804), Expect = e-108
 Identities = 87/176 (49%), Positives = 111/176 (63%), Gaps = 9/176 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            A    + D+    E  GRI++++ +D++PKTA+NFR LC   KG G        YKG  
Sbjct: 25  EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGST 76

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM+QGGD +A +GTGG SIYG KF DENFELKH ++G+LSMAN G +TNGSQF
Sbjct: 77  FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQF 136

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGEIPE 175
           FIT  +T  LD KHVVFG V++GM VV  I    +          + I DCG +  
Sbjct: 137 FITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGS 192

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  312 bits (801), Expect = e-108
 Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              PR F DI IG    GRI++E+ +D++P+TAENFRALCTGE+G G        Y    
Sbjct: 8   RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCC 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM QGGD   GDGTGG+SIYG KF+DENF+L+HE  G+LSMAN+GPNTNGSQF
Sbjct: 60  FHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI TT+   LDGKHVVFGRV+ G  VV+ +E V +  +      V I+ CGE+
Sbjct: 120 FICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVIISRCGEL 171

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  312 bits (801), Expect = e-108
 Identities = 93/173 (53%), Positives = 117/173 (67%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  
Sbjct: 9   RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSS 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FM QGGD +  +GTGG+SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQF
Sbjct: 61  FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+T  +T  LDGKHVVFG V +G+ V+R IE   +  +  P   V I DCGE 
Sbjct: 121 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVIIADCGEY 172

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  310 bits (798), Expect = e-107
 Identities = 93/172 (54%), Positives = 119/172 (69%), Gaps = 9/172 (5%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   F
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM+QGGD +  +GTGG+SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT  TS LDGKHVVFG VI+G+ +VR +E   +  +    A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 163

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  311 bits (798), Expect = e-107
 Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM QGGD +  +GTGG+SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  301 bits (774), Expect = e-104
 Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 16/180 (8%)

Query: 2   ARPRCFLDIS-----IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHY 56
           +  + F D+            GRI+  +++  +PKTA+NFR LC    G G        Y
Sbjct: 1   SMSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------Y 52

Query: 57  KGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTN 116
           +   FHR+I  FMIQGGD + G+GTGG SIYG KF DENF  KH++KG+LSMANAGPNTN
Sbjct: 53  RESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTN 112

Query: 117 GSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           GSQFFITT  TS LDGKHVVFG V   K   VV+ IE + +   +        I +CGE+
Sbjct: 113 GSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  271 bits (696), Expect = 1e-91
 Identities = 83/194 (42%), Positives = 112/194 (57%), Gaps = 23/194 (11%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I++E+Y    PKT +NF  L    +G         +Y G +FHR+IK FMIQGGD + 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+T   T  LDGKH +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC-----GEIPEGADDGISNFFNDGDSY 191
           FGRV +G+G+V  +  V T   D P+ DV I        G    G+  G      DG ++
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGSGGGSGGGSGGGSGDGGAF 188

Query: 192 PD-----WPADLDQ 200
           P+     +P D+ +
Sbjct: 189 PEIHVAQYPLDMGR 202

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  240 bits (615), Expect = 7e-80
 Identities = 72/154 (46%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++     KT +NF                  +Y    FHRVIK FM+Q GD S 
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS- 62

Query: 78  GDGTGGESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE F  L H +  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 63  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V +G  +V  IE V T   D P+ D+ I + 
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 156

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  236 bits (604), Expect = 6e-78
 Identities = 80/170 (47%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P+   D +I     G I  +++    PKT ENF        G         +Y G  FH
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNG---------YYNGHTFH 64

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
           R+IKGFMIQ GD + G G GGESI+G +FEDE +  L+H+R   LSMANAG NTNGSQFF
Sbjct: 65  RIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFF 123

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           IT   T  LD KH VFGRV KGM VV+ I +V      D P  DV+I + 
Sbjct: 124 ITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  231 bits (592), Expect = 2e-76
 Identities = 75/151 (49%), Positives = 97/151 (64%), Gaps = 13/151 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I++E+Y    PKT +NF  L    +G         +Y G +FHR+IK FMIQGGD + 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+T   T  LDGKH +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  229 bits (587), Expect = 4e-75
 Identities = 76/154 (49%), Positives = 87/154 (56%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G   VE+Y    PKT  NF  LC  E G          Y    FHRVI  F+IQGGD + 
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMG---------FYDNTIFHRVIPNFVIQGGDPT- 95

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG+SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 96  GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 155

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           F RV K M  + +I  V T   + PI D+ I   
Sbjct: 156 FARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  219 bits (559), Expect = 4e-71
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 17/174 (9%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
            R   +      +   G +  E++    PK  +NF AL               +YK   F
Sbjct: 10  GRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIF 58

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTN 116
           H+ IKGF+IQGGD + G G GGESIYG  F+DE + ELK++R+G+LSMA+ G    PNTN
Sbjct: 59  HKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTN 117

Query: 117 GSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           GSQFFIT +    L+G++V+FG++I G   + ++E+  +  +  PI ++ I D 
Sbjct: 118 GSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  219 bits (560), Expect = 5e-71
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 23/165 (13%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D+ P+  ++F  LC  +           ++    FHR I+ FMIQGG    
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAEL 64

Query: 78  GD----GTGGESIY-------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTT 125
                     +S         G  FEDE +  L H+  G+LSMAN G ++N S+FFIT  
Sbjct: 65  RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124

Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
              HL+ KH +FGRV+ G+ V+R  E + T   D P+    + + 
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI 169

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  214 bits (548), Expect = 9e-70
 Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q GD + 
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT- 57

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SI+G KFEDE +  LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 58  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FG+VI G+  +  +E +   +    P+ DV I D 
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  209 bits (535), Expect = 2e-67
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+++   PK   NF  LC   +          +Y    FHRV+ GF++QGGD + 
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC--LEA---------YYDNTIFHRVVPGFIVQGGDPT- 81

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G+GGESIYG  F+DE +  L+  R+G+++MANAG + NGSQFF T  R   L+ KH +
Sbjct: 82  GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141

Query: 137 FGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V    +  +  +  V   D++ P     I  C
Sbjct: 142 FGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  208 bits (531), Expect = 1e-66
 Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D+ PKT ENF  LC  +K          +Y G  FHR I+ F+IQGGD + 
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC--KKH---------YYDGTIFHRSIRNFVIQGGDPT- 76

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G GTGGES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++LD KH +
Sbjct: 77  GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FGRV+ G  V+ ++E+V +    D P  ++ I   
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDAT 171

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  205 bits (524), Expect = 8e-66
 Identities = 70/158 (44%), Positives = 88/158 (55%), Gaps = 11/158 (6%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKG-IGPNTGVPLH---YKGVRFHRVIKGFMIQGG 73
           G I + ++ +  PKT  NF  L  G K     N         Y G  FHRVI+GFMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 74  DISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
           D + G G GG    G KF DE + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ 
Sbjct: 93  DPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148

Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTIT 168
           +H +FG VI  +   VV +I    T  ND P   V I 
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  187 bits (477), Expect = 3e-58
 Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 30/171 (17%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + VE++    P    NF  LC   +G         +Y    FHRV+K F++QGGD + 
Sbjct: 31  GDLDVELWARECPLACRNFVQLC--LEG---------YYVNTIFHRVVKDFIVQGGDPT- 78

Query: 78  GDGTGG--ESIYGLKFEDE-NFELKHERKGMLSMANAGPN--------------TNGSQF 120
           G G GG   +  G  F+ E +  LK   +G++ +AN G +              TNG+QF
Sbjct: 79  GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138

Query: 121 FITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FIT  R   L+  + +FG+V    +  +     +  G  D P+    I   
Sbjct: 139 FITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSV 189

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  179 bits (456), Expect = 6e-56
 Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 1/154 (0%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +V++++  GNE + ++DYK A+  YR AL  LD    +E   E +   L +    ++ 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N S C L +GDL  A   +   ++  + N KALFR+ +A +A   +D A E  +  L+  
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 329 PNDGG-IKKELAVAKKKIHERREQEKKQYRKMFQ 361
           P     + +E+ +  ++  E++   +  Y KMFQ
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  173 bits (440), Expect = 3e-53
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +   IK  GNE +KK +   A+ KY++AL +     E +  D+      +  +     
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNL 92

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N + C  K  D   A+      ++   +NVKAL++ G A M    ++ A E+  KA  L 
Sbjct: 93  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152

Query: 329 PNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
           PN+  I+    +   K+ E R+++K  +  MF 
Sbjct: 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  174 bits (443), Expect = 6e-52
 Identities = 46/245 (18%), Positives = 106/245 (43%), Gaps = 14/245 (5%)

Query: 127 TSHLDGKHVVF-----GRVIKGMGV-VRSIEH----VMTGDNDCPIADVTITDCGEIPEG 176
            +  + + +        + + G+ + V S++     ++    +             +P  
Sbjct: 87  DTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPM 146

Query: 177 ADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYR 236
           AD     +  +   + +      ++   +   + A D  K+ GN  +K++  + A+++Y 
Sbjct: 147 AD---LLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE 203

Query: 237 KALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296
            A+ Y+   +  +   + +       K+    N +AC +KL     A+      + + + 
Sbjct: 204 MAIAYMGDDFMFQLYGKYQDM-ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
           N KALFR+G+A   L  +D+A + F KA K  P+D  I++EL    ++     +++K+ Y
Sbjct: 263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322

Query: 357 RKMFQ 361
           + +F+
Sbjct: 323 KGIFK 327

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  172 bits (437), Expect = 4e-51
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 9/193 (4%)

Query: 169 DCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDY 228
           +  +IP  A+          +   +     +    E    +     +K  G  ++K+  Y
Sbjct: 110 EKFQIPPNAELKYELHLKSFEKAKESW---EMNSEEK---LEQSTIVKERGTVYFKEGKY 163

Query: 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288
           K AL +Y+K + +L+        +  K+ +LR        N + C LKL     A+    
Sbjct: 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA---SHLNLAMCHLKLQAFSAAIESCN 220

Query: 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348
            A+    +N K L R+G+A++A+ND + A   F+K L+L PN+   K +LAV +++I  +
Sbjct: 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280

Query: 349 REQEKKQYRKMFQ 361
             +EKK Y  MF+
Sbjct: 281 LAREKKLYANMFE 293

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  154 bits (392), Expect = 3e-46
 Identities = 56/172 (32%), Positives = 75/172 (43%), Gaps = 32/172 (18%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           VEL    G I +E+     PKT ENF      +KG         HY G  FHRVI GFMI
Sbjct: 6   VELHTNHGVIKLELDEAKAPKTVENFLNYV--KKG---------HYDGTIFHRVINGFMI 54

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTS 128
           QGG           +       +E N  LK++    ++MA    P++  +QFFI      
Sbjct: 55  QGGGFE-PGLKQKPT--DAPIANEANNGLKNDT-YTIAMARTNDPHSATAQFFINVNDNE 110

Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTIT 168
            L+          + VFG+V++G  +V  I+ V TG      D P  DV I 
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIE 162

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  151 bits (384), Expect = 3e-45
 Identities = 53/168 (31%), Positives = 72/168 (42%), Gaps = 27/168 (16%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V L    G I +E+     P + +NF        G          Y    FHRVI GFMI
Sbjct: 7   VLLTTSAGNIELELDKQKAPVSVQNFVDYV--NSG---------FYNNTTFHRVIPGFMI 55

Query: 71  QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSH 129
           QGG  +       +    +K E +N  L++ R G ++MA  A  ++  SQFFI     + 
Sbjct: 56  QGGGFT-EQMQQKKPNPPIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAF 112

Query: 130 LDG-----KHVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTIT 168
           LD       + VFG+V+KGM V   I  V T D     + P   V I 
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  151 bits (383), Expect = 5e-45
 Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 32/172 (18%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V      G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMI
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REG---------FYNNTIFHRVINGFMI 50

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTS 128
           QGG     +    +       ++E N  LK+ R G L+MA    P++  +QFFI      
Sbjct: 51  QGGG---FEPGMKQKATKEPIKNEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDND 106

Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTIT 168
            L+          + VF  V+ GM  V  I+ V TG +    D P  DV I 
Sbjct: 107 FLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  154 bits (391), Expect = 3e-43
 Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 193 DWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID 252
            +    +    +    +     +K  G  ++K   Y  A+ +Y K + +L++ +   G+ 
Sbjct: 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLS 305

Query: 253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN 312
           E +S +        F N + C LKL +   A+   + A+     N K L+R+G+A + +N
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN 365

Query: 313 DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
           + ++A   FEK L++ P +   + ++++ +KK  E  E++++ Y  MF+
Sbjct: 366 EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  127 bits (319), Expect = 1e-33
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 52/190 (27%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
           +    + +     P TA NF  L   E+           Y G+   R   GF++Q GD  
Sbjct: 187 DCVFRIVLDGYNAPVTAGNFVDLV--ERHF---------YDGMEIQRSD-GFVVQTGDPE 234

Query: 77  AGDGTG--------------------GESIYGLKFED-----ENFELKHERKGMLSMANA 111
                                         YG   E+         +     G ++MA  
Sbjct: 235 GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMARE 294

Query: 112 G--PNTNGSQFFI-------TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162
               ++  SQ F        T + ++ LDG++ VFG V      +  ++    GD    I
Sbjct: 295 EFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK---VGD---VI 348

Query: 163 ADVTITDCGE 172
             + +    E
Sbjct: 349 ESIQVVSGLE 358

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  103 bits (259), Expect = 4e-27
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 20/158 (12%)

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
             S P  P     TP       ++V+ ++  GNE +K  DY  AL  Y +AL        
Sbjct: 9   TVSGPGTPEPRPATPGA-----SSVEQLRKEGNELFKCGDYGGALAAYTQALGL------ 57

Query: 248 KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307
                     +  + ++ +  N +AC LKL D   A  +   A+     +VKAL+R+ QA
Sbjct: 58  ---------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108

Query: 308 YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345
              L  +D AV   ++ + LEP +   ++ L       
Sbjct: 109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  101 bits (255), Expect = 7e-27
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 18/136 (13%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           M  V+ +K  GN+     +   AL+ Y +A+                   L      +++
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAI------------------KLDPHNHVLYS 42

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N SA   K GD + A  D    +    D  K   R+  A   LN  + A  ++E+ LK E
Sbjct: 43  NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

Query: 329 PNDGGIKKELAVAKKK 344
            N+  +K+ L   + +
Sbjct: 103 ANNPQLKEGLQNMEAR 118

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  102 bits (255), Expect = 2e-26
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                   L  + +  + N S 
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSL 55

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 56  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115

Query: 333 GIKKELAVAKKKIHERREQE 352
             K +     K + ++  + 
Sbjct: 116 DAKMKYQECNKIVKQKAFER 135

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 99.7 bits (249), Expect = 8e-26
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 23/146 (15%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                  +     +  +TN + 
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAI------------------TRNPLVAVYYTNRAL 51

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 333 G-----IKKELAVAKKKIHERREQEK 353
                 I   L +AKKK     E+ +
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSIEERR 137

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 97.7 bits (244), Expect = 3e-25
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 18/131 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
              K  GNE++KK DY  A+R Y +A++                       + +++N +A
Sbjct: 14  QEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAA 55

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C  KL + + AL D +  +R     +K   R+    +A+ +   A  ++E AL+++P++ 
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 333 GIKKELAVAKK 343
             ++ +    +
Sbjct: 116 EAREGVRNCLR 126

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 97.1 bits (242), Expect = 1e-24
 Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 20/145 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           D +K  GN    +++Y  A+  Y +AL                  S+        +N +A
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQAL------------------SIAPANPIYLSNRAA 53

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
                G  + A  D E A        KA  R G A   + D   A E++EK ++ E N G
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 333 --GIKKELAVAKKKIHERREQEKKQ 355
              +K+ L   K+KI E     +  
Sbjct: 114 SDAMKRGLETTKRKIEEANRGAEPP 138

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 95.7 bits (239), Expect = 2e-24
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 18/135 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K  GNE  K ++++ A+  Y KA+                   L    +  F N +A
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAI------------------ELNPANAVYFCNRAA 54

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
              KLG+  GA+ D E A+       KA  R G A  +LN    AV  ++KAL+L+P++ 
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

Query: 333 GIKKELAVAKKKIHE 347
             K  L +A+ K+ E
Sbjct: 115 TYKSNLKIAELKLRE 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 93.8 bits (234), Expect = 1e-23
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GNE ++K DY  A++ Y +A++                       +++++N +A
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAA 58

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C  KL + + AL D E  ++     +K   R+  A  A+ D   A++ ++KAL L+ +  
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 333 GIKKELAVAKKK 344
                       
Sbjct: 119 EAADGYQRCMMA 130

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 90.4 bits (225), Expect = 2e-22
 Identities = 26/139 (18%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           +  ++ G E++ K D+  A++ Y + ++                       ++ ++N +A
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAA 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--N 330
              KL     A+ D   A+    + V+A  R+  A +A+ +  +A+E+ + A   +   N
Sbjct: 47  ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

Query: 331 DGGIKKELAVAKKKIHERR 349
           +G   +E+     K  ++R
Sbjct: 107 NGSSAREIDQLYYKASQQR 125

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 91.5 bits (227), Expect = 2e-21
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 23/148 (15%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                        +  +TN + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRAL 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND- 331
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 332 ----GGIKKELAVAKKKIHERREQEKKQ 355
                 I   L +AKKK     E+ +  
Sbjct: 107 LNFGDDIPSALRIAKKKRWNSIEERRIH 134

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 84.3 bits (209), Expect = 3e-20
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 29/148 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
              K  GN+ YKK+D+  AL+ Y KA                    L  T     TN +A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAK------------------ELDPTNMTYITNQAA 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKAL 325
              + GD        E A+  G +N        KA  R G +Y        A+  + K+L
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 326 KLEPNDGGIKKELAVAKKKIHERREQEK 353
                   + K+   A+K +   +EQE+
Sbjct: 107 AEHRTP-DVLKKCQQAEKIL---KEQER 130

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.7 bits (205), Expect = 7e-18
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
            ++ +     E  +   Y  A  KY   ++           +     S+ +   +     
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMK----------TE----PSVAEYTVRSKERI 278

Query: 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             C  K      A+      ++   DNV AL  + +AY+     D A++ +E A +   N
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 331 DGGIKKELAVAKKKIHERREQEKKQYRK 358
           D  I++ L  A++          KQ +K
Sbjct: 339 DQQIREGLEKAQR--------LLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 22/144 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
             + +   DY  A+    K L                   +    +++    + C +K G
Sbjct: 127 ALDAFDGADYTAAITFLDKILE------------------VCVWDAELRELRAECFIKEG 168

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           + + A+ D + A +   DN +A ++    Y  L D + ++    + LKL+ +        
Sbjct: 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228

Query: 339 AVAKKKIHERRE----QEKKQYRK 358
              KK               +Y  
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTD 252

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +         AL ++  A+                           +   +   L +G
Sbjct: 10  GKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMG 51

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
             K AL D    +    D   A  ++G   +    +D A + F+K LK  P++   K+  
Sbjct: 52  KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

Query: 339 AVAKKKIHERREQEK 353
           +   K    +R + +
Sbjct: 112 SQLVKADEMQRLRSQ 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G+   K+     A   ++K L+       ++   E +S  ++  + Q   + +       
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D   A+   +  +     + +    + + ++   +   A+   + A KL+ ++
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                   L  + +  + N S 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAI------------------ELNPSNAIYYGNRSL 48

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 49  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108

Query: 333 GIKKELAVAKKKIHERR 349
             K +     K + ++ 
Sbjct: 109 DAKMKYQECNKIVKQKA 125

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 17/148 (11%)

Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
            ++ +     E  +   Y  A  KY   ++           +     S+ +   +     
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMK----------TE----PSIAEYTVRSKERI 301

Query: 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             C  K      A+      ++   DNV AL  + +AY+     D A++ +E A +   N
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 331 DGGIKKELAVAKKKIHERREQEKKQYRK 358
           D  I++ L  A++     ++ +K+ Y K
Sbjct: 362 DQQIREGLEKAQR---LLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.9 bits (174), Expect = 9e-14
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 18/125 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +         AL ++  A+                           +   +   L +G
Sbjct: 33  GKKLLAAGQLADALSQFHAAV------------------DGDPDNYIAYYRRATVFLAMG 74

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
             K AL D    ++   D   A  ++G   +    +D A + F+K LK  P++   K+  
Sbjct: 75  KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134

Query: 339 AVAKK 343
           +   K
Sbjct: 135 SQLIK 139

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 22/144 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
               +   DY  A+    K L                 + LR+ +++       C +K G
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEV-----------CVWDAELRELRAE-------CFIKEG 191

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           + + A+ D + A +  +DN +A ++    Y  L D + ++    + LKL+ +        
Sbjct: 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251

Query: 339 AVAKKKIHERRE----QEKKQYRK 358
              KK               +Y  
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTD 275

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G+   K+     A   ++K L+       +    E +S  ++  + Q   + +      G
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D   A+   +  +     + +    + + ++   +   A+   + A KL+ ++
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%)

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
            L  G L  AL     A+    DN  A +R+   ++A+    AA+    K ++L+ +   
Sbjct: 36  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95

Query: 334 IKKELAVAKKK 344
            + +      K
Sbjct: 96  ARLQRGHLLLK 106

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 26/138 (18%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
            + K  GN  YK++D++ A   Y KA+                   L  +    + N +A
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAI------------------ELDPSNITFYNNKAA 50

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKAL 325
              +       +   E A+  G +         KA+ R G A+   ND+  AV+ F ++L
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 326 KLEPNDGGIKKELAVAKK 343
               +   + K++   +K
Sbjct: 111 SEFRDP-ELVKKVKELEK 127

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 24/124 (19%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           M+  +  K  GN  +K+  Y+ A+  Y + +                  + +      ++
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLI------------------TAQPQNPVGYS 42

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL------FRQGQAYMALNDVDAAVESFE 322
           N +   +KLG+   A+   +  +R               +R   A  A+  V   V   +
Sbjct: 43  NKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102

Query: 323 KALK 326
           +  +
Sbjct: 103 ELPE 106

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 20/161 (12%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           LD+   +         S++  G   + K D   A    +KA+                  
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------------- 266

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                +   +   +       D        + A++   +N    + +GQ    L + D A
Sbjct: 267 ---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
            + F+KA +L+P +     +LA    +   + +  +  + +
Sbjct: 324 GKDFDKAKELDPENIFPYIQLACLAYRE-NKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN+ ++ + Y  A++ Y  AL                     K     ++N SAC + +G
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALEL-------------------KEDPVFYSNLSACYVSVG 53

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKE 337
           DLK  +  +  A+    D  K L R+  A   L     A+      +L  + ND  I+  
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113

Query: 338 LAVAKKKIHERREQEK 353
           L     K    + +EK
Sbjct: 114 LERNLNKQAMSKLKEK 129

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 18/137 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  ++  Q+Y  A + + KA                    L       +   +    +  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE------------------LDPENIFPYIQLACLAYREN 352

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
                      A R   +  +      +     ND D A++ ++ A++LE    GI   +
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412

Query: 339 AVAKKKIHERREQEKKQ 355
           A    K          +
Sbjct: 413 APLVGKATLLTRNPTVE 429

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 27/152 (17%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-- 276
                 K D+  AL++Y  A+                   L      I+   +    K  
Sbjct: 379 AEILTDKNDFDKALKQYDLAIE------------------LENKLDGIYVGIAPLVGKAT 420

Query: 277 -------LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                  + +   A    E A +    + +A     Q  +   D+D A+  FE++  L  
Sbjct: 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480

Query: 330 NDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
                 + +  A+    ++R +      K  Q
Sbjct: 481 TMEEKLQAITFAEAAKVQQRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 6/147 (4%)

Query: 185 FNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244
           F D D+    P +L   P +                  +     ++    Y ++      
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA--- 186

Query: 245 CWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304
               + +  G S+  +++         +        +  L       +  +    +L   
Sbjct: 187 ---DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243

Query: 305 GQAYMALNDVDAAVESFEKALKLEPND 331
           G      ND   A E  +KA++L P  
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRV 270

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 18/126 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G E++ K D+  A++ Y + ++                       ++ ++N +A   KL 
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLM 187

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A+ D   A+    + V+A  R+  A +A+ +  +A+E+ + A   +          
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 247

Query: 339 AVAKKK 344
            + +  
Sbjct: 248 EIDQLY 253

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 33/146 (22%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN+ YK + +  A+  Y KA                              N +A + + G
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWEL-------------------HKDITYLNNRAAAEYEKG 52

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------G 332
           + + A+     A+  G +         +++  + +    +   +K ++            
Sbjct: 53  EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA 112

Query: 333 GIKKELAVAKKKIHERREQEKKQYRK 358
            I  +L           E+E K+   
Sbjct: 113 DILTKL--------RNAEKELKKAEA 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 19/113 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                +  +    L   +K + Y                     KS     ++    KL 
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY-------------------YQKSLTEHRTADILTKLR 119

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           + +  L   E       +  +    +G+ Y   +D   AV+++ + +K  P D
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 2/140 (1%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +   +      A+  +R+ +  L+I    E           +  S++ T  +    K  
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIA-LNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +   A L  +  ++   +NV  L    +  +       A+  +EK L+LE ++      L
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 339 AVAKKKIHERREQEKKQYRK 358
                   E+ +++ +   K
Sbjct: 129 GNYYYLTAEQEKKKLETDYK 148

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 19/123 (15%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N VD ++        +   K ALR Y K L                   L          
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKIL------------------QLEADNLAANIF 127

Query: 270 -SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
             +   L     K  L      +        A +R G + +     + A  S +K +   
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187

Query: 329 PND 331
           P+ 
Sbjct: 188 PST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +V  + ++  A +       AV  F + + L  + 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR 37

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 64.4 bits (157), Expect = 8e-13
 Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 31/169 (18%)

Query: 186 NDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245
           +DG +          + + L             G   Y+   +  A + ++         
Sbjct: 2   SDGGTLAML---RGLSEDTLEQLYA-------LGFNQYQAGKWDDAQKIFQALCM----- 46

Query: 246 WEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305
                        L    ++ F    AC+  LG  + AL    +      +  +  F   
Sbjct: 47  -------------LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93

Query: 306 QAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKKKIHERREQ 351
           + ++ L D+D A   F  A  L         +        + +  R+++
Sbjct: 94  ECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 28/157 (17%)

Query: 175 EGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRK 234
           E     + +  N G +  D         + +    +       +  + Y K   + A   
Sbjct: 9   ESISTAVIDAINSGATLKD---INAIPDDMMDDIYS-------YAYDFYNKGRIEEAEVF 58

Query: 235 YRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294
           +R    Y                             +A        + A      A   G
Sbjct: 59  FRFLCIY------------------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++   +F  GQ  + L     A E FE  ++   ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   + K D + A+  ++ AL  +            K+ S  K  +  + N      KL 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVK-----------KTQSNEKPWAATWANLGHAYRKLK 530

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A+      +    ++          Y+       A+    ++L + PN+      L
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590

Query: 339 AVAKKK 344
             A ++
Sbjct: 591 KRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 31/138 (22%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR---YLDICWEKEGIDEG 254
           ++         +          +  + +  +   L    K L    Y    +        
Sbjct: 298 INGLEKSSDLLLC-------KADTLFVRSRFIDVLAITTKILEIDPYNLDVYP------- 343

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
                            A   + G+     L +   +    +        G  Y+ +N +
Sbjct: 344 --------------LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389

Query: 315 DAAVESFEKALKLEPNDG 332
             A   F K+  ++P  G
Sbjct: 390 SEARRYFSKSSTMDPQFG 407

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 19/132 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALR---------------YLDICWEKEGIDEGKSSSLRKTK 263
           G  +    ++  A   Y++AL                +L    E+  +    + S    +
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 264 SQIFT----NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
              F          K    D      D   ++   + +   L  +       +     + 
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 320 SFEKALKLEPND 331
              K L+++P +
Sbjct: 327 ITTKILEIDPYN 338

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 18/124 (14%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           F +    + ++  A+  Y  A R                  L +     +       ++L
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAAR------------------LFQGTHLPYLFLGMQHMQL 454

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337
           G++  A    + +      +   L   G      +D+  A+  F+ AL L       +K 
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514

Query: 338 LAVA 341
            A  
Sbjct: 515 WAAT 518

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 30/166 (18%)

Query: 196 ADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR---------YLDICW 246
           + L +   + +  ++  D ++++ ++   +Q YK A     K L          +L   +
Sbjct: 68  SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVY 127

Query: 247 EKEG-----IDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL--------------LDT 287
              G             L    S     ++ C +KL D +GAL                 
Sbjct: 128 CCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187

Query: 288 EFAMRDGDDNVKA--LFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +  M+DG   ++A   + +GQ Y  L++ D A E +++AL ++   
Sbjct: 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 9/132 (6%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   ++  ++K A + +  AL         E I    +         +  N      KL 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDAL---------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               AL     A+     N       G  +  + + + AV+ F  AL L  +D      L
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310

Query: 339 AVAKKKIHERRE 350
               +      E
Sbjct: 311 GHCIEMYIGDSE 322

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 25/127 (19%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALR---YLDICWEKEGIDEGKSSSLRKTKSQI 266
             +D +      HY   D+KM  +     +    +   C                     
Sbjct: 20  ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP------------------- 60

Query: 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL-NDVDAAVESFEKAL 325
                   ++L         +   +     N  + F  G  Y+ + +  + A     KA 
Sbjct: 61  --VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT 118

Query: 326 KLEPNDG 332
            LE   G
Sbjct: 119 TLEKTYG 125

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 12/131 (9%)

Query: 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287
           Y M   K   A RYL            K+++L KT    +           +   A+   
Sbjct: 100 YLMVGHKNEHARRYLS-----------KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148

Query: 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347
             A +        +   G  Y   N+   A   F +AL + P D  +  E+ V   +  E
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE 208

Query: 348 RREQEKKQYRK 358
            +  E K +  
Sbjct: 209 WKTAE-KWFLD 218

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 18/115 (15%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           +G+    + ++  A+  Y  A +                  L K                
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQ------------------LMKGCHLPMLYIGLEYGLT 172

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
            + K A      A+    ++   +   G       +   A + F  AL+     G
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 8/146 (5%)

Query: 219 GNEHYKKQDYKMALRKYRKALRY---LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275
                 + D+  A+++Y  A R     +      G   GK++ L        ++    +L
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL-----ARQSSQDPTQL 439

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
                  A+     A      + +A     Q  + +  +D A+E FE +  L        
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499

Query: 336 KELAVAKKKIHERREQEKKQYRKMFQ 361
           +    A+    ++R +         +
Sbjct: 500 QATTFAEAAKIQKRLRADPIISAKME 525

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 20/161 (12%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           L     +     NA  ++   G  H+ K +   A    ++++                  
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---------------- 272

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                    +   +       + +      + A+    +     + +GQ Y  L D   A
Sbjct: 273 ---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
            E F+KA  L P +     +LA    K   +  + +  + +
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQ-GKFTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN  +  +++  A++ Y+ A+                   L   +   ++N SAC +  G
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE------------------LDPNEPVFYSNISACYISTG 73

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK-- 336
           DL+  +  T  A+    D+ KAL R+  A  +L +   A+            DG   +  
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133

Query: 337 -ELAVAKKKIHERREQEKKQYRKMFQ 361
            E  + K+ +    E   K   +  Q
Sbjct: 134 LERNLNKQAMKVLNENLSKDEGRGSQ 159

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 18/143 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  ++  QDYK A   ++KA                   SL       +   +    K G
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQ------------------SLNPENVYPYIQLACLLYKQG 358

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               +               +      +      D D A++ ++ A +LE     I   +
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418

Query: 339 AVAKKKIHERREQEKKQYRKMFQ 361
                K      Q  +   ++ +
Sbjct: 419 GPLIGKATILARQSSQDPTQLDE 441

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                 K++ +   + ++KA+                   L       + +       L 
Sbjct: 283 ALTLADKENSQEFFKFFQKAV------------------DLNPEYPPTYYHRGQMYFILQ 324

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           D K A  D + A     +NV    +             +   F +     P    +    
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A          +   KQY  
Sbjct: 385 AEILTDR-GDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 14/112 (12%), Positives = 27/112 (24%), Gaps = 16/112 (14%)

Query: 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279
           +      +Y  A      AL+ L                   T       +         
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYS----------------ATDEGYLVANDLLTKSTDM 224

Query: 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               L          ++   AL   G  +   N++  A    ++++ L P  
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 14/105 (13%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
            +        +                  S S R+  +    N         +   A+  
Sbjct: 2   SHMNGEPDIAQLKG--------------LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKY 47

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++A+    +           Y++  D++  +E   KAL+++P+ 
Sbjct: 48  YQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 19/174 (10%), Positives = 48/174 (27%), Gaps = 31/174 (17%)

Query: 183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
              + G +        + + + L       + +       Y+   Y+ A   ++      
Sbjct: 2   PLGSGGGTIAML---NEISSDTL-------EQLYSLAFNQYQSGXYEDAHXVFQALCV-- 49

Query: 243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302
                           L    S+ F    AC+  +G    A+    +         +  F
Sbjct: 50  ----------------LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93

Query: 303 RQGQAYMALNDVDAAVESFEKALKLE---PNDGGIKKELAVAKKKIHERREQEK 353
              +  +   ++  A      A +L    P    +   ++   + I  ++E + 
Sbjct: 94  HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 30/167 (17%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +               +  +  L    +A             
Sbjct: 331 PVLCQAHGLTPQQVVAIAS-------HDGGKQALETVQRLLPVLCQAHG----------- 372

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     + V A+        AL
Sbjct: 373 -------LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 425

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             V   +    +A  L P            +  +     Q   +   
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL-SRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 16/140 (11%), Positives = 31/140 (22%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                  +  +  L    +A                    L   +     ++   K  L 
Sbjct: 283 SGGKQALETVQRLLPVLCQAHG------------------LTPQQVVAIASNGGGKQALE 324

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            ++  L     A       V A+        AL  V   +    +A  L P         
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384

Query: 339 AVAKKKIHERREQEKKQYRK 358
              K+ +   +        +
Sbjct: 385 GGGKQALETVQRLL-PVLCQ 403

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                  +  +  L    +A                    L   +     +    K  L 
Sbjct: 113 DGGKQALETVQRLLPVLCQAHG------------------LTPEQVVAIASHDGGKQALE 154

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            ++  L     A     + V A+   G    AL  V   +    +A  L P         
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214

Query: 339 AVAKKKIHERREQEKKQYRK 358
              K+ + E  ++      +
Sbjct: 215 GGGKQAL-ETVQRLLPVLCQ 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G      +  +  L    +A                    L   +     +    K  L 
Sbjct: 385 GGGKQALETVQRLLPVLCQAHG------------------LTPEQVVAIASHDGGKQALE 426

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++  L     A       V A+   G    AL  + A +   + AL    ND
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 24/154 (15%), Positives = 39/154 (25%), Gaps = 36/154 (23%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +        G      +  +  L    +A             
Sbjct: 161 PVLCQAHGLTPEQVVAIAS-------NGGGKQALETVQRLLPVLCQAHG----------- 202

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A       V A+   G    AL
Sbjct: 203 -------LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKEL 338
             V   +    +A  L P          G K+ L
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQAL 289

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 14/137 (10%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
                    A+  +R AL              G   +L   +     +    K  L  ++
Sbjct: 43  KRGGVTAVEAVHAWRNALT-------------GAPLNLTPEQVVAIASHDGGKQALETVQ 89

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
             L     A       V A+        AL  V   +    +A  L P            
Sbjct: 90  RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 149

Query: 342 KKKIHERREQEKKQYRK 358
           K+ + E  +       +
Sbjct: 150 KQAL-ETVQALLPVLCQ 165

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G      +  +  L    +A                    L   +     ++S  K  L 
Sbjct: 249 GGGKQALETVQRLLPVLCQAHG------------------LTPQQVVAIASNSGGKQALE 290

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            ++  L     A       V A+   G    AL  V   +    +A  L P         
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 339 AVAKKKIHERREQEKKQYRK 358
              K+ + E  ++      +
Sbjct: 351 DGGKQAL-ETVQRLLPVLCQ 369

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 36/161 (22%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 654 PVLCQAHGLTPDQVVAIASN-------GGGKQALETVQRLLPVLCQAHG----------- 695

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L + +     +++  K  L  ++  L     A     D V A+   G    AL
Sbjct: 696 -------LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 748

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKELAVAKKKI 345
             V   +    +A  L P          G K+ L   ++ +
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 29/140 (20%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q     P+++    +               +  +  L    +A             
Sbjct: 247 PVLCQAHGLPPDQVVAIASN-------IGGKQALETVQRLLPVLCQAH------------ 287

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+        AL
Sbjct: 288 ------GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +A  L P+ 
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 6e-09
 Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 36/154 (23%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 552 PVLCQAHGLTPDQVVAIASN-------GGGKQALETVQRLLPVLCQAHG----------- 593

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L + +     ++   K  L  ++  L     A       V A+        AL
Sbjct: 594 -------LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKEL 338
             V   +    +A  L P+        GG K+ L
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 23/167 (13%), Positives = 41/167 (24%), Gaps = 21/167 (12%)

Query: 192 PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
                 L   P  L+     V +I          +  +  L    +A             
Sbjct: 174 HASRNALTGAPLNLT--PAQVVAIASNNGGKQALETVQRLLPVLCQAHG----------- 220

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+        AL
Sbjct: 221 -------LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             V   +    +A  L P+           K+ + E  ++      +
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQAL-ETVQRLLPVLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 20/161 (12%), Positives = 37/161 (22%), Gaps = 32/161 (19%)

Query: 192 PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
           P        T  ++    +               +  +  L    +A             
Sbjct: 586 PVLCQAHGLTQVQVVAIASN-------IGGKQALETVQRLLPVLCQAHGL---------- 628

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                      +     +    K  L  ++  L     A     D V A+   G    AL
Sbjct: 629 --------TPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKELAVAKKKI 345
             V   +    +A  L            G K+ L   ++ +
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLL 721

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 30/167 (17%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +               +  +  L    +A             
Sbjct: 450 PVLCQTHGLTPAQVVAIASH-------DGGKQALETVQQLLPVLCQAHG----------- 491

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     D V A+   G    AL
Sbjct: 492 -------LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 544

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             V   +    +A  L P+           K+ + E  ++      +
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL-ETVQRLLPVLCQ 590

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290
           A+   R AL    +             +L   +     +++  K  L  ++  L     A
Sbjct: 172 AVHASRNALTGAPL-------------NLTPAQVVAIASNNGGKQALETVQRLLPVLCQA 218

Query: 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-------GGIKKEL 338
                  V A+        AL  +   +    +A  L P+         G K+ L
Sbjct: 219 HGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 29/140 (20%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 281 PVLCQAHGLTPDQVVAIASH-------GGGKQALETVQRLLPVLCQAHG----------- 322

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+   G    AL
Sbjct: 323 -------LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +A  L P+ 
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 20/140 (14%), Positives = 35/140 (25%), Gaps = 30/140 (21%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 349 PVLCQAHGLTPDQVVAIAS-------NGGGKQALETVQRLLPVLCQAHG----------- 390

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     D V A+        AL
Sbjct: 391 -------LTPDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 442

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +   L P  
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 19/149 (12%), Positives = 36/149 (24%), Gaps = 19/149 (12%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           + V +I   G      +  +  L    +A                    L   +     +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHG------------------LTPDQVVAIAS 570

Query: 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
           +   K  L  ++  L     A       V A+        AL  V   +    +A  L P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630

Query: 330 NDGGIKKELAVAKKKIHERREQEKKQYRK 358
                       K+ +   +        +
Sbjct: 631 AQVVAIASHDGGKQALETVQRLL-PVLCQ 658

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 12/110 (10%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
                  K AL   ++ L  L            +   L      +   S+  K  L  ++
Sbjct: 874 IASNIGGKQALETVQRLLPVLC-----------QDHGL-TLDQVVAIASNGGKQALETVQ 921

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             L           D V A+        AL  V   +    +   L PN 
Sbjct: 922 RLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQ 971

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-- 332
            +      AL     A+        A    G+      D   A +++E  L    + G  
Sbjct: 30  AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89

Query: 333 GIKKELAVAKKKIHERREQEKKQYR 357
            + KEL V  +++  R +  +  + 
Sbjct: 90  QVVKELQVFLRRL-AREDALEHHHH 113

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
           DN+   F  G+ Y      DAA+     AL  +P      K L    +     R   ++ 
Sbjct: 17  DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQA 75

Query: 356 YRK 358
           +  
Sbjct: 76  WES 78

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 18/76 (23%), Positives = 27/76 (35%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LKL +L  A L  E   +   +  +A    G           A+ +   A  L+P D  +
Sbjct: 28  LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87

Query: 335 KKELAVAKKKIHERRE 350
              LAV+    H    
Sbjct: 88  HAALAVSHTNEHNANA 103

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    K  +   A   +    +                      + + + +    + +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENE 65

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
               A++    A      ++        ++   ++ +AA+ S    L  +P 
Sbjct: 66  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             +    +G + + L ++  A  +FE   + EP  
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPER 50

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 26/161 (16%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           L+  P   +   N         +   ++   + AL  Y++A+R                 
Sbjct: 36  LEVFPEFAAAHSN-------LASVLQQQGKLQEALMHYKEAIR----------------- 71

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
            +  T +  ++N      ++ D++GAL     A++       A       +    ++  A
Sbjct: 72  -ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
           + S+  ALKL+P+       LA   + +        ++ +K
Sbjct: 131 IASYRTALKLKPDFPDAYCNLAHCLQIVC-DWTDYDERMKK 170

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350
            +  +L           +++ AV  + KAL++ P        LA   ++  + +E
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 15/139 (10%), Positives = 38/139 (27%), Gaps = 18/139 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +      D        ++ L                   L     +        +    
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLA------------------LHPGHPEAVARLGRVRWTQQ 71

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A +  + A     ++       G A       +AA  ++ +A +L P +  I  +L
Sbjct: 72  RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131

Query: 339 AVAKKKIHERREQEKKQYR 357
              ++++ + R  +    +
Sbjct: 132 LNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337
            D    LL    A+R    +  A      A + + D  A   + ++ L L P        
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 338 LAVAKKKIHERREQEKKQYRK 358
           L   +     R  +     ++
Sbjct: 63  LGRVRWTQQ-RHAEAAVLLQQ 82

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 19/132 (14%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
           D    L + R A+R                   R      +   +  +L +GD     + 
Sbjct: 4   DGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMA 45

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346
            +  +     + +A+ R G+          A    ++A    P   GI   L  A +   
Sbjct: 46  VQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105

Query: 347 ERREQEKKQYRK 358
            + E     Y +
Sbjct: 106 -QAEAAAAAYTR 116

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    KK    +A+++Y+ A+                      T+  ++    +     G
Sbjct: 81  GKILMKKGQDSLAIQQYQAAV------------------DRDTTRLDMYGQIGSYFYNKG 122

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +   A+   E  +R    + K  +  GQAY    +   A  SF K L+L+PN 
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 14/130 (10%), Positives = 35/130 (26%), Gaps = 21/130 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  +K  +Y  A+  + K                    + +     I+   + C  +L 
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLE------------------AKKYNSPYIYNRRAVCYYELA 51

Query: 279 DLKGALLDTEF---AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
               A  D E     +             G+  M       A++ ++ A+  +     + 
Sbjct: 52  KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111

Query: 336 KELAVAKKKI 345
            ++       
Sbjct: 112 GQIGSYFYNK 121

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 27/156 (17%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----------YLDICWEKEG-IDE-----GKSSSLRKT 262
           G+  Y K ++ +A++   K +R           L   +       +      K   L+  
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 263 KSQIFTNSSACKLKLGDL-----------KGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
               +   +                    K   +      +  D+ ++A       Y   
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347
            D   A  +++  L L+P +      L +  +  H 
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345
           N    FR        N+   A+E F K    + N   I    AV   ++
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL 50

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
               + +  L   +  +R    N +     G+ Y+  ND   ++ ++ +AL+L   +  +
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 335 KKELAVA 341
              LA  
Sbjct: 81  YAALATV 87

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 26/162 (16%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           +   P     W          G  +  + DY  +L  YR+AL+             G+++
Sbjct: 37  IRANPQNSEQWAL-------LGEYYLWQNDYSNSLLAYRQALQL-----------RGENA 78

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
            L    + +    +                + A+    + + AL           +   A
Sbjct: 79  ELYAALATVLYYQA----SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134

Query: 318 VESFEKALKLEPND---GGIKKELAVAKKKIHERREQEKKQY 356
           +E ++K + L         + + + +AK     R + E   +
Sbjct: 135 IELWQKVMDLNSPRINRTQLVESINMAKLLQ-RRSDLEHHHH 175

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 19/158 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALR--------------YLDICWEKEGIDEGKSSSLRKTKS 264
           G   Y     K+A        +                    EK+  +  K    +  K 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 265 QIFTNSSACKL----KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES 320
           Q   N     L    +   ++    D        +   +  F  G+ Y++L D+D+A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 321 FEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
           F+ A+    ++    +   +    +  + + +  +  +
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLL-GQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 20/142 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +       +A   + +AL                   +R    ++F        + G
Sbjct: 50  GVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAG 91

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +   A    +  +        A   +G A         A +      + +PND      L
Sbjct: 92  NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151

Query: 339 AVAKKKIHERREQE--KKQYRK 358
            +A++K+ E++ +E  K+ + K
Sbjct: 152 YLAEQKLDEKQAKEVLKQHFEK 173

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 19/126 (15%)

Query: 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ 265
           SW  +     +V           ++ L +  + L                 +     ++Q
Sbjct: 4   SWRKS-----EVLAVPLQPTLQQEVILARMEQILA--------------SRALTDDERAQ 44

Query: 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325
           +          LG    A  D   A+    D  +     G       + DAA E+F+  L
Sbjct: 45  LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104

Query: 326 KLEPND 331
           +L+P  
Sbjct: 105 ELDPTY 110

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  Y+  D++ A R   +  R                       + +    S+   +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR------------------QEPDNTGVLLLLSSIHFQCR 47

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            L  +   +  A++      +A    G  Y     +  A+E +  AL+L+P+       L
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A A        E   + Y  
Sbjct: 108 AAALVAA-GDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 18/129 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            N   +K     A   Y  ALR                  L  T +    N +  K + G
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR------------------LCPTHADSLNNLANIKREQG 319

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +++ A+     A+    +   A             +  A+  +++A+++ P        +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 339 AVAKKKIHE 347
               K++ +
Sbjct: 380 GNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN + ++   + A+  YR ALR                  L+      + N +A  +  G
Sbjct: 74  GNVYKERGQLQEAIEHYRHALR------------------LKPDFIDGYINLAAALVAAG 115

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D++GA+     A++   D        G    AL  ++ A   + KA++ +PN 
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           +    + +  + H++ +    +      A++                       ++ ++N
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------QNPLLAEAYSN 72

Query: 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                 + G L+ A+     A+R   D +        A +A  D++ AV+++  AL+  P
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 330 NDGGIKKELAVAKKKIHERREQEKKQYRK 358
           +   ++ +L    K +  R E+ K  Y K
Sbjct: 133 DLYCVRSDLGNLLKAL-GRLEEAKACYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN        + A   Y KA+                    +   +  ++N        G
Sbjct: 142 GNLLKALGRLEEAKACYLKAIE------------------TQPNFAVAWSNLGCVFNAQG 183

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           ++  A+   E A+    + + A    G         D AV ++ +AL L PN   +   L
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A    +     +     YR+
Sbjct: 244 ACVYYEQ-GLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN   + + +  A+  Y +AL                  SL    + +  N +    + G
Sbjct: 210 GNVLKEARIFDRAVAAYLRAL------------------SLSPNHAVVHGNLACVYYEQG 251

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            +  A+     A+        A      A      V  A + +  AL+L P        L
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A  K++     E+  + YRK
Sbjct: 312 ANIKREQ-GNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
              +Y++    +A+  YR+A+                   L+      + N +    + G
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAI------------------ELQPHFPDAYCNLANALKEKG 285

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            +  A      A+R    +  +L           +++ AV  + KAL++ P        L
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A   ++   + ++    Y++
Sbjct: 346 ASVLQQ-QGKLQEALMHYKE 364

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   D + A++ Y  AL+                         + ++       LG
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQ------------------YNPDLYCVRSDLGNLLKALG 149

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            L+ A      A+    +   A    G  + A  ++  A+  FEKA+ L+PN       L
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209

Query: 339 AVAKKKIHERREQEKKQYRK 358
               K+     ++    Y +
Sbjct: 210 GNVLKEA-RIFDRAVAAYLR 228

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 17/144 (11%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   +Y  A    R+A+        +E  D           +      +     L 
Sbjct: 18  AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH------AGFDAFCHAGLAEALAGLR 71

Query: 279 DLKGALLDTEFAMR-----------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
               AL   + A+            +G   + A++ +  A   L     A+  F+K +++
Sbjct: 72  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131

Query: 328 EPNDGGIKKELAVAKKKIHERREQ 351
                G         +   +R  Q
Sbjct: 132 IEERKGETPGKERMMEVAIDRIAQ 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 209 MNAVDSIKVF--GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI 266
           M+ V++I ++  G     K+D+K AL  +                            S+I
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQ---------------------DPHSRI 39

Query: 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
             N       L ++  A      ++        A F++G  Y      D A++  ++AL 
Sbjct: 40  CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99

Query: 327 -LEPND 331
            L  N 
Sbjct: 100 QLRGNQ 105

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 14/111 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +Y+ + Y +A++  ++AL  L      +    G    L     ++  N +    K  
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA--CEVLYNIAFMYAKKE 135

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
           + K A      A     +               + +D A+E   K    EP
Sbjct: 136 EWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 21/152 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
               + K   + AL   RKA          E I +  +          + N +     +G
Sbjct: 58  AYLKHLKGQNEAALECLRKAE---------ELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 279 DLKGAL--------LDTEFAMRDGDDNVKALFRQGQAYMAL--NDVDAAVESFEKALKLE 328
            L            +  +F+     ++ +    +G   +    N  + A   FEKAL+ +
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 329 PNDGGIKKELAVAKKKIHERREQEK--KQYRK 358
           P +      LA+A  ++      +      R+
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA-KKKIHERREQEKK 354
                L    + Y   ++ D A+E  +KAL+  PN+  +  ++    + K+ +     + 
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304

Query: 355 QYR 357
              
Sbjct: 305 GMY 307

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEF 289
           + +      Y+D       + E  SS  R    ++       +LK G    + A +  E 
Sbjct: 107 MGRLSDVQIYVDKVKH---VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEK 163

Query: 290 AMRDGDDNVKALFRQGQAYMALND---VDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346
           A+     N +       A   L++      A++   +A++L P++  +K  LA+   K+ 
Sbjct: 164 ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR 223

Query: 347 ERREQE---KKQYRK 358
           E  E+E   +K   +
Sbjct: 224 EEGEEEGEGEKLVEE 238

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 21/124 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----------YLDICWEKEGIDEGKSSSLRKTKSQIFT 268
              + +K +   A+   +KAL            +  C+  +                   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE---------- 303

Query: 269 NSSACKLKLGDLKG-ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
           N    K KL +L G A+   + A    D+  +        +   +  + A   F+K    
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 328 EPND 331
           E   
Sbjct: 364 ELTP 367

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 18/127 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGI---------DEGKS-----SSLRKTKS 264
            + H     Y+ A   ++K          K+ +          + K          +   
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG-V 399

Query: 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324
           +I   S   +     L+      +  +     + +AL            +  A E  E+ 
Sbjct: 400 KINQKSREKEKMKDKLQKIA---KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456

Query: 325 LKLEPND 331
           L+     
Sbjct: 457 LESGSLI 463

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LK  +   AL   E  +    D V   +  G+ Y  L+  D A++++ + +++   +G  
Sbjct: 18  LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77

Query: 335 K--KELAVAKKKI 345
           K   EL  AK K 
Sbjct: 78  KDLSELQDAKLKA 90

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 9/63 (14%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
           ++    +   Q ++  ++   A+  FE+ ++ +P+  G    L    +++ +R +     
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL-DRTDDAIDT 63

Query: 356 YRK 358
           Y +
Sbjct: 64  YAQ 66

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +  K+ YK A   + KALR                         +F       +KL 
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALR------------------AGMENGDLFYMLGTVLVKLE 139

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             K AL   + A+   +++ +A F+ G        +D A+  F    + +P  
Sbjct: 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    K +  K+AL   ++A+                   L +  ++       C    G
Sbjct: 132 GTVLVKLEQPKLALPYLQRAV------------------ELNENDTEARFQFGMCLANEG 173

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            L  AL            +  A +  G  Y    + + A+E  +KA+ ++P+ 
Sbjct: 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.2 bits (108), Expect = 9e-06
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            N      + + AL  Y KAL                   L  + +  +  +    +   
Sbjct: 64  ANLLSSVNELERALAFYDKAL------------------ELDSSAATAYYGAGNVYVVKE 105

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             K A    E A+R G +N    +  G   + L     A+   ++A++L  ND
Sbjct: 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 25/127 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                +  DY+ A   + KA+                     K  +  + N +     + 
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAI------------------EENKEDAIPYINFANLLSSVN 71

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------- 331
           +L+ AL   + A+        A +  G  Y+       A + FEKAL+    +       
Sbjct: 72  ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131

Query: 332 GGIKKEL 338
           G +  +L
Sbjct: 132 GTVLVKL 138

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
           + GD + A      A+ +  ++            ++N+++ A+  ++KAL+L+ +     
Sbjct: 35  EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94

Query: 336 KELAVAKKKIHERREQEKKQYRK 358
                      E  ++ K  + K
Sbjct: 95  YGAGNVYVVK-EMYKEAKDMFEK 116

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 16/114 (14%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           +G   Y+++ Y+ A ++  +A +                 +L   +S++F N     L++
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQ----------------DTLYPERSRVFENLGLVSLQM 154

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
                A    E ++R   +                +   A + ++   +    +
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
           K+   R      +       L+ G+ + A +    A+     +  A       +    + 
Sbjct: 28  KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP 87

Query: 315 DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             A E + KAL  +  +  +         +  +R E+  ++  +
Sbjct: 88  KLADEEYRKALASDSRNARVLNNYGGFLYEQ-KRYEEAYQRLLE 130

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 21/142 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                 + + K+A  +YRKAL                  +     +++  N      +  
Sbjct: 78  AVVFQTEMEPKLADEEYRKAL------------------ASDSRNARVLNNYGGFLYEQK 119

Query: 279 DLKGALLDTEFAMRDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336
             + A      A +D    +  +     G   + +     A E FEK+L+L  N   +  
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179

Query: 337 ELAVAKKKIHERREQEKKQYRK 358
           E+A    K        ++ Y  
Sbjct: 180 EMADLLYK-EREYVPARQYYDL 200

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 26/164 (15%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRK-------YRKALRYLDICWEKEGIDEGKSSSLRKT 262
             VD +  F + +++    + A RK         K L+ ++           +     + 
Sbjct: 52  GLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQME-----------EVLGSAQV 100

Query: 263 KSQIFTNSSACKLKLGD-LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
           ++Q             D    A +    A++   + V+A  + G+ Y    DV +A   F
Sbjct: 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160

Query: 322 EKALKLEPND------GGIKKELAVAKKKIHERREQE-KKQYRK 358
             AL    N         + ++L       H R   +  +Q + 
Sbjct: 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 21/172 (12%), Positives = 44/172 (25%), Gaps = 27/172 (15%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALR-----------YLDICWEKEGIDEGKSSSLRK 261
                   +   +++ +  L++  + L                              L K
Sbjct: 69  SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSK 128

Query: 262 ------TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL---- 311
                    + +        K GD+  A      A+     N  +L         L    
Sbjct: 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-CKNKVSLQNLSMVLRQLQTDS 187

Query: 312 -----NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
                  V  +V   + A++++  DG     L  A   ++    Q  K  ++
Sbjct: 188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 55/404 (13%), Positives = 110/404 (27%), Gaps = 129/404 (31%)

Query: 25  YNDVIPKTAENF-------------RALCTGE--KGIGPNTGVPLHYKGVRF-------- 61
           Y D++    + F             +++ + E    I           G           
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVSGTLRLFWTLLSK 74

Query: 62  -HRVIKGFMIQGGDISAGDGTGGESIYGL---KFEDENFELKHERKGMLSMANAGPNTNG 117
              +++ F+    ++   +       Y       + E  +     +  +   +     N 
Sbjct: 75  QEEMVQKFV---EEVLRIN-------YKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYND 122

Query: 118 SQFFI--TTTR-------TSHL----DGKHVVFGRVIKGMG----------VVRS--IEH 152
           +Q F     +R          L      K+V+    I G+           V  S  ++ 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 153 VMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAV 212
            M    D  I  + + +C   PE   + +       D  P+W +  D + N         
Sbjct: 179 KM----DFKIFWLNLKNCNS-PETVLEMLQKLLYQID--PNWTSRSDHSSN--------- 222

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID--EGKSSSLRKTKSQIFTNS 270
             IK+  +    +    +  + Y   L  L      +  +        L  T+ +  T+ 
Sbjct: 223 --IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 271 ----SACKLKLGDLKGALLDTE----FA----MRDGD-------------DNVKALFRQG 305
               +   + L      L   E           R  D               +    R G
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 306 QA------YMALNDVDAAVESFEKALKLEPNDGGIKK---ELAV 340
            A      ++  + +   +ES      LEP +   +K    L+V
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNV--LEPAE--YRKMFDRLSV 380

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 18/134 (13%)

Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR----YLDICWEKEGIDEGKSS 257
           P +++               H  + +   AL   R  L     Y  +             
Sbjct: 86  PKDIAVHAA-------LAVSHTNEHNANAALASLRAWLLSQPQYEQLG-------SVNLQ 131

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
           +          +         + +        A+    ++ +     G  Y   N+ D+A
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191

Query: 318 VESFEKALKLEPND 331
             +  +A++L P+D
Sbjct: 192 AANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LKL +L  A L  E   +   +  +A    G           A+ +   A  L+P D  +
Sbjct: 32  LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 91

Query: 335 KKELAVAKKKIHERREQEKKQYRK 358
              LAV+               R 
Sbjct: 92  HAALAVSHTNE-HNANAALASLRA 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           G +     D  F   +     +    +G + + L ++  A  +FE   +  P  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER 54

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 22/102 (21%), Positives = 37/102 (36%)

Query: 257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA 316
           +      S I T  +   ++  D + A    E A++    N  A   + + Y  L   D 
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60

Query: 317 AVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
           A ESF +AL ++P+   I             R  +    + K
Sbjct: 61  AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDK 102

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 22/160 (13%), Positives = 36/160 (22%), Gaps = 22/160 (13%)

Query: 218 FGNEHYKKQDYKMALRKYRKALR----YLDI--------CWEKEGIDEGKSS-------S 258
               +   +    A   +R+AL       +I        C       E  +         
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP 107

Query: 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV 318
              T      N   C  K G    A    + ++        A     +  M    +  A 
Sbjct: 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167

Query: 319 ESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             F+K              L     KI +     +  Y  
Sbjct: 168 YYFKKYQSRVEVLQADDLLLGW---KIAKALGNAQAAYEY 204

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 20/159 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRY----------LDICWEKEG-IDEGKSS-----SLRKT 262
             E+ + QDY+ A      AL+               ++     D+ + S     S++  
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 263 KSQIFTN-SSACKLKLGDLKGALLDTEFAMRDGD--DNVKALFRQGQAYMALNDVDAAVE 319
            ++I  N       +L     ++   + A+ D        A   +G           A  
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134

Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             +++L  +P      KELA  K     +       ++K
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKML-AGQLGDADYYFKK 172

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           L+ GDL  A+L  E A++    +++A    G           A+ +  + L+L+P++   
Sbjct: 75  LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 134

Query: 335 KKELAVAKKKIHERREQEKKQYRK 358
              LAV+       + Q  +  R 
Sbjct: 135 LMALAVSFTNE-SLQRQACEILRD 157

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 277 LGDLKGALLDTEFAMR---DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
           LG    A+   E A+     G D  +     G  +  L +   A       +K  PN   
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 334 IKKELAVAKKKIHERRE 350
           ++   A+    +    +
Sbjct: 63  LRVFYAMVLYNLGRYEQ 79

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
               A+  Y KA+       +      G  S+ R                LG+ + A   
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT---------------LGEYRKAEAV 49

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336
               ++   ++             L   +  VE   K +    +D  I+ 
Sbjct: 50  LANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LK GDL   +L  E A+     + +A    G       +  AA+ + ++ L+L+PN+   
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135

Query: 335 KKELAVAKKKIHERREQEKKQYRK 358
              LAV+       ++   +  + 
Sbjct: 136 LMALAVSYTNT-SHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 28/141 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----YLD------ICWEKEGIDEGKSSSLRKTKS---- 264
           G    + ++ + A+   ++ L      L       + +      +    +L+        
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 265 --QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ------------GQAYMA 310
              +  N          +  + +D+       +  ++A  +             G  +  
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225

Query: 311 LNDVDAAVESFEKALKLEPND 331
             + + A+++F  AL + P D
Sbjct: 226 SGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 14/112 (12%), Positives = 37/112 (33%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +  K+ D  + +     A+                        ++ +      + +  
Sbjct: 72  GLKRLKEGDLPVTILFMEAAIL------------------QDPGDAEAWQFLGITQAENE 113

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           + + A++  +  +    +N+KAL     +Y   +    A E+ +  +K  P 
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 8/54 (14%), Positives = 18/54 (33%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             +  +     F   +   +    F +G   +   D+   +   E A+  +P D
Sbjct: 45  VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
             K     +A ++ +K              DE        T +Q+ T   +       L+
Sbjct: 140 LLKLDRLDLARKELKKMQD----------QDE------DATLTQLATAWVSLAAGGEKLQ 183

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
            A    +         +  L  Q   +MA    +AA    ++AL  +         L V 
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243

Query: 342 KKKIHERREQEKKQYRKMFQ 361
            + +  +  +   +Y    +
Sbjct: 244 SQHL-GKPPEVTNRYLSQLK 262

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 275 LKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +  GD++ AL   E  ++ +     +A +  G AY  L D   A+ +++ A++L P+ 
Sbjct: 11  INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 13/116 (11%), Positives = 31/116 (26%), Gaps = 18/116 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
             +  +  D   A+  Y++A    +        +E +     +   +     S   ++  
Sbjct: 122 AGKLMEPLDLSKAVHLYQQAAAVFE--------NEERLRQAAELIGKA----SRLLVRQQ 169

Query: 279 DLKGAL------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
               A             M +     K    Q    +   D  AA +   ++  + 
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 18/125 (14%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           +  +    +F       + Y+ A+  ++KA        E E   +    +L         
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA----EAEKQPQLMGRTLY-------- 228

Query: 269 NSSACKLKLGDLKGAL------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322
           N   CK      + A+      +             +A F   Q +  L  +D A E   
Sbjct: 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 323 KALKL 327
           K +  
Sbjct: 289 KGMAY 293

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  H K   Y  A+    +                            +  +     +K G
Sbjct: 15  GISHAKAGRYSQAVMLLEQVY------------------DADAFDVDVALHLGIAYVKTG 56

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +       E ++ D  DNVK     G  Y+ +   D AV    K  +  P +
Sbjct: 57  AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  + K            ++L                  +      ++ T      +++ 
Sbjct: 49  GIAYVKTGAVDRGTELLERSL------------------ADAPDNVKVATVLGLTYVQVQ 90

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               A+            N    FR G A   L   D A++SF+ AL L PN+
Sbjct: 91  KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  + + Q Y +A+    K                            +          LG
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVA------------------EANPINFNVRFRLGVALDNLG 124

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               A+   + A+    +  K       +Y  +   + A+  F+KA +L+   
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            LG+   A    + A+   +D  +      + Y+++  +D A+  + KAL+  P D
Sbjct: 130 LLGERDKAEASLKQALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
              +   R G    AL   DAA+  FE+ALK  P D
Sbjct: 3   TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD 38

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 17/114 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
              +   + Y  AL     AL            D   + SL         N +    + G
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELA----MDIQNDRFIAISL--------LNIANSYDRSG 236

Query: 279 DLKGALLDTEFAMR-----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
           D + A+   + A +       D   K LF              A +  E+ L  
Sbjct: 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D N +  + +G       +   +++ FEKA++L+P +
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 9/59 (15%), Positives = 25/59 (42%)

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +   G+   ++   E A++   +  K    +G+A   L   + AV+ +   + +  ++
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 8e-04
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   Y   +Y  ++  + KA+                   L   +S+ +         L 
Sbjct: 13  GVLQYDAGNYTESIDLFEKAI------------------QLDPEESKYWLMKGKALYNLE 54

Query: 279 DLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             + A+    + +   +D  N      +  A   +   +   E  E   KLE + 
Sbjct: 55  RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 23/118 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +     +  A   ++          +K G    +  +L              +   G
Sbjct: 33  GYVYAFMDRFDEARASFQAL---QQQA-QKSGDHTAEHRALH--------QVGMVERMAG 80

Query: 279 DLKGAL------LDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL 327
           +   A          E      +D +      +      +   D+  A + +EK+L  
Sbjct: 81  NWDAARRCFLEER--ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK+ DY  A+  Y+KAL                   L    ++ + N      K G
Sbjct: 42  GNAYYKQGDYDEAIEYYQKAL------------------ELDPRSAEAWYNLGNAYYKQG 83

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           D   A+   + A+     + +A +  G AY    D D A+E ++KAL+L+P 
Sbjct: 84  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK+ DY  A+  Y+KAL                   L    ++ + N      K G
Sbjct: 8   GNAYYKQGDYDEAIEYYQKAL------------------ELDPRSAEAWYNLGNAYYKQG 49

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           D   A+   + A+     + +A +  G AY    D D A+E ++KAL+L+P 
Sbjct: 50  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.92
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.86
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.81
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.78
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.73
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.69
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.69
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.65
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.62
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.61
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.6
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.6
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.59
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.57
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.46
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.45
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.39
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.38
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.38
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.37
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.37
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.37
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.37
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.36
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.35
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.35
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.35
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.35
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.35
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.35
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.34
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.34
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.34
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.33
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.32
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.32
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.32
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.32
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.31
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.31
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.3
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.29
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.28
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.28
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.27
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.24
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.23
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.22
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.2
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.2
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.2
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.2
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.2
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.18
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.16
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.15
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.14
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.13
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.11
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.1
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.09
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.03
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.03
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.99
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.99
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.99
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.97
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.97
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.96
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.96
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.95
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.95
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.94
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.94
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.93
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.91
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.91
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.89
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.88
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.88
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.87
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.84
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.77
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.75
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.75
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.74
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.7
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.66
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.65
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.64
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.62
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.6
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.6
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.55
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.43
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.39
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.38
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.3
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.23
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.22
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.2
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.19
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.13
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.11
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.1
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.07
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.94
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.91
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.88
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.82
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.63
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.38
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.3
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.27
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.23
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.99
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.91
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.84
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.81
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.81
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.8
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.71
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.41
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.99
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.81
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.72
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.71
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.66
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.14
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.1
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.52
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.64
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.12
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.97
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	90.55
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.3
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	89.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.31
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	88.37
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.21
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.15
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.16
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	86.96
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	86.03
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	83.77
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	83.59
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.41
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	82.68
2wb7_A	526	PT26-6P; extra chromosomal elements, unknown funct	82.47
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.03
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	81.67
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.53
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.2

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=3.6e-75  Score=551.93  Aligned_cols=356  Identities=49%  Similarity=0.824  Sum_probs=325.9

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +|+|||||+|++++.|+|+||||++.||+||+||+.||++.+|.|...|+++||+||.||||||||||||||++.++|+|
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            79999999999999999999999999999999999999998888766688889999999999999999999999889999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ++||||.+|+||++.++|+++|+||||+.||||+||||||++.+.|+||++|+|||+|++|++++++|+..++.. +.|.
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~  173 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA  173 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998877 8899


Q ss_pred             cceEeccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhh
Q 018089          163 ADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL  242 (361)
Q Consensus       163 ~~v~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~  242 (361)
                      .+|.|..|+++.....+.+...+..++.|++++.++.....+.++..+.+..++.+|+.+++.|+|++|+.+|++|+++.
T Consensus       174 ~~v~I~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~  253 (370)
T 1ihg_A          174 KLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV  253 (370)
T ss_dssp             SCEEEEEEEEECTTCCCCCSCCSSSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEEEeccCccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            99999999999877777766556689999999999977777899999999999999999999999999999999999976


Q ss_pred             hhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~  322 (361)
                      +....  ....+......+....+|+|+|.||+++++|++|+.+|++||+++|+++++++++|.+|..+|++++|+.+|+
T Consensus       254 ~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~  331 (370)
T 1ihg_A          254 EGSRA--AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK  331 (370)
T ss_dssp             HHHHH--HSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCcc--ccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            54311  1112222336788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018089          323 KALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ  361 (361)
Q Consensus       323 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  361 (361)
                      ++++++|++..++..++.+...+++.++++++.|++||+
T Consensus       332 ~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          332 KAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999995

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.6e-54  Score=363.60  Aligned_cols=171  Identities=59%  Similarity=1.014  Sum_probs=163.6

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+++++|+|+||||++.||+||+||++||++.++.+...|+++||+|+.||||+|+|||||||++.++|+|
T Consensus         6 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   85 (177)
T 1a58_A            6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG   85 (177)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred             CcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCC
Confidence            79999999999999999999999999999999999999988776654567789999999999999999999998889999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ++|+||.+|+||++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++||+++++|++++++.++.|.
T Consensus        86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~  165 (177)
T 1a58_A           86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL  165 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             cceEecccccc
Q 018089          163 ADVTITDCGEI  173 (361)
Q Consensus       163 ~~v~I~~~~~~  173 (361)
                      .+|.|.+|+++
T Consensus       166 ~~v~I~~~G~l  176 (177)
T 1a58_A          166 ADVVILNCGEL  176 (177)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCeEEEEeEEE
Confidence            99999999976

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=2.2e-54  Score=362.98  Aligned_cols=171  Identities=61%  Similarity=1.036  Sum_probs=164.5

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +|+|||||+|+++++|+|+||||++.||+||+||++||++.++.+...++.+||+|+.||||+|+|||||||++.++|+|
T Consensus         9 ~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   88 (179)
T 2wfi_A            9 RPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRG   88 (179)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCC
Confidence            89999999999999999999999999999999999999998887766678889999999999999999999998889999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ++|+||.+|+||++.++|+++|+|||||.+|+|++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.|.
T Consensus        89 g~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~  168 (179)
T 2wfi_A           89 GESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPF  168 (179)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBS
T ss_pred             CCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             cceEecccccc
Q 018089          163 ADVTITDCGEI  173 (361)
Q Consensus       163 ~~v~I~~~~~~  173 (361)
                      .+|.|.+|+++
T Consensus       169 ~~v~I~~~G~l  179 (179)
T 2wfi_A          169 AEVRILSCGEL  179 (179)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEeCeeC
Confidence            99999999874

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=1.9e-54  Score=361.83  Aligned_cols=172  Identities=61%  Similarity=1.093  Sum_probs=163.3

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.+|+|||||+|+++++|+|+||||++.||+||+||++||++.+|++. .|+++||+|+.||||+|+|||||||++.++|
T Consensus         1 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G   79 (173)
T 2igv_A            1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG   79 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCc-cCccceECCCEEEEEECCCEEEcCCCCCCCC
Confidence            889999999999999999999999999999999999999998766653 4778899999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++|+||.+|+||++.++|.++|+|||||.+|||+||||||++.+.|+||++|+|||+|++||++|++|+.+++.. +.
T Consensus        80 ~gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~-~~  158 (173)
T 2igv_A           80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GK  158 (173)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred             CCCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998854 89


Q ss_pred             cccceEeccccccC
Q 018089          161 PIADVTITDCGEIP  174 (361)
Q Consensus       161 P~~~v~I~~~~~~~  174 (361)
                      |..+|.|.+|+++.
T Consensus       159 P~~~v~I~~~g~l~  172 (173)
T 2igv_A          159 PVKDCMIADCGQLK  172 (173)
T ss_dssp             CSSCEEEEEEEEEC
T ss_pred             CCCCEEEEEeEEEc
Confidence            99999999999873

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-54  Score=363.93  Aligned_cols=174  Identities=56%  Similarity=0.961  Sum_probs=165.5

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      +.+|+|||||+|+++++|+|+||||++.||+||+||++||++.++.+...++.+||+|+.||||+|+|||||||++.++|
T Consensus        17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G   96 (192)
T 2he9_A           17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNG   96 (192)
T ss_dssp             --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCC
Confidence            35899999999999999999999999999999999999999988877666788899999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++|+||.+|+||++.++|+++|+|||||.+|+|++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.
T Consensus        97 ~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  176 (192)
T 2he9_A           97 KGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASR  176 (192)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             cccceEeccccccC
Q 018089          161 PIADVTITDCGEIP  174 (361)
Q Consensus       161 P~~~v~I~~~~~~~  174 (361)
                      |..+|.|.+|+++.
T Consensus       177 P~~~v~I~~~g~l~  190 (192)
T 2he9_A          177 PYADVRVIDCGVLA  190 (192)
T ss_dssp             BSSCEEEEEEEECC
T ss_pred             CcCCeEEEEeEEEc
Confidence            99999999999874

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=5.2e-53  Score=355.63  Aligned_cols=169  Identities=61%  Similarity=0.986  Sum_probs=159.4

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .+|+|||||+|++++.|+|+||||++.||+||+||++||++.+|++. .|++++|+|+.||||+|+|||||||++.++|+
T Consensus        18 ~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~-~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~   96 (186)
T 2poy_A           18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGT   96 (186)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccc-cCccceECCCEEEEEeCCCEEEeCCCCCCCCC
Confidence            58999999999999999999999999999999999999998777754 47888899999999999999999999888999


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |++|+||.+|+||++.++|.++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||++|++|+++++. ++.|
T Consensus        97 gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~~~P  175 (186)
T 2poy_A           97 GGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKP  175 (186)
T ss_dssp             CCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCC
T ss_pred             CCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999984 4899


Q ss_pred             ccceEeccccc
Q 018089          162 IADVTITDCGE  172 (361)
Q Consensus       162 ~~~v~I~~~~~  172 (361)
                      ..+|.|.+|++
T Consensus       176 ~~~v~I~~cG~  186 (186)
T 2poy_A          176 TKSVCITASGV  186 (186)
T ss_dssp             SSCEEEEEEEC
T ss_pred             CCCEEEEeCCC
Confidence            99999999974

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=8.1e-53  Score=350.94  Aligned_cols=169  Identities=59%  Similarity=0.999  Sum_probs=158.1

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|||||+|+++++|+|+||||++.||+||+||++||++. +++. .|++++|+|+.||||+|+|||||||++.++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   79 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGS-RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECT-TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCc-cCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence            479999999999999999999999999999999999999854 3332 46677799999999999999999999888999


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |++|+||.+|+||++.++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||+++++|+++++ .++.|
T Consensus        80 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  158 (170)
T 1qng_A           80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCC
T ss_pred             CCccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 55899


Q ss_pred             ccceEecccccc
Q 018089          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~~  173 (361)
                      ..+|.|.+|+++
T Consensus       159 ~~~v~I~~cG~l  170 (170)
T 1qng_A          159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeceeC
Confidence            999999999874

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.6e-52  Score=347.37  Aligned_cols=163  Identities=59%  Similarity=0.983  Sum_probs=154.9

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      |++|+|||||+|+++++|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|||||||++.++
T Consensus         1 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~   71 (165)
T 2z6w_A            1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG---------FGYKGSTFHRVIPSFMCQAGDFTNHN   71 (165)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC---------ccCcCCEEEEEECCCEEEeCCccCCC
Confidence            889999999999999999999999999999999999999996543         6 999999999999999999998889


Q ss_pred             CCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCC
Q 018089           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~  159 (361)
                      |+|++|+||.+|+||++.++|.++|+||||+.+|+|++|||||++.+.|+||++|+|||+|++||+++++|+++++ .++
T Consensus        72 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~  150 (165)
T 2z6w_A           72 GTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSG  150 (165)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTS
T ss_pred             CCCCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986 458


Q ss_pred             CcccceEecccccc
Q 018089          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~~  173 (361)
                      .|..+|.|.+|+++
T Consensus       151 ~P~~~v~I~~~g~l  164 (165)
T 2z6w_A          151 RTSKKIVITDCGQL  164 (165)
T ss_dssp             CCSSCEEEEEEEEC
T ss_pred             CCCCcEEEEEeEEE
Confidence            99999999999986

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=2.7e-52  Score=347.68  Aligned_cols=163  Identities=60%  Similarity=1.000  Sum_probs=154.9

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      |.+|+|||||+|+++++|+|+||||++.||+||+||++||++.+|         | |+|+.||||+|+|||||||++.++
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   78 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG---------FGYHNCCFHRVIPQFMCQGGDFVKGD   78 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC---------ceECCCEEEEEECCCEEEcCCccCCC
Confidence            568999999999999999999999999999999999999997533         5 999999999999999999998889


Q ss_pred             CCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCC
Q 018089           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~  159 (361)
                      |+|++|+||.+|+||++.++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||+++++|+++++.. +
T Consensus        79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~-~  157 (172)
T 2cmt_A           79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-G  157 (172)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTT-C
T ss_pred             CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998864 8


Q ss_pred             CcccceEecccccc
Q 018089          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~~  173 (361)
                      .|..+|.|.+|+++
T Consensus       158 ~P~~~v~I~~~g~l  171 (172)
T 2cmt_A          158 KVKEPVIISRCGEL  171 (172)
T ss_dssp             CCSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEeEeE
Confidence            99999999999976

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.8e-52  Score=347.94  Aligned_cols=163  Identities=56%  Similarity=0.907  Sum_probs=155.3

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      |.+|+|||||+|+++++|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|||||||++.++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (172)
T 2haq_A            9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG---------FGYKDSIFHRVIQNFMIQGGDFTNFD   79 (172)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEECCCEEecCCccCCC
Confidence            568999999999999999999999999999999999999976543         6 999999999999999999988889


Q ss_pred             CCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCC
Q 018089           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~  159 (361)
                      |+|++|+||.+|+||++.++|. +|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||+++++|++++++.++
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~  158 (172)
T 2haq_A           80 GTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD  158 (172)
T ss_dssp             SSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             CCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999998878


Q ss_pred             CcccceEecccccc
Q 018089          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~~  173 (361)
                      .|..+|.|.+|+.+
T Consensus       159 ~P~~~v~I~~~g~l  172 (172)
T 2haq_A          159 RPVKPVKIVASGEL  172 (172)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             cCCCCeEEEEeEEC
Confidence            99999999999864

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=3.2e-52  Score=349.22  Aligned_cols=168  Identities=58%  Similarity=0.994  Sum_probs=159.2

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +|+|||||+|++++.|+|+||||++.||+||+||++||+++.+.   .|++++|+|+.||||+|+|||||||++.++|+|
T Consensus        10 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~---~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g   86 (177)
T 1mzw_A           10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred             CCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC---cCccceECCCEEEEEECCCEEEcCCcccCCCCC
Confidence            78999999999999999999999999999999999999987433   255667999999999999999999998889999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ++|+||.+|+||++.++|+++|+||||+.+|+|++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|.
T Consensus        87 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~  166 (177)
T 1mzw_A           87 VASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPK  166 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             CCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             cceEecccccc
Q 018089          163 ADVTITDCGEI  173 (361)
Q Consensus       163 ~~v~I~~~~~~  173 (361)
                      .+|.|.+|+++
T Consensus       167 ~~v~I~~cG~l  177 (177)
T 1mzw_A          167 LPVVISQCGEM  177 (177)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeceeC
Confidence            99999999874

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=7.8e-52  Score=345.63  Aligned_cols=163  Identities=57%  Similarity=0.962  Sum_probs=154.9

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      |.+|+|||||+|+++++|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|||||||++.++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG---------FGFKGSSFHRIIPQFMCQGGDFTNHN   79 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCC---------ceecCCEEEEeeCCCEEEeCCcCCCC
Confidence            568999999999999999999999999999999999999986543         5 999999999999999999999889


Q ss_pred             CCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCC
Q 018089           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~  159 (361)
                      |+|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.+++.. +
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~-~  158 (173)
T 2r99_A           80 GTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-G  158 (173)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-C
T ss_pred             CCCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998865 7


Q ss_pred             CcccceEecccccc
Q 018089          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~~  173 (361)
                      .|..+|.|.+|+++
T Consensus       159 ~P~~~v~I~~cG~l  172 (173)
T 2r99_A          159 KPKQKVIIADCGEY  172 (173)
T ss_dssp             CCSSCEEEEEEEEC
T ss_pred             CCCCCeEEEEeeeE
Confidence            99999999999986

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=8.1e-52  Score=343.56  Aligned_cols=162  Identities=57%  Similarity=0.952  Sum_probs=155.2

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      +||+|||||+|+++++|+|+||||++.||+||+||++||+++++         | |+|+.||||+|+|||||||++.++|
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~g   71 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG---------FGYKDSIFHRVIPQFMLQGGDFTRHNG   71 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC---------CcccCCEEEEEECCCeEEeCCCCCCCC
Confidence            48999999999999999999999999999999999999996643         6 9999999999999999999888899


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++++||.+|++|++.++|+++|+|||||.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++ ++.
T Consensus        72 ~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~  150 (164)
T 3pmp_A           72 TGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGK  150 (164)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCC
T ss_pred             CCCcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987 488


Q ss_pred             cccceEecccccc
Q 018089          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~~  173 (361)
                      |..+|+|.+|+++
T Consensus       151 P~~~v~I~~cg~l  163 (164)
T 3pmp_A          151 TNATIKITDCGTV  163 (164)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             cccCEEEEeCeEE
Confidence            9999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.7e-51  Score=355.33  Aligned_cols=168  Identities=49%  Similarity=0.932  Sum_probs=160.0

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +|+|||||+|+++++|+|+||||.+.||+||+||++||+++++.+   |+++||+|+.||||+|+|||||||++.++|+|
T Consensus        59 ~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~---g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~G  135 (229)
T 1z81_A           59 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG  135 (229)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc---CCCceECCCEEEEEeCCCEEEcCCCcCCCCCC
Confidence            789999999999999999999999999999999999999876543   66779999999999999999999998889999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEe--cChHHHHHHhccCCCCC-C
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDN-D  159 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~--~g~~vl~~i~~~~~~~~-~  159 (361)
                      +++|||.+|+||++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|+  +||++|++|++++++.. +
T Consensus       136 g~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~  215 (229)
T 1z81_A          136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY  215 (229)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred             CCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999  99999999999999886 8


Q ss_pred             CcccceEecccccc
Q 018089          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~~  173 (361)
                      .|..+|.|.+|+++
T Consensus       216 ~P~~~V~I~~cG~l  229 (229)
T 1z81_A          216 KPKIPINVVECGEL  229 (229)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             CCCCCeEEEeCeeC
Confidence            99999999999874

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=5.1e-51  Score=343.72  Aligned_cols=164  Identities=59%  Similarity=0.983  Sum_probs=155.3

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.+|+|||||+|+++++|+|+||||++.||+||+||++||++++|+        .|+|+.||||+|+|||||||++.++|
T Consensus        20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g   91 (184)
T 3rdd_A           20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGF--------GYKGSCFHRIIPGFMCQGGDFTRHNG   91 (184)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------SSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCc--------ccCCCEEEEccCCcEEEeCCCCCCCC
Confidence            5699999999999999999999999999999999999999976432        19999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++++||.+|++|++.++|+++|+||||+.+|+++||||||++.+.|+||++|+|||+|++||++|++|+++++. ++.
T Consensus        92 ~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~  170 (184)
T 3rdd_A           92 TGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGK  170 (184)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSC
T ss_pred             CCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999875 489


Q ss_pred             cccceEecccccc
Q 018089          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~~  173 (361)
                      |..+|+|.+|+++
T Consensus       171 P~~~v~I~~cG~l  183 (184)
T 3rdd_A          171 TSKKITIADCGQL  183 (184)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             CcCCeEEEeCeEE
Confidence            9999999999987

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.8e-51  Score=345.31  Aligned_cols=163  Identities=59%  Similarity=0.998  Sum_probs=156.0

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      +++|||||+|+++++|+|+||||.+.||+||+||++||++.+|         | |+|+.||||+|+|||||||++.++|+
T Consensus        15 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   85 (188)
T 3ich_A           15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG---------FGYKNSKFHRVIKDFMIQGGDFTRGDGT   85 (188)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC---------ccccCCEEEEEECCCEEEcCCccCCCCC
Confidence            5799999999999999999999999999999999999986543         6 99999999999999999998888999


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |++|+||.+|+||++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++||++|++|++++++.++.|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P  165 (188)
T 3ich_A           86 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKP  165 (188)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             ccceEeccccccC
Q 018089          162 IADVTITDCGEIP  174 (361)
Q Consensus       162 ~~~v~I~~~~~~~  174 (361)
                      ..+|.|.+|+++.
T Consensus       166 ~~~v~I~~~~~l~  178 (188)
T 3ich_A          166 LKDVIIADCGKIE  178 (188)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCCEEEEEeEEEe
Confidence            9999999999883

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=5.6e-51  Score=344.83  Aligned_cols=164  Identities=59%  Similarity=0.998  Sum_probs=157.3

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +++|||||+|+++++|+|+||||++.||+||+||++||++++|.        +|+|+.||||+|+|||||||++.++|+|
T Consensus        12 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   83 (185)
T 4fru_A           12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF--------GYKDSKFHRVIKDFMIQGGDFTRGDGTG   83 (185)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC--------eEcCCEEEEeeCCCeEEECCCCCCCCCC
Confidence            68999999999999999999999999999999999999875432        6999999999999999999999889999


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ++++||.+|++|++.++|+++|+|||||.+|+++||||||++.+.|+||++|+|||+|++||+++++|++++++.++.|.
T Consensus        84 g~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~  163 (185)
T 4fru_A           84 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL  163 (185)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEeccccccC
Q 018089          163 ADVTITDCGEIP  174 (361)
Q Consensus       163 ~~v~I~~~~~~~  174 (361)
                      .+|.|.+|+++.
T Consensus       164 ~~v~I~~~g~l~  175 (185)
T 4fru_A          164 KDVTIADCGKIE  175 (185)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCEEEEEceEEe
Confidence            999999999884

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.4e-50  Score=343.15  Aligned_cols=165  Identities=52%  Similarity=0.872  Sum_probs=156.1

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.||+|||||+|+++++|+|+||||++.||+||+||++||++++++        +|+|+.||||+|+|||||||++.++|
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g   96 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE--------GYKGSTFHRIIPGFMVQGGDYTAHNG   96 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTS--------SSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCC--------cccCCEEEEEeCCCEEEeCCCCCCCC
Confidence            5699999999999999999999999999999999999999976432        29999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++++||.+|++|++.++|+++|+||||+.+|+++||||||++.+.|+||++|+|||+|++||++|++|++++++. +.
T Consensus        97 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~-g~  175 (193)
T 3k2c_A           97 TGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSES-GQ  175 (193)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred             cCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCC-Cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999975 78


Q ss_pred             cc--cceEeccccccC
Q 018089          161 PI--ADVTITDCGEIP  174 (361)
Q Consensus       161 P~--~~v~I~~~~~~~  174 (361)
                      |.  .+|+|.+|+++.
T Consensus       176 P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          176 VKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             CCTTCCEEEEEEEECC
T ss_pred             CccCccEEEEEceEeC
Confidence            88  999999999985

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=3.4e-50  Score=335.36  Aligned_cols=160  Identities=54%  Similarity=0.929  Sum_probs=121.8

Q ss_pred             EEEEEEEeC--Ceee---eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCC
Q 018089            5 RCFLDISIG--VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAG   78 (361)
Q Consensus         5 ~~~~~~~~~--~~~~---g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~   78 (361)
                      +|||||+|+  |++.   |+|+||||++.||+||+||++||++.+|         + |+|+.||||+|+|||||||++.+
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~   74 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG---------EGYRESTFHRIIPNFMIQGGDFTRG   74 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT---------TSSTTCBCCEEETTTEEEECC----
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEeCCCEEEeCCcCCC
Confidence            899999999  7666   9999999999999999999999997643         5 99999999999999999998778


Q ss_pred             CCCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEec--ChHHHHHHhccCCC
Q 018089           79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMTG  156 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~--g~~vl~~i~~~~~~  156 (361)
                      +|+|++|+||.+|+||++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++  ||+++++|++++++
T Consensus        75 ~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~  154 (172)
T 2c3b_A           75 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  154 (172)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999  99999999999998


Q ss_pred             CCC-CcccceEecccccc
Q 018089          157 DND-CPIADVTITDCGEI  173 (361)
Q Consensus       157 ~~~-~P~~~v~I~~~~~~  173 (361)
                      ..+ .|..+|.|.+|+.+
T Consensus       155 ~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          155 SGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCccCCCCeEEEeCeeC
Confidence            755 99999999999874

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=3.3e-49  Score=343.91  Aligned_cols=174  Identities=29%  Similarity=0.537  Sum_probs=152.0

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCC---------CCCCcccccCceeEEeecCceEEe
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP---------NTGVPLHYKGVRFHRVIKGFMIQG   72 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~---------~~~~~~~y~g~~~~rv~~~~~iq~   72 (361)
                      .+|.|||||+|+++++|+|+||||.+.||+||+||++||++.+....         ..|++..|+|+.||||+|+|||||
T Consensus        13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQg   92 (234)
T 2ose_A           13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVS   92 (234)
T ss_dssp             SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEE
T ss_pred             CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEc
Confidence            48999999999999999999999999999999999999997622100         013333399999999999999999


Q ss_pred             CcCCCCCCCCCCccCCCC-----CCCCCcCCCCCCceEEEeee----CCCCCCCcceEeecCC------CCCCCCCceEE
Q 018089           73 GDISAGDGTGGESIYGLK-----FEDENFELKHERKGMLSMAN----AGPNTNGSQFFITTTR------TSHLDGKHVVF  137 (361)
Q Consensus        73 G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~g~~~~~~----~~~~~~~sqF~i~~~~------~~~ld~~~~vf  137 (361)
                      ||+..++|+|++|+||.+     |+  ++.++|+++|+|||||    .+|+|+||||||++.+      .|+||++|+||
T Consensus        93 Gd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVF  170 (234)
T 2ose_A           93 GDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVI  170 (234)
T ss_dssp             CCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEE
T ss_pred             CCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEE
Confidence            998888999999999998     77  5689999999999999    8999999999999999      89999999999


Q ss_pred             eEEecChHHHHHHhccCCCCCCCcccceEeccccccCCCC
Q 018089          138 GRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGA  177 (361)
Q Consensus       138 G~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~~~~~~  177 (361)
                      |+|++||++|++|++++++.++.|..+|.|.+|+++..++
T Consensus       171 G~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~  210 (234)
T 2ose_A          171 GQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSS  210 (234)
T ss_dssp             EEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHH
T ss_pred             EEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCc
Confidence            9999999999999999998889999999999999997653

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=1.1e-47  Score=323.34  Aligned_cols=160  Identities=43%  Similarity=0.717  Sum_probs=147.1

Q ss_pred             EEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCcc
Q 018089            7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESI   86 (361)
Q Consensus         7 ~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~   86 (361)
                      +++|.+. +++|+|+||||++.||+||+||++||+++           ||+|+.||||+|+|||||||++ ++|+|++++
T Consensus        16 ~~~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si   82 (185)
T 2poe_A           16 FQGVRII-TNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESI   82 (185)
T ss_dssp             CCEEEEE-ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTEEEEEECTTSEEEEEETT-SSSSCCCBT
T ss_pred             ceEEEEE-ecCccEEEEEeCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCCEEEcCCCC-CCCCCCCcc
Confidence            3445555 67999999999999999999999999976           8999999999999999999987 789999999


Q ss_pred             CCCCCCCCC-cCCCCCCceEEEeeeCC----CCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           87 YGLKFEDEN-FELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        87 ~~~~~~~e~-~~~~~~~~g~~~~~~~~----~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ||.+|++|+ +.++|+++|+|||||.+    |+|+||||||++.+.|+||++|+|||+|++||++|++|++++++..+.|
T Consensus        83 ~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P  162 (185)
T 2poe_A           83 YGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKP  162 (185)
T ss_dssp             TBSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCB
T ss_pred             CCCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCc
Confidence            999999998 78999999999999999    9999999999999999999999999999999999999999999888999


Q ss_pred             ccceEeccccccCCCCCC
Q 018089          162 IADVTITDCGEIPEGADD  179 (361)
Q Consensus       162 ~~~v~I~~~~~~~~~~~~  179 (361)
                      ..+|.|.+|.++..++.+
T Consensus       163 ~~~v~I~~~~i~~dPf~d  180 (185)
T 2poe_A          163 IDEIIIKDIVIHSNPIAD  180 (185)
T ss_dssp             SSCCEEEEEEEECCC---
T ss_pred             CCCeEEEEEEEECCCCCC
Confidence            999999999999766443

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=2.7e-47  Score=316.05  Aligned_cols=154  Identities=50%  Similarity=0.844  Sum_probs=145.3

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ++.|.|+++     +|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|
T Consensus        11 ~~~v~l~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~g   73 (166)
T 2x7k_A           11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEeC-----CCcEEEEEccCCCCHHHHHHHHHHhcC-----------CCCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            567888765     899999999999999999999999976           8999999999999999999987 67999


Q ss_pred             CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++|+||.+|++|+ +.++|.++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++||+++++|+.++++..+.|
T Consensus        74 g~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P  153 (166)
T 2x7k_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCB
T ss_pred             CCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence            9999999999998 489999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             ccceEecccccc
Q 018089          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~~  173 (361)
                      ..+|.|.++.++
T Consensus       154 ~~~i~I~~~~i~  165 (166)
T 2x7k_A          154 VDDVKIIKAYPS  165 (166)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999998765

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=2.5e-47  Score=315.35  Aligned_cols=152  Identities=48%  Similarity=0.767  Sum_probs=143.6

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||++.||+||+||++||+++           ||+|+.||||+|+|||||||++ ++|+|++|+||.+|++|
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE   74 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDE   74 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhhc-----------ccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccc
Confidence            66999999999999999999999999986           8999999999999999999987 67999999999999999


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC-CCcccceEeccccc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE  172 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~  172 (361)
                      +. .++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||++|++|++++++.. +.|..+|.|.++.+
T Consensus        75 ~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i  154 (161)
T 2ok3_A           75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEE
T ss_pred             cCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEE
Confidence            85 78999999999999999999999999999999999999999999999999999999999886 89999999999999


Q ss_pred             cCCCCC
Q 018089          173 IPEGAD  178 (361)
Q Consensus       173 ~~~~~~  178 (361)
                      +..+++
T Consensus       155 ~~~Pf~  160 (161)
T 2ok3_A          155 HANPFA  160 (161)
T ss_dssp             ECCSCC
T ss_pred             ecCCCC
Confidence            866543

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=5.5e-47  Score=312.30  Aligned_cols=153  Identities=47%  Similarity=0.700  Sum_probs=142.4

Q ss_pred             CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC
Q 018089            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      +.|.+++     +.|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|+
T Consensus         6 ~~v~~~T-----~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg   68 (160)
T 2fu0_A            6 KSAIIYT-----TMGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTGG   68 (160)
T ss_dssp             CEEEEEE-----TTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred             CEEEEEe-----cCccEEEEEeCCCChHHHHHHHHHhccC-----------ccCCCEEEEEECCCEEEeCCcC-CCCCCC
Confidence            4555544     4899999999999999999999999976           8999999999999999999986 679999


Q ss_pred             CccCCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           84 ESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        84 ~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +++||.+|+||+. .++|.++|+||||+.+|+|++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|.
T Consensus        69 ~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~  148 (160)
T 2fu0_A           69 ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPL  148 (160)
T ss_dssp             CCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcC
Confidence            9999999999988 699999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             cceEecccccc
Q 018089          163 ADVTITDCGEI  173 (361)
Q Consensus       163 ~~v~I~~~~~~  173 (361)
                      .+|.|.++.+.
T Consensus       149 ~~v~I~~~~v~  159 (160)
T 2fu0_A          149 EDIKILNIKIN  159 (160)
T ss_dssp             SCCBEEEEEEC
T ss_pred             CCeEEEEEEEe
Confidence            99999988654

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=6.2e-47  Score=320.50  Aligned_cols=156  Identities=47%  Similarity=0.701  Sum_probs=144.7

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ++.|.|+++     +|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|
T Consensus        38 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRVi~~f~iQgGd~~-~~g~g  100 (196)
T 2b71_A           38 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG  100 (196)
T ss_dssp             SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred             CcEEEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            467777765     899999999999999999999999976           8999999999999999999987 78999


Q ss_pred             CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++|+||.+|++|. ..++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||++|++|++++++..++|
T Consensus       101 g~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P  180 (196)
T 2b71_A          101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP  180 (196)
T ss_dssp             CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred             CCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCC
Confidence            9999999999995 578999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEeccccccCC
Q 018089          162 IADVTITDCGEIPE  175 (361)
Q Consensus       162 ~~~v~I~~~~~~~~  175 (361)
                      ..+|.|.+|.++..
T Consensus       181 ~~~i~I~~~~i~~d  194 (196)
T 2b71_A          181 IFDLKILRTSTAVN  194 (196)
T ss_dssp             SSCCEEEEEEC---
T ss_pred             CCCeEEEEEEEecC
Confidence            99999999998754

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.4e-46  Score=318.21  Aligned_cols=150  Identities=45%  Similarity=0.758  Sum_probs=142.2

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|++++||.+|+||
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE   93 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDE   93 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCccccc
Confidence            55999999999999999999999999976           8999999999999999999987 68999999999999999


Q ss_pred             -CcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC-CCcccceEeccccc
Q 018089           95 -NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE  172 (361)
Q Consensus        95 -~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~  172 (361)
                       ++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++||++|++|++++++.. +.|..+|.|.+|++
T Consensus        94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v  173 (197)
T 1zkc_A           94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV  173 (197)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred             cCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEE
Confidence             4789999999999999999999999999999999999999999999999999999999999886 89999999999999


Q ss_pred             cCCC
Q 018089          173 IPEG  176 (361)
Q Consensus       173 ~~~~  176 (361)
                      +..+
T Consensus       174 ~~dP  177 (197)
T 1zkc_A          174 FVDP  177 (197)
T ss_dssp             EECT
T ss_pred             EcCC
Confidence            8544

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1e-46  Score=314.82  Aligned_cols=149  Identities=52%  Similarity=0.750  Sum_probs=139.4

Q ss_pred             eCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCC
Q 018089           12 IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKF   91 (361)
Q Consensus        12 ~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~   91 (361)
                      +-.+++|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|++|+||.+|
T Consensus        25 ~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~   92 (176)
T 2a2n_A           25 IIHTSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEF   92 (176)
T ss_dssp             EEEETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCB
T ss_pred             EEEecCccEEEEEeCCCChHHHHHHHHHhhcC-----------ccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCcc
Confidence            33466999999999999999999999999976           8999999999999999999986 67999999999999


Q ss_pred             CCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCC-CCCCcccceEecc
Q 018089           92 EDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTG-DNDCPIADVTITD  169 (361)
Q Consensus        92 ~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~-~~~~P~~~v~I~~  169 (361)
                      +||+. .++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||+++++|++++++ .++.|..+|.|.+
T Consensus        93 ~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~  172 (176)
T 2a2n_A           93 EDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN  172 (176)
T ss_dssp             CCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEE
T ss_pred             ccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEE
Confidence            99988 699999999999999999999999999999999999999999999999999999999998 5689999999988


Q ss_pred             ccc
Q 018089          170 CGE  172 (361)
Q Consensus       170 ~~~  172 (361)
                      +.+
T Consensus       173 v~v  175 (176)
T 2a2n_A          173 ITV  175 (176)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            753

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=3.6e-46  Score=316.76  Aligned_cols=159  Identities=49%  Similarity=0.828  Sum_probs=148.9

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ++.|.|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|++
T Consensus        11 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~F~iQgGd~~-~~g~g   73 (203)
T 2k7n_A           11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (203)
T ss_dssp             CSEEEEEES-----SCEEEEEECTTTCTTHHHHHHHHHHHT-----------CGGGCEEEEEETTTEEEEECSS-SSSSC
T ss_pred             CCEEEEEeC-----CCcEEEEEccCCCcHHHHHHHHHHhcC-----------ccCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            578888775     899999999999999999999999976           8999999999999999999987 67899


Q ss_pred             CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++++||.+|++|+ +.++|.++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.|
T Consensus        74 g~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P  153 (203)
T 2k7n_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (203)
T ss_dssp             CCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEE
T ss_pred             CCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence            9999999999998 589999999999999999999999999999999999999999999999999999999999887899


Q ss_pred             ccceEeccccccCCCCC
Q 018089          162 IADVTITDCGEIPEGAD  178 (361)
Q Consensus       162 ~~~v~I~~~~~~~~~~~  178 (361)
                      ..+|.|.+|.++.....
T Consensus       154 ~~~V~I~~~~v~~~~~s  170 (203)
T 2k7n_A          154 VDDVKIIKAYPSGGGGS  170 (203)
T ss_dssp             CCCCBEEEEEECCCCCC
T ss_pred             CCCeEEEEEEEEecCCC
Confidence            99999999999876543

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-45  Score=312.02  Aligned_cols=161  Identities=44%  Similarity=0.712  Sum_probs=142.2

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCC-CCC---CcccccCceeEEeecCceEEeCcCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP-NTG---VPLHYKGVRFHRVIKGFMIQGGDISAG   78 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~-~~~---~~~~y~g~~~~rv~~~~~iq~G~~~~~   78 (361)
                      ++.|.|+     +++|+|+||||++.||+||+||++||++.++... .+|   +.+||+|+.||||+|+|||||||+. +
T Consensus        23 ~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~-g   96 (191)
T 1w74_A           23 TATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-G   96 (191)
T ss_dssp             SEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-S
T ss_pred             CeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC-C
Confidence            4455554     4589999999999999999999999988776421 112   2359999999999999999999975 6


Q ss_pred             CCCCCCccCCCCCCCC-CcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEec--ChHHHHHHhccCC
Q 018089           79 DGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMT  155 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~--g~~vl~~i~~~~~  155 (361)
                      +|+|+   ||.+|+|| ++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++  ||++|++|+++++
T Consensus        97 ~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t  173 (191)
T 1w74_A           97 TGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT  173 (191)
T ss_dssp             SSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCB
T ss_pred             CCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCc
Confidence            67777   58899999 468999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             CCCCCcccceEeccccc
Q 018089          156 GDNDCPIADVTITDCGE  172 (361)
Q Consensus       156 ~~~~~P~~~v~I~~~~~  172 (361)
                      +..+.|..+|.|.+|++
T Consensus       174 ~~~~~P~~~v~I~~~~i  190 (191)
T 1w74_A          174 DGNDRPTDPVVIESITI  190 (191)
T ss_dssp             CTTSCBSSCCEEEEEEE
T ss_pred             CCCCCcCCCeEEEEEEE
Confidence            88899999999999875

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=6.1e-46  Score=317.48  Aligned_cols=154  Identities=36%  Similarity=0.585  Sum_probs=137.4

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeC-----cCCCCCCCCCCccC--
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGG-----DISAGDGTGGESIY--   87 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G-----~~~~~~~~~~~~~~--   87 (361)
                      |+.|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+||||||     |++ ++|+|++|+|  
T Consensus        13 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g~gg~si~~~   80 (201)
T 3bo7_A           13 TTQGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAELRQPS-KKKEVQQSPRSI   80 (201)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEECCGGGCCC--------CCSSCC
T ss_pred             eCCCCEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCCEEEEeeCCCEEEcCcccccCCC-CCCCCCcccccc
Confidence            45899999999999999999999999976           9999999999999999999     987 7799999999  


Q ss_pred             -----CCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           88 -----GLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        88 -----~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                           |.+|++|. +.++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||++|++|+.++++..+.|
T Consensus        81 ~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P  160 (201)
T 3bo7_A           81 SGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKP  160 (201)
T ss_dssp             CSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCB
T ss_pred             ccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCc
Confidence                 89999994 788999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEeccccccCCCCCCC
Q 018089          162 IADVTITDCGEIPEGADDG  180 (361)
Q Consensus       162 ~~~v~I~~~~~~~~~~~~~  180 (361)
                      ..+|.|.+|+++..++++.
T Consensus       161 ~~~i~I~~~~v~~dPf~d~  179 (201)
T 3bo7_A          161 LKPPKVEEIIVFKNPFEDA  179 (201)
T ss_dssp             SSCCBEEEEEEEECCC---
T ss_pred             CCCeEEEEEEEEcCCccCH
Confidence            9999999999997765544

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=2.1e-45  Score=309.00  Aligned_cols=158  Identities=40%  Similarity=0.727  Sum_probs=145.7

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ++.|+|+++     +|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|
T Consensus        24 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~g   86 (185)
T 2hq6_A           24 NGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCLEA-----------YYDNTIFHRVVPGFIVQGGDPT-GTGSG   86 (185)
T ss_dssp             BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEeC-----CccEEEEEeCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            567888875     899999999999999999999999976           8999999999999999999986 67999


Q ss_pred             CCccCCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHH--HHHhccCCCCCC
Q 018089           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVV--RSIEHVMTGDND  159 (361)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl--~~i~~~~~~~~~  159 (361)
                      ++++||.+|++|+. .++|+++|+|||||.+|+++||||||++.+.|+||++|+|||+|+ |++++  ++|+.++++.++
T Consensus        87 g~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~  165 (185)
T 2hq6_A           87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDE  165 (185)
T ss_dssp             CCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTS
T ss_pred             CCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCC
Confidence            99999999999986 688999999999999999999999999999999999999999999 88774  678888888889


Q ss_pred             CcccceEeccccccCCCCC
Q 018089          160 CPIADVTITDCGEIPEGAD  178 (361)
Q Consensus       160 ~P~~~v~I~~~~~~~~~~~  178 (361)
                      .|..+|.|.+|+++..+++
T Consensus       166 ~P~~~v~I~~~~v~~~Pf~  184 (185)
T 2hq6_A          166 RPHNPHKIKSCEVLFNPFD  184 (185)
T ss_dssp             CBSSCCEEEEEEEEECTTC
T ss_pred             CCCCCeEEEEEEEeCCCCC
Confidence            9999999999999876543

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=2.6e-44  Score=299.01  Aligned_cols=153  Identities=31%  Similarity=0.502  Sum_probs=136.9

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .+|.|+|+++     +|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++...  
T Consensus         3 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~--   64 (166)
T 1v9t_A            3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQM--   64 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTC--
T ss_pred             CCeEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCcEEEcCCcCcCC--
Confidence            4788999864     899999999999999999999999876           8999999999999999999987432  


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeC-CCCCCCcceEeecCCCCCCCCC-----ceEEeEEecChHHHHHHhccCC
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK-----HVVFGRVIKGMGVVRSIEHVMT  155 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~~~ld~~-----~~vfG~v~~g~~vl~~i~~~~~  155 (361)
                       +.+.+|.+|++|+....|+.+|+|||||. +|||+||||||++.+.|+||++     |+|||+|++||++|++|+++++
T Consensus        65 -~~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~  143 (166)
T 1v9t_A           65 -QQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             -CBCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             -CCCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCC
Confidence             23446888999987766788999999997 5999999999999999999998     9999999999999999999988


Q ss_pred             CC----CCCcccceEecccccc
Q 018089          156 GD----NDCPIADVTITDCGEI  173 (361)
Q Consensus       156 ~~----~~~P~~~v~I~~~~~~  173 (361)
                      +.    ++.|..+|.|.++.++
T Consensus       144 ~~~~~~~~~P~~~v~I~~~~v~  165 (166)
T 1v9t_A          144 HDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             EEETTEEEEESSCCBEEEEEEC
T ss_pred             CCCCccCCCcCCCeEEEEEEEe
Confidence            75    3679999999998765

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=5.5e-44  Score=310.30  Aligned_cols=161  Identities=34%  Similarity=0.580  Sum_probs=146.2

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      .+.|+|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|
T Consensus        21 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydgt~FhRVi~~FmiQgGdp~-~~G~G   83 (232)
T 3bkp_A           21 RGKVVLHTS-----LGDLDVELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGDPT-GTGRG   83 (232)
T ss_dssp             BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHHT-----------TTTTCBEEEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEEC-----CCcEEEEEcCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEeCCCEEEcCCCC-CCCCC
Confidence            457888765     899999999999999999999999986           9999999999999999999987 78999


Q ss_pred             CCccC--CCCCCCCCc-CCCCCCceEEEeeeCCC--------------CCCCcceEeecCCCCCCCCCceEEeEEecChH
Q 018089           83 GESIY--GLKFEDENF-ELKHERKGMLSMANAGP--------------NTNGSQFFITTTRTSHLDGKHVVFGRVIKGMG  145 (361)
Q Consensus        83 ~~~~~--~~~~~~e~~-~~~~~~~g~~~~~~~~~--------------~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~  145 (361)
                      ++++|  |.+|+||+. .++|+.+|+||||+.++              +|+||||||++.+.|+||++|+|||+|+ |++
T Consensus        84 g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~  162 (232)
T 3bkp_A           84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHT  162 (232)
T ss_dssp             CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred             CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCc
Confidence            99999  999999986 68899999999999996              6999999999999999999999999999 776


Q ss_pred             H--HHHHhccCCCCCCCcccceEeccccccCCCCCCCC
Q 018089          146 V--VRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI  181 (361)
Q Consensus       146 v--l~~i~~~~~~~~~~P~~~v~I~~~~~~~~~~~~~~  181 (361)
                      +  +++|+.++++.+++|..+|.|.+|+++..++.+..
T Consensus       163 v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf~d~~  200 (232)
T 3bkp_A          163 LYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDLV  200 (232)
T ss_dssp             HHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCCTTCC
T ss_pred             hHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCChhhhh
Confidence            6  88999999988899999999999999987765553

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=1.9e-43  Score=294.61  Aligned_cols=153  Identities=33%  Similarity=0.502  Sum_probs=135.2

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      ++|.|.|+++     +|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++...  
T Consensus         2 p~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~--   63 (167)
T 3s6m_A            2 PGSMVELHTN-----HGVIKLELDEAKAPKTVENFLNYVKKG-----------HYDGTIFHRVINGFMIQGGGFEPGL--   63 (167)
T ss_dssp             CCCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEESSEETTT--
T ss_pred             CCcEEEEEeC-----CceEEEEEeCCCCcHHHHHHHHHhhhc-----------ccCCCEeEEecCCcEEEeccccCCC--
Confidence            3677777654     999999999999999999999999986           8999999999999999999987433  


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeee-CCCCCCCcceEeecCCCCCCCCC--------ceEEeEEecChHHHHHHhc
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMAN-AGPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~-~~~~~~~sqF~i~~~~~~~ld~~--------~~vfG~v~~g~~vl~~i~~  152 (361)
                       +.+.++.+|++|.....++.+|+||||| .+|+|+||||||++.+.|+||++        |+|||+|++||+++++|++
T Consensus        64 -~~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~  142 (167)
T 3s6m_A           64 -KQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKA  142 (167)
T ss_dssp             -EECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTT
T ss_pred             -CCCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHc
Confidence             2345688899997655556899999999 56999999999999999999998        9999999999999999999


Q ss_pred             cCCCC----CCCcccceEecccccc
Q 018089          153 VMTGD----NDCPIADVTITDCGEI  173 (361)
Q Consensus       153 ~~~~~----~~~P~~~v~I~~~~~~  173 (361)
                      ++++.    ++.|..+|.|.++.++
T Consensus       143 ~~t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          143 VKTGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             SCBBC---CBTCBSSCCEEEEEEEC
T ss_pred             CCcCCCcccCCCcCCCeEEEEEEEC
Confidence            99987    5899999999988653

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=1.8e-43  Score=293.40  Aligned_cols=145  Identities=33%  Similarity=0.553  Sum_probs=130.9

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|||||||++.+.   +.+++|.+|+||
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE   71 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNE   71 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCC
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCceEecCCcccCC---CcCCCCCccccc
Confidence            56999999999999999999999999876           8999999999999999999987433   456789999999


Q ss_pred             CcCCCCCCceEEEeeeC-CCCCCCcceEeecCCCCCCCCC--------ceEEeEEecChHHHHHHhccCCCC----CCCc
Q 018089           95 NFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCP  161 (361)
Q Consensus        95 ~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~~~ld~~--------~~vfG~v~~g~~vl~~i~~~~~~~----~~~P  161 (361)
                      +....++.+|+|||||. +|+|+||||||++.+.|+||++        |+|||+|++||++|++|++++++.    ++.|
T Consensus        72 ~~~~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P  151 (164)
T 1lop_A           72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP  151 (164)
T ss_dssp             CCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred             cccccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCc
Confidence            87644457999999975 6999999999999999999998        999999999999999999998864    4789


Q ss_pred             ccceEecccccc
Q 018089          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~~  173 (361)
                      ..+|.|.+|.++
T Consensus       152 ~~~v~I~~~~v~  163 (164)
T 1lop_A          152 KEDVIIESVTVS  163 (164)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999999875

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-38  Score=291.90  Aligned_cols=137  Identities=25%  Similarity=0.411  Sum_probs=122.0

Q ss_pred             CCEEEEEEEeCCe---eeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCC
Q 018089            3 RPRCFLDISIGVE---LEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         3 ~~~~~~~~~~~~~---~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      ++.|.|++++.++   +.|+|+|+||++.||+||+||++||+.+           ||+|+.|||| +||||||||++ ++
T Consensus       170 ra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~G-----------fYdGt~FHRV-~gFmIQgGDp~-g~  236 (369)
T 3rfy_A          170 RASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERH-----------FYDGMEIQRS-DGFVVQTGDPE-GP  236 (369)
T ss_dssp             EEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTT-----------TTTTEECEEE-EEEEECCCCCC-CC
T ss_pred             CeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCeeeee-CCeeEecCCCC-CC
Confidence            4567777776543   6899999999999999999999999976           9999999999 99999999987 55


Q ss_pred             CCC---------------------CCccCCCCCCCCCc-----CCCCCCceEEEeeeC--CCCCCCcceEeec-------
Q 018089           80 GTG---------------------GESIYGLKFEDENF-----ELKHERKGMLSMANA--GPNTNGSQFFITT-------  124 (361)
Q Consensus        80 ~~~---------------------~~~~~~~~~~~e~~-----~~~~~~~g~~~~~~~--~~~~~~sqF~i~~-------  124 (361)
                      |+|                     +.++|+.+|++|++     .++|+++|+|||||.  +|||+||||||++       
T Consensus       237 G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~  316 (369)
T 3rfy_A          237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTP  316 (369)
T ss_dssp             CSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECS
T ss_pred             CCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCC
Confidence            655                     45788999998864     689999999999998  7999999999999       


Q ss_pred             CCCCCCCCCceEEeEEecChHHHHHHhc
Q 018089          125 TRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus       125 ~~~~~ld~~~~vfG~v~~g~~vl~~i~~  152 (361)
                      .+.|+||++|+|||+|++||++|++|++
T Consensus       317 ~~~~~LDgkytVFG~VveGmdVVdkI~~  344 (369)
T 3rfy_A          317 SNSNILDGRYAVFGYVTDNEDFLADLKV  344 (369)
T ss_dssp             CCCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred             CCCcccCCCeeEEEEEecCHHHHHHHhC
Confidence            4689999999999999999999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.92  E-value=1.5e-24  Score=180.04  Aligned_cols=157  Identities=29%  Similarity=0.447  Sum_probs=135.9

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai  284 (361)
                      .++.++.+..++..|+.+++.|+|++|+..|++++++++.......+..+.....+|....+|+|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45667789999999999999999999999999999987766555555555555668999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKIHERREQEKKQYRKMFQ  361 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  361 (361)
                      .+|++||.++|+++++|+++|.+|..+|++++|+.+|+++++++|+++ .+...+..+...+++.++++++.|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999 88999999999999999999999999995

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=2.4e-21  Score=154.42  Aligned_cols=116  Identities=25%  Similarity=0.426  Sum_probs=111.3

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ++.++.++++|+.+++.|+|++|++.|+++++                  ++|.+..+|.++|.|+.++|++++|+.+|+
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~   71 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAACLTKLMEFQRALDDCD   71 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHhhHHHhhccHHHHHHHHH
Confidence            45688999999999999999999999999999                  888899999999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      +||+++|+++++|+++|.++..+|++++|+.+|+++++++|++..++..|+.+.
T Consensus        72 ~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999888763

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.86  E-value=3e-21  Score=158.20  Aligned_cols=137  Identities=13%  Similarity=0.078  Sum_probs=122.4

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+++.|+.+++.|+|++|+.+|++||++.+.....      +.....|.+..+|+|+|.|+.++|+|++|+.+|+
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~   81 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD   81 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            5578899999999999999999999999999987752111      1122566777899999999999999999999999


Q ss_pred             HHhhc-------CCCchhHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRD-------GDDNVKAL----FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       289 ~al~~-------~p~~~ka~----~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +||++       +|++.++|    +++|.++..+|++++|+.+|+++++++|+++.+...+..+++.+++.+++
T Consensus        82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999       99999999    99999999999999999999999999999999999999999988876654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.82  E-value=1.1e-19  Score=176.38  Aligned_cols=158  Identities=24%  Similarity=0.401  Sum_probs=137.3

Q ss_pred             CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +....+..+..+..++.+|+.+++.|+|++|+.+|++|+++.+....   ...+......+....+|+|+|.||+++++|
T Consensus       257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~~~~~~nla~~~~~~g~~  333 (457)
T 1kt0_A          257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG---LSEKESKASESFLLAAFLNLAMCYLKLREY  333 (457)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS---CCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc---CChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            35567778889999999999999999999999999999997654321   122333456777789999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      ++|+.+|++||.++|++.++|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.++++++.|++||
T Consensus       334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 018089          361 Q  361 (361)
Q Consensus       361 ~  361 (361)
                      +
T Consensus       414 ~  414 (457)
T 1kt0_A          414 K  414 (457)
T ss_dssp             -
T ss_pred             h
Confidence            5

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.81  E-value=4.4e-19  Score=165.14  Aligned_cols=157  Identities=28%  Similarity=0.414  Sum_probs=141.8

Q ss_pred             CCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHH
Q 018089          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (361)
Q Consensus       202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (361)
                      ....+..+..+..++.+|+.+++.|+|++|+..|++|+++.+....   ...+......+....+|+|+|.|++++|+|+
T Consensus       137 ~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~  213 (336)
T 1p5q_A          137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS---FSNEEAQKAQALRLASHLNLAMCHLKLQAFS  213 (336)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC---CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc---CChHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            4556777888999999999999999999999999999997654321   1223344567778899999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018089          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ  361 (361)
Q Consensus       282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  361 (361)
                      +|+.+|++||+++|++.++++++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.++++++.|++||+
T Consensus       214 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          214 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999983

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.81  E-value=2.2e-19  Score=153.70  Aligned_cols=165  Identities=25%  Similarity=0.292  Sum_probs=130.0

Q ss_pred             CCCcCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH
Q 018089          195 PADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       195 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  274 (361)
                      ....+.+..+.++..+.+..+..+|+.++..|+|++|+..|.+++++.+......  ..............++.++|.|+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~   98 (198)
T 2fbn_A           21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNLNLATCY   98 (198)
T ss_dssp             -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc--hhhHHHHHHHHHHHHHHHHHHHH
Confidence            3333445667888899999999999999999999999999999999654321000  00011112233458999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018089          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      .++|+|++|+.+|++++.++|++.++++++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..++++.
T Consensus        99 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  178 (198)
T 2fbn_A           99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKL  178 (198)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcC
Q 018089          355 QYRKMFQ  361 (361)
Q Consensus       355 ~~~~~f~  361 (361)
                      .|++||+
T Consensus       179 ~~~~~f~  185 (198)
T 2fbn_A          179 TFGGMFD  185 (198)
T ss_dssp             -------
T ss_pred             HHHHHhc
Confidence            9999985

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.78  E-value=9.9e-19  Score=139.26  Aligned_cols=115  Identities=26%  Similarity=0.353  Sum_probs=103.9

Q ss_pred             HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~  287 (361)
                      ..+.|..++++|+.+++.|+|++|+++|++||+                  ++|....+|.|+|.||+++|+|++|+.+|
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~------------------~~p~~~~~~~nlg~~~~~~~~~~~A~~~~   65 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE------------------LDPSNITFYNNKAAVYFEEKKFAECVQFC   65 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence            345788999999999999999999999999999                  88888999999999999999999999999


Q ss_pred             HHHhhcCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          288 EFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       288 ~~al~~~p~~-------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      +++|+++|++       .++++++|.++..+|++++|+.+|+++++++| ++.....|.++
T Consensus        66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~l  125 (127)
T 4gcn_A           66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHHHHH
T ss_pred             HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHHHHh
Confidence            9999998876       46899999999999999999999999999988 45565555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.78  E-value=5.2e-19  Score=164.77  Aligned_cols=163  Identities=25%  Similarity=0.372  Sum_probs=104.9

Q ss_pred             cCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc
Q 018089          198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL  277 (361)
Q Consensus       198 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l  277 (361)
                      ...+....++.++.+..++.+|+.+++.|+|++|+.+|++|+++.+....... ..............+|+|+|.||+++
T Consensus       165 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~l~~~~~~nla~~~~~~  243 (338)
T 2if4_A          165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQL-YGKYQDMALAVKNPCHLNIAACLIKL  243 (338)
T ss_dssp             BTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTC-CHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhh-cccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34466778899999999999999999999999999999999995542210000 00000111222335899999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       278 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      ++|++|+.+|+++|+++|++.++|+++|.+|..+|++++|+.+|+++++++|++..++..|..+........+++++.|+
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~  323 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK  323 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888888888899999


Q ss_pred             hhcC
Q 018089          358 KMFQ  361 (361)
Q Consensus       358 ~~f~  361 (361)
                      +||+
T Consensus       324 ~~l~  327 (338)
T 2if4_A          324 GIFK  327 (338)
T ss_dssp             ----
T ss_pred             HhhC
Confidence            9984

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=3e-18  Score=135.44  Aligned_cols=117  Identities=20%  Similarity=0.314  Sum_probs=111.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|+.+++.|+|++|+..|+++++                  .+|.+..+|.++|.|+.++|++++|+.+++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            578899999999999999999999999999                  77888899999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~------p~~~~~~~~l~~~~~~~  345 (361)
                      ++++|++..+++++|.++..+|++++|+..|+++++++      |++..++..+..+...+
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999      99999999998887653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.74  E-value=1.7e-17  Score=137.53  Aligned_cols=123  Identities=28%  Similarity=0.384  Sum_probs=112.8

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|+.++..|+|++|+..|+++++                  ++|.+..+|+++|.||+.+|++++|+.++++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   70 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALS------------------IAPANPIYLSNRAAAYSASGQHEKAAEDAEL   70 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4678899999999999999999999999999                  7788899999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAVAKKKIHERRE  350 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~--~~~~l~~~~~~~~~~~~  350 (361)
                      ++.++|++..+|+++|.+|..+|++++|+.+|+++++++|++..  ....+..++.++++..+
T Consensus        71 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  133 (164)
T 3sz7_A           71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR  133 (164)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999987  56666666666665544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.73  E-value=4.1e-17  Score=133.99  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=101.6

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ++.+..+..+|..+++.|+|++|+..|+++++                  ++|.+..+|.++|.|+..+|+|++|+..|+
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------------------~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~   94 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------------------YDFYNVDYIMGLAAIYQIKEQFQQAADLYA   94 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            34578899999999999999999999999999                  889999999999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      +|++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus        95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999999765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=8.4e-17  Score=130.24  Aligned_cols=124  Identities=17%  Similarity=0.249  Sum_probs=115.1

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      +.+..+..+|..++..|+|++|+..|++++.                  .+|.+..+|.++|.|+..+|++++|+..+++
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   77 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCM------------------LDHYDARYFLGLGACRQSLGLYEQALQSYSY   77 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3567789999999999999999999999999                  8888899999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...++..+++
T Consensus        78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A           78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999998888888887777765544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=7.5e-17  Score=131.88  Aligned_cols=124  Identities=12%  Similarity=0.178  Sum_probs=112.2

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      .+.+..+..+|..++..|+|++|+..|++++.                  .+|.+..+|.++|.|+..+|++++|+..|+
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   79 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------------------LDHYDSRFFLGLGACRQAMGQYDLAIHSYS   79 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------cCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34577889999999999999999999999999                  888899999999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +++.++|+++.+++++|.+|..+|++++|+..|+++++++|+++........+...++..+.
T Consensus        80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  141 (148)
T 2vgx_A           80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL  141 (148)
T ss_dssp             HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred             HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988777766666666664443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.70  E-value=6.6e-17  Score=132.43  Aligned_cols=116  Identities=10%  Similarity=0.029  Sum_probs=102.5

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      +.+..+..+|+.+++.|+|++|+++|+++++                  ++|.+..+|.++|.||.++|++++|+..+++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~   90 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------VQERDPKAHRFLGLLYELEENTDKAVECYRR   90 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            3566678899999999999999999999998                  8888899999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVES-FEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~-~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +++++|+++.+++++|.+|..+|++++|... ++++++++|+++.++..+..+..
T Consensus        91 al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           91 SVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999876654 68999999999998887777654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.69  E-value=6.9e-17  Score=132.30  Aligned_cols=115  Identities=16%  Similarity=0.068  Sum_probs=105.8

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      +|..+..+|++++|++.|++++.                  ..|.....++++|.+|+++|+|++|+.+++++|+++|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~   64 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD   64 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            68889999999999999999998                  888899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.+....++..+
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            99999999999999999999999999999999999999999998887765543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.69  E-value=1.2e-16  Score=127.49  Aligned_cols=122  Identities=27%  Similarity=0.370  Sum_probs=113.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.|+..+|++++|+..++++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   69 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh------------------hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467889999999999999999999999999                  77778899999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-----DGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-----~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +.++|++..+++++|.++..+|++++|+..|+++++++|+     +..+...+..++......++
T Consensus        70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998     78888888888877665544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.6e-15  Score=130.95  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=111.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHH----------------HHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN----------------SSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n----------------la~~~  274 (361)
                      .+..+...|..++..|+|++|+..|+++++                  .+|.+..++++                +|.++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA------------------LNIDRTEMYYWTNVDKNSEISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence            356788899999999999999999999999                  88888888888                99999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      .++|++++|+..++++++++|++..+++++|.++..+|++++|+..|+++++++|++..++..++.+.....+
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988755443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.65  E-value=7.2e-16  Score=156.88  Aligned_cols=124  Identities=23%  Similarity=0.302  Sum_probs=93.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      +.+..+.++|+.+.+.|+|++|++.|++||+                  ++|....+|+|+|.+|.++|++++|+..|++
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~------------------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~   68 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALE------------------VFPEFAAAHSNLASVLQQQGKLQEALMHYKE   68 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4567777888888888888888888888887                  6666677777777777777777777777777


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ||+++|++..+|+++|.+|..+|++++|++.|+++++++|++..++.+|+.+...+++.+++
T Consensus        69 Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            77777777777777777777777777777777777777777777777777777766665555

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=3e-15  Score=115.11  Aligned_cols=115  Identities=27%  Similarity=0.306  Sum_probs=108.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   64 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT   64 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            567889999999999999999999999999                  66777889999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus        65 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999988887754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=1e-14  Score=119.68  Aligned_cols=119  Identities=24%  Similarity=0.360  Sum_probs=111.1

Q ss_pred             hHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 018089          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       206 ~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~  285 (361)
                      ....+.+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+.
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~   68 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALG   68 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence            45567889999999999999999999999999999                  677778899999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      .+++++.++|.+..+++++|.++..+|++++|+..|+++++++|.+..++..+..+.
T Consensus        69 ~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           69 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998887766663

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.62  E-value=6.9e-15  Score=115.13  Aligned_cols=123  Identities=33%  Similarity=0.407  Sum_probs=114.0

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      .....+..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~   68 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE------------------LNPANAVYFCNRAAAYSKLGNYAGAVQD   68 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhhchHHHHHH
Confidence            3455788899999999999999999999999998                  6666788999999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      +++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           69 CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999888776543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.61  E-value=2.1e-15  Score=131.05  Aligned_cols=122  Identities=18%  Similarity=0.242  Sum_probs=71.8

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|+|++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..+++++
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   66 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALK------------------ENPQDPEALYWLARTQLKLGLVNPALENGKTLV   66 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34455566666666666666666666665                  455555555666666666666666666666666


Q ss_pred             hcCCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMAL-----------NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~-----------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +++|++..+++.+|.++..+           |++++|+..|+++++++|++..++..++.+...+++.+++
T Consensus        67 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence            66666666666666666555           5666666666666666665555555555555554444433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=1.9e-15  Score=153.73  Aligned_cols=125  Identities=18%  Similarity=0.184  Sum_probs=117.6

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      .+.+..+.++|+.+.+.|+|++|+++|++|++                  ++|....+|+|+|.++.++|++++|++.|+
T Consensus        40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~------------------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~  101 (723)
T 4gyw_A           40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR------------------ISPTFADAYSNMGNTLKEMQDVQGALQCYT  101 (723)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34577899999999999999999999999999                  888999999999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +||+++|++..+|+++|.+|..+|++++|++.|++|++++|++..++..|+.+...+.+..++
T Consensus       102 kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            999999999999999999999999999999999999999999999999999998877655544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=1.8e-15  Score=119.18  Aligned_cols=103  Identities=10%  Similarity=0.018  Sum_probs=92.8

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..+|..+++.|++++|+..|+++++                  .+|.+..+|+++|.++..+|++++|+..+++|++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   79 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM   79 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999                  8889999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      ++|++..+++.+|.++..+|++++|+..|+++++++|.+..
T Consensus        80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999999999999999999999998753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.60  E-value=4.3e-15  Score=117.08  Aligned_cols=117  Identities=25%  Similarity=0.354  Sum_probs=109.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..++++++|+..++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   76 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAACYTKLLEFQLALKDCEEC   76 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            467899999999999999999999999998                  56666789999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      +.++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....
T Consensus        77 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998888876543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.60  E-value=7.1e-15  Score=115.20  Aligned_cols=120  Identities=29%  Similarity=0.380  Sum_probs=110.2

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..++++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            567889999999999999999999999999                  66667889999999999999999999999999


Q ss_pred             hhcCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       291 l~~~p~~-------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +.++|.+       ..+++++|.++..+|++++|+..|++++++.| ++.+...+..+...+++.+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  129 (131)
T 1elr_A           65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE  129 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence            9998877       89999999999999999999999999999999 6888999988888776543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=8.9e-15  Score=117.62  Aligned_cols=118  Identities=31%  Similarity=0.447  Sum_probs=106.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...|..++..|+|++|+..|++++++.+               .++....++.++|.++..++++++|+..++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   91 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---------------TPQDQAVLHRNRAACHLKLEDYDKAETEASKA   91 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---------------cchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            467789999999999999999999999998321               12234789999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +.++|++..+++++|.++..+|++++|+..|+++++++|++..++..+..+..
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888877653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.59  E-value=1.6e-14  Score=125.77  Aligned_cols=122  Identities=16%  Similarity=0.243  Sum_probs=109.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      +..+...|..++..|+|++|+..|+++++                  ..| .+..+++++|.|+..+|++++|+.+++++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   68 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLK------------------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIA   68 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence            46789999999999999999999999999                  555 56678899999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-------GIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~-------~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.++|++..+++.+|.+|..+|++++|+..|+++++++|++.       .++..++.+...+++.+++
T Consensus        69 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  136 (228)
T 4i17_A           69 IKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA  136 (228)
T ss_dssp             HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence            999999999999999999999999999999999999999999       4566677766666655554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.58  E-value=4.1e-15  Score=121.48  Aligned_cols=107  Identities=17%  Similarity=0.220  Sum_probs=98.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHh
Q 018089          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL----------KGALLDTEFAM  291 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~----------~~Ai~~~~~al  291 (361)
                      .-+.++|++|++.|+++++                  ++|.+..+|+|+|.++..++++          ++|+..|++||
T Consensus        12 ~~r~~~feeA~~~~~~Ai~------------------l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL   73 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   73 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence            4467899999999999999                  9999999999999999999876          59999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      +++|++..+|+++|.+|..+|           ++++|+.+|++|++++|++...+..+..+.+..+
T Consensus        74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~e  139 (158)
T 1zu2_A           74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  139 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHh
Confidence            999999999999999999885           8999999999999999999998888887766554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=5.9e-15  Score=139.53  Aligned_cols=119  Identities=11%  Similarity=0.064  Sum_probs=66.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Ai~~~~~  289 (361)
                      .+..+...|..+.+.|+|++|+..|+++|+                  ++|.+..+|+++|.++..+|+ +++|+.++++
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------------------l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~  157 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITA  157 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------hCccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            345555566666666666666666666665                  455555555555555555554 5555555555


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ||.++|++..+|+++|.++..+|++++|+.+|+++++++|.+..++..++.+...+++
T Consensus       158 al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~  215 (382)
T 2h6f_A          158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL  215 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence            5555555555555555555555555555555555555555555555555555544443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.58  E-value=2.4e-14  Score=120.17  Aligned_cols=124  Identities=19%  Similarity=0.275  Sum_probs=94.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH-----
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL-----  285 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~-----  285 (361)
                      .+..+..+|+.++..|+|++|++.|+++++                  ++|.+..++.++|.+|.++|++++|+.     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~   65 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK------------------ADPNNVETLLKLGKTYMDIGLPNDAIESLKKF   65 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            467788999999999999999999999999                  555555555555555555555555544     


Q ss_pred             -----------------------------HHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 018089          286 -----------------------------DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       286 -----------------------------~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  336 (361)
                                                   .+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  145 (184)
T 3vtx_A           66 VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ  145 (184)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence                                         455555666777778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018089          337 ELAVAKKKIHERREQE  352 (361)
Q Consensus       337 ~l~~~~~~~~~~~~~~  352 (361)
                      .++.+...+++.+++.
T Consensus       146 ~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A          146 SIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHH
Confidence            8888888777766654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.57  E-value=1.5e-14  Score=113.88  Aligned_cols=117  Identities=8%  Similarity=-0.005  Sum_probs=102.3

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..+|..++..|+|++|+..|+++++..+               .++....+++++|.++..+|++++|+..+++++.
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~   67 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYP---------------NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS   67 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC---------------CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4567899999999999999999999998322               1122337899999999999999999999999999


Q ss_pred             cCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          293 DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       293 ~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      .+|++   ..+++.+|.++..+|++++|+..|+++++..|++..+...+..+...
T Consensus        68 ~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            99999   88999999999999999999999999999999998887766666544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=1.3e-14  Score=125.98  Aligned_cols=124  Identities=17%  Similarity=0.160  Sum_probs=111.0

Q ss_pred             HhhHHHHHhccHHHHh-----------hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC
Q 018089          210 NAVDSIKVFGNEHYKK-----------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG  278 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~-----------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~  278 (361)
                      ..+..+..+|..+...           |++++|+..|+++++                  ++|....++.++|.++..+|
T Consensus        71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~~~~~lg~~~~~~g  132 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER------------------VNPRYAPLHLQRGLVYALLG  132 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcC
Confidence            3466788899999999           999999999999999                  88888999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       279 ~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++++|+..++++++++ +++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++.
T Consensus       133 ~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~  205 (217)
T 2pl2_A          133 ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA  205 (217)
T ss_dssp             CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred             ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            9999999999999999 999999999999999999999999999999999999999999999988888776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=1.6e-14  Score=136.58  Aligned_cols=119  Identities=8%  Similarity=-0.032  Sum_probs=113.1

Q ss_pred             HHHhhHHHHHhccHHHHhhh-HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          208 WMNAVDSIKVFGNEHYKKQD-YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~-y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      ....+..+..+|..+...|+ |++|+..|+++|+                  ++|.+..+|+++|.++..+|++++|+.+
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~------------------l~P~~~~a~~~~g~~~~~~g~~~eAl~~  188 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE------------------EQPKNYQVWHHRRVLVEWLRDPSQELEF  188 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            34457888999999999997 9999999999999                  8899999999999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      |++||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus       189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998877

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.55  E-value=1.6e-14  Score=112.69  Aligned_cols=100  Identities=14%  Similarity=0.060  Sum_probs=89.1

Q ss_pred             HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL---RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka  300 (361)
                      ..|+|++|+..|+++++                  .   +|....++.++|.++..+|++++|+..++++++++|++..+
T Consensus         2 ~~g~~~~A~~~~~~al~------------------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA------------------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHS------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHH------------------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence            36899999999999998                  6   78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      ++++|.++..+|++++|+..|+++++++|+++.+......+
T Consensus        64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999998876544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.54  E-value=3.3e-14  Score=128.70  Aligned_cols=103  Identities=25%  Similarity=0.373  Sum_probs=98.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..++.+|+.++..|+|++|+..|+++++                  .+|.+..++.++|.++.++|++++|+.++++|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   64 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            367789999999999999999999999999                  77888899999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      ++++|++.++++++|.+|..+|++++|+..|+++++++|++
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999999976

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.54  E-value=1.2e-14  Score=141.45  Aligned_cols=118  Identities=25%  Similarity=0.387  Sum_probs=111.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      +.+..+..+|+.+++.|+|++|++.|++|++                  .+|....++.++|.+|.++|++++|+.++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   65 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATR   65 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4577889999999999999999999999999                  7788899999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      |++++|++..+++++|.+|..+|++++|++.|+++++++|++..++..++.+....
T Consensus        66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998884433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=1.7e-13  Score=106.16  Aligned_cols=115  Identities=33%  Similarity=0.495  Sum_probs=107.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|+|++|++.|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   70 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL   70 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            56788899999999999999999999998                  556667889999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      ..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...
T Consensus        71 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888887654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.53  E-value=1.6e-14  Score=118.38  Aligned_cols=95  Identities=12%  Similarity=0.036  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      ++|.+..+++++|.+++++|++++|+..|++++.++|+++.+|+.+|.++..+|+|++|+..|+++++++|+++.++..+
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQEK  353 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k  353 (361)
                      +.+...+++.+++.+
T Consensus       111 g~~~~~lg~~~eA~~  125 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKE  125 (151)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999999888777643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=1.4e-13  Score=115.51  Aligned_cols=122  Identities=17%  Similarity=0.118  Sum_probs=94.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc---------cCCCCc-------cchhhHHHHHHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDE-------GKSSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~nla~~~  274 (361)
                      .+..+..+|..+++.|++++|+..+.+++...+....         ......       .......|....++..+|.++
T Consensus        38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~  117 (184)
T 3vtx_A           38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVY  117 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            4556666777777777777777777777664431100         000000       001135677788999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      .++|++++|+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|+++
T Consensus       118 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          118 DSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            9999999999999999999999999999999999999999999999999999999764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=1.4e-13  Score=118.66  Aligned_cols=106  Identities=20%  Similarity=0.186  Sum_probs=93.9

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~  297 (361)
                      +|..+++.|+|++|+..|+++++                  ++|.+..++.++|.++..+|++++|+..|+++++++|++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQ------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999                  888899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          298 VKALFRQGQAYMA-----------------------------------LNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       298 ~ka~~~~g~~~~~-----------------------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      ..+++++|.+|+.                                   +|+|++|+.+|+++++++|+. .+...+..+.
T Consensus       122 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~  200 (208)
T 3urz_A          122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            9888888877643                                   356889999999999999964 4555555554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.50  E-value=2.1e-13  Score=118.56  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=110.8

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ...+..+|..++..|+|++|+..|+++++                  .+|....++.++|.++..+|++++|+..+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  103 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIK------------------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI  103 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHH------------------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            34567799999999999999999999999                  788889999999999999999999999999999


Q ss_pred             hcCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHER  348 (361)
Q Consensus       292 ~~~p~~~-------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~~  348 (361)
                      .++|++.       .+++.+|.++..+|++++|+..|+++++++|+  +..++..++.+.....+.
T Consensus       104 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          104 KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999998       77999999999999999999999999999999  899999999988766655

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.49  E-value=2e-13  Score=108.19  Aligned_cols=95  Identities=14%  Similarity=0.116  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      ++|.....+.++|.++++.|+|++|+..|++||+++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQEK  353 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k  353 (361)
                      +.+...+++.+++.+
T Consensus        88 g~~~~~~~~~~~A~~  102 (126)
T 4gco_A           88 AACLVAMREWSKAQR  102 (126)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHH
Confidence            999999888777643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.49  E-value=3.6e-13  Score=112.35  Aligned_cols=116  Identities=15%  Similarity=0.210  Sum_probs=106.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHH-HHhcCCH--HHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC-KLKLGDL--KGALLD  286 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~~l~~~--~~Ai~~  286 (361)
                      ..+..+..+|..++..|+|++|+..|+++++                  ..|.+..++.++|.+ +...|++  ++|+..
T Consensus        42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~  103 (177)
T 2e2e_A           42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQ------------------LRGENAELYAALATVLYYQASQHMTAQTRAM  103 (177)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            3567889999999999999999999999999                  778888999999999 8899999  999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +++++.++|++..+++.+|.++..+|++++|+..|+++++++|.+......+..+..
T Consensus       104 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998766655555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.48  E-value=2.5e-13  Score=116.51  Aligned_cols=121  Identities=20%  Similarity=0.172  Sum_probs=110.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  .   ...+++++|.++..+|++++|+..++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------------------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a   63 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD------------------P---HSRICFNIGCMYTILKNMTEAEKAFTRS   63 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------------------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------------------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466788999999999999999999999864                  1   2468999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----------------GIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~----------------~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.++|.+..+++++|.++..+|++++|+..|++++++.|.+.                .++..++.+...+++.+++.
T Consensus        64 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  141 (213)
T 1hh8_A           64 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  141 (213)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence            999999999999999999999999999999999999999877                89999999988887776664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.46  E-value=1.6e-13  Score=104.47  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=96.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ------------------LDPEESKYWLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45578899999999999999999999999                  666677889999999999999999999999999


Q ss_pred             hcCCC--chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Q 018089          292 RDGDD--NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       292 ~~~p~--~~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      .++|.  +..+++.+|.++..+ |++++|++.+++++...|.+.
T Consensus        68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999  999999999999999 999999999999999999763

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.45  E-value=9.1e-13  Score=103.08  Aligned_cols=122  Identities=29%  Similarity=0.376  Sum_probs=111.3

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++...|++++|+..+++++.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   63 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE   63 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4577889999999999999999999998                  5566677899999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .+|.+..+++.+|.++...|++++|+..+++++++.|.+..++..++.+....++.+++.
T Consensus        64 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  123 (136)
T 2fo7_A           64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI  123 (136)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH
Confidence            999999999999999999999999999999999999999999999998887776665553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.45  E-value=5.3e-13  Score=132.43  Aligned_cols=125  Identities=11%  Similarity=0.098  Sum_probs=116.2

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+..+|..++..|+|++|++.|+++++                  ++|.+..++.++|.++..+|++++|+..++
T Consensus        20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A           20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA------------------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------TSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34567889999999999999999999999999                  777788899999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI---HERREQ  351 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~---~~~~~~  351 (361)
                      ++++++|++..+++++|.+|..+|++++|++.|+++++++|++..++..++.+...+   ++.+++
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A  147 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL  147 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence            999999999999999999999999999999999999999999999999999998888   665554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.43  E-value=3.9e-13  Score=109.56  Aligned_cols=94  Identities=12%  Similarity=0.063  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      ++|.+...++++|.+++.+|++++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+...+++..++.
T Consensus        96 g~~~~~~g~~~~A~  109 (148)
T 2vgx_A           96 AECLLQXGELAEAE  109 (148)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            99998888777664

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.43  E-value=7.9e-13  Score=128.54  Aligned_cols=122  Identities=12%  Similarity=0.024  Sum_probs=114.7

Q ss_pred             HHHHHhccHHHHh---------hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc------
Q 018089          213 DSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL------  277 (361)
Q Consensus       213 ~~~~~~G~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l------  277 (361)
                      ..+..+|..+...         |+|++|+..|+++++                  ++|.+..+|+++|.+|..+      
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~~  232 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ------------------MDVLDGRSWYILGNAYLSLYFNTGQ  232 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            5667788888888         999999999999999                  7888889999999999999      


Q ss_pred             --CCHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          278 --GDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       278 --~~~~~Ai~~~~~al~~~p---~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                        |++++|+..+++|++++|   .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..++.
T Consensus       233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999   999999999999999999999999999999999999999999999999888777654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=9.6e-13  Score=115.36  Aligned_cols=98  Identities=21%  Similarity=0.370  Sum_probs=48.3

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3344444455555555555555555544                  3333344445555555555555555555555555


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~  328 (361)
                      ++|++..+++.+|.++..+|++++|+..|+++++++
T Consensus       202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            555555555555555555555555555555555554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.42  E-value=2.4e-12  Score=106.64  Aligned_cols=123  Identities=20%  Similarity=0.208  Sum_probs=112.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  103 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLA------------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA  103 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45678899999999999999999999998                  666677889999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ..+|.+..+++.+|.++..+|++++|+..++++++++|.+..++..++.+....++.+++.
T Consensus       104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A          104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999888877666553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.42  E-value=3.4e-13  Score=136.89  Aligned_cols=123  Identities=11%  Similarity=-0.012  Sum_probs=115.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  .+|.+..+|+++|.++..+|++++|+..|++|
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  493 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAE------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEV  493 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhc------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456788889999999999999999999999                  88899999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++++|++..+++++|.++..+|++++ ++.|+++++++|++..++..++.+...+++.+++.
T Consensus       494 l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          494 LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999 99999999999999999999999998888777664

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=3.4e-12  Score=113.23  Aligned_cols=114  Identities=15%  Similarity=0.058  Sum_probs=105.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  102 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS  102 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3577889999999999999999999999999                  6777788999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      ++.++|.+..+++.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus       103 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998655555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.41  E-value=1.1e-12  Score=127.39  Aligned_cols=123  Identities=17%  Similarity=0.113  Sum_probs=115.6

Q ss_pred             hhHHHHHhccHHHHhhhH-HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      .+..+..+|..++..|+| ++|++.|+++++                  ++|....+|+++|.+|..+|++++|+..|++
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK------------------LEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            467889999999999999 999999999999                  7888889999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------HHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMAL---------NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI--------HERREQE  352 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~---------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~--------~~~~~~~  352 (361)
                      +++++|+ ..+++++|.++..+         |++++|+..|+++++++|++..++..++.+...+        ++.+++.
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            9999999 79999999999999         9999999999999999999999999999999887        6666653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.40  E-value=1e-12  Score=116.79  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=97.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...|..+++.|+|++|+..|+++++..+               .++....+++++|.|++++|+|++|+..++++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~   78 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR---------------THEWAADAQFYLARAYYQNKEYLLAASEYERF   78 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS---------------CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            467789999999999999999999999998222               12233789999999999999999999999999


Q ss_pred             hhcCCCc---hhHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          291 MRDGDDN---VKALFRQGQAYMA--------LNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       291 l~~~p~~---~ka~~~~g~~~~~--------~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      +.++|++   ..+++.+|.++..        +|++++|+..|+++++++|++..+.
T Consensus        79 l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           79 IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            9998854   6799999999999        9999999999999999999987666

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.39  E-value=2.8e-12  Score=109.82  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=96.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|+|++|+..|+++++                  .+|....+++++|.++..+|++++|+.++++++
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   98 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL   98 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            45789999999999999999999999999                  777788999999999999999999999999999


Q ss_pred             hcCCCch----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          292 RDGDDNV----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       292 ~~~p~~~----------------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      .+.|.+.                .+++++|.++..+|++++|+..|+++++++|++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            9888766                9999999999999999999999999999999764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.38  E-value=4.6e-12  Score=116.32  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=108.1

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .....|..+++.|++++|+..|++++...+.              .......++.++|.++.++|++++|+..+++++.+
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS--------------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3446699999999999999999999984321              12234466889999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +|++..+++.+|.++..+|++++|+..|+++++++|++..++..+..+...+++.+
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999998887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=5.9e-12  Score=110.26  Aligned_cols=139  Identities=15%  Similarity=0.121  Sum_probs=76.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcccc----------------CCCCccc-------hhh----------
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK----------------EGIDEGK-------SSS----------  258 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~----------------~~~~~~~-------~~~----------  258 (361)
                      +..+..+|..++..|+|++|+..|++++++.+...+.                .....+.       ...          
T Consensus        38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  117 (258)
T 3uq3_A           38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK  117 (258)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence            4567788899999999999999999998854322100                0000000       001          


Q ss_pred             ----------------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          259 ----------------LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       259 ----------------~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~  322 (361)
                                      ..|....++.++|.++..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+
T Consensus       118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                            2233444455555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          323 KALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       323 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      ++++++|++..++..++.+...+++.++
T Consensus       198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~  225 (258)
T 3uq3_A          198 KAIEKDPNFVRAYIRKATAQIAVKEYAS  225 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence            5555555555555555555554444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=2.2e-12  Score=106.85  Aligned_cols=124  Identities=19%  Similarity=0.158  Sum_probs=113.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~   68 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD------------------ADAFDVDVALHLGIAYVKTGAVDRGTELLERS   68 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC------------------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466788899999999999999999999988                  45556788999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +..+|.+..+++.+|.++...|++++|+..++++++++|.+..++..++.+....++.+++.
T Consensus        69 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  130 (186)
T 3as5_A           69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI  130 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999888777666553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.38  E-value=2e-12  Score=119.93  Aligned_cols=123  Identities=17%  Similarity=0.175  Sum_probs=106.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..+...|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  278 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  278 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56677788899999999999999999988                  666677889999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-----------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-----------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .++|++..+++.+|.++..+|++++|+..|+++++++|++           ..++..++.+...+++.+++.
T Consensus       279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            9999999999999999999999999999999999998888           788888888888877655543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.37  E-value=4.8e-13  Score=135.86  Aligned_cols=115  Identities=14%  Similarity=0.010  Sum_probs=108.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|++.|++|++                  ++|.+..+++++|.++.++|++++ +.+|++|
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a  526 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLD------------------TFPGELAPKLALAATAELAGNTDE-HKFYQTV  526 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence            456778899999999999999999999999                  888889999999999999999999 9999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      ++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus       527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999998888633

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.37  E-value=7.3e-12  Score=109.01  Aligned_cols=112  Identities=15%  Similarity=0.140  Sum_probs=97.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|+|++|+..|+++++..+               ..+....+++++|.++.++|+|++|+..+++++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   68 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI   68 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            56788999999999999999999999998322               123346789999999999999999999999999


Q ss_pred             hcCCCchh---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          292 RDGDDNVK---ALFRQGQAYMA------------------LNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       292 ~~~p~~~k---a~~~~g~~~~~------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      +.+|++..   +++.+|.++..                  +|++++|+..|+++++..|++..+...+
T Consensus        69 ~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~  136 (225)
T 2yhc_A           69 RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT  136 (225)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred             HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            99999875   89999999986                  5799999999999999999987665433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.2e-13  Score=105.48  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=81.0

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|++.|+++++                  ..|....++.++|.|+.++|++++|+..++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------------------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            456788889999999999999999999988                  67777788899999999999999999999999


Q ss_pred             hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~  323 (361)
                      ++++|++      ..+++++|.++..+|++++|+..+++
T Consensus        65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9999988      88889999999888888877766554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.37  E-value=6.5e-12  Score=109.21  Aligned_cols=122  Identities=20%  Similarity=0.185  Sum_probs=97.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  118 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALE------------------LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL  118 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            56677888999999999999999999988                  555566777888888888888888888888888


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ..+|.+..+++.+|.++..+|++++|+..++++++++|.+..++..++.+....++.+++
T Consensus       119 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888888888888888888888888888877777777777666655444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.37  E-value=2.3e-12  Score=119.74  Aligned_cols=123  Identities=17%  Similarity=0.185  Sum_probs=99.8

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..+...|+|++|+..|+++++                  ..|....+|.++|.++..+|++++|+..+++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT------------------VRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45677788888888888888888888888                  666677788888888888888888888888888


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------------DGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------------~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .++|++..+++.+|.+|..+|++++|+..|+++++++|.            +..++..++.+...+++.+..+
T Consensus       275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  347 (365)
T 4eqf_A          275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ  347 (365)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence            888888888888888888888888888888888888876            3567777777777666555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.36  E-value=6.1e-13  Score=110.99  Aligned_cols=120  Identities=15%  Similarity=0.089  Sum_probs=105.3

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +...++.++..|+|++|+..|++++.                  .+|....++.++|.++..+|++++|+..+++++.++
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   74 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR   74 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHH------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            34456667889999999999999999                  777788899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQA-YMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       295 p~~~ka~~~~g~~-~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |++..+++.+|.+ +...|++  ++|+..|+++++++|++..++..++.+....++..++.
T Consensus        75 p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  135 (177)
T 2e2e_A           75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI  135 (177)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH
Confidence            9999999999999 8899999  99999999999999999999999999988887776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.36  E-value=8.8e-12  Score=110.69  Aligned_cols=119  Identities=13%  Similarity=0.175  Sum_probs=105.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh--------cCCHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--------LGDLKGA  283 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------l~~~~~A  283 (361)
                      +..+..+|..+++.|+|++|+..|+++++..|               .++....+++++|.|++.        +|++++|
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A  116 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---------------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKA  116 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---------------CCchhHHHHHHHHHHHHHhcccccccchhHHHH
Confidence            56789999999999999999999999999332               123567889999999999        9999999


Q ss_pred             HHHHHHHhhcCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 018089          284 LLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKK  343 (361)
Q Consensus       284 i~~~~~al~~~p~~~ka~-----------------~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~  343 (361)
                      +..+++++..+|++..+.                 +.+|.+|..+|++++|+..|+++++..|++   ..++..++.+..
T Consensus       117 ~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          117 IEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence            999999999999987666                 899999999999999999999999999984   568888888877


Q ss_pred             HH
Q 018089          344 KI  345 (361)
Q Consensus       344 ~~  345 (361)
                      .+
T Consensus       197 ~~  198 (261)
T 3qky_A          197 AY  198 (261)
T ss_dssp             HH
T ss_pred             Hh
Confidence            66

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.36  E-value=3e-12  Score=118.99  Aligned_cols=119  Identities=14%  Similarity=0.132  Sum_probs=104.3

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      ..+|..+...|++++|+..|+++++                  ..|.  ...++.++|.++..+|++++|+..+++++.+
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  242 (365)
T 4eqf_A          181 RRMSKSPVDSSVLEGVKELYLEAAH------------------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV  242 (365)
T ss_dssp             --------CCHHHHHHHHHHHHHHH------------------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHH------------------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3458899999999999999999999                  5565  6788999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +|++..+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++.
T Consensus       243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999998888766653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=9.1e-12  Score=109.29  Aligned_cols=121  Identities=20%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..|++++|++.|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  132 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALA------------------SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS  132 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            44566677777777788888888777777                  334444555666666666666666666666666


Q ss_pred             h--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          292 R--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       292 ~--~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      .  .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.++
T Consensus       133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence            5  5555556666666666666666666666666666666655555555555555444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.35  E-value=2.7e-12  Score=103.44  Aligned_cols=94  Identities=11%  Similarity=0.058  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .+|.....++++|.+++..|++++|+..+++++.++|++..+|+.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+...+++..++.
T Consensus        93 g~~~~~~g~~~~A~  106 (142)
T 2xcb_A           93 AECHLQLGDLDGAE  106 (142)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            99998888776654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.35  E-value=1.1e-11  Score=106.10  Aligned_cols=122  Identities=15%  Similarity=0.023  Sum_probs=82.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~Ai~~~~~a  290 (361)
                      +..+..+|..+...|++++|++.|+++++                  ..|....++.++|.++..+ |++++|+..++++
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALS------------------IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA  103 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34556667777777777777777777776                  4444555667777777777 7777777777777


Q ss_pred             hh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~--~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.  .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A          104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            76  55555667777777777777777777777777777777766666666666655554444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.35  E-value=4.7e-12  Score=110.14  Aligned_cols=123  Identities=22%  Similarity=0.203  Sum_probs=111.2

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  151 (243)
T 2q7f_A           90 AATAYYGAGNVYVVKEMYKEAKDMFEKALR------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRA  151 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            356678899999999999999999999998                  56666778999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++..++
T Consensus       152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            9999999999999999999999999999999999999999999999999988777665554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.35  E-value=6.6e-12  Score=107.58  Aligned_cols=125  Identities=16%  Similarity=0.051  Sum_probs=113.7

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   67 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALK------------------SDPKNELAWLVRAEIYQYLKVNDKAQESFRQ   67 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3567889999999999999999999999999                  6666788999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMAL-NDVDAAVESFEKALK--LEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++.++|.+..+++.+|.++..+ |++++|+..|+++++  .+|.+..++..++.+....++.+++.
T Consensus        68 a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  133 (225)
T 2vq2_A           68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE  133 (225)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999 999999999999999  66777888999998888777666553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.35  E-value=4.1e-12  Score=119.19  Aligned_cols=121  Identities=22%  Similarity=0.237  Sum_probs=86.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..+.+.|++++|++.|+++++                  .+|....+|.++|.++.++|++++|+..++++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  127 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALR------------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSA  127 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466788899999999999999999999998                  55555666666777666666666666666666


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +.++|++..++..+|.++..+|++++|+..|+++++++|++..++..++.+....++..
T Consensus       128 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  186 (388)
T 1w3b_A          128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW  186 (388)
T ss_dssp             HHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            66666666666666666666666666666666666666666666666666555444433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.35  E-value=4.3e-12  Score=115.00  Aligned_cols=123  Identities=10%  Similarity=0.049  Sum_probs=107.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF-  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~-  289 (361)
                      .+..+...|..+...|++++|+..|+++++                  .+|.+..+++++|.++..+|++++|+..+++ 
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ------------------LSNQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHH------------------hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            356678899999999999999999999999                  8888889999999999999998887655554 


Q ss_pred             ---------------------------------HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHH
Q 018089          290 ---------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGI  334 (361)
Q Consensus       290 ---------------------------------al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~  334 (361)
                                                       ++..+|++..+++.+|.++...|++++|++.|+++++++|++  ..+
T Consensus       178 ~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          178 PLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             chhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence                                             466789999999999999999999999999999999999998  889


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018089          335 KKELAVAKKKIHERREQ  351 (361)
Q Consensus       335 ~~~l~~~~~~~~~~~~~  351 (361)
                      +..+..+...+++..++
T Consensus       258 ~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          258 RXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCCCcH
Confidence            99999998887754443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.35  E-value=2.4e-12  Score=114.27  Aligned_cols=119  Identities=12%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .+...|..++..|+|++|+..|+++++                  .+|....++.++|.++..+|++++|+..+++++. 
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-   65 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEA------------------KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-   65 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHH------------------TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence            455667777777777777777777776                  3444444566666666666666666666666666 


Q ss_pred             CCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          294 GDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       294 ~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .|.+    ..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus        66 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  127 (272)
T 3u4t_A           66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA  127 (272)
T ss_dssp             TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence            2222    233566666666666666666666666666666666666666666555554444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.34  E-value=6.5e-12  Score=117.83  Aligned_cols=140  Identities=16%  Similarity=0.131  Sum_probs=85.2

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc-----------cCCCCccc-----hhhHHHHHHHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KEGIDEGK-----SSSLRKTKSQIFTNSSACKL  275 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~nla~~~~  275 (361)
                      +..+..+|..+...|++++|+..|++++++-+....           ........     .....|....++.++|.++.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            456677788888888888888888888773221100           00000000     01234445566666666666


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       276 ~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666655554444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.34  E-value=6.3e-12  Score=115.36  Aligned_cols=113  Identities=20%  Similarity=0.254  Sum_probs=105.9

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .++.+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   63 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   63 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            357789999999999999999999999999                  77778899999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP---NDGGIKKELAVA  341 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p---~~~~~~~~l~~~  341 (361)
                      +.++|++..+++.+|.++..+|++++|+..|+++++++|   .+..++..+..+
T Consensus        64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  117 (359)
T 3ieg_A           64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA  117 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH
Confidence            999999999999999999999999999999999999999   888888877543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.34  E-value=7.2e-12  Score=104.68  Aligned_cols=121  Identities=13%  Similarity=0.112  Sum_probs=94.4

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH----
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE----  288 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~----  288 (361)
                      ..+...|..++..|++++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..++    
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~   68 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSD------------------ELQSRGDVKLAKADCLLETKQFELAQELLATIPL   68 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCH------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence            3456677778888888888888888877                  777777778888888777777776665444    


Q ss_pred             ------------------------------HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHH
Q 018089          289 ------------------------------FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKK  336 (361)
Q Consensus       289 ------------------------------~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~  336 (361)
                                                    ++++++|++..+++.+|.++..+|++++|+..|+++++++|+.  ..++.
T Consensus        69 ~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~  148 (176)
T 2r5s_A           69 EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK  148 (176)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred             ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence                                          4455677888899999999999999999999999999999875  56888


Q ss_pred             HHHHHHHHHHHHHHH
Q 018089          337 ELAVAKKKIHERREQ  351 (361)
Q Consensus       337 ~l~~~~~~~~~~~~~  351 (361)
                      .++.+...+++..++
T Consensus       149 ~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A          149 TFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHhCCCCcH
Confidence            888888777655443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.33  E-value=7.6e-12  Score=96.69  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 018089          230 MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYM  309 (361)
Q Consensus       230 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~  309 (361)
                      .|++.|+++++                  .+|.+..+++++|.++..+|++++|+..+++++.++|++..+++.+|.++.
T Consensus         3 ~a~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            3 AITERLEAMLA------------------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CHHHHHHHHHT------------------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            57889999998                  677778899999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHH
Q 018089          310 ALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHE  347 (361)
Q Consensus       310 ~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~  347 (361)
                      .+|++++|+..|+++++++|.  +......+......+.+
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence            999999999999999999984  44555555555444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.32  E-value=9.7e-12  Score=110.23  Aligned_cols=122  Identities=16%  Similarity=0.083  Sum_probs=108.8

Q ss_pred             HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~  296 (361)
                      .++..+...++|++|+..|+++++..+              ...|....++.++|.++..+|++++|+..+++++.++|.
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   75 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILASRA--------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD   75 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHTSSC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             ceeeccCccchHHHHHHHHHHHHhccc--------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence            355566678999999999999998311              025678899999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       297 ~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++..++.
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  131 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ  131 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH
Confidence            99999999999999999999999999999999999999999999988877766653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.32  E-value=1.4e-11  Score=111.80  Aligned_cols=129  Identities=9%  Similarity=-0.093  Sum_probs=106.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~Ai~~~~~  289 (361)
                      .+..+.++|+.+.+.|+|++|+.+|++|+++.+...            .......++.++|.+|..+ |++++|+.+|++
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------------QFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            477889999999999999999999999999553220            1123467899999999995 999999999999


Q ss_pred             HhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-------IKKELAVAKKKIHERREQ  351 (361)
Q Consensus       290 al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~-------~~~~l~~~~~~~~~~~~~  351 (361)
                      |+.+.|..      ..++.++|.++..+|+|++|+..|++++++.|++..       ++..++.+...+++..++
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  218 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA  218 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99998754      578999999999999999999999999999998754       456677777666655554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.5e-11  Score=96.42  Aligned_cols=91  Identities=14%  Similarity=0.094  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      .....+.++|.++++.|+|++|+..+++++.++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 018089          342 KKKIHERREQE  352 (361)
Q Consensus       342 ~~~~~~~~~~~  352 (361)
                      ...+++..++.
T Consensus        82 ~~~~~~~~~A~   92 (126)
T 3upv_A           82 QIAVKEYASAL   92 (126)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHHhCHHHHH
Confidence            98888776664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.32  E-value=9e-12  Score=113.07  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=113.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVE------------------LRPDDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356678889999999999999999999998                  66777789999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------------DGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------------~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.++|++..+++.+|.++..+|++++|+..|+++++++|.            +..++..++.+...+++.+++.
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999            7889999999988887766653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.32  E-value=1.5e-11  Score=109.08  Aligned_cols=118  Identities=22%  Similarity=0.224  Sum_probs=104.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVD------------------RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            45578899999999999999999999998                  677777899999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      .++|.+..+++.+|...+..+++++|+..|+++++++|++..++..++.+...+.+
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            99999999999999444445699999999999999999999888888888776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.32  E-value=7.8e-12  Score=109.72  Aligned_cols=124  Identities=15%  Similarity=0.133  Sum_probs=114.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   97 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALE------------------IDPSSADAHAALAVVFQTEMEPKLADEEYRKA   97 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            477889999999999999999999999998                  66677889999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK--LEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.++|.+..+++.+|.++..+|++++|+..|+++++  .+|.+..++..++.+....++.+++.
T Consensus        98 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  161 (252)
T 2ho1_A           98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK  161 (252)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999  88888899999998887777665553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.31  E-value=2e-11  Score=108.17  Aligned_cols=133  Identities=17%  Similarity=0.123  Sum_probs=114.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|++++++......          ...+....++.++|.++..+|++++|+..+++
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  110 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR  110 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC----------CcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            35777889999999999999999999999984421100          01367788999999999999999999999999


Q ss_pred             Hhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++.+        +|....+++++|.++..+|++++|+..|++++++        +|....++..++.+....++.+++.
T Consensus       111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  189 (283)
T 3edt_B          111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE  189 (283)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9988        5778999999999999999999999999999999        7777788889999888887766653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.31  E-value=2.6e-11  Score=115.61  Aligned_cols=118  Identities=20%  Similarity=0.218  Sum_probs=104.9

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      ...|..+++.|++++|+..|++++++.+.              .......++.++|.++.++|++++|+..+++++.++|
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPS--------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            44599999999999999999999983321              1112356899999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ++..+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+++
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999988776654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.30  E-value=1.8e-11  Score=118.32  Aligned_cols=107  Identities=23%  Similarity=0.297  Sum_probs=99.8

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      .+.+..+..+|+.+++.|+|++|+..|+++++                  .+| +..++.++|.|++++|++++|+..++
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p-~~~~~~~la~~~~~~g~~~~A~~~~~   63 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALE------------------LKE-DPVFYSNLSACYVSVGDLKKVVEMST   63 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH------------------HCC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------cCc-cHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            45788999999999999999999999999999                  555 47889999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  334 (361)
                      ++++++|++..+++.+|.++..+|++++|+..|+++++++|.+...
T Consensus        64 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  109 (514)
T 2gw1_A           64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS  109 (514)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred             HHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence            9999999999999999999999999999999999999999976543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.29  E-value=3.5e-11  Score=114.64  Aligned_cols=115  Identities=20%  Similarity=0.266  Sum_probs=107.1

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      +..+..+..+|..+++.|+|++|+..|+++++                  ..|....+++++|.++..+|++++|+..++
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~   84 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLT   84 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34678899999999999999999999999998                  677778999999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVA  341 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~  341 (361)
                      +++.++|++..+++.+|.+|..+|++++|+..|+++++++|.+.   .++..+..+
T Consensus        85 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988   777766544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.29  E-value=1.2e-11  Score=97.78  Aligned_cols=92  Identities=13%  Similarity=0.088  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH------
Q 018089          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG------  333 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~------  333 (361)
                      .+....++.++|.+++++|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..      
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999997653      


Q ss_pred             -HHHHHHHHHHHHHHHHHH
Q 018089          334 -IKKELAVAKKKIHERREQ  351 (361)
Q Consensus       334 -~~~~l~~~~~~~~~~~~~  351 (361)
                       ++..++.+...+++.+++
T Consensus        84 ~~~~~lg~~~~~~~~~~~A  102 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLA  102 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHH
Confidence             455566666555555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.29  E-value=1.5e-11  Score=111.65  Aligned_cols=124  Identities=19%  Similarity=0.077  Sum_probs=111.8

Q ss_pred             hhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      .+..+..+|..++..| ++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  150 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATT------------------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFT  150 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHT------------------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4567888999999999 99999999999998                  5666678899999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++.+.|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++.
T Consensus       151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~  213 (330)
T 3hym_B          151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE  213 (330)
T ss_dssp             HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH
Confidence            999999999999999999999999999999999999999999999999999888777666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.29  E-value=1.6e-11  Score=111.54  Aligned_cols=119  Identities=17%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +..+|..+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++.+.
T Consensus       162 ~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  223 (330)
T 3hym_B          162 MLYIGLEYGLTNNSKLAERFFSQALS------------------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI  223 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence            33344555555555555555555554                  344455667777777777777777777777777664


Q ss_pred             ---------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          295 ---------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       295 ---------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                               |.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  289 (330)
T 3hym_B          224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA  289 (330)
T ss_dssp             TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence                     555667777777777777777777777777777777777777777777666665554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.28  E-value=2.5e-11  Score=110.18  Aligned_cols=117  Identities=13%  Similarity=0.049  Sum_probs=66.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS--ACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla--~~~~~l~~~~~Ai~~~~~  289 (361)
                      ...+..+|..+.+.|++++|++.|+++++.-                  |.........+  .++...|++++|+..+++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~  191 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQD------------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQE  191 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------------------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            4567778888899999999999999988732                  22111111111  111223555555555555


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      ++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.+++.+...++
T Consensus       192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            555555555555555555555555555555555555555555555555554444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.28  E-value=2.1e-11  Score=106.03  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=106.1

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh---------------
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK---------------  276 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---------------  276 (361)
                      ...+..+|..+++.|+|++|+..|+++++.-|.               ++....+++++|.++..               
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---------------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~  105 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---------------HPNIDYVMYMRGLTNMALDDSALQGFFGVDRS  105 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTTHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---------------CCcHHHHHHHHHHHHHhhhhhhhhhhhccchh
Confidence            356888999999999999999999999983321               11233478888888876               


Q ss_pred             ---cCCHHHHHHHHHHHhhcCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---H
Q 018089          277 ---LGDLKGALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPNDG---G  333 (361)
Q Consensus       277 ---l~~~~~Ai~~~~~al~~~p~~~ka~-----------------~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~  333 (361)
                         +|++++|+..++++++.+|++..++                 +.+|.+|...|++++|+..|+++++..|+++   .
T Consensus       106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  185 (225)
T 2yhc_A          106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD  185 (225)
T ss_dssp             --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence               6799999999999999999997665                 6789999999999999999999999999986   6


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 018089          334 IKKELAVAKKKIHERREQE  352 (361)
Q Consensus       334 ~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++..++.+...+++..++.
T Consensus       186 a~~~l~~~~~~~g~~~~A~  204 (225)
T 2yhc_A          186 ALPLMENAYRQMQMNAQAE  204 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHH
Confidence            7888888888888777664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.28  E-value=6.4e-11  Score=92.82  Aligned_cols=88  Identities=20%  Similarity=0.180  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      .++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 018089          346 HERREQEK  353 (361)
Q Consensus       346 ~~~~~~~k  353 (361)
                      ++..++..
T Consensus        99 g~~~~A~~  106 (121)
T 1hxi_A           99 HNANAALA  106 (121)
T ss_dssp             HHHHHHHH
T ss_pred             CCHHHHHH
Confidence            88877653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.27  E-value=4e-11  Score=93.52  Aligned_cols=102  Identities=30%  Similarity=0.462  Sum_probs=94.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ...+..+|..++..|++++|+..|++++.                  ..|....++.++|.++..+|++++|+..+++++
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   96 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL   96 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45567789999999999999999999998                  556667789999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      ...|.+..+++.+|.++..+|++++|+..|+++++++|.+
T Consensus        97 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           97 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999863

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.27  E-value=3.7e-11  Score=111.21  Aligned_cols=117  Identities=16%  Similarity=0.159  Sum_probs=107.9

Q ss_pred             HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      ..|..+ ..|++++|+..|+++++                  ..|.  ...++.++|.++..+|++++|+..+++++.++
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  247 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVR------------------LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR  247 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHH------------------HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHH------------------hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            455555 99999999999999999                  6666  67899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |++..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++.+++.
T Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  305 (368)
T 1fch_A          248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV  305 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999998888777664

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.25  E-value=8.4e-11  Score=86.07  Aligned_cols=83  Identities=31%  Similarity=0.456  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      ....++.++|.++..++++++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHH
Q 018089          342 KKK  344 (361)
Q Consensus       342 ~~~  344 (361)
                      ...
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.24  E-value=9.1e-11  Score=89.20  Aligned_cols=84  Identities=12%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKK  336 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~  336 (361)
                      ....+.++|.+++.+|+|++|+..++++++++|++..+++++|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999998      66777


Q ss_pred             HHHHHHHHHH
Q 018089          337 ELAVAKKKIH  346 (361)
Q Consensus       337 ~l~~~~~~~~  346 (361)
                      .++.+...++
T Consensus        83 ~~~~~~~~~~   92 (111)
T 2l6j_A           83 RLELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777666554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.24  E-value=6e-11  Score=113.98  Aligned_cols=127  Identities=17%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|.+++..|+|++|+++|++|+++.+......         .++.....|.|+|.+|..+|++++|+.+++++
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~---------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka  120 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ---------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV  120 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG---------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc---------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            366778899999999999999999999999765322111         24455678999999999999999999999999


Q ss_pred             hhcC--------CCchhHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          291 MRDG--------DDNVKALFRQGQAYMAL--NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~--------p~~~ka~~~~g~~~~~~--~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      +.+.        +..+.++..+|.++...  ++|++|+.+|+++++++|+++.++..++.+...+.
T Consensus       121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            9763        34578888898887665  47999999999999999999999988887765544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.23  E-value=8e-11  Score=96.90  Aligned_cols=93  Identities=16%  Similarity=0.137  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  340 (361)
                      +.....+.++|.+++++|+|++|+..+++++.++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018089          341 AKKKIHERREQEK  353 (361)
Q Consensus       341 ~~~~~~~~~~~~k  353 (361)
                      +...+++.+++.+
T Consensus        88 ~~~~~g~~~~A~~  100 (164)
T 3sz7_A           88 ARFDMADYKGAKE  100 (164)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHccCHHHHHH
Confidence            9998887777643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.23  E-value=4.9e-11  Score=108.14  Aligned_cols=131  Identities=16%  Similarity=0.083  Sum_probs=106.9

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      +.+..+...|+.+...|+|++|+++|.+|+++.+..            ...+....+|.|+|.+|.++|++++|+.++++
T Consensus        35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  102 (292)
T 1qqe_A           35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN  102 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            345556667888999999999999999999954322            01234578999999999999999999999999


Q ss_pred             HhhcCCCc------hhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDN------VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~~p~~------~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |+.+.|..      ..++.++|.+|... |++++|+..|++|+++.|.+      ..++..++.+...+++..++.
T Consensus       103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A          103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99988754      57899999999995 99999999999999998864      356777788877777666653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.22  E-value=4.1e-11  Score=118.80  Aligned_cols=110  Identities=17%  Similarity=0.156  Sum_probs=87.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~  304 (361)
                      .|++++|++.|+++++                  .+|....++.++|.++..+|++++|+..++++++++|++..+++++
T Consensus         2 ~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   63 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL   63 (568)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4789999999999998                  8888889999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       305 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |.+|..+|++++|+..|+++++++|++..++..++.+...+++.+++.
T Consensus        64 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  111 (568)
T 2vsy_A           64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA  111 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999998888776664

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.21  E-value=6.4e-11  Score=96.80  Aligned_cols=91  Identities=19%  Similarity=0.181  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-------chh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-------NVK-----ALFRQGQAYMALNDVDAAVESFEKALKL--  327 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~-------~~k-----a~~~~g~~~~~~~~~~~A~~~~~~a~~l--  327 (361)
                      .....+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|++|+++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            35677899999999999999999999999999999       443     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHHHHHHHHH
Q 018089          328 -----EPNDGGIK----KELAVAKKKIHERREQE  352 (361)
Q Consensus       328 -----~p~~~~~~----~~l~~~~~~~~~~~~~~  352 (361)
                           +|++..+|    ..++.+...+++.+++.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl  122 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAM  122 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH
Confidence                 99999999    99999999988877764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.20  E-value=9.8e-11  Score=103.59  Aligned_cols=109  Identities=12%  Similarity=0.065  Sum_probs=95.4

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+..+|..+...|+|++|++.|++++++......          ...|....++.++|.++..+|++++|+..++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  151 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYR  151 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345778899999999999999999999999995432100          0146788999999999999999999999999


Q ss_pred             HHhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       289 ~al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      +++.+        +|....+++.+|.++..+|++++|+..|++++++
T Consensus       152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99998        7788999999999999999999999999999987

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.20  E-value=7.8e-11  Score=88.96  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKK  336 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~  336 (361)
                      .+|.+..+++++|.+++.+|++++|+..++++++++|++..+|+.+|.+|..+|++++|+..|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            356778899999999999999999999999999999999999999999999999999999999999999874  344444


Q ss_pred             HHHHH
Q 018089          337 ELAVA  341 (361)
Q Consensus       337 ~l~~~  341 (361)
                      .+..+
T Consensus        82 ~l~~~   86 (100)
T 3ma5_A           82 ELQDA   86 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.20  E-value=1.6e-11  Score=113.82  Aligned_cols=110  Identities=18%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-------
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-------  297 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~-------  297 (361)
                      .++|++|++.|++++.                  ..|....++.++|.+++++|+|++|+..|++|+.++|.+       
T Consensus       126 L~~~~~A~~~~~~a~~------------------~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~  187 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSE------------------EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE  187 (336)
T ss_dssp             EEEEECCCCGGGCCHH------------------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH
T ss_pred             EeecccccchhcCCHH------------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHH
Confidence            4566777888888887                  888999999999999999999999999999999999998       


Q ss_pred             --------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          298 --------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       298 --------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                              ..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.+++.
T Consensus       188 ~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  250 (336)
T 1p5q_A          188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR  250 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence                    6999999999999999999999999999999999999999999998888777664

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.20  E-value=1.1e-10  Score=105.90  Aligned_cols=97  Identities=10%  Similarity=0.041  Sum_probs=89.7

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHH
Q 018089          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~  302 (361)
                      ...|++++|+..|+++++                  ..|.+..+++++|.++.++|++++|+..+++++.++|+++.+++
T Consensus       177 ~~~~~~~eA~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMAD------------------KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hCchHHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            345899999999999999                  67778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHH-HHHHHHHHHhhCCCCHHHHHH
Q 018089          303 RQGQAYMALNDVDA-AVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       303 ~~g~~~~~~~~~~~-A~~~~~~a~~l~p~~~~~~~~  337 (361)
                      ++|.++..+|++++ +.++++++++++|+++.+...
T Consensus       239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999976 568999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.20  E-value=6.6e-11  Score=115.29  Aligned_cols=143  Identities=15%  Similarity=0.030  Sum_probs=98.8

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc----------cccCCCCccc-----hhhHHHHHHHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC----------WEKEGIDEGK-----SSSLRKTKSQIFTNSSAC  273 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~----------~~~~~~~~~~-----~~~~~~~~~~~~~nla~~  273 (361)
                      ...+..+..+|..++..|++++|+..|+++++.-+..          ..........     .....|....++.++|.+
T Consensus       240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  319 (537)
T 3fp2_A          240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM  319 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            3346666777777777777777777777777643210          0000000000     012445566778888888


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       274 ~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++..++
T Consensus       320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888777776665554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.19  E-value=1e-10  Score=105.97  Aligned_cols=114  Identities=13%  Similarity=0.154  Sum_probs=106.7

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka  300 (361)
                      .+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++..+|++..+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  208 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALE------------------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL  208 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            58889999999999999998                  666778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++.+++.
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999999999999999999999999999988877766653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.18  E-value=1.5e-10  Score=112.75  Aligned_cols=126  Identities=17%  Similarity=0.092  Sum_probs=107.8

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      +...+..++..|.+......|.+|+.++....           ...|. ..++.++|.++..+|++++|+..+++++..+
T Consensus       239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  306 (537)
T 3fp2_A          239 RENAALALCYTGIFHFLKNNLLDAQVLLQESI-----------NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN  306 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-----------hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence            34456667777777777777888888765442           23444 6789999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |++..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++..++.
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  364 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE  364 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999988887766654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.18  E-value=1.7e-10  Score=108.23  Aligned_cols=133  Identities=11%  Similarity=0.068  Sum_probs=111.6

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+..+|..++..|++++|+.+|.+|+++.+...           ...+....++.++|.+|..+|++++|+..++
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  208 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE-----------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQ  208 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34678889999999999999999999999999665321           0255677899999999999999999999999


Q ss_pred             HHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALK-----LE-PNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~-----l~-p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +|+.+.+..      ..+++++|.+|..+|++++|+.+|+++++     .+ |....++..++.+...+++.+++.
T Consensus       209 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  284 (383)
T 3ulq_A          209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH  284 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence            999885533      36999999999999999999999999999     46 777788888888888777666553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.18  E-value=2.9e-10  Score=91.55  Aligned_cols=132  Identities=15%  Similarity=0.168  Sum_probs=106.7

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+..+|..++..|+|++|+.+|++++++.+..            ........++.++|.++..+|++++|+..++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   73 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERIAYSNLGNAYIFLGEFETASEYYK   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3467888999999999999999999999999965432            0123445789999999999999999999999


Q ss_pred             HHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +++.+.+..      ..+++++|.++..+|++++|+..+++++++.+..      ..+...++.+....++.+++.
T Consensus        74 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A           74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence            999876543      6789999999999999999999999999884322      346667777776666655553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.17  E-value=3.1e-10  Score=110.23  Aligned_cols=141  Identities=10%  Similarity=0.017  Sum_probs=112.8

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai  284 (361)
                      ..+....+....+.+..+..+|+|++|+..|+++|++......          ..+|.....+.|+|.+|..+|+|++|+
T Consensus       302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg----------~~Hp~~a~~~~nLa~~y~~~g~~~eA~  371 (490)
T 3n71_A          302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA----------DTNLYVLRLLSIASEVLSYLQAYEEAS  371 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC----------TTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            4455566777778888888999999999999999996543311          246778899999999999999999999


Q ss_pred             HHHHHHhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHH---HHHHHHHHHHHHHH
Q 018089          285 LDTEFAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGI---KKELAVAKKKIHER  348 (361)
Q Consensus       285 ~~~~~al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~---~~~l~~~~~~~~~~  348 (361)
                      ..++++|.+        +|+-...+.++|.+|..+|+|++|+..|++|+++     -|+++.+   ..+|..++.+++.+
T Consensus       372 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~  451 (490)
T 3n71_A          372 HYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF  451 (490)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence            999999954        3445789999999999999999999999999985     5677654   45666677666766


Q ss_pred             HHHHHHH
Q 018089          349 REQEKKQ  355 (361)
Q Consensus       349 ~~~~k~~  355 (361)
                      ++++...
T Consensus       452 ~~ae~~~  458 (490)
T 3n71_A          452 RQNEFMY  458 (490)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.16  E-value=1.8e-10  Score=91.17  Aligned_cols=94  Identities=11%  Similarity=0.052  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .++..+..+.++|.+++.+|+|++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+...+++..++.
T Consensus        84 ~~~~~~~~~~~~A~   97 (137)
T 3q49_B           84 GQCQLEMESYDEAI   97 (137)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhHHHHH
Confidence            99998887776653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.16  E-value=1.8e-11  Score=91.73  Aligned_cols=89  Identities=18%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~Ai~~~~~al~~~p  295 (361)
                      ..|..++..|+|++|+..|+++++                  ..|.... ++.++|.++..+|++++|+..++++++++|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQ------------------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH------------------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            345555555555555555555555                  4444444 555555555555555555555555555555


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      ++..++++        +.+.+|+..|+++..++|++
T Consensus        67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            55555433        34445555555555555543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.16  E-value=2.3e-10  Score=113.18  Aligned_cols=123  Identities=15%  Similarity=0.030  Sum_probs=107.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..+.+.|++++|++.|+++++                  ..|.+..+|++++.+|.+.|++++|+..++++
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  433 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSST------------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA  433 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            355667788888889999999999999888                  66677788999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +..+|.+..+++.+|.+|...|++++|++.|+++++++|.+..++..++.+....++.+++
T Consensus       434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  494 (597)
T 2xpi_A          434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA  494 (597)
T ss_dssp             HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            9999999999999999999999999999999999999999999998888888777766655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.15  E-value=1.5e-10  Score=84.72  Aligned_cols=84  Identities=26%  Similarity=0.323  Sum_probs=78.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++.++|++++|+..++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467788999999999999999999999999                  66777889999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcC
Q 018089          291 MRDGDDNVKALFRQGQAYMALN  312 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~  312 (361)
                      +.++|.+..+++.+|.++..+|
T Consensus        70 ~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           70 LELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.14  E-value=3.4e-10  Score=101.77  Aligned_cols=135  Identities=13%  Similarity=0.071  Sum_probs=112.4

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+..+|..++..|+|++|+..|++++++......          ...+....++.++|.++..+|++++|+..++
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ  177 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            335677888999999999999999999999984421100          0136778899999999999999999999999


Q ss_pred             HHhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------------------------------
Q 018089          289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL---------------------------------  327 (361)
Q Consensus       289 ~al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l---------------------------------  327 (361)
                      +++.+        +|....+++.+|.++..+|++++|+..|++++++                                 
T Consensus       178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3nf1_A          178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG  257 (311)
T ss_dssp             HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence            99998        7778899999999999999999999999999985                                 


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          328 ----------------EPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       328 ----------------~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                                      +|.+..++..++.+....++.+++.+
T Consensus       258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  299 (311)
T 3nf1_A          258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET  299 (311)
T ss_dssp             CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence                            35566778888888888777766543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.14  E-value=3.5e-10  Score=101.69  Aligned_cols=133  Identities=17%  Similarity=0.118  Sum_probs=112.1

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|++++++......          ...+....++.++|.++..+|++++|+..+++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  136 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR  136 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC----------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            34667888999999999999999999999985431100          01367788999999999999999999999999


Q ss_pred             HhhcC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~~--------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++.+.        |....+++.+|.++..+|++++|+..|++++++        +|....++..++.+....++.+++.
T Consensus       137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  215 (311)
T 3nf1_A          137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE  215 (311)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99874        667889999999999999999999999999998        6667778888888888877766654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.5e-10  Score=110.30  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHH------HHHHHHHHHHHh---cCCHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS------QIFTNSSACKLK---LGDLKG  282 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~nla~~~~~---l~~~~~  282 (361)
                      ...+..+|..++..|++++|+..|+++++                  ..|...      .++.++|.++..   +|++++
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  433 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAIE------------------LENKLDGIYVGIAPLVGKATLLTRNPTVENFIE  433 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence            45566778888888888888888888887                  555543      389999999999   999999


Q ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       283 Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      |+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|+++.++..+..+...
T Consensus       434 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  495 (514)
T 2gw1_A          434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA  495 (514)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988877665543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.13  E-value=4.4e-11  Score=115.65  Aligned_cols=111  Identities=15%  Similarity=0.170  Sum_probs=101.6

Q ss_pred             HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc------
Q 018089          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------  297 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~------  297 (361)
                      ..++|++|+..|++++.                  ..+....++.++|.+++++++|++|+..|++||.++|.+      
T Consensus       246 ~l~~~~~A~~~~~~~~~------------------~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~  307 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTK------------------EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK  307 (457)
T ss_dssp             EEEEEECCCCGGGSCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred             hhhhcccCcchhhcCHH------------------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH
Confidence            44567777778877777                  888999999999999999999999999999999999998      


Q ss_pred             ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          298 ---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       298 ---------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                               ..+|+++|.||..+++|++|+.+|+++++++|++..++..++.+...+.+.+++.
T Consensus       308 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~  371 (457)
T 1kt0_A          308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK  371 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH
Confidence                     6999999999999999999999999999999999999999999999888777764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.13  E-value=3.8e-10  Score=111.56  Aligned_cols=140  Identities=16%  Similarity=0.159  Sum_probs=93.1

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc-----------cCCCCccc-----hhhHHHHHHHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KEGIDEGK-----SSSLRKTKSQIFTNSSACKL  275 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~nla~~~~  275 (361)
                      +..+..+|..+.+.|++++|++.|+++++..+....           ........     .....|.+..+|.+++.++.
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            556667777777777777777777777663221000           00000000     00133445567778888888


Q ss_pred             hcCCHHHHHHHHHHHhhc------CCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          276 KLGDLKGALLDTEFAMRD------GDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       276 ~l~~~~~Ai~~~~~al~~------~p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      +.|++++|+..+++++++      +|++ ..+|..+|.++...|++++|+..|+++++++|++..++..++.+....++.
T Consensus       487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  566 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP  566 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred             HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            888888888888888776      5554 677888888888888888888888888888888888888888877777666


Q ss_pred             HHH
Q 018089          349 REQ  351 (361)
Q Consensus       349 ~~~  351 (361)
                      +++
T Consensus       567 ~~A  569 (597)
T 2xpi_A          567 GLA  569 (597)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.11  E-value=2.4e-10  Score=97.09  Aligned_cols=113  Identities=13%  Similarity=0.020  Sum_probs=93.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch---
Q 018089          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---  298 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~---  298 (361)
                      ....++|+.|.+.|.....                  ..+.....+.++|.+++..|+|++|+..+++++.+.|.+.   
T Consensus        14 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   75 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDE------------------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD   75 (198)
T ss_dssp             --------CCCSGGGCCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC
T ss_pred             hhhhhhccccCchhhCCHH------------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc
Confidence            3344555555555555444                  6667788999999999999999999999999999999887   


Q ss_pred             -------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          299 -------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       299 -------------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                                   .+++++|.++..+|++++|+.+++++++++|.+..++..++.+...+++.+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~  142 (198)
T 2fbn_A           76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK  142 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH
Confidence                         899999999999999999999999999999999999999999998888777664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.10  E-value=3.1e-10  Score=102.66  Aligned_cols=107  Identities=10%  Similarity=0.077  Sum_probs=92.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|+++++++....           ...+....+++|+|.+|.++|+|++|+.++++|
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            456789999999999999999999999998654320           134567789999999999999999999999999


Q ss_pred             hhcCCCc------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhC
Q 018089          291 MRDGDDN------VKALFRQGQAYMALN-DVDAAVESFEKALKLE  328 (361)
Q Consensus       291 l~~~p~~------~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~  328 (361)
                      +.+.+..      +.+++++|.+|..+| ++++|+.+|++|+.+.
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9876543      789999999999999 5799999999999874

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.09  E-value=5e-10  Score=102.17  Aligned_cols=108  Identities=13%  Similarity=0.033  Sum_probs=89.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..+.. |+|++|+++|++|+++.+...            .......++.++|.+|.++|+|++|+.+++++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46777888999988 999999999999998553210            11234678999999999999999999999999


Q ss_pred             hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      +.+.|.+      ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus       182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            9886543      3588889999999999999999999999 999754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.09  E-value=6.2e-11  Score=89.75  Aligned_cols=90  Identities=16%  Similarity=0.188  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAV  340 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~  340 (361)
                      ...++.++|.++..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|.  +..++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHH-HHHHHHH
Q 018089          341 AKKKI-HERREQE  352 (361)
Q Consensus       341 ~~~~~-~~~~~~~  352 (361)
                      +...+ ++.+++.
T Consensus        85 ~~~~~~~~~~~A~   97 (112)
T 2kck_A           85 ALRYIEGKEVEAE   97 (112)
T ss_dssp             HHTTCSSCSHHHH
T ss_pred             HHHHHhCCHHHHH
Confidence            98887 6665553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.09  E-value=2.5e-10  Score=104.14  Aligned_cols=128  Identities=12%  Similarity=-0.032  Sum_probs=97.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...|+.+...|+|++|+.+|++|+++.....            .......++.++|.+|.. |++++|+.++++|
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A  141 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG------------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA  141 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            456777888888888899999999999888543210            122356789999999998 9999999999999


Q ss_pred             hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG------GIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.+.|..      ..++.++|.+|..+|+|++|+..|++++++.|.+.      .++..++.+...+++..++
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A  214 (307)
T 2ifu_A          142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA  214 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence            9887643      67899999999999999999999999999877543      2444444554444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.08  E-value=7.5e-10  Score=86.50  Aligned_cols=93  Identities=16%  Similarity=0.171  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      .+.....+.++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018089          340 VAKKKIHERREQE  352 (361)
Q Consensus       340 ~~~~~~~~~~~~~  352 (361)
                      .+...+++.+++.
T Consensus        92 ~~~~~~~~~~~A~  104 (133)
T 2lni_A           92 AALEAMKDYTKAM  104 (133)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHHhhHHHHH
Confidence            9988887766654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.08  E-value=1.1e-09  Score=108.69  Aligned_cols=119  Identities=6%  Similarity=-0.086  Sum_probs=112.1

Q ss_pred             HHhhHHHHHhccHHHHhhh----------HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC
Q 018089          209 MNAVDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG  278 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~  278 (361)
                      ++....|..+|..+.+.++          |++|++.|.++++                  .+|.+..+|.+++.+..+++
T Consensus        60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------------------~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCS
T ss_pred             chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcc
Confidence            4456788889999999888          9999999999999                  89999999999999999999


Q ss_pred             --CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          279 --DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       279 --~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                        +|++|++.|+++++++|.+..||+.++.++..++ .+++|+++++++++++|.|..+|..++.+...+
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence              7799999999999999999999999999999999 999999999999999999999999999998775

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.08  E-value=7.2e-10  Score=93.55  Aligned_cols=129  Identities=10%  Similarity=0.027  Sum_probs=105.0

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++++++....            ...+....++.++|.++..+|++++|+..++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   92 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS------------GDHTAEHRALHQVGMVERMAGNWDAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46778899999999999999999999999976533            135567889999999999999999999999999


Q ss_pred             hhc---CC----CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CH----HHHHHHHHHHHHHHHHHHH
Q 018089          291 MRD---GD----DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DG----GIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~---~p----~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~----~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.+   .+    ....+++++|.++..+|++++|+..+++++++.+.  +.    .++..++.+....++..++
T Consensus        93 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A           93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence            988   33    34678999999999999999999999999987432  22    2346667666666655554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.08  E-value=6.9e-10  Score=104.01  Aligned_cols=133  Identities=15%  Similarity=0.022  Sum_probs=107.9

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+..+|..++..|+++.|+.+|++|+++.+...           ...+....++.++|.+|..+|++++|+..++
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  206 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-----------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLE  206 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44677888899999999999999999999998664320           0134567889999999999999999999999


Q ss_pred             HHhhcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALK-----LEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~-----l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +|+.+.+      ....+++++|.+|..+|++++|+..|+++++     .+|....+...++.+...+++.+++.
T Consensus       207 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  281 (378)
T 3q15_A          207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF  281 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH
Confidence            9998643      2357889999999999999999999999999     77777788888888888777666653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=1.3e-09  Score=102.16  Aligned_cols=109  Identities=17%  Similarity=0.076  Sum_probs=96.8

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..+...|+|++|+++|++|+++.+..            ...+....++.|+|.+|..+|++++|+.++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI------------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            457778899999999999999999999999965432            12335677899999999999999999999999


Q ss_pred             Hhh-----cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          290 AMR-----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       290 al~-----~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      ++.     .+|....+++.+|.++..+|++++|+..+++++++.+.
T Consensus       248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999     88888999999999999999999999999999999653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.07  E-value=7e-10  Score=90.96  Aligned_cols=92  Identities=18%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD------------------GDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~------------------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~  323 (361)
                      ..+..+.++|..+++.|+|++|+..|++||.+                  +|.+..+|+++|.+|..+|+|++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35678899999999999999999999999999                  788889999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          324 ALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       324 a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +++++|.+..++..++.+...+++..++..
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  118 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEE  118 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence            999999999999999999999888777643

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.07  E-value=1.1e-09  Score=102.54  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=96.0

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+..+|..+...|+|++|+++|++|+++.+..            ...+....++.|+|.+|..+|++++|+.+++
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  248 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE------------KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK  248 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3456788899999999999999999999999966432            1244566789999999999999999999999


Q ss_pred             HHhh-----cC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          289 FAMR-----DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       289 ~al~-----~~-p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      +|+.     .+ |....+++++|.++..+|++++|+..+++++++.+
T Consensus       249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999     56 88899999999999999999999999999999854

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.07  E-value=1e-09  Score=81.87  Aligned_cols=69  Identities=22%  Similarity=0.354  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~k-a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      .+++|.+++.+|++++|+..+++++..+|++.. +++.+|.+|..+|++++|+..|+++++++|++..++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999999887

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.07  E-value=4.7e-10  Score=101.47  Aligned_cols=124  Identities=15%  Similarity=0.073  Sum_probs=100.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..++..++|++|+.+|++++.+....       .     .......++.++|.+|..+|++++|+.++++|+
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-------~-----~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  182 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-------I-----DVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-------S-----CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-------c-----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445568999999999999999999999843211       0     011345689999999999999999999999999


Q ss_pred             h-------cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH
Q 018089          292 R-------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~-------~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~  347 (361)
                      .       ..+....+++++|.+|..+|+|++|+.++++++++.+..      ..++..++.+...+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence            4       223346799999999999999999999999999987654      6788889988888774

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.06  E-value=5.5e-10  Score=90.95  Aligned_cols=99  Identities=16%  Similarity=0.158  Sum_probs=88.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus        46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           46 NAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            356678899999999999999999999999                  67777889999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHH--HHHHhcCCHHHHHHHHHHHHhh
Q 018089          291 MRDGDDNVKALFRQG--QAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       291 l~~~p~~~ka~~~~g--~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      +.++|.+..++..++  ..+..+|++++|+..+.++..+
T Consensus       108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999999998885554  4488899999999999987665

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.06  E-value=4.5e-10  Score=102.42  Aligned_cols=118  Identities=11%  Similarity=0.073  Sum_probs=74.5

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      +..+...|..+...|++++|...|+++++                  ..|.... +|.+++.++.++|++++|+..+++|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           99 MLLYFAYADYEESRMKYEKVHSIYNRLLA------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44567777788888888888888888887                  2233232 5666666666666666666666666


Q ss_pred             hhcCCCchhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYM-ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~-~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ++.+|.+..+|...+.... .+|++++|+..|+++++++|++..++..++.+...+++
T Consensus       161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  218 (308)
T 2ond_A          161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE  218 (308)
T ss_dssp             HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            6666666555554444422 25666666666666666666666666666555544433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.05  E-value=7.4e-10  Score=100.15  Aligned_cols=128  Identities=16%  Similarity=0.080  Sum_probs=98.9

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+...|..+...|+|++|+.+|++++.+.....            .......+++++|.+|..+|+|++|+.++++|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal  182 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34455677778888889999999998887443210            111246689999999999999999999999999


Q ss_pred             ---hcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH
Q 018089          292 ---RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       292 ---~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------~~~~~~~l~~~~~~~~~~~~~  351 (361)
                         ...|++    ..+++++|.+|..+|+|++|+.++++++++.+.      -..++..++.+...+++.+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence               445543    379999999999999999999999999988643      156778888888777666555

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.05  E-value=5.2e-10  Score=105.25  Aligned_cols=124  Identities=15%  Similarity=0.140  Sum_probs=107.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|++++++.+.              .......++.++|.+|..+|++++|+..+++
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--------------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH  111 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc--------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45778889999999999999999999999993211              1223456899999999999999999999999


Q ss_pred             Hhhc------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHH
Q 018089          290 AMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       290 al~~------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ++.+      +|....+++.+|.+|..+|++++|+..|++++++      .|....++..++.+....++
T Consensus       112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            9988      6778899999999999999999999999999999      55566788888888888777

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.05  E-value=1.9e-09  Score=82.01  Aligned_cols=90  Identities=20%  Similarity=0.161  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      .+..+.++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..++++++++|.+..++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 018089          343 KKIHERREQE  352 (361)
Q Consensus       343 ~~~~~~~~~~  352 (361)
                      ..+++..++.
T Consensus        83 ~~~~~~~~A~   92 (118)
T 1elw_A           83 EFLNRFEEAK   92 (118)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHHhhHHHHH
Confidence            8877766654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.04  E-value=1.2e-09  Score=88.26  Aligned_cols=105  Identities=13%  Similarity=0.191  Sum_probs=91.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-Cchh
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMRDG-D-DNVK  299 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Ai~~~~~al~~~-p-~~~k  299 (361)
                      ......+.+.|.+.+.                  .++.+..+.+++|.|+.+.+   +.++++..++.+++.+ | ++.+
T Consensus        11 ~~~l~~~~~~y~~e~~------------------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd   72 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD   72 (152)
T ss_dssp             HHHHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence            3455667777888776                  44566788999999999988   7779999999999998 7 6799


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       300 a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ++|++|.+|+.+++|++|.++++++++++|+|..+......++.++.+
T Consensus        73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888776643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.03  E-value=4.2e-09  Score=81.58  Aligned_cols=94  Identities=15%  Similarity=0.200  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      ..+.....+..+|.++...+++++|+..+++++..+|++..+++.+|.++..+|++++|+..++++++++|.+..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+...+++..++.
T Consensus        87 ~~~~~~~~~~~~A~  100 (131)
T 2vyi_A           87 GLALSSLNKHVEAV  100 (131)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHhCCHHHHH
Confidence            99988877766654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=3e-09  Score=94.69  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDT  287 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~~  287 (361)
                      +..+..+|..++..+++++|+.+|+++++                    +....+++++|.++..    .+++++|+.++
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~   65 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--------------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFY   65 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHH
Confidence            45566677777777777777777777755                    1122345555555555    55555555555


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          288 EFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      +++++++  ++.+++.+|.+|..    .+++++|+.+|+++++++  +..++..++.+...
T Consensus        66 ~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           66 AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            5555553  45555555555555    555555555555555542  44555555554443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.00  E-value=1.5e-09  Score=101.42  Aligned_cols=129  Identities=16%  Similarity=0.188  Sum_probs=107.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++++++.+..            ...+....++.++|.++..+|++++|+..++++
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  253 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  253 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            35567889999999999999999999999965432            023345668999999999999999999999999


Q ss_pred             hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.+.|..      ..+++.+|.++..+|++++|+..|++++++.+..      ..++..++.+...+++.+++
T Consensus       254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9887655      7899999999999999999999999999986644      55777778777777666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.00  E-value=3.4e-09  Score=82.74  Aligned_cols=87  Identities=20%  Similarity=0.156  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELA  339 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~---ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~  339 (361)
                      .++++|.+++..|+|++|+..+++++..+|++.   .+++.+|.++..+|++++|+..|+++++++|++   +.++..++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            468899999999999999999999999999988   899999999999999999999999999999999   88899999


Q ss_pred             HHHHHHHHHHHHH
Q 018089          340 VAKKKIHERREQE  352 (361)
Q Consensus       340 ~~~~~~~~~~~~~  352 (361)
                      .+...+++..++.
T Consensus        84 ~~~~~~g~~~~A~   96 (129)
T 2xev_A           84 LSQYGEGKNTEAQ   96 (129)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            9988877766654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.99  E-value=2.4e-10  Score=105.99  Aligned_cols=103  Identities=14%  Similarity=0.057  Sum_probs=58.6

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .+.++|..+++.|+|++|+.+|+++|+                  ++|.+..+|+++|.+|..+|++++|+.++++++++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLT------------------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            678899999999999999999999999                  78888999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089          294 GDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       294 ~p~~~ka~~~~g~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~  334 (361)
                      +|++..++..++.+ ....+..+++...|++++.+.|+++..
T Consensus       294 ~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             ------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            99999999999998 445667888999999999999987643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.2e-09  Score=84.59  Aligned_cols=94  Identities=17%  Similarity=0.096  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      ..+.....++.+|.+++..|+|++|+..+++++.++|++   ..+++++|.++..+|++++|+..|+++++++|.+..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            345567889999999999999999999999999999998   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018089          336 KELAVAKKKIHERREQE  352 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~~~  352 (361)
                      ..++.+...+++..++.
T Consensus       103 ~~~a~~~~~~~~~~~A~  119 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAV  119 (148)
T ss_dssp             HHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHH
Confidence            99999998888776654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.99  E-value=1.6e-09  Score=97.80  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=102.1

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+...|..++..|+|++|+..|+++++.-+.              .......++.++|.++..+|++++|+..+++++
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   70 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL   70 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc--------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456788999999999999999999999994211              122346789999999999999999999999999


Q ss_pred             hc------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHH
Q 018089          292 RD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG------GIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~~------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~~~~  347 (361)
                      .+      .|....+++.+|.++..+|++++|+..+++++++.|...      .++..++.+....++
T Consensus        71 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           71 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            87      455688999999999999999999999999999876542      367777777777666

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.99  E-value=1.8e-08  Score=91.00  Aligned_cols=132  Identities=14%  Similarity=0.032  Sum_probs=106.2

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ......+...+..++..|+|++|++.|.++++..+.            ..........+.++|.++..+|++++|+..++
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  139 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY------------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELK  139 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC------------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC------------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            345667788899999999999999999999984321            11334456667889999999999999999999


Q ss_pred             HHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKAL---KLEPNDG----GIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~---~l~p~~~----~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +|+.+.+..      ..+++.+|.+|..+|++++|+..|++++   +..|.+.    .++.+++.+...+++.+++.
T Consensus       140 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          140 KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence            999876543      5699999999999999999999999999   5566654    57778888877777666654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.97  E-value=5.8e-09  Score=94.98  Aligned_cols=105  Identities=13%  Similarity=0.100  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHhh-c
Q 018089          229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDL-------KGALLDTEFAMR-D  293 (361)
Q Consensus       229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~-------~~Ai~~~~~al~-~  293 (361)
                      +.|+..|++++.                  ..|.++.+|+++|..+..       +|++       ++|+..+++|++ +
T Consensus        33 ~~a~~~~~~al~------------------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~   94 (308)
T 2ond_A           33 KRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL   94 (308)
T ss_dssp             HHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHH------------------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh
Confidence            789999999999                  889999999999999874       5886       999999999999 7


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-IKKELAVAKKKIHERREQ  351 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~-~~~~l~~~~~~~~~~~~~  351 (361)
                      +|++..+|..+|.++..+|++++|...|+++++++|.+.. ++..++.+..+.++..++
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999999999999999999999999999886 899999888777766554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.97  E-value=5.9e-09  Score=99.69  Aligned_cols=125  Identities=12%  Similarity=0.075  Sum_probs=99.7

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      +....+....+.+......|+|++|+..|+++|++......          ..+|.....+.|+|.+|..+|+|++|+..
T Consensus       293 ~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg----------~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~  362 (433)
T 3qww_A          293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE----------DSNVYMLHMMYQAMGVCLYMQDWEGALKY  362 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBC----------TTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccC----------hhchHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            33334455555566666678999999999999996543311          24677889999999999999999999999


Q ss_pred             HHHHhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q 018089          287 TEFAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKELAVA  341 (361)
Q Consensus       287 ~~~al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~~  341 (361)
                      ++++|.+        +|+-...++++|.+|..+|+|++|+..|++|+++     -|+++.+......+
T Consensus       363 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          363 GQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            9999954        4455789999999999999999999999999986     57888776655544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.97  E-value=2.9e-09  Score=99.44  Aligned_cols=129  Identities=19%  Similarity=0.239  Sum_probs=108.3

Q ss_pred             hhHHHHHhccHHHHhhh--------------------HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQD--------------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS  270 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~--------------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl  270 (361)
                      .+..+..+|..++..|+                    |++|+..|.+++++....            ...+....++.++
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l  193 (406)
T 3sf4_A          126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL------------GDRAAQGRAFGNL  193 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------cCcHHHHHHHHHH
Confidence            35678899999999999                    999999999999865432            1256677899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCch------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 018089          271 SACKLKLGDLKGALLDTEFAMRDGDDNV------KALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKEL  338 (361)
Q Consensus       271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l  338 (361)
                      |.++..+|++++|+..+++++.+.+...      .+++.+|.++..+|++++|+..|++++++.|..      ..++..+
T Consensus       194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  273 (406)
T 3sf4_A          194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL  273 (406)
T ss_dssp             HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence            9999999999999999999998876554      399999999999999999999999999988765      5677777


Q ss_pred             HHHHHHHHHHHHH
Q 018089          339 AVAKKKIHERREQ  351 (361)
Q Consensus       339 ~~~~~~~~~~~~~  351 (361)
                      +.+....++..++
T Consensus       274 a~~~~~~g~~~~A  286 (406)
T 3sf4_A          274 GNTYTLLQDYEKA  286 (406)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHhCcHHHH
Confidence            7777766655554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.97  E-value=1.4e-09  Score=99.20  Aligned_cols=122  Identities=7%  Similarity=-0.082  Sum_probs=111.0

Q ss_pred             HHHhhHHHHHhccHH----HHh---hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089          208 WMNAVDSIKVFGNEH----YKK---QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~----~~~---g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      .++....+..++..+    ...   ++++++++.+.++++                  .+|.+..+|.+++.+..+++.+
T Consensus        99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~------------------~~pkny~aW~~R~~vl~~l~~~  160 (306)
T 3dra_A           99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS------------------SDPKNHHVWSYRKWLVDTFDLH  160 (306)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCT
T ss_pred             CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhccc
Confidence            344566777778888    555   789999999999999                  8999999999999999999999


Q ss_pred             H--HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          281 K--GALLDTEFAMRDGDDNVKALFRQGQAYMALND------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       281 ~--~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      +  ++++.++++|+.+|.|..||..++.++..+++      ++++++++++++.++|+|..+|..++.+....+.
T Consensus       161 ~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          161 NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            9  99999999999999999999999999999998      9999999999999999999999999998877654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.97  E-value=2.5e-09  Score=100.62  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=105.6

Q ss_pred             HHhhHHHHHhccHHHHhhh-----------------HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQD-----------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS  271 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~-----------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla  271 (361)
                      ...+..+..+|..+...|+                 |++|+++|++++++.+..            ...+....++.++|
T Consensus       163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la  230 (411)
T 4a1s_A          163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL------------GDRGAQGRACGNLG  230 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHH
Confidence            3456678889999999999                 999999999999865432            12355677899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCchh------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 018089          272 ACKLKLGDLKGALLDTEFAMRDGDDNVK------ALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELA  339 (361)
Q Consensus       272 ~~~~~l~~~~~Ai~~~~~al~~~p~~~k------a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~  339 (361)
                      .++..+|++++|+..+++++.+.+....      +++.+|.+|..+|++++|+..|++++++.|..      ..++..++
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  310 (411)
T 4a1s_A          231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG  310 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999988775544      89999999999999999999999999988754      45667777


Q ss_pred             HHHHHHHHHHHH
Q 018089          340 VAKKKIHERREQ  351 (361)
Q Consensus       340 ~~~~~~~~~~~~  351 (361)
                      .+....++..++
T Consensus       311 ~~~~~~g~~~~A  322 (411)
T 4a1s_A          311 NTYTLLHEFNTA  322 (411)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHH
Confidence            777666655554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.96  E-value=1.7e-10  Score=112.09  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=91.9

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..+++.|+|++|++.|++|++                  ++|....+++++|.+|..+|++++|+..+++
T Consensus        38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~   99 (477)
T 1wao_1           38 SNAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYET   99 (477)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3477888999999999999999999999999                  6777888999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCC
Q 018089          290 AMRDGDDNVKALFRQGQA--YMALNDVDAAVESFE-----------KALKLEPND  331 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~--~~~~~~~~~A~~~~~-----------~a~~l~p~~  331 (361)
                      |++++|++..++..++.+  +..+|++++|++.++           ++++++|..
T Consensus       100 al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          100 VVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999999999999  889999999999999           888888764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.96  E-value=4.5e-09  Score=84.43  Aligned_cols=108  Identities=20%  Similarity=0.150  Sum_probs=91.5

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++++++.+...            ..+....++.++|.++..+|++++|+..++++
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            346788899999999999999999999999664320            22345778999999999999999999999999


Q ss_pred             hhcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          291 MRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       291 l~~~p------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      +.+.+      ....+++.+|.++..+|++++|+..+++++++...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            97643      23678999999999999999999999999987643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.96  E-value=5.8e-09  Score=92.74  Aligned_cols=109  Identities=23%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             hHHHHHhccHHHH----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHH
Q 018089          212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGA  283 (361)
Q Consensus       212 a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A  283 (361)
                      +..+..+|..+..    .+++++|+.+|+++++                  ..  ...+++++|.+|..    .+++++|
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~------------------~~--~~~a~~~lg~~~~~g~~~~~~~~~A   97 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD------------------LN--YSNGCHLLGNLYYSGQGVSQNTNKA   97 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------------------TT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH------------------CC--CHHHHHHHHHHHhCCCCcccCHHHH
Confidence            4456667777777    7777777777777766                  21  34556666666666    6666666


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          284 LLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       284 i~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      +.++++++..+  ++.+++++|.+|..    .+++++|+.+|+++++++  +..+...++.+...
T Consensus        98 ~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           98 LQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            66666666653  55666666666666    666666666666666654  34455555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.95  E-value=5.9e-09  Score=79.98  Aligned_cols=90  Identities=28%  Similarity=0.340  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      ...++.++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|.+..++..++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHH
Q 018089          343 KKIHERREQE  352 (361)
Q Consensus       343 ~~~~~~~~~~  352 (361)
                      ...++.+++.
T Consensus        88 ~~~~~~~~A~   97 (125)
T 1na0_A           88 YKQGDYDEAI   97 (125)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHhcCHHHHH
Confidence            8777665553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.95  E-value=2e-09  Score=103.33  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=98.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDLKGALLDTE  288 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~~~Ai~~~~  288 (361)
                      .+..+.++|..++..|+|++|+.+|++++++.+.....          ..+....++.++|.+++++  ++|++|+.+|+
T Consensus        93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~  162 (472)
T 4g1t_A           93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP----------YRIESPELDCEEGWTRLKCGGNQNERAKVCFE  162 (472)
T ss_dssp             THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS----------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc----------cchhhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            35567889999999999999999999999965533211          1112345678888777665  47999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQAYMA---LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~~~~---~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      +|++++|+++.+++.+|.++..   .+++++|++.|+++++++|.+..++..++.....
T Consensus       163 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~  221 (472)
T 4g1t_A          163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK  221 (472)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence            9999999999999999988654   5677899999999999999999888887755433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.95  E-value=6.2e-09  Score=89.60  Aligned_cols=134  Identities=16%  Similarity=0.055  Sum_probs=98.8

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh--------hccccCCC--Cccc-----hhhHHHHHHHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--------ICWEKEGI--DEGK-----SSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~--------~~~~~~~~--~~~~-----~~~~~~~~~~~~~nla~~~  274 (361)
                      ..+..+..+|..++..+++++|+.+|+++++.-.        ........  +.+.     .....+..+.+++++|.+|
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y   95 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVL   95 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3466677778888888888888888887765311        00011100  0110     1123456678899999999


Q ss_pred             Hh----cCCHHHHHHHHHHHhhcCC--CchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          275 LK----LGDLKGALLDTEFAMRDGD--DNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       275 ~~----l~~~~~Ai~~~~~al~~~p--~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      ..    .+++++|+.++++|++..+  .++.+++++|.+|..    .+++++|+.+|++++++ |.++.+...|+.+...
T Consensus        96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            88    8899999999999999988  458999999999998    88999999999999998 6777788888887654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.94  E-value=1.8e-08  Score=92.60  Aligned_cols=117  Identities=6%  Similarity=-0.094  Sum_probs=106.6

Q ss_pred             hhHHHHHhccHHHHhhh----------HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC--
Q 018089          211 AVDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--  278 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--  278 (361)
                      ..+.+...+..+...+.          +.+++..+.+++.                  .+|.+..+|++++.+...++  
T Consensus        63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------------------~~PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHCSSC
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHhccCcc
Confidence            45667777777776655          7899999999998                  89999999999999999999  


Q ss_pred             CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       279 ~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~-~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      .+++++..|++++.++|.|..||..++.+...++. ++++++++.++++.+|.|..+|..+..+...+
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            49999999999999999999999999999999998 69999999999999999999999999988777

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.94  E-value=2.6e-09  Score=96.48  Aligned_cols=130  Identities=15%  Similarity=0.181  Sum_probs=107.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|++++|+..|++++++.+..            ...+....++.++|.++..+|++++|+..++++
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  249 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35567888999999999999999999999965432            023345668999999999999999999999999


Q ss_pred             hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.+.+..      ..+++.+|.++..+|++++|+..+++++++.+..      ..++..++.+....++.+++.
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            9887655      7899999999999999999999999999986643      346777888877777666653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.94  E-value=3.1e-09  Score=95.79  Aligned_cols=91  Identities=11%  Similarity=0.032  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      ....+.++|.+++.+|+|++|+..+++++.++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 018089          343 KKIHERREQEK  353 (361)
Q Consensus       343 ~~~~~~~~~~k  353 (361)
                      ..+++.+++.+
T Consensus        83 ~~~g~~~~A~~   93 (281)
T 2c2l_A           83 LEMESYDEAIA   93 (281)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            88887776643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.94  E-value=4e-09  Score=81.82  Aligned_cols=90  Identities=16%  Similarity=0.104  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-------GGIK  335 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-------~~~~  335 (361)
                      ....+.++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|++++++.|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            457789999999999999999999999999999999999999999999999999999999999999877       8888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018089          336 KELAVAKKKIHERREQE  352 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~~~  352 (361)
                      ..++.+...+++..++.
T Consensus        83 ~~la~~~~~~~~~~~A~   99 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAI   99 (131)
T ss_dssp             HHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhccHHHHH
Confidence            88888888777666653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.93  E-value=7.5e-09  Score=92.73  Aligned_cols=108  Identities=11%  Similarity=-0.016  Sum_probs=92.9

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..|..+++.++|++|+.++++++...                 ++ ....+++++|.++..+|++++|+.++++++.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-----------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-----------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC-----------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            67888999999999999999999876611                 22 2346899999999999999999999999996


Q ss_pred             cC--CC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          293 DG--DD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       293 ~~--p~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      ..  |. ...+++++|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus       200 g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          200 SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            55  65 6789999999999999999999999999999999 87777664

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.91  E-value=6.1e-09  Score=94.96  Aligned_cols=121  Identities=7%  Similarity=-0.154  Sum_probs=110.8

Q ss_pred             HHhhHHHHHhccHHHHhh--hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH----Hhc---CC
Q 018089          209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK----LKL---GD  279 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l---~~  279 (361)
                      ++....+..+|..+...+  ++++|+..+.++|.                  .+|.+..+|+.|+.+.    ..+   ++
T Consensus        64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~------------------~nPk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL------------------DNEKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------------------HCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH------------------HCcccHHHHHHHHHHHHHHHHhccccCC
Confidence            345677888899999888  99999999999999                  8899999999999999    777   89


Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD--AAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       280 ~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~--~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      +++++..|+++|..+|.+..+|+.++.++..++.++  ++++.++++++++|.|-.+|.....+...+..
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999998  99999999999999999999988887766543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.91  E-value=3.3e-09  Score=91.31  Aligned_cols=111  Identities=14%  Similarity=0.086  Sum_probs=89.9

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG----DLKGALLDTEFAMRD  293 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~----~~~~Ai~~~~~al~~  293 (361)
                      ....++..|..-.-...+.+|+.++...             ....++.+++++|.+|.. +    ++++|+.++++|+. 
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a-------------~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-   81 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKA-------------AAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-   81 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------HHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-
Confidence            3445566666665566788888877654             555677889999999988 7    89999999999965 


Q ss_pred             CCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKK  344 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~  344 (361)
                       +.++.+++++|.+|..    .+++++|+.+|+++++..|.  ++.+...|+.+...
T Consensus        82 -~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           82 -AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             -TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence             4689999999999988    88999999999999999873  47888888888766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.91  E-value=8.4e-09  Score=102.21  Aligned_cols=111  Identities=9%  Similarity=-0.015  Sum_probs=100.9

Q ss_pred             hccHHHHhhhH-HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC----------HHHHHHH
Q 018089          218 FGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLD  286 (361)
Q Consensus       218 ~G~~~~~~g~y-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~Ai~~  286 (361)
                      ......+.++| ++|++.|.++|.                  .+|....+|++++.+...+++          +++++..
T Consensus        34 ~~~~~~~~~~~~eeal~~~~~~l~------------------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~   95 (567)
T 1dce_A           34 AVFQKRQAGELDESVLELTSQILG------------------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGF   95 (567)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHH
Confidence            33344455555 578999999999                  899999999999999999998          9999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMALN--DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      +++++..+|.+..+|+.++.++..++  ++++|+++++++++++|.|-.+|...+.+...+.
T Consensus        96 ~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A           96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence            99999999999999999999999999  7799999999999999999999999999888776

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.89  E-value=1.4e-09  Score=88.75  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=67.5

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhH----------HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDY----------KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  274 (361)
                      .+..+..++.+.+.|..+...+++          ++|+..|++||+                  ++|....+|+|+|.+|
T Consensus        29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------------------ldP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHH
Confidence            334455688899999999998876          599999999999                  9999999999999999


Q ss_pred             HhcC-----------CHHHHHHHHHHHhhcCCCch
Q 018089          275 LKLG-----------DLKGALLDTEFAMRDGDDNV  298 (361)
Q Consensus       275 ~~l~-----------~~~~Ai~~~~~al~~~p~~~  298 (361)
                      ..+|           ++++|+.+|++||+++|++.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            9985           89999999999999999874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.88  E-value=2.4e-08  Score=95.54  Aligned_cols=124  Identities=10%  Similarity=0.046  Sum_probs=98.8

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +......-..+.++|+|++|++.|+++|+.....          ....+|.....+.|+|.+|..+|+|++|+..++++|
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~----------lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSER----------LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCC----------CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCc----------CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4445555666778999999999999999843222          112567788999999999999999999999999999


Q ss_pred             hc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHH
Q 018089          292 RD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       292 ~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~~~~~~  345 (361)
                      .+        +|+-...++++|.+|..+|++++|+..|++|+++     -|+++.+...+..+....
T Consensus       357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            54        3445789999999999999999999999999986     578887766655444433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.88  E-value=1.8e-08  Score=76.47  Aligned_cols=84  Identities=20%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 018089          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDG-------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~-------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  336 (361)
                      +.-++.+|..++++++|..|+.++++|+...       +....++..+|.++..+|+++.|+..++++++++|+++.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3457899999999999999999999999853       356789999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 018089          337 ELAVAKKKIHE  347 (361)
Q Consensus       337 ~l~~~~~~~~~  347 (361)
                      ++...+..+..
T Consensus        85 n~~~~~~~~~~   95 (104)
T 2v5f_A           85 NLKYFEYIMAK   95 (104)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            88877665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.87  E-value=3e-08  Score=91.65  Aligned_cols=113  Identities=11%  Similarity=-0.002  Sum_probs=102.4

Q ss_pred             ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCc
Q 018089          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~~~p~~  297 (361)
                      ...+.+....++|++.+.++|.                  ++|....+|+.++.+...++ .+++++..++++|..+|.+
T Consensus        61 r~~~~~~e~se~AL~lt~~~L~------------------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn  122 (349)
T 3q7a_A           61 RAIAAKEEKSERALELTEIIVR------------------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS  122 (349)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence            3334444556789999999999                  89999999999999999999 5999999999999999999


Q ss_pred             hhHHHHHHHHHHhc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          298 VKALFRQGQAYMAL-N-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       298 ~ka~~~~g~~~~~~-~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      ..+|+.|+.++..+ + +++++++.++++++++|.|-.+|...+.+...+....
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            99999999999998 8 9999999999999999999999999999888877655

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.85  E-value=4.3e-09  Score=81.36  Aligned_cols=76  Identities=8%  Similarity=0.030  Sum_probs=70.1

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.|+..+|++++|+..++
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~   85 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------------------QFPNHQALRVFYAMVLYNLGRYEQGVELLL   85 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44678899999999999999999999999999                  788889999999999999999999999999


Q ss_pred             HHhhcCCCchhHHH
Q 018089          289 FAMRDGDDNVKALF  302 (361)
Q Consensus       289 ~al~~~p~~~ka~~  302 (361)
                      +++..+|++.....
T Consensus        86 ~al~~~p~~~~~~~   99 (117)
T 3k9i_A           86 KIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHCCCHHHHH
T ss_pred             HHHHhCCCcHHHHH
Confidence            99999999877654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.84  E-value=1.4e-08  Score=84.34  Aligned_cols=121  Identities=7%  Similarity=-0.064  Sum_probs=95.5

Q ss_pred             hHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh--h-------c--cccCCCCc-----cchhhHHHHHHHHHHH
Q 018089          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--I-------C--WEKEGIDE-----GKSSSLRKTKSQIFTN  269 (361)
Q Consensus       206 ~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~--~-------~--~~~~~~~~-----~~~~~~~~~~~~~~~n  269 (361)
                      ...++.+..+..+|..+...|++++|+..|+++++.-+  .       .  ........     +.....+|.+..++++
T Consensus        34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~  113 (176)
T 2r5s_A           34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE  113 (176)
T ss_dssp             HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence            34455678889999999999999999999998876532  0       0  00000000     0012346778899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          270 SSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       270 la~~~~~l~~~~~Ai~~~~~al~~~p~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      +|.++..+|++++|+..++++++++|+.  ..+++.+|.++..+|++++|+..|++++.
T Consensus       114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999999999986  56999999999999999999999999874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.82  E-value=7.2e-09  Score=97.27  Aligned_cols=93  Identities=13%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+.++|..+++.|+|++|+++|+++++                  ++|....+++++|.+|..++++++|+.++++
T Consensus       271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~  332 (370)
T 1ihg_A          271 VALSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKK  332 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3467788899999999999999999999999                  6777889999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVES  320 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~  320 (361)
                      |++++|++..++..++.++..++++++|...
T Consensus       333 Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          333 AQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888753

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.82  E-value=3e-08  Score=91.08  Aligned_cols=116  Identities=10%  Similarity=-0.042  Sum_probs=104.6

Q ss_pred             HHhhHHHHHhccHHHHhh--hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC-HHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALL  285 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Ai~  285 (361)
                      ++....+...+..+...+  +|+++++.+.++++                  .+|.+..+|.+++.+...++. ++++++
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------------------~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE------------------ADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            345677788888888877  49999999999999                  899999999999999999998 699999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          286 DTEFAMRDGDDNVKALFRQGQAYMAL--------------NDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~g~~~~~~--------------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      +++++|..+|.|..||..++.++..+              +.++++++++.+++.++|+|..+|..+.-+.
T Consensus       167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          167 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999888              5689999999999999999999998665543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.82  E-value=2.2e-08  Score=84.25  Aligned_cols=109  Identities=16%  Similarity=0.084  Sum_probs=90.7

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..+...|+|++|+.+|++++++......           .......++.++|.++..+|++++|+..+++
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE-----------DPLAASANAYEVATVALHFGDLAGARQEYEK  132 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc-----------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            45777889999999999999999999999996542200           1125677899999999999999999999999


Q ss_pred             HhhcCCC------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          290 AMRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       290 al~~~p~------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      ++.+.+.      ...++..+|.++..+|++++|+..+++++++..
T Consensus       133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            9976432      145678999999999999999999999998854

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.77  E-value=1.8e-08  Score=93.02  Aligned_cols=120  Identities=6%  Similarity=-0.084  Sum_probs=110.2

Q ss_pred             HHhhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-C-CHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-G-DLKGALL  285 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~-~~~~Ai~  285 (361)
                      ++....+..++..+...+ .+++++..+.++|.                  .+|.+..+|+.|+.+...+ + ++++++.
T Consensus        85 P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~------------------~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           85 PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV------------------QNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            334677888899999888 59999999999999                  8889999999999999998 8 9999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHhcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVD--------AAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~~--------~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      .++++|..+|.|..||+.++.++..++.++        +++++++++++.+|.|-.+|.....+...+.
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999888        9999999999999999999999998876654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=2.8e-08  Score=88.99  Aligned_cols=119  Identities=13%  Similarity=-0.017  Sum_probs=101.3

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .....+..+...|+|++|.+.|..++.                  ..|... ..+.+|.++++.++|++|+..++.++..
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~------------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~  164 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPV------------------AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW  164 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCC------------------TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence            445678889999999999999999887                  566777 8999999999999999999999988886


Q ss_pred             CCC-c-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHHHHH
Q 018089          294 GDD-N-VKALFRQGQAYMALNDVDAAVESFEKALKLE--PN-DGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       294 ~p~-~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~--p~-~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .+. . ..+++.+|.++..+|++++|+.+|++++.-.  |. ...+...++.+...+.+..++
T Consensus       165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence            422 2 4699999999999999999999999998654  55 567888899998888876665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.75  E-value=4.4e-08  Score=74.33  Aligned_cols=83  Identities=23%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +.....+|..+++.++|..|+..|++|++..+.-.     .      .......++.++|.|+.++|++++|+..+++|+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----~------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----I------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----C------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----C------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            56678999999999999999999999998542110     0      012456789999999999999999999999999


Q ss_pred             hcCCCchhHHHHHH
Q 018089          292 RDGDDNVKALFRQG  305 (361)
Q Consensus       292 ~~~p~~~ka~~~~g  305 (361)
                      .++|++..++.+++
T Consensus        74 ~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           74 ELDPEHQRANGNLK   87 (104)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             hcCCCCHHHHhhHH
Confidence            99999999988887

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.75  E-value=5e-08  Score=72.49  Aligned_cols=73  Identities=12%  Similarity=0.001  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          261 KTKSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~---~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      |.++.++..+|.+++..++   .++|...+++||.++|+++++++.+|.+++..|+|++|+..++++++.+|.++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            3456788899999876655   799999999999999999999999999999999999999999999999998543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.74  E-value=9.8e-09  Score=77.19  Aligned_cols=69  Identities=10%  Similarity=0.068  Sum_probs=64.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ++|....+|.++|.+|..+|++++|+..++++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVE------------------TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467789999999999999999999999999                  78888889999999999999999999999999


Q ss_pred             hhcCCCc
Q 018089          291 MRDGDDN  297 (361)
Q Consensus       291 l~~~p~~  297 (361)
                      +++.|..
T Consensus        68 l~l~~~~   74 (100)
T 3ma5_A           68 IEVAREE   74 (100)
T ss_dssp             HHHHHHH
T ss_pred             HhhhhcC
Confidence            9987754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.72  E-value=1.8e-07  Score=86.84  Aligned_cols=129  Identities=12%  Similarity=-0.038  Sum_probs=97.2

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++++.+...            .......++.++|.++..+|++++|+..++++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  119 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------------VWHYALWSLIQQSEILFAQGFLQTAWETQEKA  119 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345677889999999999999999999998554320            11233566788999999999999999999999


Q ss_pred             hhcC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-----GGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~--------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-----~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.+.        |....++..+|.++..+|++++|...+++++.+.|..     ..++..++.+....++..++
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9764        3456678889999999999999999999999888752     23455666666555554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.70  E-value=3.1e-08  Score=89.39  Aligned_cols=117  Identities=9%  Similarity=-0.068  Sum_probs=91.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc-----------cccCCCCc-----cchhhHHHHHHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC-----------WEKEGIDE-----GKSSSLRKTKSQIFTNSSAC  273 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~~~nla~~  273 (361)
                      +.+..+..+|..+...|++++|+..|+++++.-+..           ........     +.....+|.+..+++++|.+
T Consensus       149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~  228 (287)
T 3qou_A          149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQ  228 (287)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHH
Confidence            346677788888888888888888887775532200           00000000     00123578888999999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          274 KLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       274 ~~~l~~~~~Ai~~~~~al~~~p~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      +..+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|+..|++++.
T Consensus       229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999999998  89999999999999999999999999875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.66  E-value=5e-08  Score=95.56  Aligned_cols=120  Identities=12%  Similarity=0.088  Sum_probs=84.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      .+..+...|..+.+.|++++|...|++++++                  .|.. ..+|.+++.++.++|++++|+..+++
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  381 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  381 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc------------------cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3556677788888899999999999999982                  2222 24677777777777777777777777


Q ss_pred             HhhcCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      |+...|.....+...+.+ +..+|++++|...|+++++.+|+++.++..+..+....++.
T Consensus       382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~  441 (530)
T 2ooe_A          382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  441 (530)
T ss_dssp             HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred             HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence            777777666666655544 33567777777777777777777777777766665544433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.65  E-value=2e-07  Score=74.42  Aligned_cols=98  Identities=17%  Similarity=0.073  Sum_probs=83.7

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhc
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRD  293 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~~~~al~~  293 (361)
                      +|..+...+.+++|+++|++|.+                  .  .++.+++++|.+|..    .+++++|+.++++|.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~------------------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACE------------------L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHc------------------C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence            78888888888889999999976                  2  456789999999998    89999999999999987


Q ss_pred             CCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                        .++.+++++|.+|..    .+++++|+.+|+++.++  .++.+...|+
T Consensus        91 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A           91 --NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence              579999999999999    89999999999999988  4555555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.64  E-value=3.9e-07  Score=70.83  Aligned_cols=106  Identities=12%  Similarity=0.147  Sum_probs=89.5

Q ss_pred             HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-Cch
Q 018089          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG---ALLDTEFAMRDG-D-DNV  298 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~---Ai~~~~~al~~~-p-~~~  298 (361)
                      .......+...|.+.+.                  ..+....+.+++|.|+.+-.+...   +|..++..++.+ | ..-
T Consensus        13 ~~~~l~~~~~~y~~e~~------------------~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~R   74 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHhc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence            44556667777877766                  444566788999999999887666   999999999987 5 578


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      +++|.+|.+++.+|+|++|..+++.+++.+|+|..+..+...++.++.+
T Consensus        75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988888776653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.62  E-value=6.7e-08  Score=93.82  Aligned_cols=117  Identities=10%  Similarity=-0.023  Sum_probs=95.7

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      +..+..+.++|..+..+|+|++|+.+|+++|++......          ...|.....++|+|.+|..+|+|++|+..++
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG----------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~  417 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH----------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMIC  417 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC----------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            346788899999999999999999999999996653322          1467888999999999999999999999999


Q ss_pred             HHhhc-----CCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          289 FAMRD-----GDD---NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       289 ~al~~-----~p~---~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      +|+++     .|+   -.+..-.++.++..++.|++|...|.++.+-.-.|..++
T Consensus       418 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~  472 (490)
T 3n71_A          418 KAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ  472 (490)
T ss_dssp             HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99954     344   467778899999999999999999999977654555554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.60  E-value=1.6e-07  Score=71.88  Aligned_cols=72  Identities=22%  Similarity=0.267  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++..++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999988877766653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.60  E-value=2.4e-07  Score=89.77  Aligned_cols=108  Identities=19%  Similarity=0.090  Sum_probs=84.5

Q ss_pred             HHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHH
Q 018089          214 SIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLD  286 (361)
Q Consensus       214 ~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~  286 (361)
                      .+..+|..++..|   ++++|+++|+++++                  .  .+..+++++|.+|..    .+++++|+.+
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~------------------~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  389 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAA------------------K--GEKAAQFNLGNALLQGKGVKKDEQQAAIW  389 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHH------------------C--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            3444555555422   56666666666654                  1  346789999999999    8999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPN---DGGIKKELAVAKK  343 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~~~~~  343 (361)
                      +++|++..  ++.+++++|.+|..    .+++++|+.+|+++++.+|+   ++.+...++.+..
T Consensus       390 ~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~  451 (490)
T 2xm6_A          390 MRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA  451 (490)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence            99999875  68999999999998    89999999999999999954   7788887777644

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.60  E-value=5.6e-07  Score=88.06  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhh-c
Q 018089          229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDLK-------GALLDTEFAMR-D  293 (361)
Q Consensus       229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~~-------~Ai~~~~~al~-~  293 (361)
                      ..|+..|++++.                  ..|....+|+++|..+..       +|+++       +|+..+++|+. +
T Consensus       255 ~~a~~~y~~al~------------------~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~  316 (530)
T 2ooe_A          255 KRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL  316 (530)
T ss_dssp             HHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence            578899999999                  888899999999999986       79987       99999999997 8


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~~~~~~  351 (361)
                      +|++..+|+.+|.++..+|++++|...|+++++++|.+. .++..++.+..+.+..+++
T Consensus       317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH
Confidence            999999999999999999999999999999999999986 5888888887776665554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.55  E-value=5.5e-07  Score=83.57  Aligned_cols=131  Identities=15%  Similarity=-0.008  Sum_probs=102.1

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      .-.+..+...|..++..|++++|+..+++++...+..             .......++.++|.++..+|++++|+..++
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   77 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG-------------WFYSRIVATSVLGEVLHCKGELTRSLALMQ   77 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-------------chhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3346677788999999999999999999999844211             122355678999999999999999999999


Q ss_pred             HHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHHHHHHHHH
Q 018089          289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP--------NDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p--------~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +++.+.|..      ..++..+|.++..+|++++|+..+++++++.+        ....+...++.+....++..++.
T Consensus        78 ~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (373)
T 1hz4_A           78 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  155 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999876543      34578899999999999999999999999863        23345566777766665555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.43  E-value=1.3e-06  Score=69.69  Aligned_cols=94  Identities=21%  Similarity=0.079  Sum_probs=82.3

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~  304 (361)
                      .+++++|+++|+++.+                  ..  +..+.  +|.+|...+.+++|+.++++|.+.  .++.+++++
T Consensus         8 ~~d~~~A~~~~~~aa~------------------~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L   63 (138)
T 1klx_A            8 KKDLKKAIQYYVKACE------------------LN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL   63 (138)
T ss_dssp             HHHHHHHHHHHHHHHH------------------TT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHc------------------CC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH
Confidence            5789999999999987                  22  22233  999999999999999999999998  589999999


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          305 GQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       305 g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      |.+|..    .+++++|+.+|+++.+.  .++.+...|+.+...
T Consensus        64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           64 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999999    89999999999999987  688999999988776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.39  E-value=1.6e-06  Score=83.32  Aligned_cols=109  Identities=14%  Similarity=0.006  Sum_probs=66.5

Q ss_pred             hHHHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc----CCHHHHH
Q 018089          212 VDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----GDLKGAL  284 (361)
Q Consensus       212 a~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~~~~~Ai  284 (361)
                      ...+..+|..+...|   ++++|+..|+++++                  ..+.....++++|.+|...    +++++|+
T Consensus       176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------------------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          176 DICYVELATVYQKKQQPEQQAELLKQMEAGVS------------------RGTVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            346778899999999   99999999999987                  3333444445555555443    4555555


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQA-Y--MALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~-~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      .+++++.   |.++.+++++|.+ +  ...+++++|+.+|+++.+.  +++.+...|+.+..
T Consensus       238 ~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          238 ALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            5555555   5555555555555 2  3445555555555555543  24555555554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.38  E-value=3.1e-06  Score=81.90  Aligned_cols=109  Identities=20%  Similarity=0.088  Sum_probs=69.3

Q ss_pred             hhHHHHHhccHHHH----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHH
Q 018089          211 AVDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKG  282 (361)
Q Consensus       211 ~a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~  282 (361)
                      .+..+..+|..+..    .+++++|+.+|+++++.                    ....+++++|.+|..    .+++++
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~Lg~~y~~g~g~~~~~~~  133 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--------------------GLPQAQQNLGVMYHEGNGVKVDKAE  133 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            45567777888877    78888888888887651                    234455666666666    566666


Q ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          283 ALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       283 Ai~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      |+.++++++..  .++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+...|+.+..
T Consensus       134 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  194 (490)
T 2xm6_A          134 SVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS  194 (490)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Confidence            66666666554  356666666666665    55666666666666654  35555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.34  E-value=2.4e-06  Score=76.04  Aligned_cols=90  Identities=16%  Similarity=0.176  Sum_probs=81.0

Q ss_pred             HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH--HHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhcCCC
Q 018089          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKL-----GDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l-----~~~~~Ai~~~~~al~~~p~  296 (361)
                      .-+....|....++|++                  ++|.  ...+|.-+|..|.+.     |+.++|.+++++||+++|+
T Consensus       175 Al~~l~~A~a~lerAle------------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~  236 (301)
T 3u64_A          175 LPDTVHAAVMMLERACD------------------LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA  236 (301)
T ss_dssp             CHHHHHHHHHHHHHHHH------------------HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhHHHHHHHHHHHHH------------------hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC
Confidence            34567889999999999                  7777  677999999999996     9999999999999999997


Q ss_pred             c-hhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCC
Q 018089          297 N-VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       297 ~-~ka~~~~g~~~~~-~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      . ..+++..|..+.. .+++++|.+.+++++..+|..
T Consensus       237 ~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          237 HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            5 9999999999988 499999999999999998874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.30  E-value=1.2e-05  Score=75.90  Aligned_cols=119  Identities=11%  Similarity=0.008  Sum_probs=68.6

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc---------------cCCCCccchhhH-------------HHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------------KEGIDEGKSSSL-------------RKT  262 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~---------------~~~~~~~~~~~~-------------~~~  262 (361)
                      ....+..+|..+++.|+|++|++.|.+++.+.+....               ......+.....             ...
T Consensus        54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  133 (434)
T 4b4t_Q           54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL  133 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence            4566889999999999999999999999886643210               000000000000             011


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      ...++.++|.+|..+|+|.+|+..+++++..      .+....++..+|.+|..+|+|++|...|++++.+.+
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            2345556666666666666666666655543      122245566666666666666666666666666543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.23  E-value=5.5e-06  Score=66.72  Aligned_cols=79  Identities=10%  Similarity=0.010  Sum_probs=68.1

Q ss_pred             hhHHHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHH-H-HHHHHHHHHHHHHHhcCCHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~Ai~  285 (361)
                      ..+..++.|..+.+.+   ++++++..++..++                  .+ | ....+++++|..|+++++|++|+.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~------------------~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3567788899999866   88899999999998                  55 5 568899999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHH
Q 018089          286 DTEFAMRDGDDNVKALFRQGQA  307 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~g~~  307 (361)
                      +++++|+++|+|..|..-+-.+
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999998887655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.22  E-value=8e-06  Score=78.43  Aligned_cols=107  Identities=15%  Similarity=0.021  Sum_probs=76.6

Q ss_pred             HhhHHHHHhccH-H--HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-----CHH
Q 018089          210 NAVDSIKVFGNE-H--YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK  281 (361)
Q Consensus       210 ~~a~~~~~~G~~-~--~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~  281 (361)
                      ..+..+..+|.. +  ...+++++|+.+|+++++                    .....+++++|.+|. .|     +++
T Consensus       246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--------------------ADQPRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHH-cCCCCCCCHH
Confidence            445667777877 3  467888999999988865                    225567788888776 44     788


Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          282 GALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      +|+.++++|+   +.++.+++++|.+|..    ..++++|+.+|+++.+.  .++.+...|+.+.
T Consensus       305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y  364 (452)
T 3e4b_A          305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF  364 (452)
T ss_dssp             HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred             HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence            8888888887   7778888888877776    34788888888877764  4455555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.20  E-value=5.4e-06  Score=78.21  Aligned_cols=138  Identities=9%  Similarity=-0.016  Sum_probs=90.4

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ....+.|..+.+.|+|++|++.|.++++..+........... .....+....++.++|.+|..+|+|++|++.+.+++.
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASV-DDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSB-CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHH-HHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345667888999999999999999999855433221111111 1123445567789999999999999999999999987


Q ss_pred             cCCCchh------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 018089          293 DGDDNVK------ALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       293 ~~p~~~k------a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.+...+      +...++.++...|++++|+..+++++.+.+..      ..+...|+.+....+++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS  154 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence            6544322      23345666666677777777777776654321      33555556655555554444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.19  E-value=8e-06  Score=86.66  Aligned_cols=108  Identities=21%  Similarity=0.239  Sum_probs=89.8

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+...|..++..|+|++|+.+|.+|-                          -|..+|.|+.++|++++|++.+.+|..
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA~--------------------------ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNVS--------------------------NFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhh--------------------------HHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            356679999999999999999999873                          478899999999999999999998855


Q ss_pred             cCC-------------------------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          293 DGD-------------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       293 ~~p-------------------------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      ..+                         .++..+..++..|..+|.|++|+..|++++.++|.+...+..|+.+..+.+
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence            443                         133455677788999999999999999999999999999988887766544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.13  E-value=8.7e-06  Score=77.19  Aligned_cols=115  Identities=18%  Similarity=0.152  Sum_probs=84.8

Q ss_pred             hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai  284 (361)
                      .......+..+..+|..+++.|+|++|++.|++|..                       +..|...+.+|..+|+|+.|.
T Consensus       141 A~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~-----------------------~~~Wk~v~~aCv~~~ef~lA~  197 (449)
T 1b89_A          141 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-----------------------TRTWKEVCFACVDGKEFRLAQ  197 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC-----------------------chhHHHHHHHHHHcCcHHHHH
Confidence            344455566666777777777777777777777632                       356667777777777777775


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      .+... |..+|++   +..+...|...|++++|+..|++++.+++.+..++..|+.+..+.+
T Consensus       198 ~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          198 MCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            55543 4455544   3457788999999999999999999999999999999988766544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.11  E-value=4.3e-05  Score=59.51  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~---~~~Ai~~~~~al~~~p~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .....+|.|.|+.+-.+   ..++|..++..++.+|. ....+|.+|.+++.+|+|++|..+.+.+++.+|+|..+..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34567888888888764   56799999999998884 588999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 018089          339 AVAKKKIHE  347 (361)
Q Consensus       339 ~~~~~~~~~  347 (361)
                      ..++.++.+
T Consensus       119 ~~Ie~ki~k  127 (134)
T 3o48_A          119 SMVEDKIQK  127 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888887764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.10  E-value=1.9e-05  Score=71.52  Aligned_cols=121  Identities=9%  Similarity=0.036  Sum_probs=92.9

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK--TKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      .+...|..+...|++++|++.+.++|.                  .++  ....++..++.+++++|+.+.|.+.+++..
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~------------------~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGID------------------NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHT------------------SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhc------------------cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            346789999999999999999999987                  443  678899999999999999999999999999


Q ss_pred             hcCCC----chhHHHHHHHH--HHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          292 RDGDD----NVKALFRQGQA--YMALN--DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       292 ~~~p~----~~ka~~~~g~~--~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +.+|+    +...+..++.+  ....|  ++++|...|+++....|+.......+. +...+++..++++
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~  232 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence            99984    33444555544  66556  999999999999888886333333333 5555555555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.08  E-value=5.8e-05  Score=59.52  Aligned_cols=84  Identities=13%  Similarity=0.067  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGD-DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~---~~~Ai~~~~~al~~~p-~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      .....+|.|.|+.+-.+   ..++|..++..++.+| ..-..+|.+|.+++.+|+|++|.++.+.+++.+|+|..+..+.
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            45667888888888764   5579999999999888 4678999999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 018089          339 AVAKKKIH  346 (361)
Q Consensus       339 ~~~~~~~~  346 (361)
                      ..++.++.
T Consensus       118 ~~Ie~~i~  125 (144)
T 1y8m_A          118 SMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877664

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.07  E-value=2.8e-05  Score=71.84  Aligned_cols=120  Identities=11%  Similarity=0.050  Sum_probs=83.8

Q ss_pred             hHHHHHhccHHHH---hhhHHHHHHHHHHHHHhhhhcc--------------ccCCCCccc------------hhhHHHH
Q 018089          212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICW--------------EKEGIDEGK------------SSSLRKT  262 (361)
Q Consensus       212 a~~~~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~--------------~~~~~~~~~------------~~~~~~~  262 (361)
                      |-.++-.|..++.   ..++.+|+.+|++|+++-|...              .........            .....|.
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            4445556666654   4567899999999998655210              000001000            0022344


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      .+.++.-+|.+++..|++++|+..+++|+.++| +.-+|..+|.++...|++++|++.|++|+.++|..+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            555666677777778999999999999999986 467888889999999999999999999999999765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.94  E-value=1.5e-05  Score=58.92  Aligned_cols=69  Identities=10%  Similarity=0.032  Sum_probs=61.9

Q ss_pred             hhHHHHHhccHHHHhhh---HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQD---YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~---y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~  287 (361)
                      .+..+...|..++-.++   ..+|...++++|+                  ++|.++.++..+|..+++.|+|++|+..+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------------------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w   66 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------------------LEPYNEAALSLIANDHFISFRFQEAIDTW   66 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------------------HCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35667778888875555   7999999999999                  99999999999999999999999999999


Q ss_pred             HHHhhcCCCc
Q 018089          288 EFAMRDGDDN  297 (361)
Q Consensus       288 ~~al~~~p~~  297 (361)
                      ++++..+|.+
T Consensus        67 ~~~l~~~p~~   76 (93)
T 3bee_A           67 VLLLDSNDPN   76 (93)
T ss_dssp             HHHHTCCCTT
T ss_pred             HHHHhhCCCC
Confidence            9999999984

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.93  E-value=1.7e-05  Score=75.57  Aligned_cols=93  Identities=9%  Similarity=0.064  Sum_probs=75.3

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      +..+..+.++|..+..+|+|++|+.+|+++|.+.......          ..|.....++|+|.+|..+|++++|+..++
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~  395 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLR  395 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----------CChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4467888999999999999999999999999976543222          467888999999999999999999999999


Q ss_pred             HHhhc-----CCCc---hhHHHHHHHHHHhc
Q 018089          289 FAMRD-----GDDN---VKALFRQGQAYMAL  311 (361)
Q Consensus       289 ~al~~-----~p~~---~ka~~~~g~~~~~~  311 (361)
                      +|+++     .|++   ..++.+++.+...+
T Consensus       396 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          396 LAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99954     4444   45666677666544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.91  E-value=7.5e-05  Score=79.40  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=83.9

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC----CCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE----GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      .+.|..+...|+|++|++.|+++-.........-    ...+...-........+|.++|.++..+|++++|+..|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            3469999999999999999988754332111100    00000000112355788999999999999999999999886 


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                          ++..+|++.|.++..+|+|++|+++|..|.+.+++
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence                88999999999999999999999999999998854

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.91  E-value=7.3e-05  Score=67.68  Aligned_cols=112  Identities=7%  Similarity=-0.048  Sum_probs=78.6

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH----HHHHHHHHHHH--HHhcC--CHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT----KSQIFTNSSAC--KLKLG--DLKGA  283 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~nla~~--~~~l~--~~~~A  283 (361)
                      .+.....+..+.+.|+.+.|.+.+++..+                  .+|.    .-.+..+++..  .+..|  ++++|
T Consensus       136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~------------------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A  197 (310)
T 3mv2_B          136 TELLLLAIEVALLNNNVSTASTIFDNYTN------------------AIEDTVSGDNEMILNLAESYIKFATNKETATSN  197 (310)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCccccccchHHHHHHHHHHHHHHhCCccHHHH
Confidence            34445567788899999999999998876                  4441    12333444433  55556  88889


Q ss_pred             HHHHHHHhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHH
Q 018089          284 LLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKL----------EPNDGGIKKELAVAKKK  344 (361)
Q Consensus       284 i~~~~~al~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l----------~p~~~~~~~~l~~~~~~  344 (361)
                      ...|+++....|+  ....+++   ++..+|++++|.+.++.++++          +|+|+.+..++..+...
T Consensus       198 ~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~  267 (310)
T 3mv2_B          198 FYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM  267 (310)
T ss_dssp             HHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence            8888888888776  3445555   788889999999888877776          47788887666444333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.88  E-value=7.3e-05  Score=66.52  Aligned_cols=139  Identities=14%  Similarity=0.025  Sum_probs=93.1

Q ss_pred             hHHHHhhHHHHHhccHHHHh--------------hhHHHHHHHHHHHHHhhhhccccCCCC-------------ccchhh
Q 018089          206 SWWMNAVDSIKVFGNEHYKK--------------QDYKMALRKYRKALRYLDICWEKEGID-------------EGKSSS  258 (361)
Q Consensus       206 ~~~~~~a~~~~~~G~~~~~~--------------g~y~~A~~~y~~al~~~~~~~~~~~~~-------------~~~~~~  258 (361)
                      ......+.-+-..|+.+...              .++..|...|.++.++.........+.             .+....
T Consensus        67 ~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~  146 (301)
T 3u64_A           67 GLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSR  146 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHH
Confidence            33344455555556655553              257788888888888775332211110             011122


Q ss_pred             HHHHHHHHHHHHHHHHHh---c--C------CHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHhc-----CCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLK---L--G------DLKGALLDTEFAMRDGDD--NVKALFRQGQAYMAL-----NDVDAAVES  320 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~---l--~------~~~~Ai~~~~~al~~~p~--~~ka~~~~g~~~~~~-----~~~~~A~~~  320 (361)
                      .++.++..++=.|.....   +  +      ....|....++||++||+  +..+|..+|..|...     |+.++|.+.
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            344555555555554432   2  2      367889999999999999  567999999999996     999999999


Q ss_pred             HHHHHhhCCCC-HHHHHHHHHHHHH
Q 018089          321 FEKALKLEPND-GGIKKELAVAKKK  344 (361)
Q Consensus       321 ~~~a~~l~p~~-~~~~~~l~~~~~~  344 (361)
                      |++|++++|+. ..+...++.-...
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHH
Confidence            99999999975 7777777775443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.88  E-value=0.00012  Score=59.46  Aligned_cols=119  Identities=9%  Similarity=0.028  Sum_probs=86.2

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+.+....++..+.|+.|+-.+..++.+....   +..      -.......++..+|.+++..++|.+|...|++||.
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~---~~~------~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN---PEL------FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---TTS------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC---ccc------ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            346777888999999999999999988854210   000      01123456889999999999999999999999983


Q ss_pred             cC------C-------------------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          293 DG------D-------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       293 ~~------p-------------------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      +.      +                   ...+..|++|.||..++++++|+..++..-.. -..+.+...|+++
T Consensus        92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL  164 (167)
T 3ffl_A           92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL  164 (167)
T ss_dssp             HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred             HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence            31      1                   11368899999999999999999988753211 1355566666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.82  E-value=3.3e-05  Score=73.69  Aligned_cols=75  Identities=9%  Similarity=0.001  Sum_probs=64.6

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      +..+..+.++|..+..+|+|++|+.+|+++|.+.......          ..|.....++|+|.+|..+|+|++|+..++
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~  406 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----------YSLNVASMWLKLGRLYMGLENKAAGEKALK  406 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----------CChHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            3467788899999999999999999999999976543221          467888999999999999999999999999


Q ss_pred             HHhhc
Q 018089          289 FAMRD  293 (361)
Q Consensus       289 ~al~~  293 (361)
                      +|+++
T Consensus       407 ~Al~i  411 (433)
T 3qww_A          407 KAIAI  411 (433)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99964

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.76  E-value=7.5e-05  Score=68.99  Aligned_cols=44  Identities=11%  Similarity=-0.124  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~  304 (361)
                      +++. ...|..+|.++...|++++|++.+++|++++|... .|+..
T Consensus       306 Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~  349 (372)
T 3ly7_A          306 LEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI  349 (372)
T ss_dssp             HCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred             cCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence            4443 45678899999999999999999999999999775 44443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.63  E-value=0.00012  Score=69.43  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=69.8

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .+...|..++..|+|++|+.+|.++                          .-|.++|.|+.++|+|++|++.+.+|   
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA---  174 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------------------SNFGRLASTLVHLGEYQAAVDGARKA---  174 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------------------hhHHHHHHHHHHhccHHHHHHHHHHc---
Confidence            7899999999999999999999976                          24899999999999999999999999   


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                        .+++.|.....++...|+++.|...... +..+|++   ...+..+.++.+..++
T Consensus       175 --~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          175 --NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEE  225 (449)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHH
T ss_pred             --CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHH
Confidence              4789999999999999999999877664 3345433   3344444444443333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.38  E-value=0.00068  Score=52.53  Aligned_cols=77  Identities=9%  Similarity=-0.043  Sum_probs=58.2

Q ss_pred             hHHHHHhccHHHHhhhHHH---HHHHHHHHHHhhhhccccCCCCccchhhHH-H-HHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKM---ALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~---A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      ....++.|..+.+..+-..   ++..++..++                  .. | ..-.+++.+|..++++|+|.+|+.+
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------------------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------------------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3445566666666554443   7777777665                  22 3 5678999999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~  306 (361)
                      ++.+|+.+|+|..|..-+..
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHH
Confidence            99999999999887655543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.30  E-value=0.0033  Score=58.91  Aligned_cols=115  Identities=14%  Similarity=0.043  Sum_probs=90.7

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC---CCC-ccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---GID-EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~  287 (361)
                      .+.+...|......++...|++.+.+|+.++.--.-..   ... ......+......+...++..++.+|++.+|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34455566666778899999999999999774211110   011 12224566677778888999999999999999999


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      ..++..+|.+..+|..+-.++...|+..+|++.|+++-+
T Consensus       195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988755

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.27  E-value=0.00088  Score=54.29  Aligned_cols=97  Identities=13%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCC-----C--ccchhhHHHHHHHHHHHHHHHHHhcCCHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI-----D--EGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (361)
                      .++.+...|+.+|.+++|..|...|++||.+-+........     +  ........+...++.+.+|.||.+++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            46778889999999999999999999999876643222110     0  0000000123457889999999999999999


Q ss_pred             HHHHHHHhhcCCCchhHHHHHHHHH
Q 018089          284 LLDTEFAMRDGDDNVKALFRQGQAY  308 (361)
Q Consensus       284 i~~~~~al~~~p~~~ka~~~~g~~~  308 (361)
                      +...+..-.. -...+...-+|..|
T Consensus       142 i~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             HHHHhcCCch-hcCHHHHHHHHHHh
Confidence            9987553222 24677777777655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.23  E-value=0.0024  Score=49.68  Aligned_cols=77  Identities=10%  Similarity=0.045  Sum_probs=57.6

Q ss_pred             HHHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          213 DSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       213 ~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      ...++.|..+.+..   +...++..++..++                  ..| ..-.+++.+|..+.++|+|.+|+.+++
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~------------------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d  102 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYVD  102 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH------------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33445555555433   44567777777666                  334 467899999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQA  307 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~~  307 (361)
                      .+|++.|+|..|..-+..+
T Consensus       103 ~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A          103 TLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhCCCCHHHHHHHHHH
Confidence            9999999998876655443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.99  E-value=0.0047  Score=48.63  Aligned_cols=76  Identities=11%  Similarity=0.045  Sum_probs=55.8

Q ss_pred             HHHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          213 DSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       213 ~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Ai~~~~  288 (361)
                      +..++.+..+.+..   +-.+++..++..++                  ..| ..-.+++.+|..++++|+|.+|+.+++
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~------------------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d  101 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYVD  101 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH------------------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34455555555533   34456666666665                  222 466789999999999999999999999


Q ss_pred             HHhhcCCCchhHHHHHHH
Q 018089          289 FAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~g~  306 (361)
                      .+|+.+|+|..|..-+..
T Consensus       102 ~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A          102 TLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHTCCCCHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHH
Confidence            999999999877655443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.91  E-value=0.016  Score=45.99  Aligned_cols=95  Identities=12%  Similarity=0.035  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 018089          229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAY  308 (361)
Q Consensus       229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~  308 (361)
                      +.-++.|++|+..++-.         . .......+.+|.+.|.. ..+++.++|.+.|+.++.++...++.|.-.|+--
T Consensus        36 ~rlrd~YerAia~~Pp~---------k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFE  104 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPD---------K-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFE  104 (161)
T ss_dssp             HHHHHHHHHHHHHSCGG---------G-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcc---------c-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            88889999999966432         1 22455677888888865 6779999999999999999888899999999988


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089          309 MALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       309 ~~~~~~~~A~~~~~~a~~l~p~~~~~  334 (361)
                      ..+|+...|...+.+|+.+.|...+.
T Consensus       105 iRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A          105 LSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHcccHHHHHHHHHHHhccCCCcHHH
Confidence            89999999999999999999976544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.84  E-value=0.0053  Score=61.77  Aligned_cols=103  Identities=9%  Similarity=-0.022  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhcCCCchhHHHHHHH
Q 018089          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL-LDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai-~~~~~al~~~p~~~ka~~~~g~  306 (361)
                      .+.....|++||.                  ..|....+|+..|..+...++.++|+ ..+++|+...|.+...|+..+.
T Consensus       325 ~~Rv~~~Ye~aL~------------------~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~  386 (679)
T 4e6h_A          325 KARMTYVYMQAAQ------------------HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSE  386 (679)
T ss_dssp             HHHHHHHHHHHHH------------------HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH------------------HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4556788999999                  66778899999999999999999997 9999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhC-----------CC-----------CHHHHHHHHHHHHHHHHH
Q 018089          307 AYMALNDVDAAVESFEKALKLE-----------PN-----------DGGIKKELAVAKKKIHER  348 (361)
Q Consensus       307 ~~~~~~~~~~A~~~~~~a~~l~-----------p~-----------~~~~~~~l~~~~~~~~~~  348 (361)
                      .....|++++|...|++++..-           |.           ...+|..+..+..+.+..
T Consensus       387 ~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l  450 (679)
T 4e6h_A          387 QYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL  450 (679)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999752           53           234666666666655543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.81  E-value=0.0041  Score=62.59  Aligned_cols=116  Identities=13%  Similarity=0.110  Sum_probs=89.8

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMR  292 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~  292 (361)
                      .+...++...+.+..+.|...|.+|+...                 .+....+|...|....+.+ +++.|...|+.+|+
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~-----------------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLK-----------------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----------------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            45555666667888999999999998731                 1122445666777766665 59999999999999


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHH
Q 018089          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAVAKKKIH  346 (361)
Q Consensus       293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~~~~~~~~  346 (361)
                      ..|++...|...+......|+.+.|...|++|+...|.   ...++......+...+
T Consensus       499 ~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G  555 (679)
T 4e6h_A          499 YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG  555 (679)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred             HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence            99999998888888888899999999999999999883   4566766666665544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.0065  Score=61.43  Aligned_cols=65  Identities=12%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      .+....++.--|..++..++|+-|+..+++|+...|.....|++++.+|..+|+|+.|+-.+..+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34445566666777888999999999999999999999999999999999999999999877766

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.80  E-value=0.056  Score=52.09  Aligned_cols=83  Identities=8%  Similarity=-0.100  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      ...++..+|.+......+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..+|..+-
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999999999999988777888888888876


Q ss_pred             HHH
Q 018089          343 KKI  345 (361)
Q Consensus       343 ~~~  345 (361)
                      ...
T Consensus       231 ~~~  233 (497)
T 1ya0_A          231 SKA  233 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.71  E-value=0.082  Score=46.26  Aligned_cols=69  Identities=19%  Similarity=0.051  Sum_probs=61.6

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~  341 (361)
                      -.++.+..++|++.+...++-+|.+++....+.+.++-.|+++.|...++.+.+++|+.......++.+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999877665554443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.41  E-value=0.091  Score=49.00  Aligned_cols=99  Identities=16%  Similarity=-0.011  Sum_probs=79.1

Q ss_pred             HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--
Q 018089          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG--  294 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~--  294 (361)
                      .+|..++..|+|.+|++.+.+.++.+....            .......++.....+|..++++.++...+.+|....  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d------------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLD------------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS------------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccc------------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            579999999999999999999998665320            135678889999999999999999999998887432  


Q ss_pred             --C-Cc--hhHHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q 018089          295 --D-DN--VKALFRQGQAYM-ALNDVDAAVESFEKALKL  327 (361)
Q Consensus       295 --p-~~--~ka~~~~g~~~~-~~~~~~~A~~~~~~a~~l  327 (361)
                        + ..  ......-|..++ ..++|..|..+|-.+++-
T Consensus       172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence              2 12  344555688888 899999999999888743

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.99  E-value=0.18  Score=48.59  Aligned_cols=133  Identities=10%  Similarity=-0.065  Sum_probs=89.7

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcccc------CCCCccchhh----------------HHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK------EGIDEGKSSS----------------LRKTKSQIFTN  269 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~------~~~~~~~~~~----------------~~~~~~~~~~n  269 (361)
                      ...|...+..+...|+.+.|...|++|+.. |.....      -....+....                .......+|..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            445666777888899999999999999986 532110      0000000000                01223466778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      .+....+.++.+.|...+++| ...+.....|...|..-...+ +.+.|...|+++++..|+++..+.........+.
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~  368 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG  368 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            888877888999999999999 443345566766676655555 6999999999999999998877665555444333

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.81  E-value=0.084  Score=49.96  Aligned_cols=101  Identities=13%  Similarity=-0.037  Sum_probs=79.0

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~  293 (361)
                      .+..+|..+++.|+++.|++.|.++......               ......++.+...+++..++|..+...+.+|-.+
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---------------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---------------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---------------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            4567899999999999999999998875432               1245678888999999999999999999998754


Q ss_pred             C---CCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          294 G---DDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       294 ~---p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      -   ++.   .+.....|.++...++|.+|...|-.++.-..
T Consensus       198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            2   221   23445567778889999999999988766543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.72  E-value=0.035  Score=56.14  Aligned_cols=60  Identities=20%  Similarity=0.281  Sum_probs=54.0

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .-+..++..+..+|+|+.|+++-++|+.                  +.|....+|..||.||.++|+|+.|+-..+.+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~------------------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTE------------------LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHh------------------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3466678888999999999999999999                  78888999999999999999999999877766

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.71  E-value=0.43  Score=38.68  Aligned_cols=95  Identities=14%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh--hcC-
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM--RDG-  294 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al--~~~-  294 (361)
                      ++-.++-.|.|..|+-+..+.                       ..+...+.-+.||.++++|..|+...+..|  ..+ 
T Consensus        39 ~~I~LyyngEY~R~Lf~L~~l-----------------------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~   95 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHLHKL-----------------------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVER   95 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTC-----------------------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBC
T ss_pred             hhhhhhhcchHhHHHHHHHhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            456667777777666554432                       234556777899999999999999999999  232 


Q ss_pred             --------------CCchhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          295 --------------DDNVKAL-FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       295 --------------p~~~ka~-~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                                    |.+-+-+ .-+|..+...|+-++|+..+......+|--+.+-
T Consensus        96 d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           96 DPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence                          3333333 3469999999999999999999999887555444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.66  E-value=0.15  Score=44.52  Aligned_cols=63  Identities=10%  Similarity=0.022  Sum_probs=57.2

Q ss_pred             cHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchh
Q 018089          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK  299 (361)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~k  299 (361)
                      ..+++.|+.++|++.....++                  .+|.+......+...+.-.|+|++|...++.+..++|....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR------------------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            467889999999999999999                  88888999999999999999999999999999999998754


Q ss_pred             H
Q 018089          300 A  300 (361)
Q Consensus       300 a  300 (361)
                      .
T Consensus        67 ~   67 (273)
T 1zbp_A           67 G   67 (273)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.14  E-value=0.25  Score=47.50  Aligned_cols=112  Identities=7%  Similarity=-0.059  Sum_probs=83.0

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAM  291 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al  291 (361)
                      ..+...+....+.++.+.|...|.+| .. +                 +....+|...|......+ +.+.|...++.++
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-----------------~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al  347 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-E-----------------GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL  347 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-----------------CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-----------------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            44555666666788899999999999 41 1                 011235555666666555 6999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ...|+.+..+...+.....+|+.+.|...|+++    +....++......+...+.
T Consensus       348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            988998888777788788899999999999997    3456677777766665543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.10  E-value=0.79  Score=44.15  Aligned_cols=107  Identities=11%  Similarity=0.059  Sum_probs=68.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCchhHHHH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-DDNVKALFR  303 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~-p~~~ka~~~  303 (361)
                      .+.++.|.+.|.+..+.                .+.| +...|+.+-.+|.+.|++++|+..+++..... .-+...|..
T Consensus        83 ~~~l~~A~~lf~~M~~~----------------G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVD----------------KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             CHHHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHh----------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence            35566777777765440                0112 34457777778888888888888888877643 225667777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHH
Q 018089          304 QGQAYMALNDVDAAVESFEKALKL--EPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       304 ~g~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +-.+|...|+.++|.+.|++..+.  .| |...+..|-.+..+.++.+
T Consensus       146 lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d  192 (501)
T 4g26_A          146 ALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNAD  192 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHH
Confidence            778888888888888888887664  34 3444444444444444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.52  E-value=0.74  Score=44.32  Aligned_cols=101  Identities=11%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~  292 (361)
                      ..+..+-..+.+.|++++|++.+++..+.                .+.| +...|+.+-..|.+.|++++|.+.+++..+
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----------------g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAF----------------GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            34555667888999999999999987651                0122 345677777888999999999999999887


Q ss_pred             cC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC
Q 018089          293 DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--EPN  330 (361)
Q Consensus       293 ~~-p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--~p~  330 (361)
                      .. .-+...|..+-.++...|+.++|.+.|++..+.  .|+
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            53 236678888999999999999999999998664  454

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.64  E-value=2.3  Score=39.40  Aligned_cols=87  Identities=15%  Similarity=0.065  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----------c------------hhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDD----------N------------VKALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~----------~------------~ka~~~~g~~~~~~~~~~~A~~~~~  322 (361)
                      .-....|......++.+.|+..+.+|+.+..-          .            ..+...++.++..+|++++|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33444444455678999999999999976421          1            2355667888899999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089          323 KALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       323 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +++..+|-+..++..|..+.....+..++
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~A  224 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDA  224 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999998888887766655544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.12  E-value=4.5  Score=37.53  Aligned_cols=137  Identities=13%  Similarity=0.101  Sum_probs=88.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh---------------hccccCCCCccchh-----hH---HH-----H
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD---------------ICWEKEGIDEGKSS-----SL---RK-----T  262 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~---------------~~~~~~~~~~~~~~-----~~---~~-----~  262 (361)
                      .-..+..+|..+.+.|++++-.+.......++.               ......+...+...     .+   ..     .
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446678899999999999998888765544442               11111111111110     00   01     1


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE---PNDGG  333 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~----~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~---p~~~~  333 (361)
                      ...+-..+|..|+..|+|.+|+..+.+.+.-    |..  -...+....+.|..++++..+.+.|.+|....   +.++.
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence            1123458899999999999999998888853    211  15677778889999999999999999997664   24555


Q ss_pred             HHHHHHHHHHHHHH
Q 018089          334 IKKELAVAKKKIHE  347 (361)
Q Consensus       334 ~~~~l~~~~~~~~~  347 (361)
                      +...+..+...+.-
T Consensus       178 i~a~i~~~~Gi~~l  191 (394)
T 3txn_A          178 VQGALDLQSGILHA  191 (394)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHH
Confidence            55555555444443

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.97  E-value=0.94  Score=31.98  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ..+.|..+...|...=+.|+|++|+.+|..|++++...
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~   44 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI   44 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            56678888899999999999999999999999987654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=90.55  E-value=0.6  Score=44.86  Aligned_cols=81  Identities=14%  Similarity=0.027  Sum_probs=70.0

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      -.-+..+|...--+..+..|..+|.+|+.                  +.|.....|+-+|.++...++.-+|+-+|.++|
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~------------------~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl  213 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQ------------------LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHH------------------hCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence            34556688888888899999999999999                  888888999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHh
Q 018089          292 RDGDDNVKALFRQGQAYMA  310 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~  310 (361)
                      ........|.-++...+..
T Consensus       214 ~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          214 AVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SSSBCCHHHHHHHHHHHHH
T ss_pred             hcCCCChhHHHHHHHHHHH
Confidence            8776677887777777654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.41  E-value=0.99  Score=31.86  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=34.7

Q ss_pred             hHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       206 ~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ...++.|..+...|..+=+.|+|++|+.+|.+|++++...
T Consensus        13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a   52 (83)
T 2w2u_A           13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL   52 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            3556788889999999999999999999999999987654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.30  E-value=2.3  Score=34.72  Aligned_cols=29  Identities=10%  Similarity=0.014  Sum_probs=18.7

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALR  240 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~  240 (361)
                      ...|+.+|.....+|+++-|.++|+++=.
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            34566667777777777777777766533

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=89.94  E-value=9.2  Score=34.14  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=69.1

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--CCH-----HHHHHHH
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL-----KGALLDT  287 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~-----~~Ai~~~  287 (361)
                      ....|-.++..|+|.+|+..|+..|..++-....   ++++..........+...+-.+-+++  ++.     +...+.+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~l  181 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD---NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRIC  181 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHH
Confidence            4678999999999999999999999877544222   22222333333333333333333333  221     2322233


Q ss_pred             HHHh-----hcCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          288 EFAM-----RDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       288 ~~al-----~~~p~~~ka~~~~g~-~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      +-|.     .+.|.+--.-.+.|+ ..++.++|..|...-++.+++.|.
T Consensus       182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            3332     445544444445554 467889999999999999999885

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.31  E-value=1.1  Score=45.03  Aligned_cols=26  Identities=15%  Similarity=-0.013  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      ..|.++|..+++.++++.|+.+|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            46777777777777777777777765

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=88.37  E-value=8.2  Score=34.51  Aligned_cols=116  Identities=10%  Similarity=0.007  Sum_probs=69.1

Q ss_pred             HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-------CCHHHHHHH
Q 018089          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-------GDLKGALLD  286 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-------~~~~~Ai~~  286 (361)
                      .....|-.++..|+|.+|++.|+..|..++-.....   +++..........+...+-.+-+++       .+..+.++.
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~---~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lEL  192 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDD---AEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLEL  192 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            345689999999999999999999999776543332   2222223333333332222222222       111222221


Q ss_pred             --HHHHhhcCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          287 --TEFAMRDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       287 --~~~al~~~p~~~ka~~~~g~-~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                        |=.-..+.|..--.-.+.|+ ..++.++|..|...-++.+++.|..+
T Consensus       193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  241 (325)
T 3mv2_A          193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP  241 (325)
T ss_dssp             HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence              11122445544444444444 46788999999999999999999644

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.21  E-value=6.9  Score=36.87  Aligned_cols=105  Identities=7%  Similarity=-0.053  Sum_probs=77.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+.-...++..+...|+|.+|.........-.  ....          .......++..-...|+..++|.+|...+.++
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et--~~~~----------~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki  203 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVET--YGSM----------EMSEKIQFILEQMELSILKGDYSQATVLSRKI  203 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CSSS----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--Hhcc----------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            35556778999999999999999998876411  1000          23456778888889999999999999999887


Q ss_pred             h----hcCC-Cc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089          291 M----RDGD-DN--VKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       291 l----~~~p-~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l  327 (361)
                      .    ...+ ..  ...+...|..+...++|.+|-.+|..+++.
T Consensus       204 ~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          204 LKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4    2222 22  344555688888999999999999888764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.15  E-value=1.4  Score=44.46  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=9.8

Q ss_pred             HHHhcCCHHHHHHHHHH
Q 018089          307 AYMALNDVDAAVESFEK  323 (361)
Q Consensus       307 ~~~~~~~~~~A~~~~~~  323 (361)
                      ++..+|++++|++.|.+
T Consensus       745 ~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          745 AYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            44556666666665544

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.16  E-value=10  Score=34.26  Aligned_cols=102  Identities=9%  Similarity=-0.010  Sum_probs=56.5

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHH-HHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh---------
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRK-YRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK---------  276 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~-y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---------  276 (361)
                      +..+.=+.++.+.+-+.++++|++|++. |.-|+.++...             ....-.++...+-.+|.+         
T Consensus        30 ~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~-------------Q~~sg~DL~~llvevy~~~~~~~~~~~   96 (336)
T 3lpz_A           30 EQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSG-------------QGGSGGDLAVLLVDTFRQAGQRVDGAS   96 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             cccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCC-------------CcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence            3355566677888889999999999987 55555544321             000111111112223322         


Q ss_pred             ----------cCC--------HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 018089          277 ----------LGD--------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF  321 (361)
Q Consensus       277 ----------l~~--------~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~  321 (361)
                                ...        ..+|+.+..+.=...--++..+..+|..|..-+++.+|...|
T Consensus        97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A           97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence                      221        223344433311112234677778888898888998888776

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=86.96  E-value=2.4  Score=32.04  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ..++.|..+...|...-..++|++|+.+|..|++++...
T Consensus        13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a   51 (117)
T 2cpt_A           13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV   51 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            356678888888989999999999999999999987654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=86.03  E-value=1.7  Score=34.41  Aligned_cols=91  Identities=10%  Similarity=-0.044  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCCc--------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDL------KGALLDTEFAMRDGDDN--------VKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~------~~Ai~~~~~al~~~p~~--------~ka~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      +.|.+.+.|.+.....-+.|+.      ++-++.|++|+..-|..        +..|.+.|.- ..+++.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4566677777777777777888      88899999999765532        4566666644 6779999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089          325 LKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       325 ~~l~p~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +.++..-+-++...++-+-+.....+
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~k  112 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKK  112 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHH
Confidence            98866565666666655554443333

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=83.77  E-value=2.8  Score=30.16  Aligned_cols=39  Identities=18%  Similarity=0.059  Sum_probs=33.1

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ..++.|..+...|..+-+.|+|++|+.+|..|++++...
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a   48 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV   48 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            345577888889999999999999999999999987654

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=83.59  E-value=1.3  Score=31.56  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ..|-.+-..+..+.+.|+|++||++.++|..++.++
T Consensus        13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA   48 (97)
T 2crb_A           13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   48 (97)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            357777788999999999999999999999876543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.41  E-value=5.2  Score=42.55  Aligned_cols=106  Identities=12%  Similarity=-0.014  Sum_probs=73.7

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH---------HHHHHHHHHHHHHHhcCCHHHHHH
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK---------TKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~nla~~~~~l~~~~~Ai~  285 (361)
                      .+-+|..++..|++++|.++|++|..-+...   ..... ......+         .....|......+.+.+.++.+++
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~---~~l~~-~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~  920 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSH---TSQFA-VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE  920 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTC---CCSCS-SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc---chhhh-hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3668999999999999999999985422110   00000 0000111         122457777888888999999999


Q ss_pred             HHHHHhhcCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          286 DTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       286 ~~~~al~~~p~~-----~ka~~~~g~~~~~~~~~~~A~~~~~~a  324 (361)
                      .+..||...+.+     ...|.++-..+..+++|++|...+-..
T Consensus       921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            999999865432     236888899999999999998777543

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=82.68  E-value=3.3  Score=29.17  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=32.0

Q ss_pred             HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      .++.|..+...|...-+.|+|++|+.+|..|++++...
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a   46 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA   46 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            45567788888888889999999999999999977544

>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}

Probab=82.47  E-value=5.9  Score=37.39  Aligned_cols=32  Identities=13%  Similarity=0.035  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHhhc-CCCchhHHHHHHHHHHhc
Q 018089          280 LKGALLDTEFAMRD-GDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       280 ~~~Ai~~~~~al~~-~p~~~ka~~~~g~~~~~~  311 (361)
                      |++|+.+++++-.. ++...+-+..++..|...
T Consensus       455 Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~a  487 (526)
T 2wb7_A          455 YKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMA  487 (526)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhc
Confidence            55566666655533 233445555555444333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.03  E-value=13  Score=30.07  Aligned_cols=48  Identities=19%  Similarity=0.162  Sum_probs=41.7

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018089          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL  325 (361)
Q Consensus       273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~  325 (361)
                      ..+++|+++.|.+.+++.     ++...|.++|......|+++-|..+|.++-
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            446899999999998765     678899999999999999999999998763

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=81.67  E-value=20  Score=29.12  Aligned_cols=82  Identities=20%  Similarity=0.176  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH--h---------------h
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL--K---------------L  327 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~--~---------------l  327 (361)
                      .....++.+..-.|+|.+|+-...     .-+..-+.|..+.||..+++|..|+..+++.+  +               +
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            445667778888999999876552     23467888999999999999999999999999  2               2


Q ss_pred             CCCCHHHHH-HHHHHHHHHHHHHHH
Q 018089          328 EPNDGGIKK-ELAVAKKKIHERREQ  351 (361)
Q Consensus       328 ~p~~~~~~~-~l~~~~~~~~~~~~~  351 (361)
                      +|.|++... .++.+.......+++
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~Ea  133 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEG  133 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHh
Confidence            466665443 444454444444443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.53  E-value=3.8  Score=39.34  Aligned_cols=70  Identities=14%  Similarity=0.056  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--Cc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD--DN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p--~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      ...+++.+-..|+..+.|+.|.....++.-...  .+   ..-+|..|.++...++|.+|.+.|..|++..|.+.
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            456777888899999999999999999963221  11   56677889999999999999999999999988654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.20  E-value=26  Score=31.22  Aligned_cols=26  Identities=15%  Similarity=-0.035  Sum_probs=20.9

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089          297 NVKALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       297 ~~ka~~~~g~~~~~~~~~~~A~~~~~  322 (361)
                      ++..+..+|..|..-+++.+|...|-
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            46778888888888899988888663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	3e-62
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	1e-61
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-58
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	1e-55
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	4e-55
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	1e-50
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	3e-50
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	1e-49
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	3e-49
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	4e-49
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	3e-48
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	7e-47
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	9e-47
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	5e-43
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	3e-42
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-39
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	1e-36
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	1e-30
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	2e-30
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	6e-30
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-28
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-26
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-25
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	7e-23
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-21
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	5e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-10
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-09
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	6e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-04

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  194 bits (494), Expect = 3e-62
 Identities = 101/171 (59%), Positives = 124/171 (72%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 3   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD + GDGTGGESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 63  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 122

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 123 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  193 bits (492), Expect = 1e-61
 Identities = 120/187 (64%), Positives = 142/187 (75%), Gaps = 3/187 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  
Sbjct: 12  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 71

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQF
Sbjct: 72  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 131

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D G
Sbjct: 132 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWG 190

Query: 181 ISNFFND 187
           I  F  D
Sbjct: 191 I--FPKD 195

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  185 bits (469), Expect = 2e-58
 Identities = 105/173 (60%), Positives = 134/173 (77%), Gaps = 2/173 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG + G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKS-GKPLHFKGSK 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + G+GTGGESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+ T +T  LDGKHVVFGRV++G+ VV+++E      +  P+ D  I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMIADCGQL 171

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  178 bits (451), Expect = 1e-55
 Identities = 99/171 (57%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK    + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM QGGDI+ G+G+GGESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E      +      V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  176 bits (446), Expect = 4e-55
 Identities = 99/168 (58%), Positives = 118/168 (70%), Gaps = 9/168 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
              F DI+      G I  ++++DV+PKTA NFRALCTGEKG G        Y G  FHR
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM+QGGD +AG+GTGG+SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFIT
Sbjct: 54  VIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFIT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T  TS LDGKHVVFG VI GM VV++IE   +G +  P + + I  CG
Sbjct: 114 TVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRSRIEIAKCG 160

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  165 bits (417), Expect = 1e-50
 Identities = 103/191 (53%), Positives = 125/191 (65%), Gaps = 16/191 (8%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + F D+ IG +  GRI++ ++ +V+PKT ENF AL TGEKG G        YKG  FHR
Sbjct: 8   DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHR 59

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD +A DGTGG SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT
Sbjct: 60  VIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 119

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
            T+ + LDGKHVVFG+V+ GM VV SIE   T  +D P+ D TI + G+I       +  
Sbjct: 120 LTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID------VKT 173

Query: 184 FFNDGDSYPDW 194
            F      PDW
Sbjct: 174 PF--VVEVPDW 182

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  163 bits (414), Expect = 3e-50
 Identities = 98/170 (57%), Positives = 121/170 (71%), Gaps = 3/170 (1%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FHR
Sbjct: 7   PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFHR 63

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD   GDGTG  SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFIT
Sbjct: 64  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 123

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 124 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (409), Expect = 1e-49
 Identities = 95/170 (55%), Positives = 116/170 (68%), Gaps = 9/170 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG          YKG  FHR
Sbjct: 3   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF--------GYKGSTFHR 54

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM Q GD +  +GTGG+SIYG +F DENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG VI+GM VV+ IE   +  +      + ITDCG++
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 163

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  161 bits (409), Expect = 3e-49
 Identities = 91/171 (53%), Positives = 109/171 (63%), Gaps = 8/171 (4%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            R + D+ IG +  GRI++ ++   +PKTA NF  L    KG G        Y G +FHR
Sbjct: 7   DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHR 58

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FMIQGGD + GDGTGG SIYG KF DENF+LKH   G LSMANAG +TNGSQFFIT
Sbjct: 59  VIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFIT 118

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           T +T  LDG+HVVFG++++GM VVR IE       D P  DV I   G I 
Sbjct: 119 TVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  160 bits (406), Expect = 4e-49
 Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 9/170 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + + DI+IG E  GR+++ ++ + +PKT ENF+ L +GE G G        YKG  FHR
Sbjct: 6   DKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHR 57

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI+ FMIQGGD +  DGTGG+SIYG +F+DEN ++KH   G +SMANAGPN+NGSQFF+T
Sbjct: 58  VIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFV-GAVSMANAGPNSNGSQFFVT 116

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T  T  LDG+HVVFG+V++GM VV+ +E+  TG ND P   V I DCG +
Sbjct: 117 TAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  159 bits (402), Expect = 3e-48
 Identities = 83/173 (47%), Positives = 117/173 (67%), Gaps = 6/173 (3%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE        +P+ YK   FHR
Sbjct: 17  PVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYK---VNNLPVGYKNTIFHR 73

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD    +G+G  SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFFIT
Sbjct: 74  VIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFIT 133

Query: 124 TTRTSHLDGKHVVFGRVIKG--MGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           T +   LDGK+VVFGR+I    + +++ IE+V        P   + + +CGE+
Sbjct: 134 TKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  155 bits (392), Expect = 7e-47
 Identities = 86/178 (48%), Positives = 107/178 (60%), Gaps = 16/178 (8%)

Query: 4   PRCFLDISIGVELE-----GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKG 58
            + F D+            GRI+  +++  +PKTA+NFR LC    G          Y+ 
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRE 53

Query: 59  VRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGS 118
             FHR+I  FMIQGGD + G+GTGG SIYG KF DENF  KH++KG+LSMANAGPNTNGS
Sbjct: 54  STFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGS 113

Query: 119 QFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           QFFITT  TS LDGKHVVFG V   K   VV+ IE + +   +        I +CGE+
Sbjct: 114 QFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (390), Expect = 9e-47
 Identities = 92/169 (54%), Positives = 114/169 (67%), Gaps = 9/169 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG          +KG  FHR
Sbjct: 2   PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF--------GFKGSSFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I  FM QGGD +  +GTGG+SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF+T
Sbjct: 54  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
             +T  LDGKHVVFG V +G+ V+R IE      +  P   V I DCGE
Sbjct: 114 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ-GSKDGKPKQKVIIADCGE 161

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 5e-43
 Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 18/166 (10%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G      I++E+Y    PKT +NF  L               +Y G +FHR
Sbjct: 12  PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHR 55

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQGGD + G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I 
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 3e-42
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 17/171 (9%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V L    G + +E++ D+ PKT ENF  LC              +Y G  FHR I+ F+I
Sbjct: 3   VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVI 51

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSH 129
           QGGD + G GTGGES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++
Sbjct: 52  QGGDPT-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAY 110

Query: 130 LDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGEIPEGADD 179
           LD KH +FGRV+ G  V+ ++E+V +    D P  ++ I       +  ++
Sbjct: 111 LDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEE 161

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  134 bits (339), Expect = 5e-39
 Identities = 64/159 (40%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTG----VPLHYKGVRFHRVIKGFMIQGG 73
           G I + ++ +  PKT  NF  L  G K               Y G  FHRVI+GFMIQGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 74  DISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGK 133
           D + G G GG        ++ + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ +
Sbjct: 73  DPT-GTGRGGPGYK--FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129

Query: 134 HVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           H +FG VI  +   VV +I    T  ND P   V I   
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 1e-36
 Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q GD   
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCA-----------SNYYNGCIFHRNIKGFMVQTGD-PT 57

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SI+G KFEDE +  LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 58  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FG+VI G+  +  +E +   +    P+ DV I D 
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  112 bits (280), Expect = 1e-30
 Identities = 70/154 (45%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++     KT +NF                  +Y    FHRVIK FM+Q GD  +
Sbjct: 11  GDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGD-PS 58

Query: 78  GDGTGGESIYGLKFEDENFELKHERKG-MLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE F+  +  K  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 59  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 118

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V +G  +V  IE V T   D P+ D+ I + 
Sbjct: 119 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  111 bits (279), Expect = 2e-30
 Identities = 74/155 (47%), Positives = 84/155 (54%), Gaps = 13/155 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G   VE+Y    PKT  NF  LC               Y    FHRVI  F+IQGGD   
Sbjct: 26  GDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGD-PT 73

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG+SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 74  GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 133

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           F RV K M  + +I  V T   + PI D+ I    
Sbjct: 134 FARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 6e-30
 Identities = 69/168 (41%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+   D +I     G I  +++    PKT ENF                  +Y G  FHR
Sbjct: 5   PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRN-----------GYYNGHTFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IKGFMIQ GD +     G     G   ++ +  L+H+R   LSMANAG NTNGSQFFIT
Sbjct: 54  IIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
              T  LD KH VFGRV KGM VV+ I +V      D P  DV+I + 
Sbjct: 114 VVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (264), Expect = 3e-28
 Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 2/169 (1%)

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
           GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY  +   
Sbjct: 3   GDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS 60

Query: 248 KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307
           +   ++   + L+        N  ACKLK+ D +GA+     A+     N KAL+R+ Q 
Sbjct: 61  RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG 120

Query: 308 YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
           +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y
Sbjct: 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 99.6 bits (247), Expect = 7e-26
 Identities = 50/182 (27%), Positives = 69/182 (37%), Gaps = 29/182 (15%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P   L  S G      I +E+     P + +NF                   Y    FH
Sbjct: 4   DPHVLLTTSAG-----NIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFH 47

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFF 121
           RVI GFMIQGG  +        +      ++E        +G ++MA  A  ++  SQFF
Sbjct: 48  RVIPGFMIQGGGFTEQMQQKKPNPP---IKNEADNGLRNTRGTIAMARTADKDSATSQFF 104

Query: 122 ITTTRTSHLD-----GKHVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGE 172
           I     + LD       + VFG+V+KGM V   I  V T D     + P   V I     
Sbjct: 105 INVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

Query: 173 IP 174
           +P
Sbjct: 165 LP 166

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 99.2 bits (246), Expect = 1e-25
 Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I+++ ++D  P+T +NF   C               Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR-----------EGFYNNTIFHRVINGFMIQ--GGGF 55

Query: 78  GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT--------TRTSH 129
             G   ++       + N  LK+ R  +       P++  +QFFI          +  S 
Sbjct: 56  EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115

Query: 130 LDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTITDC 170
               + VF  V+ GM  V  I+ V TG +    D P  DV I   
Sbjct: 116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 91.6 bits (226), Expect = 7e-23
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 9/162 (5%)

Query: 206 SWWMN------AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+          +K  G  ++K   Y  A+ +Y K + +      + G+ E +S + 
Sbjct: 3   SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSW---LEMEYGLSEKESKAS 59

Query: 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C LKL +   A+   + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 60  ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 119

Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            FEK L++ P +   + ++ + +KK  E  E++++ Y  MF+
Sbjct: 120 DFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 1e-21
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 9/162 (5%)

Query: 206 SWWMN------AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW MN          +K  G  ++K+  YK AL +Y+K + +      +      ++   
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKA 57

Query: 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           +  +     N + C LKL     A+     A+    +N K L R+G+A++A+ND + A  
Sbjct: 58  QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 117

Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            F+K L+L PN+   K +LAV +++I  +  +EKK Y  MF+
Sbjct: 118 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 75.0 bits (183), Expect = 5e-17
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +   IK  GNE +KK +   A+ KY++AL +     E +  D+      +  +     
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNL 71

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N + C  K  D   A+      ++   +NVKAL++ G A M    ++ A E+  KA  L 
Sbjct: 72  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131

Query: 329 PNDGGIKKELAVAKKKIHERRE 350
           PN+  I+    +   K+ E R+
Sbjct: 132 PNNLDIRNSYELCVNKLKEARK 153

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 16/143 (11%)

Query: 219 GNEHYKKQDYKMALRKYRKALR---------------YLDICWEKEGIDEGKSSSLRKTK 263
              +Y++    +A+  YR+A+                  +     E  D   ++      
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 264 SQIFTNSSA-CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322
                N+ A  K + G+++ A+     A+    +   A             +  A+  ++
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 323 KALKLEPNDGGIKKELAVAKKKI 345
           +A+++ P        +    K++
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 9e-08
 Identities = 18/164 (10%), Positives = 43/164 (26%), Gaps = 1/164 (0%)

Query: 191 YPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI-CWEKE 249
             +      ++                       +     A+        +         
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188

Query: 250 GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYM 309
                K+ +L       + N      +      A+     A+    ++          Y 
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248

Query: 310 ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353
               +D A++++ +A++L+P+       LA A K+     E E 
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 14/87 (16%), Positives = 25/87 (28%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
            + GD + A        R   DN   L      +     +D +      A+K  P     
Sbjct: 10  YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69

Query: 335 KKELAVAKKKIHERREQEKKQYRKMFQ 361
              L    K+  + +E  +     +  
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALRL 96

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 18/91 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  Y+  D++ A R   +  R                       + +    S+   +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR------------------QEPDNTGVLLLLSSIHFQCR 47

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYM 309
            L  +   +  A++      +A    G  Y 
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 193 DWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID 252
                 D     L       DS+    N   ++ + + A+R YRKAL             
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE------------ 333

Query: 253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN 312
                 +    +   +N ++   + G L+ AL+  + A+R       A    G     + 
Sbjct: 334 ------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

Query: 313 D 313
           D
Sbjct: 388 D 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
                       D +AA     +  + EP++ G+   L+    +   R ++       
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTL 58

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (146), Expect = 2e-11
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 23/154 (14%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                        +  +TN + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRAL 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND- 331
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 332 ----GGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
                 I   L +AKKK     E+ +        
Sbjct: 107 LNFGDDIPSALRIAKKKRWNSIEERRIHQESELH 140

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 9e-10
 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 26/140 (18%)

Query: 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275
           K  GN+ YKK+D+  AL+ Y KA                    L  T     TN +A   
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKA------------------KELDPTNMTYITNQAAVYF 49

Query: 276 KLGDLKGALLDTEFAMRDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLE 328
           + GD        E A+  G +N        KA  R G +Y        A+  + K+L   
Sbjct: 50  EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109

Query: 329 PNDGGIKKELAVAKKKIHER 348
                + K+   A+K + E+
Sbjct: 110 RTP-DVLKKCQQAEKILKEQ 128

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 2e-09
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS 271
           V+ +K  GN+     +   AL+ Y +A++                +     +        
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG-- 60

Query: 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
                              +    D  K   R+  A   LN  + A  ++E+ LK E N+
Sbjct: 61  ----------------CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 104

Query: 332 GGIKKELAVAKKK 344
             +K+ L   + +
Sbjct: 105 PQLKEGLQNMEAR 117

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 6e-08
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                           + N S 
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSL 52

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 53  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 112

Query: 333 GIKKELAVAKKKIHERREQE 352
             K +     K + ++  + 
Sbjct: 113 DAKMKYQECNKIVKQKAFER 132

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 13/126 (10%)

Query: 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279
           NE    +D     +K++                   S S +   +     +         
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAA-----------GSVSKSTQFEYAWCLVRT--RYNDDIR 53

Query: 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339
               LL+        ++    +F        L + + A++     L+ EP +   K+   
Sbjct: 54  KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113

Query: 340 VAKKKI 345
           +  K +
Sbjct: 114 LIDKAM 119

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 7e-07
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 2/124 (1%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +   ++   A + + +++                     K    I     A     G
Sbjct: 43  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +    +      ++      + L+     Y    +   A E    A  ++      K + 
Sbjct: 103 NQ--LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 160

Query: 339 AVAK 342
           A+  
Sbjct: 161 AMEC 164

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 21/116 (18%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G     K+D+K AL  +                            S+I  N       L 
Sbjct: 12  GVLAADKKDWKGALDAFSAVQ---------------------DPHSRICFNIGCMYTILK 50

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           ++  A      ++        A F++G  Y      D A++  ++AL     +  I
Sbjct: 51  NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 106

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 27/176 (15%)

Query: 184 FFNDGDSY---PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
            FN G  Y    +           ++   +   +    G  +Y+ + Y +A++  ++AL 
Sbjct: 39  CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 98

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299
            L      + ID        K  +  +  N +    K  + K A      A     +   
Sbjct: 99  QLR---GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-- 153

Query: 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
                       + +D A+E   K    EP        + +   ++    E++  Q
Sbjct: 154 ----------RHSKIDKAMECVWKQKLYEP--------VVIPVGRLFRPNERQVAQ 191

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 16/162 (9%), Positives = 40/162 (24%), Gaps = 8/162 (4%)

Query: 200 QTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEG----- 254
           +  +  S W      +     +       ++      K L  +   +  +  D+      
Sbjct: 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
           +    R         S      L     +  + +    +    +  +    +A   L   
Sbjct: 233 RWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 292

Query: 315 DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
              ++ F     ++P       +L     K        K +Y
Sbjct: 293 KETLQYFSTLKAVDPMRAAYLDDLR---SKFLLENSVLKMEY 331

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 17/144 (11%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   +Y  A    R+A+           +   ++       +      +     L 
Sbjct: 16  AQRQLVAGEYDEAAANCRRAMEI------SHTMPPEEAFDHAGFDAFCHAGLAEALAGLR 69

Query: 279 DLKGALLDTEFAMR-----------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
               AL   + A+            +G   + A++ +  A   L     A+  F+K +++
Sbjct: 70  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129

Query: 328 EPNDGGIKKELAVAKKKIHERREQ 351
                G         +   +R  Q
Sbjct: 130 IEERKGETPGKERMMEVAIDRIAQ 153

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 13/160 (8%), Positives = 35/160 (21%), Gaps = 27/160 (16%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
            +                   G    K+      ++    +  Y+               
Sbjct: 113 FNVDLPCRVKSSQ-------LGIISNKQTHTSAIVKPQSSSCSYIC-------------- 151

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                      +             A      A +    N +   +      +  D    
Sbjct: 152 ------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357
           +  + +++ ++         L  A  K  E R++ K ++ 
Sbjct: 206 IFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWG 245

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 21/175 (12%), Positives = 45/175 (25%), Gaps = 20/175 (11%)

Query: 191 YPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW---- 246
            P +   +                 K           +      +  A+R          
Sbjct: 117 TPAYAHLVTPAEEGAGGAGL--GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174

Query: 247 --------------EKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292
                         +K       + S+R     ++    A        + A+     A+ 
Sbjct: 175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234

Query: 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347
                +++ +  G + + L     AVE F +AL ++    G + E     + I  
Sbjct: 235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 289

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
           +    F +G   +   D+  AV  FE A++ +P      + L   + +  E+        
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQELLAISAL 76

Query: 357 RKMFQ 361
           R+  +
Sbjct: 77  RRCLE 81

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 19/156 (12%), Positives = 39/156 (25%), Gaps = 6/156 (3%)

Query: 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI 266
                 + +           +       Y +                    +        
Sbjct: 194 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253

Query: 267 FTNSSACKLKLGDLKGA------LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES 320
           + N +  ++ LG+ + A      L +   ++R   D  + L    Q Y        A   
Sbjct: 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313

Query: 321 FEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
              ALKL    G I   +   +    + R+  +   
Sbjct: 314 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 349

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +R+   + +    + Q  +   + D A    + AL+  P  
Sbjct: 4   DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 45

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
           Q +  ++   +  A+E   +A+K  P D  ++              E+  +Q  +  +
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIK 58

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
              D        +   +  F  G+ Y++L D+D+A   F+ A+    ++
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.83
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.78
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.68
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.65
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.6
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.58
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.52
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.47
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.47
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.43
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.33
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.3
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.26
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.25
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.02
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.99
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.96
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.93
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.83
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.79
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.65
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.58
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.55
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.5
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.41
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.2
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.17
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.13
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.92
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.77
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.68
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.59
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.06
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.56
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	87.84
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	87.76

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=4.7e-47  Score=317.57  Aligned_cols=171  Identities=61%  Similarity=1.104  Sum_probs=160.8

Q ss_pred             CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |++|+|||||+|+++++|+|+||||.+.||.||+||++||++..+.. ..++.++|+||.||||+++++||+|++..+++
T Consensus         1 ~~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~   79 (172)
T d2igva1           1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG   79 (172)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBC-TTSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhcccccc-ccCcccccCCcceeEEEecceEEcCCccCCCC
Confidence            89999999999999999999999999999999999999999876543 24677799999999999999999999998889


Q ss_pred             CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +++.++++.++++|+....|+.+|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||++|++|+..++.. ++
T Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~-g~  158 (172)
T d2igva1          80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GK  158 (172)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred             CCCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987654 89


Q ss_pred             cccceEecccccc
Q 018089          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~~  173 (361)
                      |..+|.|.+||++
T Consensus       159 P~~~i~I~~cG~l  171 (172)
T d2igva1         159 PVKDCMIADCGQL  171 (172)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             CCCCeEEEecccc
Confidence            9999999999987

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-45  Score=311.73  Aligned_cols=179  Identities=66%  Similarity=1.111  Sum_probs=166.4

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+++++|+|+||||.+.||+||+||++||+++.+.....++..+|+|+.||||++++++|+|+.....+++
T Consensus        14 np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~~~   93 (195)
T d1ihga2          14 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   93 (195)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCCCC
Confidence            89999999999999999999999999999999999999987666555566779999999999999999999998888888


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +...++.++.+++....|+.+|+|+|++.+|++++|||||++++.|+||++|+|||+|++||++|++|+.++++. +.|.
T Consensus        94 ~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~-~~P~  172 (195)
T d1ihga2          94 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA  172 (195)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred             CccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCC-CCcC
Confidence            888899999999999999999999999999999999999999999999999999999999999999999998864 8999


Q ss_pred             cceEeccccccCCCCCCCCC
Q 018089          163 ADVTITDCGEIPEGADDGIS  182 (361)
Q Consensus       163 ~~v~I~~~~~~~~~~~~~~~  182 (361)
                      .+|.|.+||++....++.+.
T Consensus       173 ~~i~I~~cG~l~~~~~~~~~  192 (195)
T d1ihga2         173 KLCVIAECGELKEGDDWGIF  192 (195)
T ss_dssp             SCEEEEEEEEECTTCCCCCS
T ss_pred             CCeEEEECcccCCCCcCCCC
Confidence            99999999999887666543

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-45  Score=302.03  Aligned_cols=161  Identities=57%  Similarity=0.973  Sum_probs=150.7

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+++++|+|+|+||.+.||+||+||++||...++        .+|+|+.||||+|+|+||+|++....+++
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~--------~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~   72 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG--------FGFKGSSFHRIIPQFMCQGGDFTNHNGTG   72 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccc--------cccCCcEEEEEEEeeeEEeeeccCCCCCC
Confidence            7999999999999999999999999999999999999986532        28999999999999999999999888888


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +.+.++..+.++.+..+|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||++|++|+...+. ++.|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~-~~~P~  151 (161)
T d2r99a1          73 GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPK  151 (161)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCS
T ss_pred             CccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCC-CCcCC
Confidence            88899988889999999999999999999999999999999999999999999999999999999999987654 58999


Q ss_pred             cceEeccccc
Q 018089          163 ADVTITDCGE  172 (361)
Q Consensus       163 ~~v~I~~~~~  172 (361)
                      .+|.|.+||.
T Consensus       152 ~~i~I~~CGe  161 (161)
T d2r99a1         152 QKVIIADCGE  161 (161)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCEEEEeCCC
Confidence            9999999974

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-45  Score=302.87  Aligned_cols=163  Identities=58%  Similarity=0.971  Sum_probs=153.8

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|||||+|+++++|+|+||||++.||.||+||++||+++++        .+|+||.||||+++++||+|++....++
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~--------~~Y~g~~f~rv~~~~~iq~g~~~~~~~~   72 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG--------FGYKGSTFHRVIPSFMCQAGDFTNHNGT   72 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCC--------cccCCcEEEEecccceEecCCccCCCCC
Confidence            48999999999999999999999999999999999999987543        2799999999999999999999888888


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++.+.++..++++.+.+.|+.+|+|||++.+|++++|||||++.+.|+||++|+|||+|++||++|++|+++++.. ++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~-~~P  151 (164)
T d2z6wa1          73 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKS-GRT  151 (164)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTT-SCC
T ss_pred             CCccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCC-CCC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999998875 789


Q ss_pred             ccceEecccccc
Q 018089          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~~  173 (361)
                      ..+|.|.+|+++
T Consensus       152 ~~~i~I~~cG~l  163 (164)
T d2z6wa1         152 SKKIVITDCGQL  163 (164)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeCeec
Confidence            999999999987

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=6.4e-45  Score=305.60  Aligned_cols=172  Identities=59%  Similarity=1.007  Sum_probs=162.7

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .+++|||||+|+++++|+|+||||++.||+||+||+.||++..+.+...++.++|+|+.||||+++++||+|+...+.++
T Consensus         2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            47899999999999999999999999999999999999999877766667778999999999999999999999888888


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++.+.++..+.++....+|+++|+++|++.+|++++|||||++++.|+||++|+|||+|++||+++++|+.++++.++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            88888888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEecccccc
Q 018089          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~~  173 (361)
                      ..+|.|.+|+.+
T Consensus       162 ~~~i~I~~cGel  173 (174)
T d1a33a_         162 LADVVILNCGEL  173 (174)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeeEEE
Confidence            999999999876

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=5.4e-45  Score=304.57  Aligned_cols=169  Identities=59%  Similarity=0.965  Sum_probs=156.5

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .+++|||||+|+++++|+|+||||++.||+||+||++||++.+...  .++.++|+|+.||||+++++||+|+...++++
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~--~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~   79 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGS--RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECT--TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccc--cCccCccCcccceEEEeCceEEecCccCCCCC
Confidence            4899999999999999999999999999999999999998754321  24556999999999999999999999988888


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++...++..++++.+.+.|+.+|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||+|++|++.+++. +.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~-g~P  158 (170)
T d1qnga_          80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CCC
T ss_pred             CCcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCC-cCC
Confidence            8888999999999999999999999999999999999999999999999999999999999999999999988765 789


Q ss_pred             ccceEecccccc
Q 018089          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~~  173 (361)
                      ..+|+|.+|+.+
T Consensus       159 ~~~i~I~~CG~l  170 (170)
T d1qnga_         159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             ccCEEEEeeEcC
Confidence            999999999874

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=4.6e-44  Score=296.18  Aligned_cols=161  Identities=61%  Similarity=1.013  Sum_probs=150.3

Q ss_pred             CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC
Q 018089            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      ..|||||+|+|+++|+|+||||++.||+||+||++||+++.+.        +|+|+.||||+|+++||+|++..+++.++
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   73 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF--------GYAGSHFHRVIPDFMLQGGDFTAGNGTGG   73 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC--------ccCCCEEEEEEecceEecCCCCCCCCCCC
Confidence            3689999999999999999999999999999999999987432        59999999999999999999998888888


Q ss_pred             CccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCccc
Q 018089           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (361)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~  163 (361)
                      .+.++..+.+|++.++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|++++++|+...+. +++|..
T Consensus        74 ~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~-~~~P~~  152 (162)
T d2cfea1          74 KSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRS  152 (162)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSS
T ss_pred             cccCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCC-CCCCCC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999887654 589999


Q ss_pred             ceEecccccc
Q 018089          164 DVTITDCGEI  173 (361)
Q Consensus       164 ~v~I~~~~~~  173 (361)
                      +|.|.+|++.
T Consensus       153 ~i~I~~cgv~  162 (162)
T d2cfea1         153 RIEIAKCGVC  162 (162)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEeeEcC
Confidence            9999999874

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=5.3e-44  Score=299.69  Aligned_cols=169  Identities=58%  Similarity=0.988  Sum_probs=153.1

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||.|||||+|+++++|+|+|+||.+.||+||+||++||+.+-..   .++...|+++.||||++++++|+|+...+.+.
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~---~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~   81 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   81 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccc---cCCCCCcCCcccceeccceeeccCCcccCCcc
Confidence            489999999999999999999999999999999999999975100   11122399999999999999999999877777


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      .....++.++.++.+...|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||++|++|++++++.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  161 (173)
T d1qoia_          82 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  161 (173)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             eeecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcC
Confidence            77777788888888888999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEecccccc
Q 018089          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~~  173 (361)
                      ..+|.|.+||.+
T Consensus       162 ~~~i~I~~cGel  173 (173)
T d1qoia_         162 KLPVVISQCGEM  173 (173)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEcccCC
Confidence            999999999864

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=4.1e-44  Score=302.38  Aligned_cols=165  Identities=55%  Similarity=0.897  Sum_probs=156.0

Q ss_pred             CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC
Q 018089            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      .+|||||+|+++++|+|+||||.+.||+||+||++||+++++        .+|+|+.||||+++|+||||++..++++++
T Consensus         7 ~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~--------~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~   78 (182)
T d1h0pa_           7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKG--------EGYPGSKFHRVIADFMIQGGDFTRGDGTGG   78 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhccc--------CCcCCceEEEEEecceEEcCCCCCCCCCCC
Confidence            379999999999999999999999999999999999986532        389999999999999999999998899999


Q ss_pred             CccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCccc
Q 018089           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (361)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~  163 (361)
                      .+.++..+.++++...|+.+|+++|++.++++++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~  158 (182)
T d1h0pa_          79 RSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQ  158 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESS
T ss_pred             CCCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             ceEeccccccCCC
Q 018089          164 DVTITDCGEIPEG  176 (361)
Q Consensus       164 ~v~I~~~~~~~~~  176 (361)
                      +|.|.+|+.+...
T Consensus       159 ~v~I~~cG~l~~~  171 (182)
T d1h0pa_         159 DVIIAASGHIAVD  171 (182)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEECCeEeCC
Confidence            9999999988643

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=2.2e-43  Score=297.72  Aligned_cols=163  Identities=60%  Similarity=0.968  Sum_probs=154.9

Q ss_pred             CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC
Q 018089            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      .+|||||+|+++++|+|+||||++.||+||+||++||++++.        .+|+|+.||||++++++|+|++...+++++
T Consensus         8 ~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~--------~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   79 (182)
T d2rmca_           8 DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKG--------YGYKGSIFHRVIKDFMIQGGDFTARDGTGG   79 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCCSSSSSSCC
T ss_pred             CeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCC--------ccccCceeeeeecCceEEcCCCCCCCCCCC
Confidence            479999999999999999999999999999999999987532        379999999999999999999988888899


Q ss_pred             CccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCccc
Q 018089           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (361)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~  163 (361)
                      .++++..++++++.+.|+++|+|+|++.++++++|||||++.+.++||++|+|||+|++||+++++|+.++++.++.|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~  159 (182)
T d2rmca_          80 MSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLT  159 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred             CCCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEeccccccC
Q 018089          164 DVTITDCGEIP  174 (361)
Q Consensus       164 ~v~I~~~~~~~  174 (361)
                      +|+|.+|+++.
T Consensus       160 ~v~I~~~g~l~  170 (182)
T d2rmca_         160 DCTIVNSGKID  170 (182)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CeEEEEeeEEe
Confidence            99999999985

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=3e-43  Score=297.90  Aligned_cols=168  Identities=49%  Similarity=0.930  Sum_probs=155.4

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+++++|+|+||||.+.||+||+||++||+++.+.   .++...|+|+.||||++++++|||++....+.+
T Consensus        16 np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~---~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~   92 (186)
T d1z81a1          16 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG   92 (186)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBS---SSSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhccccc---CCcccccCCCeeeeeecceeeecCCccccCCcc
Confidence            89999999999999999999999999999999999999987432   133446999999999999999999998888888


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecC--hHHHHHHhccCCCC-CC
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKG--MGVVRSIEHVMTGD-ND  159 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g--~~vl~~i~~~~~~~-~~  159 (361)
                      ...++|..++++...++|+++|+++|++.+|++++|||||++++.|+||++|+|||+|++|  |+++++|+.++++. .+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~  172 (186)
T d1z81a1          93 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY  172 (186)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred             cccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCC
Confidence            8889999999999999999999999999999999999999999999999999999999998  99999999998875 57


Q ss_pred             CcccceEecccccc
Q 018089          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~~  173 (361)
                      .|..+|.|.+||.+
T Consensus       173 ~P~~~i~I~~CGel  186 (186)
T d1z81a1         173 KPKIPINVVECGEL  186 (186)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             ccCCCEEEEeCCcC
Confidence            89999999999864

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=5.2e-43  Score=291.35  Aligned_cols=162  Identities=54%  Similarity=0.950  Sum_probs=148.7

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      .++|||||+|+++++|+|+||||.+.||.||+||++||+++.+.        +|+|+.||||+++++||+|+....++++
T Consensus         5 t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   76 (166)
T d1xo7a_           5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGF--------GYKGSIFHRVIRNFMIQGGDFTNFDGTG   76 (166)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccc--------cccCcEEEEEcCCCEEEeCCCCCCCCCC
Confidence            56899999999999999999999999999999999999986322        4999999999999999999999888888


Q ss_pred             CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +.+.++..++++.. ..|+.+|+|+|++.+||+++|||||++++.|+||++|+|||+|++||++|++|++++++.+++|.
T Consensus        77 ~~~~~~~~~~~~~~-~~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~  155 (166)
T d1xo7a_          77 GKSIYGTRFDDENL-KIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPK  155 (166)
T ss_dssp             CCBTTBSCBCCCCC-CSCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             CCCCCCcccccccc-cccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCC
Confidence            88877777766665 45567899999999999999999999999999999999999999999999999999998889999


Q ss_pred             cceEecccccc
Q 018089          163 ADVTITDCGEI  173 (361)
Q Consensus       163 ~~v~I~~~~~~  173 (361)
                      .+|.|.+|+++
T Consensus       156 ~~i~I~~cgvl  166 (166)
T d1xo7a_         156 KAVKINDCGVL  166 (166)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeeEeC
Confidence            99999999975

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=2.2e-41  Score=282.53  Aligned_cols=162  Identities=53%  Similarity=0.897  Sum_probs=120.2

Q ss_pred             CEEEEEEE-----eCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCC
Q 018089            4 PRCFLDIS-----IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAG   78 (361)
Q Consensus         4 ~~~~~~~~-----~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~   78 (361)
                      ++|||||+     ++.|++|+|+||||.+.||+||+||++||+++.+.        +|+++.||||+|+|++|+||+..+
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~--------~y~~~~f~ri~~~~~iq~G~~~~~   73 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRESTFHRIIPNFMIQGGDFTRG   73 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTT--------SSTTCBCCEEETTTEEEECC----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccc--------cccCceeeEEEEEEeeEcCCccCC
Confidence            58999998     77789999999999999999999999999975322        499999999999999999999888


Q ss_pred             CCCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEe--cChHHHHHHhccCCC
Q 018089           79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTG  156 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~--~g~~vl~~i~~~~~~  156 (361)
                      +++++.+.++..+.+++..+.|+++|+|||++.+|++++|||||++++.|+||++|+|||+|+  +|++++++|+.+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~  153 (171)
T d2c3ba1          74 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  153 (171)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCC
Confidence            888888888888888888999999999999999999999999999999999999999999999  499999999999987


Q ss_pred             CC-CCcccceEecccccc
Q 018089          157 DN-DCPIADVTITDCGEI  173 (361)
Q Consensus       157 ~~-~~P~~~v~I~~~~~~  173 (361)
                      .. ..|..++.|.+|+.+
T Consensus       154 ~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         154 SGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCcCCCCCEEEEeCccC
Confidence            74 468999999999864

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-41  Score=277.49  Aligned_cols=152  Identities=51%  Similarity=0.860  Sum_probs=142.2

Q ss_pred             CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +|+|+|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+++|+|||||+. +.+++
T Consensus        11 ~p~v~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~   73 (166)
T d1xwna1          11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCEEEEEES-----SCEEEEEECTTTCHHHHHHHHHHHHHT-----------SSTTCCEEEEETTTEEEECCST-TTTSS
T ss_pred             CCEEEEEEC-----ceeEEEEEcCCCChHHHHHHHHHHhcC-----------CcCceeeeEEcccEEEEeCCCC-CCCCC
Confidence            689999988     799999999999999999999999987           8999999999999999999986 56778


Q ss_pred             CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      +.++++..+++|. ..+.|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++|++++++|++++++.++.|
T Consensus        74 ~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  153 (166)
T d1xwna1          74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCB
T ss_pred             CccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCC
Confidence            8889999999885 578899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEecccc
Q 018089          162 IADVTITDCG  171 (361)
Q Consensus       162 ~~~v~I~~~~  171 (361)
                      ..+|+|..+.
T Consensus       154 ~~~I~I~~a~  163 (166)
T d1xwna1         154 VDDVKIIKAY  163 (166)
T ss_dssp             SSCCCEEEEE
T ss_pred             CCCeEEEEee
Confidence            9999998764

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=273.38  Aligned_cols=150  Identities=48%  Similarity=0.767  Sum_probs=136.4

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||++.||+||+||++||+++           ||+|+.||||+++|+|||||+... +.++...++..+++|
T Consensus         7 T~~G~i~ieL~~~~aP~tv~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e   74 (159)
T d2ok3a1           7 TDVGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDE   74 (159)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCC
T ss_pred             eCCeEEEEEEcCCCChHHHHHHHHHHhhh-----------cccceeEecccCCeEEEeCCcccc-CCCCcccCCCccccc
Confidence            45899999999999999999999999987           899999999999999999998644 555566788888877


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC-CCcccceEeccccc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE  172 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~  172 (361)
                      .. .++|+++|+|+|++.+|+++||||||++++.|+||++|+|||+|++||+++++|++++++.. ..|..+|+|.+|.+
T Consensus        75 ~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i  154 (159)
T d2ok3a1          75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (159)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEE
T ss_pred             cccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEE
Confidence            54 68899999999999999999999999999999999999999999999999999999998764 67999999999998


Q ss_pred             cCCC
Q 018089          173 IPEG  176 (361)
Q Consensus       173 ~~~~  176 (361)
                      +..+
T Consensus       155 ~~~P  158 (159)
T d2ok3a1         155 HANP  158 (159)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            8654

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-39  Score=273.80  Aligned_cols=150  Identities=45%  Similarity=0.752  Sum_probs=139.3

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+++           ||+|+.||||+++++|||||+. ..|+++.+.++.++++|
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~~-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E   74 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDE   74 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCc
Confidence            55999999999999999999999999987           8999999999999999999976 46888888899999988


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCC-CCCcccceEeccccc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGE  172 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~-~~~P~~~v~I~~~~~  172 (361)
                      .. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++. ++.|..+|+|.++.+
T Consensus        75 ~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~I  154 (178)
T d1zkca1          75 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV  154 (178)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred             cccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEE
Confidence            54 6899999999999999999999999999999999999999999999999999999998864 589999999999999


Q ss_pred             cCCC
Q 018089          173 IPEG  176 (361)
Q Consensus       173 ~~~~  176 (361)
                      +..+
T Consensus       155 l~~p  158 (178)
T d1zkca1         155 FVDP  158 (178)
T ss_dssp             EECT
T ss_pred             EcCC
Confidence            8554

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.9e-39  Score=266.73  Aligned_cols=145  Identities=50%  Similarity=0.751  Sum_probs=135.9

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||++.||+||+||+.||+++           ||+|+.||||+++++|||||+. +.+.++.+.+|..++++
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~~~g-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~   75 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDE   75 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHhhCC-----------ccccceeeeeeecceeeccCCC-CCCcCCcccCCCccccc
Confidence            56999999999999999999999999987           8999999999999999999986 55677888899999988


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEecccc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG  171 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~  171 (361)
                      .. .+.|.++|+++|++.+|++++|||||++++.|+||++|+|||+|++||+++++|++++++.++.|..+|+|.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~  153 (155)
T d2fu0a1          76 FFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIK  153 (155)
T ss_dssp             CBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEE
T ss_pred             cccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEE
Confidence            76 588889999999999999999999999999999999999999999999999999999998999999999998874

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=6.5e-39  Score=266.93  Aligned_cols=145  Identities=50%  Similarity=0.755  Sum_probs=133.5

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||++.||+||+||++||+.+           ||+|+.||||+++|++|||+.. +.+.++.++++..+++|
T Consensus        23 T~~G~i~IeL~~d~aP~tv~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~g~~~-~~~~~~~~~~~~~~~~e   90 (169)
T d2b71a1          23 TNLGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDE   90 (169)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSCBCCC
T ss_pred             eCceeEEEEEeCCCCcHHHHHHHHHhhCC-----------ccceeeeccccceeeEeccccc-cccCCCccccccccccc
Confidence            44899999999999999999999999987           9999999999999999999976 44556677778888887


Q ss_pred             Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEecccc
Q 018089           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG  171 (361)
Q Consensus        95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~  171 (361)
                      .. .++|.++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||++|++|++++++.+++|..+|+|.++.
T Consensus        91 ~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          91 INKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             cccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            54 689999999999999999999999999999999999999999999999999999999999899999999998764

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.1e-39  Score=266.22  Aligned_cols=153  Identities=31%  Similarity=0.490  Sum_probs=135.6

Q ss_pred             CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|.|+++     .|+|+||||++.||+||+||++||+++           ||+||.||||+++|++|+|+.....+.
T Consensus         3 g~~~V~l~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~~-----------~Y~g~~fhRv~~~~~iq~G~~~~~~~~   66 (166)
T d1v9ta_           3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQQ   66 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTCCB
T ss_pred             CCCEEEEEEC-----CeeEEEEEeCCCChHHHHHHHHHhhCC-----------ccccceeeEEEEEeecccCCcCCcccc
Confidence            4899999887     899999999999999999999999987           999999999999999999998755444


Q ss_pred             CCCccCCCCCCCCCcCCCCCCceEEEeeeCC-CCCCCcceEeecCCCCCCCC-----CceEEeEEecChHHHHHHhccCC
Q 018089           82 GGESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMT  155 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld~-----~~~vfG~v~~g~~vl~~i~~~~~  155 (361)
                      +   .++.++++|.....|+.+|.|+|++.+ |++++|||||++.+.|+||+     +|+|||+|++||+++++|+++++
T Consensus        67 ~---~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~  143 (166)
T d1v9ta_          67 K---KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             C---CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             c---CCCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcc
Confidence            3   457788999877777788999998855 99999999999999998886     48999999999999999999887


Q ss_pred             CCC----CCcccceEecccccc
Q 018089          156 GDN----DCPIADVTITDCGEI  173 (361)
Q Consensus       156 ~~~----~~P~~~v~I~~~~~~  173 (361)
                      +..    ++|..+|+|.+|+++
T Consensus       144 ~~~~~~~~~P~~~v~I~~~~vl  165 (166)
T d1v9ta_         144 HDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             EEETTEEEEESSCCBEEEEEEC
T ss_pred             cCCCCCCCccCCCeEEEEEEEc
Confidence            653    379999999999886

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=257.08  Aligned_cols=147  Identities=48%  Similarity=0.667  Sum_probs=129.0

Q ss_pred             CeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCC
Q 018089           14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED   93 (361)
Q Consensus        14 ~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   93 (361)
                      .|++|+|+||||.+.||+||+||++||+++           ||+|+.||||+++|++|+|++......+.... +..+.+
T Consensus        15 ~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g-----------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~-~~~~~~   82 (164)
T d2a2na1          15 HTSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPTGTGMGGESIW-GGEFED   82 (164)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTTSSSSCCCCTT-SSCBCC
T ss_pred             EeceeEEEEEEcCCCChHHHHHHHHHHhCC-----------CcccceeeEEeeeeeEeecccccccCCCceee-eccccc
Confidence            466999999999999999999999999987           89999999999999999999875543333333 334444


Q ss_pred             C-CcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCC-CCCcccceEecccc
Q 018089           94 E-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCG  171 (361)
Q Consensus        94 e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~-~~~P~~~v~I~~~~  171 (361)
                      + ...++|+++|+++|++.+++++||||||++++.|+||++|+|||+|++||+++++|++++++. ++.|..+|.|.++.
T Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~  162 (164)
T d2a2na1          83 EFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINIT  162 (164)
T ss_dssp             CCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEE
T ss_pred             ccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEE
Confidence            4 557899999999999999999999999999999999999999999999999999999999875 47999999998875


Q ss_pred             c
Q 018089          172 E  172 (361)
Q Consensus       172 ~  172 (361)
                      +
T Consensus       163 i  163 (164)
T d2a2na1         163 V  163 (164)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.2e-37  Score=256.35  Aligned_cols=154  Identities=44%  Similarity=0.717  Sum_probs=132.5

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCC----CCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP----NTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLK   90 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~----~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~   90 (361)
                      |+.|+|+||||++.||+||+||++||+++++++.    ...+..||+|+.|||+++++++|||++.. .+.+++   ...
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~   85 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYK   85 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---ccc
Confidence            5699999999999999999999999998866532    13345689999999999999999999763 333333   233


Q ss_pred             CCCC-CcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEe--cChHHHHHHhccCCCCCCCcccceEe
Q 018089           91 FEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI  167 (361)
Q Consensus        91 ~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~--~g~~vl~~i~~~~~~~~~~P~~~v~I  167 (361)
                      +.+| +..++|+++|+++|++.+|++++|||||++++.|+||++|+|||+|+  +||+++++|++++++.++.|..+|+|
T Consensus        86 ~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I  165 (171)
T d1w74a_          86 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI  165 (171)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEE
T ss_pred             cccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEE
Confidence            4555 45788999999999999999999999999999999999999999999  59999999999999999999999999


Q ss_pred             ccccc
Q 018089          168 TDCGE  172 (361)
Q Consensus       168 ~~~~~  172 (361)
                      .++.+
T Consensus       166 ~~v~i  170 (171)
T d1w74a_         166 ESITI  170 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88753

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.8e-37  Score=253.30  Aligned_cols=145  Identities=33%  Similarity=0.529  Sum_probs=124.9

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+.+           ||+||.||||+++|++|+|++....+.+   .++.++++|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~~~g-----------~Y~g~~fhrv~~~~~iq~G~~~~~~~~~---~~~~~~~~e   71 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNE   71 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTTEEC---CCCCCBCCC
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHHHcc-----------CcCCceeeEEcCCceeeeeccccCCcCC---ccCCCcccc
Confidence            44999999999999999999999999987           8999999999999999999986544332   347778888


Q ss_pred             CcCCCCCCceEEEeeeC-CCCCCCcceEeecCCC--------CCCCCCceEEeEEecChHHHHHHhccCCCCC----CCc
Q 018089           95 NFELKHERKGMLSMANA-GPNTNGSQFFITTTRT--------SHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCP  161 (361)
Q Consensus        95 ~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~--------~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~----~~P  161 (361)
                      .....++.+|.|+|++. +|++++|||||++.+.        |++|++|+|||+|++||+++++|+.++++..    ++|
T Consensus        72 ~~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P  151 (164)
T d1lopa_          72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP  151 (164)
T ss_dssp             CCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred             ccccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCc
Confidence            66666667799999876 5999999999999765        7899999999999999999999999988654    379


Q ss_pred             ccceEecccccc
Q 018089          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~~  173 (361)
                      ..+|.|.++.+.
T Consensus       152 ~~~v~I~~v~I~  163 (164)
T d1lopa_         152 KEDVIIESVTVS  163 (164)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999887654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.93  E-value=7.1e-25  Score=181.98  Aligned_cols=158  Identities=24%  Similarity=0.397  Sum_probs=144.8

Q ss_pred             CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +..+..+.++.+..+++.|+.+|+.|+|.+|+..|++||.+++....   ..........+....+|+|+|.||+++++|
T Consensus         4 ~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG---LSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS---CCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc---cchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            56788899999999999999999999999999999999998764422   222334457778889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      .+|+.+|+++|.++|.+.++++++|.+|..+|+|++|+.+|+++++++|+|+.+...+..+...+.++.+++++.|++||
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 018089          361 Q  361 (361)
Q Consensus       361 ~  361 (361)
                      +
T Consensus       161 ~  161 (168)
T d1kt1a1         161 K  161 (168)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=8.1e-25  Score=181.74  Aligned_cols=169  Identities=32%  Similarity=0.549  Sum_probs=151.0

Q ss_pred             CCCCCCCCCCCCcCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHH
Q 018089          186 NDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ  265 (361)
Q Consensus       186 ~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (361)
                      ++||.|+++|++........+..+..+..++..|+.++..|+|.+|+..|++||.+.+......  .......++|....
T Consensus         1 ~~gd~~~d~p~d~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~   78 (169)
T d1ihga1           1 GSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA--EDADGAKLQPVALS   78 (169)
T ss_dssp             SSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS--CHHHHGGGHHHHHH
T ss_pred             CCCCCCCCCchhhHHCHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh--hhHHHHHhChhhHH
Confidence            3799999999999888888999999999999999999999999999999999998775332211  11222346888999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      ++.|+|.|++++|+|++|+.+|++||+++|+++++|+++|.+|..+|++++|+.+|+++++++|+|..+...|..+...+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 018089          346 HERREQEKKQY  356 (361)
Q Consensus       346 ~~~~~~~k~~~  356 (361)
                      ++.++++|+.|
T Consensus       159 ~~~~~~~k~~y  169 (169)
T d1ihga1         159 KAQKDKEKAAY  169 (169)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHHhcC
Confidence            99888877643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-24  Score=179.44  Aligned_cols=158  Identities=28%  Similarity=0.412  Sum_probs=144.6

Q ss_pred             CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      ++.+.+++++.+..+++.|+.+|+.|+|++|+..|++||++++..   ............+....+|.|+|.||+++|+|
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~   78 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE---SSFSNEEAQKAQALRLASHLNLAMCHLKLQAF   78 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---cccchHHHhhhchhHHHHHHHHHHHHHhhhhc
Confidence            457888999999999999999999999999999999999987643   22233344556778888999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018089          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      ++|+.+|++||.++|+++++++++|.+|..+|+|++|+.+|+++++++|+|+.+...+..+...+.+..+++++.|++||
T Consensus        79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  158 (170)
T d1p5qa1          79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  158 (170)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 018089          361 Q  361 (361)
Q Consensus       361 ~  361 (361)
                      +
T Consensus       159 ~  159 (170)
T d1p5qa1         159 E  159 (170)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.90  E-value=1.2e-22  Score=165.64  Aligned_cols=148  Identities=26%  Similarity=0.263  Sum_probs=130.5

Q ss_pred             CCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC
Q 018089          200 QTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD  279 (361)
Q Consensus       200 ~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~  279 (361)
                      .+..+.++.++.+..++..|+.+|+.|+|.+|+..|++||++++.....  ..........+....+++|+|.||+++++
T Consensus         5 ~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           5 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--DDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh--hhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            3567888999999999999999999999999999999999977644222  12222234566677899999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       280 ~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      |++|+.+|++||+++|.++++|+++|.+|..+|++++|+.+|+++++++|+|..+...+..+..++++.+
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999988887654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.6e-21  Score=148.01  Aligned_cols=115  Identities=27%  Similarity=0.306  Sum_probs=110.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+++.|+.+++.|+|++|+..|+++|+                  .+|.++.+|.++|.||.++|++++|+.+|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   63 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT   63 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCcchhhhhcccccccccccccccchhhhhH
Confidence            467789999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +.++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+...++.++.
T Consensus        64 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          64 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999988864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.8e-20  Score=150.37  Aligned_cols=123  Identities=24%  Similarity=0.364  Sum_probs=116.5

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      ..++.|+.++.+||.+++.|+|++|+.+|+++++                  ++|.+..+|.++|.|++.+|++++|+.+
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~   66 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGD   66 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc------------------cchhhhhhhhhhHHHHHhccccchHHHH
Confidence            4457899999999999999999999999999999                  8899999999999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      |+++|+++|.+..+|+++|.++..+|++++|+.+|+++++++|++..+...+..+...+++
T Consensus        67 ~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          67 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998888765554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2e-19  Score=151.90  Aligned_cols=104  Identities=25%  Similarity=0.366  Sum_probs=99.8

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .|+.+++.||.+++.|+|++|+..|++||.                  ++|.++.+|+|+|.||+++|+|++|+.+|++|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~------------------~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a   64 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHH
Confidence            467899999999999999999999999999                  88899999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      |.++|+++++|+++|.+|..+|++++|+.+|++|++++|++.
T Consensus        65 l~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999999999999999999999998644

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.3e-18  Score=132.29  Aligned_cols=118  Identities=30%  Similarity=0.376  Sum_probs=106.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .|..++++|+.++..|+|++|+.+|+++|+                  ++|.+..++.|+|.||.++|+|++|+.+|++|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            578899999999999999999999999999                  88888999999999999999999999999999


Q ss_pred             hhcCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       291 l~~~p~~~-------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      |.++|.+.       ++|+++|.++..++++++|+.+|++++.++| ++.+...+..+++.+++
T Consensus        65 l~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~~~k~lke  127 (128)
T d1elra_          65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (128)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhC
Confidence            99998774       5778888899999999999999999999987 56777777777666554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=124.40  Aligned_cols=114  Identities=14%  Similarity=0.177  Sum_probs=103.5

Q ss_pred             HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHhh
Q 018089          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMR  292 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Ai~~~~~al~  292 (361)
                      .++.|.+...++|++|.+.|++++.                  .+|.++.+++|+|.|+++.+   ++++|+..+++++.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~------------------~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~   64 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP   64 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            4578899999999999999999999                  89999999999999998754   56679999999999


Q ss_pred             cCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          293 DGDDN--VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       293 ~~p~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      .+|.+  ..+++++|.+|..+|+|++|+.+|+++++++|++..+...+..+...+++
T Consensus        65 ~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            99866  46999999999999999999999999999999999999999888777653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=7.7e-16  Score=134.44  Aligned_cols=120  Identities=16%  Similarity=0.091  Sum_probs=111.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+..+|..+++.|+|++|++.|+++|+                  ++|.++.+|+++|.++.++|++++|+..|++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~------------------l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   96 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS   96 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc------------------cCCCCHHHHhhhchHHHHHHHHHHhhhhhhH
Confidence            3678899999999999999999999999999                  8888999999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ++.++|+++.+++++|.++..+|++++|+..|+++++++|++......+..+......
T Consensus        97 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_          97 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999998877766665555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=1.1e-15  Score=122.60  Aligned_cols=118  Identities=18%  Similarity=0.174  Sum_probs=105.5

Q ss_pred             hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc----------CCHHHHHHHH
Q 018089          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----------GDLKGALLDT  287 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----------~~~~~Ai~~~  287 (361)
                      .+..+-+.+.|++|+..|+++++                  ++|.++.+++++|.++..+          +.+++|+..|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~------------------~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~   64 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF   64 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHh------------------hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            45677788999999999999999                  9999999999999999865          4568999999


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089          288 EFAMRDGDDNVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~g~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++||+++|+++.+|+++|.+|..+|+           |++|+++|+++++++|++..++..|+.+.+..+.+.+..|
T Consensus        65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988764           7999999999999999999999999999888776665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4e-15  Score=125.05  Aligned_cols=122  Identities=20%  Similarity=0.180  Sum_probs=104.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+++.|..++..|+|+.|++.|.++..                     ..+.+|+|+|.||+.+|++++|+.+|++|
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~---------------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kA   62 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQD---------------------PHSRICFNIGCMYTILKNMTEAEKAFTRS   62 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence            456788999999999999999999986422                     12457899999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----------------GIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~----------------~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+++|+++.+|+++|.++..+|++++|+.+|++|+...|.+.                .++..++.+...+++..++..
T Consensus        63 l~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_          63 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999876542                456677877777777666543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.58  E-value=2.8e-15  Score=121.66  Aligned_cols=119  Identities=13%  Similarity=0.081  Sum_probs=96.9

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+......|+.++..|+|++|+..|++||++.+.....      ......+....+|.|+|.||.++|+|++|+.++++
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~------~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhh------hhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            345555667999999999999999999999976643211      11124556778999999999999999999999999


Q ss_pred             HhhcCCC-----------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089          290 AMRDGDD-----------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       290 al~~~p~-----------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  334 (361)
                      +|.+.|.           ...+++++|.+|..+|++++|+.+|++++++.|.....
T Consensus        81 al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          81 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence            9977542           35689999999999999999999999999998755433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.56  E-value=3.8e-15  Score=113.94  Aligned_cols=96  Identities=9%  Similarity=0.008  Sum_probs=91.0

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      .......|..+++.|+|.+|+..|+++++                  .+|..+.+|.++|.++.+++++++|+.++++++
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al   77 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR   77 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcc------------------cccccchhhhhhhhhhhhhhhHHHhhccccccc
Confidence            34457889999999999999999999999                  888899999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL  325 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~  325 (361)
                      +++|++..+|+.+|.+|..+|++++|++.|++.+
T Consensus        78 ~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          78 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999876

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-14  Score=130.71  Aligned_cols=123  Identities=11%  Similarity=0.062  Sum_probs=82.2

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDT  287 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~  287 (361)
                      .+.++.+...|..+.+.+.+++|++.|++||+                  ++|.+..+|+++|.++..++ ++++|+.++
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~------------------lnP~~~~a~~~r~~~l~~l~~~~~eal~~~  101 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEEMNYI  101 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH------------------HCCCChHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            34566677778888888888888888888888                  66666666666666666654 366666666


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +++|+++|++..+|+++|.++..+|++++|+.+++++++++|.+..++..++.+...+++.+
T Consensus       102 ~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~  163 (315)
T d2h6fa1         102 TAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD  163 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhH
Confidence            66666666666666666666666666666666666666666666666666666655555433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.1e-14  Score=127.41  Aligned_cols=121  Identities=9%  Similarity=-0.021  Sum_probs=111.0

Q ss_pred             hHHHHhhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089          206 SWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       206 ~~~~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai  284 (361)
                      +..++.+..+..+|..+...+ ++++|+..|+++++                  .+|....+|.++|.++.++|++++|+
T Consensus        71 ~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~------------------~~p~~~~a~~~~~~~~~~l~~~~eAl  132 (315)
T d2h6fa1          71 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE------------------EQPKNYQVWHHRRVLVEWLRDPSQEL  132 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH------------------HHHhhhhHHHHHhHHHHhhccHHHHH
Confidence            333456778899999999876 59999999999999                  89999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      ..++++++++|.+..+|+++|.++..++++++|+.+|+++++++|.+..++..++.+...
T Consensus       133 ~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         133 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988877554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.9e-14  Score=126.21  Aligned_cols=87  Identities=14%  Similarity=0.146  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  338 (361)
                      ..|....++..++.++.++|++++|+..++++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..|
T Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l  379 (388)
T d1w3ba_         300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM  379 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45566678889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 018089          339 AVAKKKI  345 (361)
Q Consensus       339 ~~~~~~~  345 (361)
                      +.+..++
T Consensus       380 g~~~~~~  386 (388)
T d1w3ba_         380 GNTLKEM  386 (388)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            8886654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-13  Score=113.97  Aligned_cols=102  Identities=12%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+.++|+.++..|+|++|++.|++||+                  ++|..+.+|+|+|.|+.++|++++|+.+|++|+
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~------------------ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHH------------------HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34688999999999999999999999999                  899999999999999999999999999999999


Q ss_pred             hcCCCc----------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089          292 RDGDDN----------------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       292 ~~~p~~----------------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~  331 (361)
                      ...+.+                .++++++|.++..+|++++|++.|++|+++.|+.
T Consensus        98 ~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            865543                4789999999999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.6e-14  Score=125.97  Aligned_cols=106  Identities=18%  Similarity=0.207  Sum_probs=97.0

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+..+|..+...|++++|+..|++++.                  .+|....+|.++|.++.++|++++|+..|++++
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccc------------------cccccccchhhhhhcccccccchhHHHHHHHHH
Confidence            34567889999999999999999999998                  777888999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  335 (361)
                      +++|+++.+|+.+|.+|..+|++++|+..|++|++++|++..+.
T Consensus       234 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            99999999999999999999999999999999999999887643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.9e-13  Score=116.82  Aligned_cols=118  Identities=16%  Similarity=0.075  Sum_probs=103.5

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka  300 (361)
                      .+....+++.|+..+++++....              ..++....+++++|.+|.++|++++|+.+|++||.++|+++.+
T Consensus         8 ~~~~~~~~e~al~~~~e~l~~~~--------------~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a   73 (259)
T d1xnfa_           8 PLQPTLQQEVILARMEQILASRA--------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV   73 (259)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhhh--------------cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH
Confidence            34455678899999999886211              1356678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       301 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |+++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..++.
T Consensus        74 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  125 (259)
T d1xnfa_          74 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ  125 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999999988877766653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.36  E-value=6e-12  Score=95.63  Aligned_cols=88  Identities=20%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      .++++|.++++.|++.+|+..+++++..+|+++.+|+.+|.++..++++++|+.+|+++++++|++..++..|+.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 018089          346 HERREQEK  353 (361)
Q Consensus       346 ~~~~~~~k  353 (361)
                      ++..++.+
T Consensus        98 g~~~~A~~  105 (112)
T d1hxia_          98 HNANAALA  105 (112)
T ss_dssp             HHHHHHHH
T ss_pred             CCHHHHHH
Confidence            98888743

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-12  Score=118.10  Aligned_cols=124  Identities=17%  Similarity=0.161  Sum_probs=114.0

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+..+|..+++.|++++|+..|+++++                  ++|....++.++|.++..+|++.+|+..++++
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  297 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE------------------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA  297 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            455677889999999999999999999998                  66777889999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +...|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++.
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  359 (388)
T d1w3ba_         298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             hccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999988887766653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.1e-12  Score=95.23  Aligned_cols=89  Identities=21%  Similarity=0.116  Sum_probs=71.0

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      ++..+++|+.+++.|+|.+|+..|++|+++.+....           ..+....++.|+|.|+.++|++++|+..++++|
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-----------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            566889999999999999999999999996542210           112345788889999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhc
Q 018089          292 RDGDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~  311 (361)
                      +++|++..++.+++.....+
T Consensus        74 ~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          74 ELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHh
Confidence            99998888888887665443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.9e-12  Score=93.69  Aligned_cols=82  Identities=21%  Similarity=0.117  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~-------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~  337 (361)
                      .-++++|.+++++|+|.+|+.++++|+++.|.+       ..++.++|.++..+|++++|+..|+++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            446899999999999999999999999875543       6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 018089          338 LAVAKKKIH  346 (361)
Q Consensus       338 l~~~~~~~~  346 (361)
                      ++.+++.+.
T Consensus        86 l~~~~~~l~   94 (95)
T d1tjca_          86 LKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            998887664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.9e-12  Score=114.03  Aligned_cols=101  Identities=13%  Similarity=0.050  Sum_probs=96.1

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~  294 (361)
                      ..++|..+++.|+|++|+..|+++++                  .+|....+|.++|.++..+|++++|+..++++++++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   83 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQ------------------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK   83 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence            46789999999999999999999999                  788889999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~  333 (361)
                      |++..+++.+|.+|..+|++++|+..+++++.++|.+..
T Consensus        84 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_          84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             cccccccccccccccccccccccccchhhHHHhccchHH
Confidence            999999999999999999999999999999999997543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.7e-11  Score=93.87  Aligned_cols=87  Identities=21%  Similarity=0.182  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      +.+.|..++++|+|++|+..|+++|.++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 018089          347 ERREQEK  353 (361)
Q Consensus       347 ~~~~~~k  353 (361)
                      +.+++.+
T Consensus        86 ~~~~A~~   92 (117)
T d1elwa_          86 RFEEAKR   92 (117)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            8877643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=6e-11  Score=97.81  Aligned_cols=121  Identities=15%  Similarity=0.115  Sum_probs=102.5

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC----CCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE----GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~  285 (361)
                      ...+.+...|+.+...|++++|+..|.+|+.+.+.-.-..    .-.......+.+....++.+++.++..+|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            4577889999999999999999999999999765221110    011122346788888999999999999999999999


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhCCC
Q 018089          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA-------LKLEPN  330 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a-------~~l~p~  330 (361)
                      ++++++.++|.+..+|.+++.++..+|++.+|++.|+++       +.++|.
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999999998       456775

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.5e-11  Score=102.51  Aligned_cols=87  Identities=10%  Similarity=0.020  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  345 (361)
                      -+.+.|..+++.|+|++|+..|++||.++|.++.+|+++|.+|..+|+|++|+.+|++|++++|++..++..++.+...+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 018089          346 HERREQE  352 (361)
Q Consensus       346 ~~~~~~~  352 (361)
                      ++..++.
T Consensus        86 ~~~~~A~   92 (201)
T d2c2la1          86 ESYDEAI   92 (201)
T ss_dssp             TCHHHHH
T ss_pred             CCHHHHH
Confidence            8877764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3e-11  Score=97.52  Aligned_cols=91  Identities=13%  Similarity=0.045  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      .+..+...|..+++.|+|++|+.+|++|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 018089          343 KKIHERREQEK  353 (361)
Q Consensus       343 ~~~~~~~~~~k  353 (361)
                      ..+++.+++.+
T Consensus        89 ~~~g~~~eA~~   99 (159)
T d1a17a_          89 MALGKFRAALR   99 (159)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            99888777643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3e-11  Score=93.95  Aligned_cols=86  Identities=19%  Similarity=0.135  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      +..+-++|.+++..|+|++|+.+|+++|.++|+++.+++++|.+|..+|+|++|+.+++++++++|.+...+..++.+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34577999999999999999999999999999999999999999999999999999999999999998876666666555


Q ss_pred             HHHHHH
Q 018089          344 KIHERR  349 (361)
Q Consensus       344 ~~~~~~  349 (361)
                      .+....
T Consensus        84 ~lg~~~   89 (128)
T d1elra_          84 RIGNSY   89 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.7e-10  Score=110.46  Aligned_cols=116  Identities=8%  Similarity=-0.091  Sum_probs=84.3

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...|..+.+.+++..|+..|.+++.                  .++  ..++.++|.++..+++|++|+.+|.+|
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A  178 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCS------------------YIC--QHCLVHLGDIARYRNQTSQAESYYRHA  178 (497)
T ss_dssp             ------------------------CCHHHH------------------HHH--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhC------------------CCH--HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            345566778888888888888888888876                  444  358899999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  346 (361)
                      +.++|++..+|+++|.++...|++.+|+.+|.+|+.++|..+.++.+|..+.....
T Consensus       179 ~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999998766543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=1.5e-10  Score=94.30  Aligned_cols=91  Identities=13%  Similarity=0.088  Sum_probs=83.5

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      ..+..+.++|..+++.|+|++|+..|+++|+                  ++|..+.+|+++|.++..+|++++|+.++++
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~------------------~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~  136 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKK  136 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhh------------------hhhhhhhHHHhHHHHHHHccCHHHHHHHHHH
Confidence            4566788899999999999999999999999                  8888999999999999999999999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 018089          290 AMRDGDDNVKALFRQGQAYMALNDVDAAV  318 (361)
Q Consensus       290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~  318 (361)
                      |++++|++..++..++.++..+..+.++.
T Consensus       137 al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         137 AQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988877766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.02  E-value=5.7e-10  Score=90.73  Aligned_cols=88  Identities=15%  Similarity=0.106  Sum_probs=80.7

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+.++|.++++.|+|.+|+..|++++.                  ++|.+..+|+++|.|+..+|+|++|+.+|+++
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~------------------l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALG------------------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhh------------------cccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455677899999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHhcCCHHH
Q 018089          291 MRDGDDNVKALFRQGQAYMALNDVDA  316 (361)
Q Consensus       291 l~~~p~~~ka~~~~g~~~~~~~~~~~  316 (361)
                      +.++|++..++..++.+...++++.+
T Consensus       125 l~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         125 LEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999998877776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=1.6e-09  Score=95.81  Aligned_cols=131  Identities=17%  Similarity=0.103  Sum_probs=103.0

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~  289 (361)
                      +.++.+...|+.+...++|++|+++|.+|+++....            ...+....+|.++|.||.+++++++|+..+++
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~------------~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~  102 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN  102 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            356778888999999999999999999999954322            02345678899999999999999999999999


Q ss_pred             HhhcCCCc------hhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDN------VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~~p~~------~ka~~~~g~~~~~-~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++.+.+..      ..++.++|.+|.. ++++++|+..|++++++.+.+      ..++..++.+...++++.++.
T Consensus       103 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~  178 (290)
T d1qqea_         103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence            99876544      6788889988865 699999999999999885432      234566677766666665553

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.2e-10  Score=89.97  Aligned_cols=89  Identities=18%  Similarity=0.120  Sum_probs=81.8

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+.++|..+++.|+|++|+..++++|+                  ++|.++.+++++|.||..+|+|++|+.+|++|+
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~------------------~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALE------------------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhh------------------ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            45567799999999999999999999999                  889999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcCCHHHHH
Q 018089          292 RDGDDNVKALFRQGQAYMALNDVDAAV  318 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~  318 (361)
                      .++|++..+...++.++..++++.+..
T Consensus       124 ~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         124 QLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877766554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.96  E-value=4.4e-10  Score=89.95  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=77.0

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al  291 (361)
                      +..+.++|..+++.|+|++|++.|+++|+                  ++|.+..+|+++|.++..+|++++|+.++++++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~------------------~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLK------------------IDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccc------------------ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999                  889999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHhcC
Q 018089          292 RDGDDNVKALFRQGQAYMALN  312 (361)
Q Consensus       292 ~~~p~~~ka~~~~g~~~~~~~  312 (361)
                      .++|++..+...++.+...++
T Consensus       129 ~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         129 SLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999888876554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=3.7e-09  Score=95.07  Aligned_cols=118  Identities=9%  Similarity=0.001  Sum_probs=106.4

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--LKGALLDTEF  289 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~Ai~~~~~  289 (361)
                      ...+...+..+...+++.+|+..|+++++                  .+|.+..+|.++|.++..+++  +++|+..+++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~------------------~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  134 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEPNWARELELCAR  134 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHH------------------hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHH
Confidence            34556778888899999999999999999                  888999999999999888865  8999999999


Q ss_pred             HhhcCCCchhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089          290 AMRDGDDNVKAL-FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       290 al~~~p~~~ka~-~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  347 (361)
                      ++.++|.+..++ +.+|.++...+.+++|+..++++++++|.+..++..++.+...+.+
T Consensus       135 al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             HHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            999999999886 5678999999999999999999999999999999999998877654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=2e-08  Score=88.54  Aligned_cols=111  Identities=11%  Similarity=-0.041  Sum_probs=92.9

Q ss_pred             HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTE  288 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~  288 (361)
                      ..+..+.+.|+.+.+.|++++|+++|++++++.+..            ........++.++|.+|.. ++++++|+..++
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  142 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------------GQFRRGANFKFELGEILENDLHDYAKAIDCYE  142 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc------------ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence            356788999999999999999999999999965432            1233446778999988854 799999999999


Q ss_pred             HHhhcCCC------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089          289 FAMRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       289 ~al~~~p~------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~  332 (361)
                      +|+.+.+.      ...++.++|.++..+|+|++|+..|+++++..|.+.
T Consensus       143 ~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            99987432      256799999999999999999999999999998765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.5e-09  Score=81.20  Aligned_cols=86  Identities=9%  Similarity=-0.014  Sum_probs=72.3

Q ss_pred             HhhHHHHHhccHHHH---hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089          210 NAVDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~  286 (361)
                      ..+..+.+.|..+.+   .+++++|+..|++++..-                ..+....+++++|.||.++|+|++|+.+
T Consensus        31 ~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~----------------~~~~~~~~~~~Lg~~y~~~g~~~~A~~~   94 (122)
T d1nzna_          31 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----------------SKEEQRDYVFYLAVGNYRLKEYEKALKY   94 (122)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc----------------CCchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            356778889999986   567788999999998711                2345567999999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHhc
Q 018089          287 TEFAMRDGDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~g~~~~~~  311 (361)
                      ++++|+++|++..|...++.+...+
T Consensus        95 ~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          95 VRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999998888776553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.79  E-value=3.1e-09  Score=84.15  Aligned_cols=94  Identities=17%  Similarity=0.039  Sum_probs=78.2

Q ss_pred             hHHHHhhHHHHHhccHHHH----------hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHH
Q 018089          206 SWWMNAVDSIKVFGNEHYK----------KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL  275 (361)
Q Consensus       206 ~~~~~~a~~~~~~G~~~~~----------~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~  275 (361)
                      +..+..+..+...|..++.          .+.+++|+..|++|++                  ++|.+..+|+|+|.+|.
T Consensus        25 ~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~------------------l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1          25 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHH
T ss_pred             hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH------------------hcchhhHHHhhHHHHHH
Confidence            3344567888889998874          4566899999999999                  89999999999999998


Q ss_pred             hcCC-----------HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHH
Q 018089          276 KLGD-----------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA  317 (361)
Q Consensus       276 ~l~~-----------~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A  317 (361)
                      .+|+           |.+|+.++++||.++|++..++..++.+....+.+.++
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8764           79999999999999999999999998887655444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=3.8e-08  Score=74.36  Aligned_cols=84  Identities=13%  Similarity=0.080  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          264 SQIFTNSSACKLKL---GDLKGALLDTEFAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       264 ~~~~~nla~~~~~l---~~~~~Ai~~~~~al~~~p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      ....++.|.|..+-   .+.++||..++.+++.+|.. ..++|.+|.+|+.+|+|++|..+++++++++|+|..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            45678888888865   45679999999999999876 589999999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 018089          340 VAKKKIHE  347 (361)
Q Consensus       340 ~~~~~~~~  347 (361)
                      .++.++..
T Consensus       115 ~Ie~~~~k  122 (124)
T d2pqrb1         115 MVEDKIQK  122 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88877653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=1.3e-07  Score=84.63  Aligned_cols=105  Identities=11%  Similarity=-0.005  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCC
Q 018089          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDD  296 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~Ai~~~~~al~~~p~  296 (361)
                      ..++|++.|+++|.                  .+|.+..+|++++.+...++.          +.+|+..++++++.+|+
T Consensus        44 ~~~~al~~~~~~l~------------------~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk  105 (334)
T d1dcea1          44 LDESVLELTSQILG------------------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK  105 (334)
T ss_dssp             CSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            35899999999999                  888888999888888766544          78999999999999999


Q ss_pred             chhHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHHHHHHHH
Q 018089          297 NVKALFRQGQAYMALND--VDAAVESFEKALKLEPNDGGIKK-ELAVAKKKIHERR  349 (361)
Q Consensus       297 ~~ka~~~~g~~~~~~~~--~~~A~~~~~~a~~l~p~~~~~~~-~l~~~~~~~~~~~  349 (361)
                      +..+|+.+|.++..+++  +++|+..++++++++|.+..++. .++.+....+...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH
Confidence            99999999999988875  89999999999999999988765 4445554444433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.58  E-value=9.9e-09  Score=89.48  Aligned_cols=90  Identities=9%  Similarity=-0.041  Sum_probs=79.1

Q ss_pred             ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 018089          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (361)
Q Consensus       219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~  298 (361)
                      +..+++.|++++|++.|+++++                  .+|.+..++.+++.++..+|++++|+..++++++++|++.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~------------------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            5567889999999999999999                  8999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089          299 KALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~  326 (361)
                      .++..++.++...+..+++...+.+...
T Consensus        65 ~~~~~l~~ll~a~~~~~~a~~~~~~~~~   92 (264)
T d1zbpa1          65 PGASQLRHLVKAAQARKDFAQGAATAKV   92 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEEC
T ss_pred             HHHHHHHHHHHhccccHHHHHHhhhhhc
Confidence            9999988888877777776655544333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.2e-08  Score=95.37  Aligned_cols=110  Identities=12%  Similarity=0.029  Sum_probs=66.9

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHH
Q 018089          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~  302 (361)
                      ...+.|..|+..|.+++.                  +++.....+.++|.++.+.+++.+|+..+.+++.++|  ..+++
T Consensus        97 ~a~~~Y~~ai~~l~~~~~------------------l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~  156 (497)
T d1ya0a1          97 AASGFYTQLLQELCTVFN------------------VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV  156 (497)
T ss_dssp             HHHHHHHHHHHHHTC-------------------------------------------------CCHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHC------------------CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHH
Confidence            345556666666666655                  6778888999999999999999999999999998876  47899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          303 RQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       303 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++|.++..+++|++|+.+|++|++++|++..++..|+.+....++..++.
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~  206 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI  206 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999988777666654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2e-07  Score=82.22  Aligned_cols=106  Identities=16%  Similarity=0.038  Sum_probs=89.4

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .++...-.|..++..|++++|+..|+++++..+..             ..+....++.++|.++..+|++++|+..++++
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~-------------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   77 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG-------------WFYSRIVATSVLGEVLHCKGELTRSLALMQQT   77 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC-------------CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45666668999999999999999999999855422             23445678999999999999999999999999


Q ss_pred             hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      +.+.+..      ..+++.++.++...+++..|...+.+++.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9875432      57889999999999999999999999988643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.50  E-value=1e-07  Score=75.89  Aligned_cols=89  Identities=18%  Similarity=0.083  Sum_probs=71.0

Q ss_pred             HHHHHHH--HHHHHhcCCHHHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089          264 SQIFTNS--SACKLKLGDLKGALLDTEFAMRDGDDN------------VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       264 ~~~~~nl--a~~~~~l~~~~~Ai~~~~~al~~~p~~------------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p  329 (361)
                      ..++.++  |..++..|+|++|+..|++||++.|..            +.+|.++|.+|..+|+|++|+.++++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3444544  778889999999999999999988764            46899999999999999999999999998865


Q ss_pred             CC-----------HHHHHHHHHHHHHHHHHHHHH
Q 018089          330 ND-----------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       330 ~~-----------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ..           ..++..++.+...+++.+++.
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~  120 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAM  120 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHH
Confidence            21           235667788877777766553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=1.4e-06  Score=70.81  Aligned_cols=94  Identities=14%  Similarity=0.040  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc----------------------hhHHHHHHHHHHhcCCHHH
Q 018089          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDA  316 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~----------------------~ka~~~~g~~~~~~~~~~~  316 (361)
                      ++-.....+.+.|......|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            556677889999999999999999999999999987643                      3688999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089          317 AVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       317 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |+.+++++++++|.+..++..+..+...+++..++.
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl  121 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL  121 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHH
Confidence            999999999999999999999999988877766653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.41  E-value=6.7e-07  Score=77.56  Aligned_cols=77  Identities=19%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089          272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       272 ~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  348 (361)
                      .-.++.|++++|+..++++++.+|++..++..+|.++...|++++|++.|+++++++|++..+...++.+.......
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence            34567899999999999999999999999999999999999999999999999999999999998888876554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2.7e-07  Score=81.42  Aligned_cols=106  Identities=18%  Similarity=0.032  Sum_probs=88.1

Q ss_pred             hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a  290 (361)
                      .+..+...|..+...++++.|...|.++++..+.              ..+.....+.++|.+++.+|++++|+..++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  277 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--------------NNHFLQGQWRNIARAQILLGEFEPAEIVLEEL  277 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT--------------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc--------------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455677888999999999999999998873221              12334567889999999999999999999999


Q ss_pred             hh------cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089          291 MR------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       291 l~------~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~  330 (361)
                      +.      ..|....++..+|.+|..+|++++|++.|++|+++.+.
T Consensus       278 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         278 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            84      45667899999999999999999999999999998653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=4.5e-06  Score=73.56  Aligned_cols=114  Identities=13%  Similarity=0.074  Sum_probs=87.0

Q ss_pred             HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhc
Q 018089          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL-KLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~l~~~~~Ai~~~~~al~~  293 (361)
                      +...++...+.++++.|.+.|.+++.                  ..|.....|.+.|.... ..++.+.|...+++++..
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~------------------~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~  198 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKARE------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK  198 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHT------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45666777778888888888888887                  44445566777776543 457889999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHHH
Q 018089          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----GIKKELAVAKKKIH  346 (361)
Q Consensus       294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~----~~~~~l~~~~~~~~  346 (361)
                      .|++...|...+......|++++|...|+++++..|.++    .++.....-+...+
T Consensus       199 ~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G  255 (308)
T d2onda1         199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  255 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999877553    35665555544433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=3.9e-06  Score=63.04  Aligned_cols=79  Identities=10%  Similarity=0.048  Sum_probs=63.8

Q ss_pred             hHHHHHhccHHHH---hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH-HHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089          212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       212 a~~~~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~Ai~~~  287 (361)
                      ++..++.|..+.+   ..+.++|+..++++++                  .+|. ...+++++|.+|.++|+|++|+.++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~------------------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~   96 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYV   96 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH------------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh------------------cCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3455666777764   3567789999999887                  5553 4589999999999999999999999


Q ss_pred             HHHhhcCCCchhHHHHHHHHH
Q 018089          288 EFAMRDGDDNVKALFRQGQAY  308 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~g~~~  308 (361)
                      +++|+++|++..|..-+-.+-
T Consensus        97 ~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          97 DTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHccCCCcHHHHHHHHHHH
Confidence            999999999998876665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=1.1e-05  Score=71.06  Aligned_cols=75  Identities=7%  Similarity=-0.094  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  339 (361)
                      .+|...+..+..+|++++|...++++|...|.+ ..+|...+......++++.|...|+++++..|.+...+...+
T Consensus       100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a  175 (308)
T d2onda1         100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  175 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            344555555555555555555555555555443 234445555555555555555555555555555444444333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.92  E-value=5.8e-05  Score=64.27  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHH
Q 018089          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDT  287 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~~  287 (361)
                      ++++..+|..++.+++|.+|+++|++|.+                  .  .+..++.+||.+|..    ..++..|+.++
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~------------------~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~   61 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD------------------L--KENSGCFNLGVLYYQGQGVEKNLKKAASFY   61 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------C--CCHHHHHHHHHHHHcCCCcchhHHHHHHhh
Confidence            46788999999999999999999999976                  2  356789999999997    67999999999


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 018089          288 EFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p  329 (361)
                      ..+....  ++.+.+.+|.++..    ..+.+.|...++++.+..+
T Consensus        62 ~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          62 AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ccccccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9988766  77888899888765    4688999999999988754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.77  E-value=0.00013  Score=55.49  Aligned_cols=82  Identities=18%  Similarity=0.082  Sum_probs=59.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCchhH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~~~~al~~~p~~~ka  300 (361)
                      ..++++|+..|+++.+                    ..++.+++++|.+|..    ..++.+|+.+++++....  ++.+
T Consensus        36 ~~~~~~a~~~~~~aa~--------------------~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a   93 (133)
T d1klxa_          36 QINKQKLFQYLSKACE--------------------LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDG   93 (133)
T ss_dssp             TSCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             ccCHHHHHHHHhhhhc--------------------ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchH
Confidence            3456777777777654                    2345667778887775    456788888888887754  6778


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 018089          301 LFRQGQAYMA----LNDVDAAVESFEKALKLE  328 (361)
Q Consensus       301 ~~~~g~~~~~----~~~~~~A~~~~~~a~~l~  328 (361)
                      .+++|.+|..    ..++++|+.+|++|.++.
T Consensus        94 ~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          94 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            8888888776    457888888888887764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.68  E-value=0.00011  Score=62.50  Aligned_cols=106  Identities=25%  Similarity=0.208  Sum_probs=80.4

Q ss_pred             HHHHHhccHHHH----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHH
Q 018089          213 DSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGAL  284 (361)
Q Consensus       213 ~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai  284 (361)
                      ..+..+|..+..    ..+...+...++++.+                    ..+..+++++|.+|..    .+++++|+
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--------------------~g~~~A~~~lg~~y~~g~~~~~d~~~A~  202 (265)
T d1ouva_         143 DGCTILGSLYDAGRGTPKDLKKALASYDKACD--------------------LKDSPGCFNAGNMYHHGEGATKNFKEAL  202 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred             chhhhhhhhhccCCCcccccccchhhhhcccc--------------------ccccccccchhhhcccCcccccchhhhh
Confidence            344555666654    3455666666666644                    3457789999999987    67999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089          285 LDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~  342 (361)
                      .++.++.+..  ++.+++++|.+|..    ..++++|..+|++|..+.  +..+...|..+.
T Consensus       203 ~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~l~  260 (265)
T d1ouva_         203 ARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQLK  260 (265)
T ss_dssp             HHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHTCC
T ss_pred             hhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHHHH
Confidence            9999999985  78999999999986    458999999999999885  455666665543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.59  E-value=0.00021  Score=54.35  Aligned_cols=94  Identities=20%  Similarity=0.075  Sum_probs=75.3

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~  304 (361)
                      .+++++|+++|+++.+                  .  .+..++.+++.  ....++++|+.+++++.+.  .++.+.+.+
T Consensus         6 ~kd~~~A~~~~~kaa~------------------~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~L   61 (133)
T d1klxa_           6 KKDLKKAIQYYVKACE------------------L--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFL   61 (133)
T ss_dssp             HHHHHHHHHHHHHHHH------------------T--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH------------------C--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhH
Confidence            4689999999999977                  2  12344566653  4567899999999999886  489999999


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089          305 GQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       305 g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  344 (361)
                      |..|..    ..++++|+.+|+++.+.  .++.+...|+.+...
T Consensus        62 g~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          62 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            999886    56899999999999886  577888888877654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.06  E-value=0.12  Score=34.28  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=31.3

Q ss_pred             HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ++.|-.+-..+..+.+.|+|++||+++++|..++..+
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3456677778999999999999999999999977654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.56  E-value=0.4  Score=32.99  Aligned_cols=40  Identities=18%  Similarity=0.052  Sum_probs=33.8

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcc
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      .....|..+...|..+-+.|+|++|+.+|.+|++++....
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~   49 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL   49 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            3455688888999999999999999999999999876543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.84  E-value=1.3  Score=37.95  Aligned_cols=79  Identities=18%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  343 (361)
                      ..+|.....++++..+..-|.. +...+.++|+   -+.-.-..|...|.+++.+..|+.++.+++.+..+...|..+..
T Consensus        69 ~~~~k~~~~~l~~~~e~~la~i-~~~~~~~~~d---~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lya  144 (336)
T d1b89a_          69 TRTWKEVCFACVDGKEFRLAQM-CGLHIVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  144 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH-TTTTTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHH-HHHHhhcCHH---HHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence            3455555555665555544322 2222333333   33445666778889999999999988888888887777777655


Q ss_pred             HHH
Q 018089          344 KIH  346 (361)
Q Consensus       344 ~~~  346 (361)
                      +..
T Consensus       145 k~~  147 (336)
T d1b89a_         145 KFK  147 (336)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            443

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.46  Score=31.33  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=33.7

Q ss_pred             HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcc
Q 018089          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      ..++.|..+...|..+=+.|+|.+|+.+|.+|++++....
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l   45 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV   45 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            3456788888899999999999999999999999876543