Citrus Sinensis ID: 018103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MAAAIDMYNSSRSISDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSSYSPTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQINFQQQQQQQVASLASRASISSPKSNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLSEF
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHEHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEccEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEcHHHHHHHccc
Coil and Loop (DISEMBL)
maaaidmynssrsisdPFREELMKALEPFMKiassncssssgfssssyssyssyssyspttsseanffypdgynlcspsydtpmfsqglmsfeqqpisslglnhltpsQILQIQAQINFQQQQQQQVASLAsrasisspksnllspkavpmkhvsnaqvakptklyrgvrqrhwgkwvaeirlpknrtrlwlgtFDTAEEAALAYDQAAYKLRGEfarlnfphlkhhgahvtgefgdykplhasVDAKLQAICQNLALNNNVQKQTSKQQQQQQQeaetkpvllpataanikventsatslssptpdhslsdagssspesdvsfldfndtkwetemdafglekypsveiDWEAIRKLSEF
Flexible Loop (DISEMBL)
maaaidmynssrsisdpFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSSYSPTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQINFQQQQQQQVASLASRASISSPKsnllspkavpmkhvsnaqvakptklyrgvrqrhwgkwvaeirlpknrtrLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAETKPVLLPATAANIKVENtsatslssptpdHSLSDAGSSSPESDVSFLDFNDTKWETEMDAfglekypsveidWEAIRKLSEF
Low Complexity Region (SEG)
MAAAIDMYNSSRSISDPFREELMKALEPFMKIAssncssssgfssssyssyssyssyspttssEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSqilqiqaqinfqqqqqqqVASLASRASISSPKSNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTaeeaalaydqaayKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVqkqtskqqqqqqqEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLSEF
Disordered region (IsUnstruct)
*****************************************************************NFFYPDGYNLCSPSYDTPMFSQGLM***********LNHL********************************************************PTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALN****************************************************************FLDFNDTKWETEMDAFGLEKYPSVEIDWEAI******
Disordered Region (DISOPRED)
MAAAID******************ALEP*********************************************************************************************************************************************RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHL***************************************************************************************************FLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLSE*
Disordered Region (DISEMBL)
*********SSRSISDPFREELMKALEPFMKIASS**************************SSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQIN************************LLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNN******************KPVLLPATAANIKVEN***************************SFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLSEF
Disordered Region (DISPRO)
****************PFREELMKALEPF*K********************************EANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQINFQQQQQ**************************************TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLK****************HA****KLQAICQNLA*****************************************************************SFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLSEF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAIDMYNSSRSISDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSSYSPTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQINFQQQQQQQVASLASRASISSPKSNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLSEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q8H1E4	334	Ethylene-responsive trans	yes	no	0.913	0.985	0.476	2e-68
O65665	272	Ethylene-responsive trans	no	no	0.738	0.977	0.457	6e-67
Q9SIE4	261	Ethylene-responsive trans	no	no	0.641	0.885	0.471	3e-54
Q9LM15	261	Ethylene-responsive trans	no	no	0.547	0.754	0.540	2e-49
Q9FJQ2	277	Ethylene-responsive trans	no	no	0.730	0.949	0.395	3e-49
Q9SKW5	314	Ethylene-responsive trans	no	no	0.572	0.656	0.438	1e-41
Q9SVQ0	388	Ethylene-responsive trans	no	no	0.222	0.206	0.743	5e-31
Q9SKT1	336	Ethylene-responsive trans	no	no	0.172	0.184	0.870	7e-28
Q9M0J3	292	Ethylene-responsive trans	no	no	0.222	0.273	0.658	3e-24
Q9C7W2	335	Ethylene-responsive trans	no	no	0.277	0.298	0.633	1e-23

>sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1

 Score =  259 bits (663), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/357 (47%), Positives = 223/357 (62%), Gaps = 28/357 (7%)

Query: 1   MAAAIDMYNSSRSISDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSSYSPT 60
           MAAA+++Y  SRS  D    ELM AL PF+K  S + SSSS  S+S++   S++S   P 
Sbjct: 1   MAAAMNLYTCSRSFQDS-GGELMDALVPFIKSVSDSPSSSSAASASAFLHPSAFS-LPPL 58

Query: 61  TSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQINFQ 120
                  +YPD   L  P      FS G  S  QQ  S +GLN+L+ SQI QIQ+QI+  
Sbjct: 59  PG-----YYPDSTFLTQP------FSYG--SDLQQTGSLIGLNNLSSSQIHQIQSQIHHP 105

Query: 121 QQQQQQVASLASRASISSPKSNLLSPKAVPMKHVS--NAQVAKPTKLYRGVRQRHWGKWV 178
                   +  S +++ SPK  L+    V     +  +   +KPTKLYRGVRQRHWGKWV
Sbjct: 106 LPPTHHNNN-NSFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWV 164

Query: 179 AEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDY 238
           AEIRLP+NRTRLWLGTFDTAEEAALAYD+AAYKLRG+FARLNFP+L+H+G+H+ G+FG+Y
Sbjct: 165 AEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEY 224

Query: 239 KPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAETKPVLLPATAANIKVENTSA 298
           KPLH+SVDAKL+AIC+++A     QKQ    +  +++E   K V  P  +  +K E  S 
Sbjct: 225 KPLHSSVDAKLEAICKSMA---ETQKQDKSTKSSKKRE---KKVSSPDLSEKVKAEENSV 278

Query: 299 TSLSSPTPDHSLSDAGSSSPESDVSFLDFND-TKWETEMDAFGLEKYPSVEIDWEAI 354
           +   SP           SSP SD++F D  +  +W    + F LEKYPS EIDW++I
Sbjct: 279 SIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQWN---ETFSLEKYPSYEIDWDSI 332

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|O65665|ERF60_ARATH Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1

 Score =  254 bits (650), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 165/361 (45%), Positives = 206/361 (57%), Gaps = 95/361 (26%)

Query: 3   AAIDMYNSSRSISDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSSYSPTTS 62
           AAIDM+NS+   +DPF+EELMKAL+P+    ++N  SSS                     
Sbjct: 2   AAIDMFNSN---TDPFQEELMKALQPY----TTNTDSSS--------------------- 33

Query: 63  SEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQINFQQQ 122
                               P +S  +  F Q   +SLGLN LTP QI QIQ Q+N    
Sbjct: 34  --------------------PTYSNTVFGFNQ--TTSLGLNQLTPYQIHQIQNQLN---- 67

Query: 123 QQQQVASLASRASISSPKSNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIR 182
                     R +I SP    L+PK VPMK+++ AQ     KLYRGVRQRHWGKWVAEIR
Sbjct: 68  ---------QRRNIISPN---LAPKPVPMKNMT-AQ-----KLYRGVRQRHWGKWVAEIR 109

Query: 183 LPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLH 242
           LPKNRTRLWLGTFDTAEEAA+AYD AAYKLRGEFARLNFP  +H   +  G    + PLH
Sbjct: 110 LPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGG-SCFNPLH 168

Query: 243 ASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAETKPVLLPATAANIKVENTSATSLS 302
           +SVDAKLQ ICQ+L    ++    S+ +            L P      K E   +    
Sbjct: 169 SSVDAKLQEICQSLRKTEDIDLPCSETE------------LFPP-----KTEYQESEYGF 211

Query: 303 SPTPDHSLSDAG---SSSPESDV-SFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLS 358
             + ++S SD     SSSPES + +FLDF+D+ ++ E+ +FGLEK+PSVEIDW+AI KLS
Sbjct: 212 LRSDENSFSDESHVESSSPESGITTFLDFSDSGFD-EIGSFGLEKFPSVEIDWDAISKLS 270

Query: 359 E 359
           E
Sbjct: 271 E 271

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIE4|ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/265 (47%), Positives = 166/265 (62%), Gaps = 34/265 (12%)

Query: 100 LGLNHLTPSQILQIQAQINFQQQQQQQVASLASRASISSPKSNLLSPKAVPMKHVSNAQV 159
           LGLN LTP QI QIQ Q+N +            R++IS+     LSP  + MK+++    
Sbjct: 23  LGLNQLTPYQIHQIQNQLNHR------------RSTISN-----LSPNRIRMKNLT-PST 64

Query: 160 AKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARL 219
           +K   LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTF+TAE+AALAYDQAA++LRG+ A+L
Sbjct: 65  SKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKL 124

Query: 220 NFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAET 279
           NFP+L H          D  PL +SVD KLQAIC++L     +   + + ++        
Sbjct: 125 NFPNLIHE---------DMNPLPSSVDTKLQAICKSLRKTEEICSVSDQTKEYSVYSVSD 175

Query: 280 KP-VLLPATAANI-KVENTSATSLS--SPTPDHS--LSDAGSSSPESDVSFLDFNDTKWE 333
           K  + LP     + K E+     LS  SP  D +  L ++ +    SD +FLDF+DT++E
Sbjct: 176 KTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQAEYSSSDKTFLDFSDTEFE 235

Query: 334 TEMDAFGLEKYPSVEIDWEAIRKLS 358
            E+ +FGL K+PSVEIDW+AI KL+
Sbjct: 236 -EIGSFGLRKFPSVEIDWDAISKLA 259

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM15|RA213_ARATH Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana GN=RAP2-13 PE=1 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/220 (54%), Positives = 145/220 (65%), Gaps = 23/220 (10%)

Query: 141 SNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEE 200
           S+ LSPK V MK    +  AKPTKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDTAEE
Sbjct: 59  SHHLSPKPVSMKQTGTS-AAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEE 117

Query: 201 AALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNN 260
           AALAYD+AAYKLRG+FARLNFP L+H+         +Y+PL +SVDAKL+AICQNLA   
Sbjct: 118 AALAYDKAAYKLRGDFARLNFPDLRHN--------DEYQPLQSSVDAKLEAICQNLA--E 167

Query: 261 NVQKQTSKQQQQQQQEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPES 320
             QKQ    ++   ++  +        A  +  E+ S+   SSP    S    GSSSP S
Sbjct: 168 TTQKQVRSTKKSSSRKRSS------TVAVKLPEEDYSSAG-SSPLLTESYGSGGSSSPLS 220

Query: 321 DVSFLDFNDTKWETE--MDAFGLEKYPSVEIDWEAIRKLS 358
           +   L F DT+ E +   +   LEKYPS EIDW++I + S
Sbjct: 221 E---LTFGDTEEEIQPPWNENALEKYPSYEIDWDSILQCS 257

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJQ2|ERF57_ARATH Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/346 (39%), Positives = 184/346 (53%), Gaps = 83/346 (23%)

Query: 18  FREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSSYSPTTSSEANFFYPDGYNLCS 77
           + +E M+ALEPFMK+ SS             SS S+ S+  P T +    F P+   +  
Sbjct: 8   YVDEFMEALEPFMKVTSS-------------SSTSNSSNPKPLTPN----FIPNNDQVLP 50

Query: 78  PSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQINFQQQQQQQVASLASRASIS 137
            S  T                 +GLN LTP+QILQIQ +++ +Q Q ++ A         
Sbjct: 51  VSNQT---------------GPIGLNQLTPTQILQIQTELHLRQNQSRRRAG-------- 87

Query: 138 SPKSNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT 197
              S+LL+ K   MK +  A   KP KLYRGVRQR WGKWVAEIRLPKNRTRLWLGTF+T
Sbjct: 88  ---SHLLTAKPTSMKKIDVA--TKPVKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFET 142

Query: 198 AEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLA 257
           A+EAALAYDQAA+K+RG+ ARLNFP +   G +        + L  S++AK+++IC +  
Sbjct: 143 AQEAALAYDQAAHKIRGDNARLNFPDIVRQGHY-------KQILSPSINAKIESICNSSD 195

Query: 258 LNNNVQKQTSKQQQQQQQEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDA---- 313
           L             Q +++ +T+ VL               +  S P  +    +     
Sbjct: 196 L----------PLPQIEKQNKTEEVL---------------SGFSKPEKEPEFGEIYGCG 230

Query: 314 -GSSSPESDVSFLDF-NDTKWETEMDAFGLEKYPSVEIDWEAIRKL 357
              SSPESD++ LDF +D   E E    GL KYPS+EIDW+AI KL
Sbjct: 231 YSGSSPESDITLLDFSSDCVKEDESFLMGLHKYPSLEIDWDAIEKL 276

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKW5|ERF55_ARATH Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/244 (43%), Positives = 141/244 (57%), Gaps = 38/244 (15%)

Query: 21  ELMKALEPFMKIASSNCS------SSSGFSSSSYSSYSSYSSYSPTTS---SEANFFYPD 71
           ELM+AL+PF K AS++ S      S+  F+S+    +SS S Y+P  S   S +   YPD
Sbjct: 12  ELMEALQPFYKSASTSASNPAFASSNDAFASAPNDLFSSSSYYNPHASLFPSHSTTSYPD 71

Query: 72  GYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQINFQQQQQQQVASLA 131
            Y+             G M++     SS G +         +Q   N+Q Q   Q     
Sbjct: 72  IYS-------------GSMTYP----SSFGSD---------LQQPENYQSQFHYQNTITY 105

Query: 132 SRASISSPKSNLLSPKA---VPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRT 188
           +    ++   N + P     +     S+  V+KP KLYRGVRQRHWGKWVAEIRLP+NRT
Sbjct: 106 THQDNNTCMLNFIEPSQPGFMTQPGPSSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRT 165

Query: 189 RLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAK 248
           RLWLGTFDTAEEAALAYD+AA+KLRG+ ARLNFP L++       + G+Y P+ A+VDAK
Sbjct: 166 RLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAK 225

Query: 249 LQAI 252
           L+AI
Sbjct: 226 LEAI 229

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVQ0|ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1

 Score =  135 bits (340), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 67/82 (81%), Gaps = 2/82 (2%)

Query: 147 KAVPMKHVSN--AQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALA 204
           K  PMK  +    Q   PTKLYRGVRQRHWGKWVAEIRLP+NRTR+WLGTF+TAE+AA+A
Sbjct: 211 KTQPMKSKTRKVVQTTTPTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMA 270

Query: 205 YDQAAYKLRGEFARLNFPHLKH 226
           YD AAY LRGEFA LNFP LKH
Sbjct: 271 YDTAAYILRGEFAHLNFPDLKH 292

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKT1|ERF53_ARATH Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1

 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 54/62 (87%), Positives = 58/62 (93%)

Query: 163 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFP 222
           TKLYRGVRQRHWGKWVAEIR P+NRTRLWLGTFDTAEEAA+AYD+ A+KLRGE ARLNFP
Sbjct: 184 TKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243

Query: 223 HL 224
            L
Sbjct: 244 EL 245

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0J3|ERF54_ARATH Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 61/82 (74%), Gaps = 2/82 (2%)

Query: 144 LSPKAVPMKHVSNAQVAK--PTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEA 201
           LSP+   M  +S   V     TKLYRGVRQR WGKWVAEIR P++R RLWLGTFDTAEEA
Sbjct: 119 LSPRGRMMMMMSQEAVQPYIATKLYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEA 178

Query: 202 ALAYDQAAYKLRGEFARLNFPH 223
           A+AYD+ A+KLRG  A LNFP 
Sbjct: 179 AMAYDRQAFKLRGHSATLNFPE 200

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7W2|ERF61_ARATH Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 77/101 (76%), Gaps = 1/101 (0%)

Query: 157 AQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEF 216
            +V K  KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+DTAE AA AYD+AAYKLRGE+
Sbjct: 127 GRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEY 186

Query: 217 ARLNFPHLKHHGAHV-TGEFGDYKPLHASVDAKLQAICQNL 256
           ARLNFP+LK     +  G+      L  +VD K+Q+ICQ +
Sbjct: 187 ARLNFPNLKDPSELLGLGDSSKLIALKNAVDGKIQSICQRV 227

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
224083717	372	AP2/ERF domain-containing transcription	0.952	0.922	0.553	3e-91
262090294	351	DREB1C [Gossypium hirsutum]	0.933	0.957	0.587	2e-89
156601584	375	dehydrate responsive element-binding pro	0.955	0.917	0.548	4e-89
224096205	373	AP2/ERF domain-containing transcription	0.936	0.903	0.535	3e-86
428230424	376	ethylene-responsive element binding-fact	0.95	0.909	0.483	7e-81
148372103	276	TINY-like protein [Populus trichocarpa]	0.719	0.938	0.606	1e-79
359497190	374	PREDICTED: ethylene-responsive transcrip	0.888	0.855	0.509	5e-78
336109262	318	dehydration-responsive element binding p	0.866	0.981	0.522	1e-77
289466341	379	DRE transcription factor 1 [Vitis pseudo	0.95	0.902	0.531	6e-77
325534105	323	ethylene response factor 4 [Malus x dome	0.869	0.969	0.535	1e-76

>gi|224083717|ref|XP_002307098.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222856547|gb|EEE94094.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 212/383 (55%), Positives = 258/383 (67%), Gaps = 40/383 (10%)

Query: 1   MAAAIDMYNSSRSI-SDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSS------ 53
           MAAAID+YN++  + SDP REELMKALEPFMK AS + +S+    S S SS         
Sbjct: 1   MAAAIDIYNTTVPVFSDPCREELMKALEPFMKSASPSPTSTYSSPSPSTSSPPFSSHPSC 60

Query: 54  -YSSYSPTTSSEANFFYPD-GYNLCSPSYDTPMFSQGLMSFEQ---QPISSLGLNHLTPS 108
            Y++ S  +S      YP+   + CSP+  T MFS G + + Q   +    +GLNHLTPS
Sbjct: 61  FYNNNSLISS------YPNLDLSFCSPT-STQMFSNGFLDYNQMGFEQTGPIGLNHLTPS 113

Query: 109 QILQIQAQINFQQQQQQQVASLASRAS---ISSPKSNLLSPKAVPMKHVSNAQVAKPTKL 165
           QILQIQA+I+FQQQQQQ++ +LA+  S    +   SN L+PK VPMK  S A   KPTKL
Sbjct: 114 QILQIQAKIHFQQQQQQKMENLATTTSQFVHNQRASNFLAPKPVPMKQ-SAASPQKPTKL 172

Query: 166 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLK 225
           YRGVRQRHWGKWVAEIRLPKNRTRLWLGT+DTAEEAALAYD AAYKLRGE+ARLNFPHL+
Sbjct: 173 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTYDTAEEAALAYDNAAYKLRGEYARLNFPHLR 232

Query: 226 HHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNN-----------NVQKQTSKQQQQQQ 274
           H GAHV+GEFGDYKPLH+SVDAKLQAICQ+L L             N +K  +   Q + 
Sbjct: 233 HQGAHVSGEFGDYKPLHSSVDAKLQAICQSLGLQKQGKTREPSSVANSKKTATAPLQAKI 292

Query: 275 QEAETKPVLLPATAANIKVENTSATSLSSPTP---DHSLSDAGSSSPESDVSFLDFNDTK 331
           ++  +    L     N  VE+     + SP+P   D SL  AGSSSPES++SFLDF+ + 
Sbjct: 293 EDDCSLRGELKTEYENFGVEDYK-VEIPSPSPASSDESL--AGSSSPESEISFLDFSGSL 349

Query: 332 WETEMDAFGLEKYPSVEIDWEAI 354
              E + FGLEKYPSVEIDW +I
Sbjct: 350 QWDEFENFGLEKYPSVEIDWSSI 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262090294|gb|ACY25088.1| DREB1C [Gossypium hirsutum]

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 219/373 (58%), Positives = 256/373 (68%), Gaps = 37/373 (9%)

Query: 1   MAAAIDMYNSSRS---ISDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSS- 56
           MAAAIDMYNS+ +    SDPF  ELMKALEPFMK ASS    SS  S S  + Y  + S 
Sbjct: 1   MAAAIDMYNSNSNSSVFSDPFSAELMKALEPFMKSASSTSPLSSSSSYSQSNLYPEFCSP 60

Query: 57  YSPTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQ 116
           +     SE  F        C+         Q LM FEQ    S+GLN LTPSQILQIQAQ
Sbjct: 61  WRTHLCSEQGF--------CN--------YQNLMGFEQ--TGSIGLNQLTPSQILQIQAQ 102

Query: 117 INFQQQQQQQVASLASRASISSPKSNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGK 176
           I  QQQQQQ+VAS ++ AS+ + + N LSPKAVPMKHVS+    KPTKLYRGVRQRHWGK
Sbjct: 103 IYQQQQQQQEVASKSTTASLKNQRFNFLSPKAVPMKHVSSTP-PKPTKLYRGVRQRHWGK 161

Query: 177 WVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGEFG 236
           WVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AAYKLRGEFARLNFPHLKH GAH++GEFG
Sbjct: 162 WVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGEFARLNFPHLKHQGAHISGEFG 221

Query: 237 DYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQ---------QQQEAETKPVLL-PA 286
           DYKPLH++VDAKLQAICQ+L    N  K  S              +++E +  P    P 
Sbjct: 222 DYKPLHSAVDAKLQAICQSLQKQENSGKGCSVPDSNPKVEFDYPVKREEFDQSPRFASPK 281

Query: 287 TAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPS 346
              N    ++S+ S    + +   S AGSSSPESD++F DF+D+KW+ + + FGLEKYPS
Sbjct: 282 VEMNSLSSSSSSPSSPDLSDE---SLAGSSSPESDITFFDFSDSKWD-DNEIFGLEKYPS 337

Query: 347 VEIDWEAIRKLSE 359
           VEIDWEAIR+LSE
Sbjct: 338 VEIDWEAIRELSE 350

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156601584|gb|ABU86872.1| dehydrate responsive element-binding protein [Populus euphratica]

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 211/385 (54%), Positives = 257/385 (66%), Gaps = 41/385 (10%)

Query: 1   MAAAIDMYNSSRSI-SDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSS------ 53
           MAAAID+YN++  + SDP REELMKALEPFMK AS   +S+    S S S   S      
Sbjct: 1   MAAAIDIYNTTAPVFSDPCREELMKALEPFMKSASPPPTSTYSSPSPSTSPPFSSYPSCF 60

Query: 54  YSSYSPTTSSEANFFYPD-GYNLCSPSYDTPMFSQGLMSFEQ---QPISSLGLNHLTPSQ 109
           Y++ SP +S      YP+   + CSP+  T MFS G + + Q   +    +GLNHLTPSQ
Sbjct: 61  YNNNSPISS------YPNLDLSFCSPT-STQMFSNGFLDYNQMGFEQTGPIGLNHLTPSQ 113

Query: 110 ILQIQAQINFQQQQQQ-QVASLA--SRASISSPKSNLLSPKAVPMKHVSNAQVAKPTKLY 166
           ILQIQA+I+FQQQQQQ ++ +LA  S+   +   SN L+PK VPMK  S A   KPTKLY
Sbjct: 114 ILQIQAKIHFQQQQQQQKMENLATTSQCVHNRKASNYLAPKPVPMKQ-SGASPQKPTKLY 172

Query: 167 RGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKH 226
           RGVRQRHWGKWVAEIRLPKNRTRLWLGT+DTAEEAALAYD AAYKLRGE+ARLNFPHL+H
Sbjct: 173 RGVRQRHWGKWVAEIRLPKNRTRLWLGTYDTAEEAALAYDNAAYKLRGEYARLNFPHLRH 232

Query: 227 HGAHVTGEFGDYKPLHASVDAKLQAICQNLALNN-----------NVQKQTSKQQQQQQQ 275
            GAHV+GEFGDYKPLH+SVDAKLQAICQ+L L             N +K  +   Q + +
Sbjct: 233 QGAHVSGEFGDYKPLHSSVDAKLQAICQSLGLQKQGKTREPSSVANSKKTATAPLQAKIE 292

Query: 276 EAETKPVLLPATAANIKVEN------TSATSLSSPTPDHSLSDAGSSSPESDVSFLDFND 329
           +  +    L     N  VE+      + + S S  + D S+  AGSSSPES++SFLDF  
Sbjct: 293 DDCSMRGELKTEYENFGVEDYKVEIPSPSPSPSPASSDESV--AGSSSPESEISFLDFPG 350

Query: 330 TKWETEMDAFGLEKYPSVEIDWEAI 354
           +    E + FGLEKYPSVEIDW +I
Sbjct: 351 SLHWDEFENFGLEKYPSVEIDWSSI 375

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096205|ref|XP_002310574.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|118486817|gb|ABK95243.1| unknown [Populus trichocarpa] gi|222853477|gb|EEE91024.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 209/390 (53%), Positives = 253/390 (64%), Gaps = 53/390 (13%)

Query: 1   MAAAIDMYNSSRSI-SDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSS------ 53
           MAAAID+YN++  + SDP R ELM+ALEPFMK AS + +S+S  S S  +S  S      
Sbjct: 1   MAAAIDIYNTTVPVFSDPCRGELMEALEPFMKSASPSPASTSYSSQSPSTSSYSFSSYPS 60

Query: 54  --YSSYSPTTSS---EANFFYPDGYNLCSPSYDTPMFSQGL-----MSFEQQPISSLGLN 103
             +++  P TS    + NF+ P           T MFS G      M FEQ     +GLN
Sbjct: 61  CYHNNCFPVTSHPNLDLNFYTPT---------STQMFSNGFSGYNQMGFEQ--TGPIGLN 109

Query: 104 HLTPSQILQIQAQINFQQQQQQQVASLASRASISS-----PKSNLLSPKAVPMKHVSNAQ 158
           HLTPSQILQIQA+I+ QQQQQQ    +A+ A  S        SN L+PK VPMK  S + 
Sbjct: 110 HLTPSQILQIQAKIHLQQQQQQ--QQMANHAPTSQLVHNQRTSNFLAPKPVPMKQQSASP 167

Query: 159 VAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFAR 218
             KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AAYKLRGEFAR
Sbjct: 168 PPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGEFAR 227

Query: 219 LNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALN-----------NNVQKQTS 267
           LNFPHL+H GAHV+GEFGDYKPLH+SVDAKLQAICQ+L L            ++ +K  S
Sbjct: 228 LNFPHLRHQGAHVSGEFGDYKPLHSSVDAKLQAICQSLGLQKQGETGEPCSVSDSKKTVS 287

Query: 268 KQQQQQQQEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSD---AGSSSPESDVSF 324
              Q + ++  +    L     N+ VE      +  P+P  +LSD   AGSSSPES++SF
Sbjct: 288 APLQVKIEDDCSLQGELKREFENLGVEE---FKVEIPSPSPALSDESLAGSSSPESEISF 344

Query: 325 LDFNDTKWETEMDAFGLEKYPSVEIDWEAI 354
              +  +W+ E + FGLEKYPSVEIDW +I
Sbjct: 345 FFSDSLQWD-EFENFGLEKYPSVEIDWSSI 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428230424|gb|AFY98895.1| ethylene-responsive element binding-factor [Jatropha curcas]

 Score =  306 bits (785), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 186/385 (48%), Positives = 232/385 (60%), Gaps = 43/385 (11%)

Query: 1   MAAAIDMYNSSRSISDPFREELMKALEPFMKIASSNC-----------------SSSSGF 43
           MA  +D Y+S    SD F  ELM+ALEPFMK A+S+                    S+ +
Sbjct: 1   MATTMDFYSSRHVQSDLFGGELMEALEPFMKSATSSTIPSPSATPSISSSSLPPLPSTSY 60

Query: 44  SSSSYSSYSSYSSYSPTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFE----QQPISS 99
           +  S+S   S S          +F Y DG   CS S   P FS G    +    QQP SS
Sbjct: 61  NYLSFSPSPSSSPLVSFPQQNLSFLYSDG---CSTSTALP-FSNGFSIHDPNRLQQPTSS 116

Query: 100 LGLNHLTPSQILQIQAQINFQQQQQQQVASLASRASISSPKSNLLSPKAVPMKHVSNAQV 159
           +GLNHLTP+QI QIQ QI++Q Q      +  ++   +    N L PK VPMK V +   
Sbjct: 117 IGLNHLTPTQIHQIQTQIHYQNQNGFNFQNFHTQ---NQHGLNFLGPKPVPMKQVGSP-- 171

Query: 160 AKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARL 219
            KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AAYKLRG+FARL
Sbjct: 172 PKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL 231

Query: 220 NFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAET 279
           NFP+L+H G+H+ G FG+YKPLH+SVDAKLQAICQ+LA     QKQ  K ++Q    A+ 
Sbjct: 232 NFPNLRHQGSHIEGSFGEYKPLHSSVDAKLQAICQSLA---ESQKQGGKAEKQSNSSAKK 288

Query: 280 KPVL--LPATAANIK-------VENTSATSLSSPTPDHSLSDA-GSSSPESDVSFLDFND 329
           K  +   PATA  +K       V       + +P+   + S+A G SSP SD++F D  +
Sbjct: 289 KTSVGTTPATAEKVKEAKAPQQVVPDKCCKVETPSSVLTESEASGGSSPLSDLTFPDLEE 348

Query: 330 TKWETEMDAFGLEKYPSVEIDWEAI 354
              + +   F LEKYPS EIDW ++
Sbjct: 349 APLDVDSGNFNLEKYPSYEIDWASL 373

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148372103|gb|ABQ62983.1| TINY-like protein [Populus trichocarpa] gi|148372105|gb|ABQ62984.1| RAP2.4-like protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 171/282 (60%), Positives = 201/282 (71%), Gaps = 23/282 (8%)

Query: 90  MSFEQQPISSLGLNHLTPSQILQIQAQINFQQQQQQQVASLASRAS---ISSPKSNLLSP 146
           M FEQ     +GLNHLTPSQILQIQA+I+FQQQQQQ++ +LA+  S    +   SN L+P
Sbjct: 1   MGFEQ--TGPIGLNHLTPSQILQIQAKIHFQQQQQQKMENLATTTSQFVHNQRASNFLAP 58

Query: 147 KAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD 206
           K VPMK  S A   KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGT+DTAEEAALAYD
Sbjct: 59  KPVPMKQ-SAASPQKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTYDTAEEAALAYD 117

Query: 207 QAAYKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNN------ 260
            AAYKLRGE+ARLNFPHL+H GAHV+GEFGDYKPLH+SVDAKLQAICQ+L L        
Sbjct: 118 NAAYKLRGEYARLNFPHLRHQGAHVSGEFGDYKPLHSSVDAKLQAICQSLGLQKQGKTRE 177

Query: 261 -----NVQKQTSKQQQQQQQEAETKPVLLPATAANIKVENTSATSLSSPTP---DHSLSD 312
                N +K  +   Q + ++  +    L     N  VE+     + SP+P   D SL  
Sbjct: 178 PSSVANSKKTATAPLQAKIEDDCSLRGELKTEYENFGVEDYK-VEIPSPSPASSDESL-- 234

Query: 313 AGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAI 354
           AGSSSPES++SFLDF+ +    E + FGLEKYPSVEIDW +I
Sbjct: 235 AGSSSPESEISFLDFSGSLQWDEFENFGLEKYPSVEIDWSSI 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497190|ref|XP_003635449.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Vitis vinifera]

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 208/408 (50%), Positives = 254/408 (62%), Gaps = 88/408 (21%)

Query: 1   MAAAIDMYNSSRSISDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSSYS-- 58
           MAAAID+Y+SSR++    REELMKALEPFMK ASS  S +S +   S SS S  S+ S  
Sbjct: 1   MAAAIDIYSSSRTVFSE-REELMKALEPFMKGASSTSSLTSPYPYPSTSSLSPPSTSSSS 59

Query: 59  ------PTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPIS---SLGLNHLTPSQ 109
                 P  S++ N  YPD    CS S  T MFSQG   ++Q  +    S+GLNH+TP+Q
Sbjct: 60  LPFFSYPPDSTQPNM-YPD---FCSTS-TTHMFSQGFSGYDQMGLEQTRSIGLNHITPAQ 114

Query: 110 ILQIQAQINFQQQQQQQVASLASRASISSPKS---------NLLSPKAVPMKHVSNAQVA 160
           ILQIQAQI FQQQQQQ++A++A+ +SI + +          N L PKA+PMK V      
Sbjct: 115 ILQIQAQIQFQQQQQQRMAAVATASSIQNQRLSQWQQQHNLNFLGPKAIPMKQVGTP--P 172

Query: 161 KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLN 220
           KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AA+KLRGEFARLN
Sbjct: 173 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAFKLRGEFARLN 232

Query: 221 FPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAETK 280
           FP+L+H G+ V GEFGDYKPLH+SVDAKLQAICQNLA++             Q+Q    K
Sbjct: 233 FPNLRHQGSLVAGEFGDYKPLHSSVDAKLQAICQNLAIS-------------QKQGNSGK 279

Query: 281 PVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPES-------------------- 320
           P L+    A+ K+E  S+T  +    D+      SS PES                    
Sbjct: 280 PGLV----ADAKIE--SSTHQAEMVLDN------SSDPESGFLGLEDCKVEISSSSSSPS 327

Query: 321 --------------DVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAI 354
                         D+SFLDF D++W  + +   LEK+PSVEIDW +I
Sbjct: 328 PSDESSAGSSSPESDISFLDFTDSQW-NDSECLTLEKFPSVEIDWASI 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336109262|gb|AEI16474.1| dehydration-responsive element binding protein [Lespedeza potaninii]

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 188/360 (52%), Positives = 227/360 (63%), Gaps = 48/360 (13%)

Query: 1   MAAAIDMYNSSR----SISDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSS 56
           MAA +D YNS+       +DPFR ELM+ LEPFMK  SS  SSSS  SSSS S   S ++
Sbjct: 1   MAAMMDFYNSTEFQFEHHTDPFRGELMEVLEPFMKSPSSTPSSSS--SSSSSSYSPSPNN 58

Query: 57  YSPTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQ-QPISSL-GLNHLTPSQILQIQ 114
           Y P  SS  NF+                 +Q L+ F Q QP SSL GLNHLTPSQI QIQ
Sbjct: 59  YFP--SSLPNFY---------------SNTQNLIGFGQVQPTSSLLGLNHLTPSQISQIQ 101

Query: 115 AQINFQQQQQQQVASLASRASISSPKSNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHW 174
           AQI+ Q      + SL           NLL PK +PMKHV      KPTKLYRGVRQRHW
Sbjct: 102 AQIHVQNHN---INSL-----------NLLGPKPIPMKHV--GMPPKPTKLYRGVRQRHW 145

Query: 175 GKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGE 234
           GKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AAYKLRG+FARLNFP+L+H G+ V G+
Sbjct: 146 GKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGD 205

Query: 235 FGDYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAETKPVLLPATAANIKVE 294
           FG+YKPLH+SVDAKLQAIC+ LA    +QKQ   +++  ++       L P+    +   
Sbjct: 206 FGEYKPLHSSVDAKLQAICEGLA---ELQKQGKNEKKPSKKSRSK---LAPSPPEKLDSS 259

Query: 295 NTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAI 354
                  S P    S    G SSP SD++F D ++ +WE + + F L KYPS EIDW+++
Sbjct: 260 ENKVEVSSPPVTTESEGSEG-SSPLSDLTFADVSEPQWEGDSENFNLHKYPSYEIDWDSL 318

Source: Lespedeza potaninii

Species: Lespedeza potaninii

Genus: Lespedeza

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289466341|gb|ADC94856.1| DRE transcription factor 1 [Vitis pseudoreticulata]

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 208/391 (53%), Positives = 260/391 (66%), Gaps = 49/391 (12%)

Query: 1   MAAAIDMYNSSRSISDPFREELMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSSYS-- 58
           MAAAID+Y+SSR++    REELMKALEPFMK ASS  S +S +   S SS S  S+ S  
Sbjct: 1   MAAAIDIYSSSRTVFSE-REELMKALEPFMKGASSTSSLTSPYPYPSTSSLSPPSTSSSS 59

Query: 59  ------PTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPI---SSLGLNHLTPSQ 109
                 P  S++ N  YP     CS S  T MFSQG + ++Q  +    S+GLNH+TP+Q
Sbjct: 60  LPFFSYPPDSTQPNM-YP---GFCSTS-TTHMFSQGFLGYDQMGLEQTGSIGLNHITPAQ 114

Query: 110 ILQIQAQINFQQQQQQQVASLASRASISSPKS--------------NLLSPKAVPMKHVS 155
           ILQIQAQI FQQQQQQ++A++A+ +SI + +               N L PKA+PMK V 
Sbjct: 115 ILQIQAQIQFQQQQQQRMAAVATASSIQNQRLSQWQQQQQQQQHTLNFLGPKAIPMKQVG 174

Query: 156 NAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGE 215
                KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AA+KLRGE
Sbjct: 175 TP--PKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAFKLRGE 232

Query: 216 FARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALN------------NNVQ 263
           FARLNFP+L+H G+ V GEFGDYKPLH+SVDAKLQAICQNLA++            ++ +
Sbjct: 233 FARLNFPNLRHQGSLVAGEFGDYKPLHSSVDAKLQAICQNLAISQKQGNSGKPGLVSDAK 292

Query: 264 KQTSKQQQQQQQEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVS 323
            ++S  Q +   +  + P        + KVE +S++S  S       S AGSSSPESD+S
Sbjct: 293 IESSTHQAEMVLDNSSDPESGFLGLEDCKVEISSSSSSPS---PSDESSAGSSSPESDIS 349

Query: 324 FLDFNDTKWETEMDAFGLEKYPSVEIDWEAI 354
            LDF D++W  + +   LEK+PSVEIDW +I
Sbjct: 350 LLDFTDSQW-NDSECLTLEKFPSVEIDWASI 379

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325534105|gb|ADZ28107.1| ethylene response factor 4 [Malus x domestica]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 195/364 (53%), Positives = 234/364 (64%), Gaps = 51/364 (14%)

Query: 1   MAAAIDMYNSSR---SISDPFREE-LMKALEPFMKIASSNCSSSSGFSSSSYSSYSSYSS 56
           MA +ID+Y+SS     +SDP RE+ LMKAL P+MK             S+S +S S+  +
Sbjct: 1   MATSIDLYSSSTMTSDLSDPSREDQLMKALMPYMK-------------SASSTSPSTSYT 47

Query: 57  YSPTTSSEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSQILQIQAQ 116
           + P  +   N  YPD    CS     PM SQ           ++GLN LTPSQILQIQ+Q
Sbjct: 48  FPPQNNQNFNL-YPD---FCS----APMISQA---------GAIGLNQLTPSQILQIQSQ 90

Query: 117 INFQQQQQQQVASLASRASISSPKSNL--LSPKAVPMKHVSNAQVAKPTKLYRGVRQRHW 174
           +  QQ QQ+Q  S    A  SSP   L  L PKAVPMK       +KPTKLYRGVRQRHW
Sbjct: 91  MILQQHQQKQQIS----AFASSPAHTLKLLRPKAVPMKQAGTP--SKPTKLYRGVRQRHW 144

Query: 175 GKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKHHGAHVTGE 234
           GKWVAEIRLP+NRTRLWLGTFDTAEEAALAYD+AA+KLRG+FARLNFPHL+H GA V G+
Sbjct: 145 GKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDFARLNFPHLRHQGALVCGD 204

Query: 235 FGDYKPLHASVDAKLQAICQNLALNNNVQKQTSKQQQQQQQEAETKPVLLPATAANI--- 291
           FG YKPLH+SVDAKLQAICQ+L  N+  Q  T     +    AETKPV+     A +   
Sbjct: 205 FGHYKPLHSSVDAKLQAICQSLGANSTKQGNTG----EPCPVAETKPVVSAPLEAKMDDS 260

Query: 292 -KVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEID 350
            K E  S +   S +         SSSPESD++FLDF+D++W+ E + FGLEKYPSVEID
Sbjct: 261 FKSELKSESEAFSSSSYSPSRSDESSSPESDITFLDFSDSQWD-EAENFGLEKYPSVEID 319

Query: 351 WEAI 354
           W AI
Sbjct: 320 WSAI 323

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2135282	272	AT4G39780 [Arabidopsis thalian	0.569	0.753	0.493	1.7e-56
TAIR|locus:2029491	334	RAP2.4 "related to AP2 4" [Ara	0.891	0.961	0.397	7.2e-52
TAIR|locus:2060385	261	AT2G22200 [Arabidopsis thalian	0.572	0.789	0.446	4.6e-42
TAIR|locus:2015061	261	AT1G22190 [Arabidopsis thalian	0.3	0.413	0.632	1.9e-39
TAIR|locus:2034295	314	AT1G36060 [Arabidopsis thalian	0.272	0.312	0.602	4.9e-38
TAIR|locus:2171840	277	AT5G65130 [Arabidopsis thalian	0.516	0.671	0.390	2e-28
TAIR|locus:2014185	335	AT1G64380 [Arabidopsis thalian	0.572	0.614	0.358	9.4e-27
TAIR|locus:2119555	388	AT4G13620 [Arabidopsis thalian	0.313	0.291	0.487	1.8e-23
TAIR|locus:2051359	336	ERF53 "ERF domain 53" [Arabido	0.172	0.184	0.725	2.7e-20
TAIR|locus:2123708	292	AT4G28140 [Arabidopsis thalian	0.219	0.270	0.555	1.6e-17

TAIR|locus:2135282 AT4G39780 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
 Identities = 114/231 (49%), Positives = 141/231 (61%)

Query:   130 LASRASISSPKSNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTR 189
             L  R +I SP    L+PK VPMK+++ AQ     KLYRGVRQRHWGKWVAEIRLPKNRTR
Sbjct:    66 LNQRRNIISPN---LAPKPVPMKNMT-AQ-----KLYRGVRQRHWGKWVAEIRLPKNRTR 116

Query:   190 LWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKL 249
             LWLGTFDT             KLRGEFARLNFP  +H   +  G    + PLH+SVDAKL
Sbjct:   117 LWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGG-SCFNPLHSSVDAKL 175

Query:   250 QAICQNLALNNNVXXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHS 309
             Q ICQ+L    ++              +ET+  L P      + E     S  +   D S
Sbjct:   176 QEICQSLRKTEDIDLPC----------SETE--LFPPKTEYQESEYGFLRSDENSFSDES 223

Query:   310 LSDAGSSSPESDVS-FLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLSE 359
               +  SSSPES ++ FLDF+D+ ++ E+ +FGLEK+PSVEIDW+AI KLSE
Sbjct:   224 HVE--SSSPESGITTFLDFSDSGFD-EIGSFGLEKFPSVEIDWDAISKLSE 271

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2029491 RAP2.4 "related to AP2 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 145/365 (39%), Positives = 186/365 (50%)

Query:     1 MAAAIDMYNSSRSISDPFREELMKALEPFMKIAXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
             MAAA+++Y  SRS  D    ELM AL PF+K                             
Sbjct:     1 MAAAMNLYTCSRSFQDS-GGELMDALVPFIKSVSDSPSSSSAASASAFLHPSAFSLPPLP 59

Query:    61 XXXEANFFYPDGYNLCSPSYDTPMFSQGLMSFEQQPISSLGLNHLTPSXXXXXXXXXXXX 120
                    +YPD   L  P      FS G  S  QQ  S +GLN+L+ S            
Sbjct:    60 G------YYPDSTFLTQP------FSYG--SDLQQTGSLIGLNNLSSSQIHQIQSQIHHP 105

Query:   121 XXXXXXVASLASRASISSPKSNLLSPKAVPMKH--VSNAQVA-------KPTKLYRGVRQ 171
                        +  + ++  SNLLSPK + MK   V+ +  A       KPTKLYRGVRQ
Sbjct:   106 LP--------PTHHNNNNSFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQ 157

Query:   172 RHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHV 231
             RHWGKWVAEIRLP+NRTRLWLGTFDT             KLRG+FARLNFP+L+H+G+H+
Sbjct:   158 RHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHI 217

Query:   232 TGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXXEAETKPVLLPATAANI 291
              G+FG+YKPLH+SVDAKL+AIC+++A                  +   K V  P  +  +
Sbjct:   218 GGDFGEYKPLHSSVDAKLEAICKSMAETQK------QDKSTKSSKKREKKVSSPDLSEKV 271

Query:   292 KVENTSAT-SLSSPTPDHSLSDAGSSSPESDVSFLDFNDT-KWETEMDAFGLEKYPSVEI 349
             K E  S +   S P  +   S AGSS P SD++F D  +  +W    + F LEKYPS EI
Sbjct:   272 KAEENSVSIGGSPPVTEFEESTAGSS-PLSDLTFADPEEPPQWN---ETFSLEKYPSYEI 327

Query:   350 DWEAI 354
             DW++I
Sbjct:   328 DWDSI 332

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IGI

GO:0009611 "response to wounding" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2060385 AT2G22200 [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 100/224 (44%), Positives = 130/224 (58%)

Query:   141 SNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXX 200
             SNL SP  + MK+++ +  +K   LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTF+T   
Sbjct:    48 SNL-SPNRIRMKNLTPS-TSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEK 105

Query:   201 XXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNN 260
                       +LRG+ A+LNFP+L H          D  PL +SVD KLQAIC++L    
Sbjct:   106 AALAYDQAAFQLRGDIAKLNFPNLIHE---------DMNPLPSSVDTKLQAICKSLRKTE 156

Query:   261 NVXXXXXXXXXXXXXEAETKPVL-LPATAANI-KVENTSATSLSSPTP---DHSLSDAGS 315
              +                 K  L LP     + K E+     LS+ +P   + SL D   
Sbjct:   157 EICSVSDQTKEYSVYSVSDKTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQ 216

Query:   316 SS-PESDVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLS 358
             +    SD +FLDF+DT++E E+ +FGL K+PSVEIDW+AI KL+
Sbjct:   217 AEYSSSDKTFLDFSDTEFE-EIGSFGLRKFPSVEIDWDAISKLA 259

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2015061 AT1G22190 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 74/117 (63%), Positives = 84/117 (71%)

Query:   141 SNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXX 200
             S+ LSPK V MK    +  AKPTKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT   
Sbjct:    59 SHHLSPKPVSMKQTGTS-AAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEE 117

Query:   201 XXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLA 257
                       KLRG+FARLNFP L+H+         +Y+PL +SVDAKL+AICQNLA
Sbjct:   118 AALAYDKAAYKLRGDFARLNFPDLRHND--------EYQPLQSSVDAKLEAICQNLA 166

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2034295 AT1G36060 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
 Identities = 59/98 (60%), Positives = 70/98 (71%)

Query:   155 SNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRG 214
             S+  V+KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT             KLRG
Sbjct:   132 SSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRG 191

Query:   215 EFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAI 252
             + ARLNFP L++       + G+Y P+ A+VDAKL+AI
Sbjct:   192 DSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAI 229

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2171840 AT5G65130 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 80/205 (39%), Positives = 104/205 (50%)

Query:   141 SNLLSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXX 200
             S+LL+ K   MK +  A   KP KLYRGVRQR WGKWVAEIRLPKNRTRLWLGTF+T   
Sbjct:    88 SHLLTAKPTSMKKIDVA--TKPVKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQE 145

Query:   201 XXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKP-LHASVDAKLQAICQNLALN 259
                       K+RG+ ARLNFP +   G H       YK  L  S++AK+++IC +  L 
Sbjct:   146 AALAYDQAAHKIRGDNARLNFPDIVRQG-H-------YKQILSPSINAKIESICNSSDLP 197

Query:   260 NNVXXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPE 319
               +                +KP   P      ++     +  SSP  D +L D  S   +
Sbjct:   198 --LPQIEKQNKTEEVLSGFSKPEKEPEFG---EIYGCGYSG-SSPESDITLLDFSSDCVK 251

Query:   320 SDVSFLDFNDTKWET-EMDAFGLEK 343
              D SFL     K+ + E+D   +EK
Sbjct:   252 EDESFL-MGLHKYPSLEIDWDAIEK 275

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2014185 AT1G64380 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 80/223 (35%), Positives = 112/223 (50%)

Query:   145 SPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXX 204
             SP A     ++  +V K  KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+DT       
Sbjct:   115 SPAAAFAAALAAGRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYA 174

Query:   205 XXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHA---SVDAKLQAICQNLALNNN 261
                   KLRGE+ARLNFP+LK   + + G  GD   L A   +VD K+Q+ICQ +     
Sbjct:   175 YDRAAYKLRGEYARLNFPNLKDP-SELLG-LGDSSKLIALKNAVDGKIQSICQRVRKERA 232

Query:   262 VXXXXXXXXXXXXXEAE--TKPVLLPATAANIKVENTSATSLSSP-TPDHSLSDAGSSSP 318
                           ++   + P +L  +++ +    T+ TS  S       L ++ +SSP
Sbjct:   233 KKSVKVSKNSSATADSSCLSSPEIL--SSSPVTTTTTAVTSEDSYWVSPMGLCNSENSSP 290

Query:   319 -----ESDVSFLDFNDTKWETEMDAFGLEKYPSV--EIDWEAI 354
                   S+V      +     + D F L + PS   E+ WE +
Sbjct:   291 VSVSVPSEVPATAEEEAMMGVDTDGFLLARMPSFDPELIWEVL 333

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2119555 AT4G13620 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 59/121 (48%), Positives = 73/121 (60%)

Query:   143 LLSPKAVPMKHVSN--AQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXX 200
             L + K  PMK  +    Q   PTKLYRGVRQRHWGKWVAEIRLP+NRTR+WLGTF+T   
Sbjct:   207 LSTTKTQPMKSKTRKVVQTTTPTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQ 266

Query:   201 XXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASV-DAKLQAICQNLALN 259
                        LRGEFA LNFP LKH       + G  + + AS+ ++K+Q I  +   N
Sbjct:   267 AAMAYDTAAYILRGEFAHLNFPDLKHQL-----KSGSLRCMIASLLESKIQQISSSQVSN 321

Query:   260 N 260
             +
Sbjct:   322 S 322

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2051359 ERF53 "ERF domain 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 45/62 (72%), Positives = 46/62 (74%)

Query:   163 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFP 222
             TKLYRGVRQRHWGKWVAEIR P+NRTRLWLGTFDT             KLRGE ARLNFP
Sbjct:   184 TKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243

Query:   223 HL 224
              L
Sbjct:   244 EL 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:2000070 "regulation of response to water deprivation" evidence=IEP

TAIR|locus:2123708 AT4G28140 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 45/81 (55%), Positives = 49/81 (60%)

Query:   144 LSPKAVPMKHVSNAQVAK--PTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXX 201
             LSP+   M  +S   V     TKLYRGVRQR WGKWVAEIR P++R RLWLGTFDT    
Sbjct:   119 LSPRGRMMMMMSQEAVQPYIATKLYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEA 178

Query:   202 XXXXXXXXXKLRGEFARLNFP 222
                      KLRG  A LNFP
Sbjct:   179 AMAYDRQAFKLRGHSATLNFP 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1E4	RAP24_ARATH	No assigned EC number	0.4761	0.9138	0.9850	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-36
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	5e-34
pfam00847	53	pfam00847, AP2, AP2 domain	5e-17

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  125 bits (315), Expect = 4e-36
 Identities = 44/63 (69%), Positives = 49/63 (77%)

Query: 166 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLK 225
           YRGVRQR WGKWVAEIR P    R+WLGTFDTAEEAA AYD+AA+K RG  ARLNFP+  
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL 61

Query: 226 HHG 228
           +  
Sbjct: 62  YDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  119 bits (301), Expect = 5e-34
 Identities = 44/61 (72%), Positives = 46/61 (75%)

Query: 164 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPH 223
             YRGVRQR WGKWVAEIR P    R+WLGTFDTAEEAA AYD+AA KLRG  A LNFP 
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 224 L 224
            
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 73.8 bits (182), Expect = 5e-17
 Identities = 29/52 (55%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 166 YRGVRQRH-WGKWVAEIRLPKNR--TRLWLGTFDTAEEAALAYDQAAYKLRG 214
           Y+GVR    WG+WVAEIR P  +   R  LGTF T EEAA A   A  KLRG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.8
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.79
PHA00280	121	putative NHN endonuclease	99.55
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.12

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.80  E-value=9.7e-20  Score=137.36  Aligned_cols=60  Identities=73%  Similarity=1.177  Sum_probs=56.5

Q ss_pred             CCceeeEECCCCcEEEEEeccCCCeEeecCCCCCHHHHHHHHHHHHHHHhCCCccCCCCC
Q 018103          164 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPH  223 (360)
Q Consensus       164 S~YRGVr~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~kl~G~~A~lNFP~  223 (360)
                      |+||||+++++|||+|+|+++..|+++|||+|+|+||||+|||+|+++++|.++++|||.
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~   60 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD   60 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCC
Confidence            689999888889999999995559999999999999999999999999999999999996

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.79  E-value=2.7e-19  Score=136.64  Aligned_cols=62  Identities=71%  Similarity=1.161  Sum_probs=58.6

Q ss_pred             CceeeEECCCCcEEEEEeccCCCeEeecCCCCCHHHHHHHHHHHHHHHhCCCccCCCCCCCC
Q 018103          165 LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHLKH  226 (360)
Q Consensus       165 ~YRGVr~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~kl~G~~A~lNFP~~~~  226 (360)
                      +|+||+++++|||+|+|+++.+|+++|||+|+|+||||+|||.|+++++|.++++|||...+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999888899999999999999999999999999999999999999999999999997654

>PHA00280 putative NHN endonuclease

Probab=99.55  E-value=8.7e-15  Score=126.28  Aligned_cols=72  Identities=18%  Similarity=0.243  Sum_probs=64.0

Q ss_pred             CCCCCCcCCcCCCCCCCCCCCCCceee-EECCCCcEEEEEeccCCCeEeecCCCCCHHHHHHHHHHHHHHHhCCCccC
Q 018103          143 LLSPKAVPMKHVSNAQVAKPTKLYRGV-RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARL  219 (360)
Q Consensus       143 ~l~~r~~pmK~~~~~~~~~~tS~YRGV-r~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~kl~G~~A~l  219 (360)
                      -+.++.++++++...  +.++|+|+|| +++..|||+|+|++  +||+++||.|+++|+|+.||+ ++.+|||+||+.
T Consensus        48 r~~T~~eN~~N~~~~--~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         48 RLALPKENSWNMKTP--KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             hhcCHHHHhcccCCC--CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            356777888888776  8899999999 68888999999998  999999999999999999997 778999999853

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.12  E-value=1.4e-10  Score=85.41  Aligned_cols=52  Identities=40%  Similarity=0.606  Sum_probs=45.5

Q ss_pred             CCceee-EECCCCcEEEEEeccC-C--CeEeecCCCCCHHHHHHHHHHHHHHHhCC
Q 018103          164 KLYRGV-RQRHWGKWVAEIRLPK-N--RTRLWLGTFDTAEEAALAYDQAAYKLRGE  215 (360)
Q Consensus       164 S~YRGV-r~r~~GKW~AeIr~p~-~--gkri~LGtFdTaEEAA~AYD~AA~kl~G~  215 (360)
                      |+|+|| +++..++|+|.|+++. +  +++++||.|++++||++||++++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999 5777899999999842 2  49999999999999999999999999885

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-10
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-10

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 164 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFP 222
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+T             ++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 164 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFP 222
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+T             ++RG  A LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
1gcc_A	63	Ethylene responsive element binding factor 1; tran	8e-39

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  131 bits (332), Expect = 8e-39
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 1/61 (1%)

Query: 164 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFP 222
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+TAE+AALAYD+AA+++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 223 H 223
            
Sbjct: 61  L 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.89
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.67

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.89  E-value=8.1e-24  Score=161.78  Aligned_cols=61  Identities=67%  Similarity=1.124  Sum_probs=57.1

Q ss_pred             CCceeeEECCCCcEEEEEeccC-CCeEeecCCCCCHHHHHHHHHHHHHHHhCCCccCCCCCC
Q 018103          164 KLYRGVRQRHWGKWVAEIRLPK-NRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHL  224 (360)
Q Consensus       164 S~YRGVr~r~~GKW~AeIr~p~-~gkri~LGtFdTaEEAA~AYD~AA~kl~G~~A~lNFP~~  224 (360)
                      .+||||++++||||+|+|++|. +|+++|||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            3699998888999999999986 589999999999999999999999999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.67  E-value=0.21  Score=39.66  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=22.9

Q ss_pred             CCCCCceee-EECCCCcEEEEEeccCCCeEe
Q 018103          161 KPTKLYRGV-RQRHWGKWVAEIRLPKNRTRL  190 (360)
Q Consensus       161 ~~tS~YRGV-r~r~~GKW~AeIr~p~~gkri  190 (360)
                      ...|+|.|| +..+.+.|+|.-..  +|+|.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            457999999 78889999999887  66554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-34

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  119 bits (299), Expect = 2e-34
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 1/61 (1%)

Query: 164 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFP 222
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+TAE+AALAYD+AA+++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 223 H 223
            
Sbjct: 61  L 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.88

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=8.8e-24  Score=160.36  Aligned_cols=59  Identities=69%  Similarity=1.177  Sum_probs=55.5

Q ss_pred             CceeeEECCCCcEEEEEecc-CCCeEeecCCCCCHHHHHHHHHHHHHHHhCCCccCCCCC
Q 018103          165 LYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPH  223 (360)
Q Consensus       165 ~YRGVr~r~~GKW~AeIr~p-~~gkri~LGtFdTaEEAA~AYD~AA~kl~G~~A~lNFP~  223 (360)
                      .||||+++++|||+|+|++| .+++++|||+|+|+||||+|||+|+++++|.++.+|||.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            59999888899999999986 467999999999999999999999999999999999995