Citrus Sinensis ID: 018106

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTLIGTSN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccEEEEEcEEEcccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEcccccEEEEEccccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEccccccEEEEccccccEEEEEEEcccccHHHHHHHccccccEEEEEccEEcccEEEEccccccEEEEEccccccEEEcccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEccccccEEccccEEEcccEEEEEEEEEEccccccccccHHHEEEEEEEEEccHHHHHHHHHcccHHHHEEEEEcccccEEEEEEcccEEEEEEEEccccccEEEEEcccEEEEEEEccccccccEEEEEcccccEEEEEEEEcccccccccccHcHHHHHHHHHHHccccEEEEEccccEEEEEEcccccccccccccHHHHHHHccc
Coil and Loop (DISEMBL)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVsfpildfdqnyffpgasrldygsfcvrkqnysFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFldvkgsapiVDRWIRLAVENGvreldfenitdentvytlpqaifSANSVTNLRLVWCRleqpfdsimlcsLKKLTLERVCLDEQMVQKLAsecplledlcfsncwglkhlCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLfygarrprvvevarsphlkkldlVSVYFADNEfnhliskfpsledlfvtrcclpgkikisSNQLKNLLFRSCKYLKSALCVKVFSTLIGTSN
Flexible Loop (DISEMBL)
mniltelkimdETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEvarsphlkklDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTLIGTSN
Low Complexity Region (SEG)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKimeirsfseeieiveisVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTLIGTSN
Disordered region (IsUnstruct)
***LTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTLI****
Disordered Region (DISOPRED)
*********************ELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTLIG***
Disordered Region (DISEMBL)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTLIGTSN
Disordered Region (DISPRO)
***************AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP*******GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTLIGTSN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTLIGTSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q9FJ30	540	Putative F-box/LRR-repeat	yes	no	0.605	0.403	0.296	1e-18
Q9LX48	491	Putative F-box/LRR-repeat	no	no	0.594	0.435	0.337	2e-16
Q8H1M0	442	F-box/FBD/LRR-repeat prot	no	no	0.691	0.563	0.280	8e-16
Q9LXR6	457	Putative F-box protein At	no	no	0.661	0.520	0.318	1e-15
Q9LX47	504	Putative F-box/FBD/LRR-re	no	no	0.547	0.390	0.318	2e-15
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.569	0.394	0.321	2e-15
Q9LXJ6	456	F-box/FBD/LRR-repeat prot	no	no	0.566	0.447	0.307	5e-15
Q9FNI8	466	FBD-associated F-box prot	no	no	0.505	0.390	0.290	6e-15
Q6DR13	443	F-box/LRR-repeat protein	no	no	0.625	0.507	0.334	9e-15
Q8LF09	453	F-box/FBD/LRR-repeat prot	no	no	0.577	0.459	0.298	1e-14

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 45/263 (17%)

Query: 15  VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN-YFFPGASR 73
           V+ DRIS LP  +I H++S+L  KE A T+VL+K+W  L    P L+FD + YF P A R
Sbjct: 11  VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARR 70

Query: 74  LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
             Y            S++ + FM FVD+ L    K K  +++F +     DV   + +++
Sbjct: 71  NKY------------SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVLE 116

Query: 134 RWIRLAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRL-----VWCRLEQ 183
            WI   ++ GV ++D       N  + ++ Y+LP  IF + ++  L++     V   +E 
Sbjct: 117 -WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE- 174

Query: 184 PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 243
               + L  LK L L+   ++  M+ KL S C  LE+L  +N                +M
Sbjct: 175 --GGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLAN----------------LM 216

Query: 244 EIRSFSEEIEIVEISVPSLQQLT 266
              S  +E   V +S+P+L++L 
Sbjct: 217 WADSSEDEACHVSVSIPTLKRLN 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX48|FBL66_ARATH Putative F-box/LRR-repeat protein At3g59230 OS=Arabidopsis thaliana GN=At3g59230 PE=4 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 111/243 (45%), Gaps = 29/243 (11%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           D I+ LP  +I+H++S+LS KE A TS+LS+KW   +   P LDFD     P   + D G
Sbjct: 12  DIINSLPEALIYHILSFLSTKEAAITSLLSRKWRYFFAFVPNLDFDD----PVRMQPDMG 67

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
                  N   +E    FMDFVD  L    +    + KF L      V G    V RWI 
Sbjct: 68  -------NQEETEIHTSFMDFVDRVLA--LRGNSHVNKFSLKCGN-GVDGVG--VTRWIL 115

Query: 138 LAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLR------LVWCRLEQPFDSIMLC 191
             +E  V ELD    +D  T Y  P  +F + S+  LR      L +  L      + L 
Sbjct: 116 NTLELSVSELDLSIASD--TTYLFPSKVFVSKSLVRLRIEARNGLAFGSLVIDVGDVSLP 173

Query: 192 SLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSN-CWGLKHLCVSKASKLKIMEIRSF 248
            LK L L+ V LD Q++   KL S C +LE+L   +  W     C +    LK   +  F
Sbjct: 174 KLKTLYLDSVELDYQIICLAKLLSGCHVLEELVMIDVVWNFWESCSASIPTLK--RLTFF 231

Query: 249 SEE 251
           +EE
Sbjct: 232 TEE 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1M0|FDL16_ARATH F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 47/296 (15%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           DRI ELP  ++  ++SYL   +  +TSVLSK+W  L++  P+LD   +  FP     +Y 
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSD-FPDE---NYA 59

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
           SF            +  F++F   S +R  KLK+   ++    T+ D + +      W+ 
Sbjct: 60  SF------------IDNFLEFNRKSRMRKFKLKY--DEY----TYDDDRLAG-----WVV 96

Query: 138 LAVENGVRELDFENITDENTVYT-LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
             V+ G++ LD +       V   +PQ I+  N++ +L LV   +E P   + L SLK +
Sbjct: 97  TTVDRGIQHLDAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIM 156

Query: 197 TLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEI 254
            LE V    D  +++K+ S CP+LED          +L V +  +++ + +RSF    E 
Sbjct: 157 HLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEY 216

Query: 255 --------VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFN 302
                   VEI  P L+ L    +   +   + V     L  +D+      D+EFN
Sbjct: 217 SVSCTYFSVEIDAPRLEYLN---FNDDQSDTIVVKNMTSLSMIDI------DSEFN 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 125/273 (45%), Gaps = 35/273 (12%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASRLD 75
           MD  S+LP  +I H++S L  KE A TSVL+KKW  L+   P LDF D ++  P   + +
Sbjct: 6   MDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKRE 65

Query: 76  YGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GSAPI-VD 133
                           ++ FMDFVD  L    +    I+KF      L+VK G  P  VD
Sbjct: 66  KDGI------------LRSFMDFVDRVLA--LQGASPIKKFS-----LNVKTGVDPDRVD 106

Query: 134 RWIRLAVENGVREL----DFENITDENTVYTLPQAIFSANSVTNLRLVW-CRLEQPFDSI 188
           RWI   ++ GV  L    DFE        Y+LP  I  + ++  L+  +   L    D +
Sbjct: 107 RWICNVLQRGVSHLALFMDFEE------EYSLPYEISVSKTLVELKTGYGVDLYLWDDDM 160

Query: 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRS 247
            L  LK L LE V       Q L   CP+LE+L   N  W  +++ +S +S LK ++I S
Sbjct: 161 FLPMLKTLVLESVEFGRGQFQTLLPACPVLEELMLLNMEWKDRNVILS-SSSLKNLKITS 219

Query: 248 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEV 280
               +  +    P+L  L    Y A    +V +
Sbjct: 220 EDGCLGTLSFDTPNLVFLDYYDYVAEDYPIVNL 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX47|FDL46_ARATH Putative F-box/FBD/LRR-repeat protein At3g59240 OS=Arabidopsis thaliana GN=At3g59240 PE=4 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 48/245 (19%)

Query: 10  MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP 69
           MD+ +   D IS+LP  +I HL+S++  KE A TS+LS+KW  L+   PILDFD + +  
Sbjct: 1   MDD-ICCKDIISDLPEALICHLLSFVPTKEAALTSLLSEKWRYLFAFAPILDFDDSVWM- 58

Query: 70  GASRLDYGSFCVRKQNYSFSETVKKFMDFVD--------ASLVRFC-KLKFCIQKFRLFL 120
             S L Y            +E  +KFMDFVD        ++LVRF    +  I +  +F 
Sbjct: 59  -QSPLVY-----------MNEVHRKFMDFVDRVLGLQGNSTLVRFSLNCRNGIDRECIF- 105

Query: 121 TFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR 180
                        RWI   +E GV +LD       N   ++P ++F + S+  LR+   R
Sbjct: 106 -------------RWISNVIERGVSDLDLGGNFVSNR--SMPSSVFVSKSLVKLRI---R 147

Query: 181 LEQ----PFDSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCV 234
            E       + + L  LK L L  +     +  + KL S C +LEDL  S+ W   +   
Sbjct: 148 TENCTIIDLEDVFLPKLKTLDLSSIWFRDGDTCLLKLISGCQVLEDLTMSDLWWDGYWNR 207

Query: 235 SKASK 239
           S +SK
Sbjct: 208 SMSSK 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 104/233 (44%), Gaps = 28/233 (12%)

Query: 15  VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRL 74
           V+ DRIS LP  ++ H++S+L  KE A TSVLSKKW  L+     LDFD + +  G  + 
Sbjct: 4   VSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKS 63

Query: 75  DYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR 134
           D              E  + FM+FVD  L    +    + KF L  +  DV  +   V  
Sbjct: 64  DV-------------ELSRSFMEFVDRVLA--LQGNGSVNKFSLECSNYDVDLAR--VTG 106

Query: 135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR---LEQPFDSIMLC 191
           WI   +  GV ELD   +      Y LP  IF + ++  L+L       L      + L 
Sbjct: 107 WILNVLGRGVSELDLSILE-----YPLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLP 161

Query: 192 SLKKLTLERVCLDEQMVQ--KLASECPLLEDLCFSN-CWGLKHLCVSKASKLK 241
            LK L ++ V + E+     KL S CP+LE+L   N  W     C      LK
Sbjct: 162 KLKTLYIDCVDVQERGFGFVKLLSGCPVLEELVLMNIGWENWKFCSVSVKTLK 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidopsis thaliana GN=At3g52680 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 118/260 (45%), Gaps = 56/260 (21%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 73
           V+  DRISELP  ++  ++S L    V  TSVLSK+W  L+   P L+FD +        
Sbjct: 17  VMGKDRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSD-------- 68

Query: 74  LDYGSFCVRKQNYSFSETV-KKFMDFVDASLVRFCKLKFCIQKFRL-FLTFLDVKGSAPI 131
            DY S     ++Y+FSE V K F+      L          + FRL F+ F  V      
Sbjct: 69  -DYES-----EHYTFSEIVCKSFLSHKAPVL----------ESFRLKFVNFNPVD----- 107

Query: 132 VDRWIRLAVENGVRELDFENITDE---NTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSI 188
           +  W+ +A    +REL  +    E      +T P ++ + N++  L+LV C L      +
Sbjct: 108 IGLWVGIAFSRHLRELVLDFYPAELGKGVTFTFPSSLCTCNTLETLKLVLCILVDIPSPV 167

Query: 189 MLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 247
           ++ SL+ L LE V   DE  V+ L S CP LE+L                        R 
Sbjct: 168 LMKSLRTLHLEFVRYKDESSVRNLLSGCPGLEELRL---------------------YRG 206

Query: 248 FSEEIEIVEISVPSLQQLTL 267
              +I++  I VPSLQ+LT+
Sbjct: 207 DDSDIKVFTIEVPSLQRLTI 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 28/210 (13%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 73
           +   D IS+LP  +I  ++ YL  K++ RTS LS +W  L++  P LD D   F      
Sbjct: 24  MAGEDLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEF------ 77

Query: 74  LDYGSFCVRKQNY-SFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIV 132
                     Q+Y +F   + KF+DF           K C+ K +  L+        P V
Sbjct: 78  ----------QDYNAFVGFMNKFIDFSGEE-------KICLDKLK--LSSRKTVNDLPCV 118

Query: 133 DRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCS 192
            RWI   V   ++ LD E + +   +  +P +++  +++ NLRL    L + F+++ L  
Sbjct: 119 TRWIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGK-FEAVSLPC 177

Query: 193 LKKLTLER-VCLDEQMVQKLASECPLLEDL 221
           LK + LE  V  ++ +++ L S CP+L+DL
Sbjct: 178 LKTMRLEENVYANDVVLESLISSCPVLKDL 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DR13|FBL38_ARATH F-box/LRR-repeat protein At2g42720 OS=Arabidopsis thaliana GN=At2g42720 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 124/260 (47%), Gaps = 35/260 (13%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MDRIS LP  I+ H++S+LS KE A TS LS +W  ++V  P L             LDY
Sbjct: 1   MDRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSL------------HLDY 48

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFC-KLKFCIQKFRLFLTFLDVKG--SAPIVD 133
                 +Q+    E  ++F+DFVD     F  K    I+K  L +   D +   +   V 
Sbjct: 49  A-----RQH----ENPREFIDFVDFVNTLFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQ 99

Query: 134 RWI-RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWC-RLEQPFDSIMLC 191
            WI R+    GV +LD   IT +     +P  IF +N++  LRL     ++   +++ L 
Sbjct: 100 SWIHRVLSRGGVTDLDL-FITFKGKFQLVPLLIFKSNTLVKLRLGRGFTIKLCHENVYLP 158

Query: 192 SLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKAS-KLKIMEIRS 247
            LK L L+ V    D  + + L   CPLLE+L   +  W  K  C S +S  LK + IR 
Sbjct: 159 MLKTLCLDTVDFDGDHNVFETLLPRCPLLEELVLEDQRW--KQWCGSVSSPSLKRLRIRF 216

Query: 248 FSEEIEIVEISVPSLQQLTL 267
           F   I I+ + VP L  L L
Sbjct: 217 F--HIPIISLDVPGLVYLEL 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160 OS=Arabidopsis thaliana GN=At4g00160 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 50/258 (19%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 73
           V+  DRISELP  ++  ++S+L  K V  TSV SK+W  L+   P L+FD          
Sbjct: 12  VMGKDRISELPDALLIKILSFLPTKIVVATSVFSKQWRPLWKLVPNLEFDSE-------- 63

Query: 74  LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI-V 132
            DY      K+ Y+FSE V K      A ++   +L+F  +K              P+ +
Sbjct: 64  -DYDD----KEQYTFSEIVCKSFLSHKAPVLESFRLEFESEKV------------DPVDI 106

Query: 133 DRWIRLAVENGVRELDF-ENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLC 191
             W+ +A    +REL      T   T +  P ++ + N++  LRLV   L      +++ 
Sbjct: 107 GLWVGIAFSRHLRELVLVAADTGTGTAFKFPSSLCTCNTLETLRLVLLILVDISSPVVMK 166

Query: 192 SLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSE 250
           SL+ L LE V   DE  ++ L S CP+LE+L                     + IR    
Sbjct: 167 SLRTLHLELVSYKDESSIRNLLSGCPILEEL---------------------LVIRGEDS 205

Query: 251 EIEIVEIS-VPSLQQLTL 267
           +IE+  I  VPSL++LT+
Sbjct: 206 DIEVFTIDEVPSLKRLTI 223

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
224121624	528	predicted protein [Populus trichocarpa]	0.886	0.604	0.380	2e-49
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.838	0.643	0.326	9e-38
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.838	0.643	0.326	1e-37
255590973	337	conserved hypothetical protein [Ricinus	0.736	0.786	0.366	2e-36
356557323	833	PREDICTED: uncharacterized protein LOC10	0.855	0.369	0.337	5e-33
449458245	575	PREDICTED: uncharacterized protein LOC10	0.863	0.540	0.336	4e-32
449476919	575	PREDICTED: uncharacterized protein LOC10	0.863	0.540	0.333	6e-32
224119688	563	f-box family protein [Populus trichocarp	0.85	0.543	0.335	2e-30
357454743	761	Agglutinin alpha chain [Medicago truncat	0.880	0.416	0.339	5e-30
357503353	557	F-box/LRR-repeat protein [Medicago trunc	0.869	0.561	0.328	1e-29

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 188/331 (56%), Gaps = 12/331 (3%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD IS  P  ++HH++S+L  K+V RTS+LSK+W  +  ++PILDF        +S   Y
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                   +  + + + KFM++VD S+ RFCK KF +QKF+LFL   D++ S+ + D+W+
Sbjct: 61  S----ENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELSSHL-DKWV 115

Query: 137 RLAVENGVRELDF----ENITDENTVYTLPQAIFSANSVTNLRLVWC--RLEQPFDSIML 190
           +  +ENG +E+DF             Y++P AIF+A SVT L+L  C  +LE+ F  I L
Sbjct: 116 QKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESF-CIKL 174

Query: 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSE 250
            SL+KL L+ V +D+ +++++ + CPLLED+    CWGLK + V +  +LK  EI S   
Sbjct: 175 HSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLS 234

Query: 251 EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 310
           + E VEI  PSL+     F       +V V     LK L L   +  +     L+ KF  
Sbjct: 235 KPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQDLVPKFHV 294

Query: 311 LEDLFVTRCCLPGKIKISSNQLKNLLFRSCK 341
           LE L V  C +  K+KISS +LK+L   SC+
Sbjct: 295 LESLRVGDCPVLKKVKISSWRLKSLEIHSCE 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 181/325 (55%), Gaps = 23/325 (7%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD ISELP  I+ H++S+LS K++ +T++LSK+W  L+++FP  +FD+N FF   S+L  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKN-FFHIESKL-- 57

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                  QN  F       ++FV+ +L +   LK C++KF+L   F +   S  +VDRWI
Sbjct: 58  -------QNKRF-----HLINFVEQTLKQ---LK-CLRKFKLHTDFPE-PNSMVVVDRWI 100

Query: 137 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
              +E+GV+EL+     +    Y LPQ +F+  S+T L +  C+L    D   L S+K +
Sbjct: 101 DYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSV 160

Query: 197 TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE 256
           +L  V  +++ V++L S CP ++ +   +C GL++L + + ++L  ME+++ S    + E
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNS---GLYE 217

Query: 257 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316
               ++      F G  +P  + ++   +LK L L  V   D+ FN   S+FP LE L +
Sbjct: 218 FGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL 277

Query: 317 TRCCLPGKIKISSNQLKNLLFRSCK 341
           + C +   ++ISS+ LK  +   C+
Sbjct: 278 SYCHMLESLRISSSHLKKFILCGCE 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 180/325 (55%), Gaps = 23/325 (7%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD ISELP  I+ H++S+LS K++ +T++LSK+W  L+++FP  +FD+N FF   S+L  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKN-FFHIESKL-- 57

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                  QN  F       ++FV+ +L +   LK C++KF+L   F +   S  +VDRWI
Sbjct: 58  -------QNKRF-----HLINFVEQTLKQ---LK-CLRKFKLHTDFPE-PNSMVVVDRWI 100

Query: 137 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
              +E+GV+EL+     +    Y LPQ +F+  S+T L +  C+L    D   L S+K +
Sbjct: 101 DYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSV 160

Query: 197 TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE 256
           +L  V  +++ V++L S CP ++ +   +C GL+ L + + ++L  ME+++ S    + E
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNS---GLYE 217

Query: 257 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316
               ++      F G  +P  + ++   +LK L L  V   D+ FN   S+FP LE L +
Sbjct: 218 FGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL 277

Query: 317 TRCCLPGKIKISSNQLKNLLFRSCK 341
           + C +   ++ISS+ LK  +   C+
Sbjct: 278 SYCHMLESLRISSSHLKKFILCGCE 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590973|ref|XP_002535407.1| conserved hypothetical protein [Ricinus communis] gi|223523200|gb|EEF26976.1| conserved hypothetical protein [Ricinus communis]

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/273 (36%), Positives = 160/273 (58%), Gaps = 8/273 (2%)

Query: 6   ELKIMDETVVAMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVSFPILDFDQ 64
           ELK MD    ++D IS+LP  +IHH++S L   K+ ARTS+LSK+W  ++ S+ ILDFDQ
Sbjct: 58  ELKAMDRRSDSIDLISQLPNHVIHHILSLLRCKKDAARTSILSKRWRAIWASYLILDFDQ 117

Query: 65  NYFFPGASRLDY-GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFL 123
             F     ++    S   +++    ++  + F  FV+ +L    +    IQKF+L LT  
Sbjct: 118 RKFQKQEKKVRRLSSKSKKRKEVEINKKNEMFRAFVENTLRTHIEQDSGIQKFKLHLTSY 177

Query: 124 DVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 183
           +V+ SA  VD+WI  A  N +++LD    + ++  Y LPQ +F+A+++T LR+  C+L  
Sbjct: 178 NVELSAH-VDQWIGFATTNNIKDLDLYIPSKKDRCYNLPQTVFAASTITALRISGCKLRT 236

Query: 184 PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 243
             D I L +L+KL   ++ +D QM+Q L   CPL++DL    C GLK L +S ++KL  +
Sbjct: 237 CID-IKLSNLQKLCFAKLRVDGQMIQNLMLSCPLIDDLRLIYCTGLKTLLLS-SNKLYRV 294

Query: 244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR 276
           +I  F   ++ VE+  P+LQ  T  ++G +  R
Sbjct: 295 DIH-FCHGLKNVEVLSPNLQ--TFWYHGKKSTR 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 175/335 (52%), Gaps = 27/335 (8%)

Query: 16  AMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRL 74
           ++DRIS+ P  +IHH++S+L +  +  RTSVLSK+W +L+ S+ +L FD+  F   A+++
Sbjct: 158 SVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKF---AAKI 214

Query: 75  DYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR 134
            +            S     F D+V  SL+        I+K  L +T  D+   AP ++ 
Sbjct: 215 GH---------EDSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLEL 265

Query: 135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLK 194
           W+ +A+   ++ELD          YTLPQ +FS+ ++T +RL  C+L    ++I L  L+
Sbjct: 266 WLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGT-CNNIKLPYLQ 324

Query: 195 KLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEI 254
           KL L ++ L E  +Q L S C  +EDL    C GLKHL VS   +LK  EI     +++ 
Sbjct: 325 KLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIH-HCIQLKK 383

Query: 255 VEISVPSLQQLTLLFYGAR-RPRVVEVARSPHLKKLDL----VSVYFADNEFNHLISKFP 309
           VEIS P+L   T  + G +  P  V +     LK+L L    V+  F +N+F    S FP
Sbjct: 384 VEISAPNLD--TFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQF----SNFP 437

Query: 310 SLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCKYL 343
            LE L ++      + I IS+  L+    + CK L
Sbjct: 438 LLEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKL 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 177/342 (51%), Gaps = 31/342 (9%)

Query: 9   IMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
           +  E V  +D IS+LP   IHH++S+L SAKE ARTS+LSKKW   + SF +L F++  +
Sbjct: 45  VEQEVVEPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSY 104

Query: 68  FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
                 L+       KQ        +KF+D +D SL         I K  L +T   V  
Sbjct: 105 LKAEVGLNSD-----KQR-------QKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSH 152

Query: 128 SAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRL---VWCRLEQP 184
               + RW+ +A ENG+ ELD  ++        +P  + S  +++ LRL    W      
Sbjct: 153 ----LKRWVDMAGENGLGELDI-HVETTRKRCKVPLCMHSIKTLSGLRLQGLYW----SS 203

Query: 185 FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244
           F+++   +L+KL L R+ +D Q++QKL S CPLL DL    C GL +L +S + KL+ ++
Sbjct: 204 FEALEFNNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVD 263

Query: 245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADNEFN 302
           +      +  VE+ VPSL+     +Y A++     + +     LK+L L      +N FN
Sbjct: 264 LYQ-CHFLRRVELQVPSLKT---FWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFN 319

Query: 303 HLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 344
            L+  FP LE L ++RC     I I++ +L++L  R CK LK
Sbjct: 320 KLLVSFPVLEKLNLSRCDKLQIIGIANVELQSLGLRCCKRLK 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus]

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 177/342 (51%), Gaps = 31/342 (9%)

Query: 9   IMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
           +  E V  +D IS+LP   IHH++S+L SAKE ARTS+LSKKW   + SF +L F++  +
Sbjct: 45  VEQEVVEPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSY 104

Query: 68  FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
                 L+       KQ        +KF+D +D SL         I K  L +T   V  
Sbjct: 105 LKAEVGLNSD-----KQR-------QKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSH 152

Query: 128 SAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRL---VWCRLEQP 184
               + RW+ +A ENG+ ELD  ++        +P  + S  +++ LRL    W      
Sbjct: 153 ----LKRWVDMAGENGLGELDI-HVETTRKRCKVPLCMHSIKTLSGLRLQGLYW----SS 203

Query: 185 FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244
           F+++   +L+KL L R+ +D Q++QKL S CPLL DL    C GL +L +S + KL+ ++
Sbjct: 204 FEALEFNNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVD 263

Query: 245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADNEFN 302
           +      +  +E+ VPSL+     +Y A++     + +     LK+L L      +N FN
Sbjct: 264 LYQ-CHFLRRIELQVPSLKT---FWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFN 319

Query: 303 HLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 344
            L+  FP LE L ++RC     I I++ +L++L  R CK LK
Sbjct: 320 KLLVSFPVLEKLNLSRCDKLQIIGIANVELQSLGLRCCKRLK 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 172/337 (51%), Gaps = 31/337 (9%)

Query: 10  MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP 69
           M   V A DRIS LP  ++H+++SYLS + V R SVLSK W+++  SFP+ DF ++    
Sbjct: 27  MGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVLLL 86

Query: 70  GASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSA 129
           G             + Y   +   KF+DFV  SL+          KFRL    +D+    
Sbjct: 87  G-------------KRYEIQDWKNKFIDFVQDSLLAQHHHNTRSHKFRL---SMDLDSYD 130

Query: 130 PIV----DRWIRLAVENGVRELD--FENITDENTVYTLPQAIFSANSVTNLRLVW-CRLE 182
           P +    D  + LA + GV E D  F+NI+     Y LP+A+ SA  +T LRL    +L 
Sbjct: 131 PQLTSRADHLLELATKCGVYEFDLNFQNISH----YCLPRALLSAEEITVLRLNGNYKLS 186

Query: 183 QPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKI 242
            P D+I   SL+ L+L  V +DE ++Q L   CPL+E L    C+G+K + +S   KLK 
Sbjct: 187 LPRDAINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKE 246

Query: 243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVA--RSPHLKKLDLVSVYFADNE 300
           +E+      +E +EI VPSL+         +    +++   R+  L KL   ++     +
Sbjct: 247 VEVNEGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQ 306

Query: 301 -FNHLISKFPSLEDLFVT-RCCLPGKIKISSNQLKNL 335
            F  LI++FP+L+ L +        +IKIS+ QL+ L
Sbjct: 307 VFQDLIAQFPALKVLALNCYATSVSRIKISNPQLEKL 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 181/351 (51%), Gaps = 34/351 (9%)

Query: 2   NILTELKIMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPIL 60
           +++  ++ M + V ++DRIS+LP  +I+H++S+L + ++  RT  LSK+W  L+ S+  L
Sbjct: 26  SVVENVEQMIQIVESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAAL 85

Query: 61  DFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFL 120
            F +  F  G    D GS    K+N         F   V  SL  +      IQK  L +
Sbjct: 86  IFYEQKFAAGIGPED-GS---NKENL--------FRQHVADSLHTYLANNLQIQKLLLHM 133

Query: 121 TFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR 180
              D+   AP+VD W+  AV   ++E+D +    +   YTLP+ + S+ ++T LRL  C 
Sbjct: 134 MSFDLT-DAPLVDSWLTSAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCI 192

Query: 181 LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKL 240
           L +   +IML  L+KL L +V L EQ+V  L S CP +EDL F  C GLK L +     L
Sbjct: 193 LRR-CGNIMLPRLQKLYLRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYI-HCDSL 250

Query: 241 KIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDL----VSVY 295
             +EI +   +++   I  P+L   T  F G +  P  V +     LKKL L    VS  
Sbjct: 251 SRLEIHN-CNQLKTAYIFAPNLD--TFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRD 307

Query: 296 FADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYL 343
           F +N+FN    KFP LE L +   C+  K+K   I +  L+ ++ + CK L
Sbjct: 308 FCENQFN----KFPLLEKLDL---CIADKMKSITIFNRCLQRIVLKGCKKL 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503353|ref|XP_003621965.1| F-box/LRR-repeat protein [Medicago truncatula] gi|357503387|ref|XP_003621982.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496980|gb|AES78183.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496997|gb|AES78200.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 163/350 (46%), Gaps = 37/350 (10%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           DR+S LP  I+HH++S L  K+ ARTSVLSK W   + +FPIL    N F         G
Sbjct: 19  DRLSILPKIILHHILSRLPEKDAARTSVLSKAWADTWFTFPILSISDNKF--------TG 70

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
            F +   +       KKF+D+V  +L RFC     I++ ++ L   ++   +  VD W++
Sbjct: 71  WFPLSIDD--VKRKRKKFIDYVTRTLSRFCDQGLAIKECKIILNRFELHYMSKHVDLWLK 128

Query: 138 LAVENGVRELDF-----ENITDE--NTVYTLPQAIFSANSVTNLRL-VWCRLEQPF--DS 187
            A  +GV  ++       N  +E     Y LP  +  A S+T + L    R++Q F   S
Sbjct: 129 SASGSGVEVVELCLPCGPNYIEEGHGKCYVLPTGVIEAKSLTKVVLKGGIRVDQAFMNQS 188

Query: 188 IMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---------KHLCVSKA 237
           I   SL+ L+L  V L DE  ++ L S CP +E +   +C  L         K L +   
Sbjct: 189 IKFFSLRVLSLWIVLLEDEHAIEHLISCCPFIEHITLKHCSVLSPGGGVKLMKSLSMHGL 248

Query: 238 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV--- 294
            KLK +++    E    V I VPSL+ L         P  +      +LK LDL S+   
Sbjct: 249 PKLKTVDVHGIQE----VYIDVPSLEYLYYCHDVLNAPYKIHFDSCRNLKGLDLFSLEGN 304

Query: 295 YFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 344
              D  F  L SKFP LE L   +C +   I ISS QLK L    C  +K
Sbjct: 305 TITDKWFLELFSKFPFLERLKFVKCTMSETINISSVQLKVLELSGCHNMK 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2152950	540	AT5G41840 [Arabidopsis thalian	0.547	0.364	0.309	2.7e-17
TAIR|locus:2085013	532	AT3G42770 "AT3G42770" [Arabido	0.505	0.342	0.325	5.6e-14
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.241	0.194	0.370	6.9e-14
TAIR|locus:2160205	472	AT5G54820 [Arabidopsis thalian	0.575	0.438	0.258	1.7e-13
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.138	0.111	0.5	2.4e-13
TAIR|locus:2126096	507	AT4G00320 "AT4G00320" [Arabido	0.538	0.382	0.301	2.4e-13
TAIR|locus:2081247	464	AT3G59160 "AT3G59160" [Arabido	0.597	0.463	0.317	4.3e-13
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.375	0.296	0.270	1.1e-12
TAIR|locus:2052362	443	AT2G42720 "AT2G42720" [Arabido	0.55	0.446	0.326	1.5e-12
TAIR|locus:2016630	505	AT1G58310 [Arabidopsis thalian	0.527	0.376	0.319	1.5e-12

TAIR|locus:2152950 AT5G41840 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 69/223 (30%), Positives = 114/223 (51%)

Query:    15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN-YFFPGASR 73
             V+ DRIS LP  +I H++S+L  KE A T+VL+K+W  L    P L+FD + YF P A R
Sbjct:    11 VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARR 70

Query:    74 LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
               Y            S++ + FM FVD+ L    K K  +++F +     DV   + +++
Sbjct:    71 NKY------------SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVLE 116

Query:   134 RWIRLAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRLVW---CRLEQPF 185
              WI   ++ GV ++D       N  + ++ Y+LP  IF + ++  L++ +     ++   
Sbjct:   117 -WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE- 174

Query:   186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-W 227
               + L  LK L L+   ++  M+ KL S C  LE+L  +N  W
Sbjct:   175 GGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLANLMW 217

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085013 AT3G42770 "AT3G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
 Identities = 66/203 (32%), Positives = 97/203 (47%)

Query:    23 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVR 82
             LP  ++  ++S+L  KE   TS+LSK+W  L+   P LDFD +                +
Sbjct:     4 LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFDNSLLLQS-----------K 52

Query:    83 KQNYSFSETVKKFMDFVDASL-VRFCK-LKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAV 140
             K+ ++     K F+ FVD++L ++  K +K    KF+   T  DV G    V+RWI  A+
Sbjct:    53 KRKWNMRNIQKSFVGFVDSTLALQGGKGIKSFSLKFKE--TLGDVNGEVD-VNRWICNAL 109

Query:   141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVW--CRLEQPFDSIMLCSLKKLTL 198
             E+GV EL      D      LP  IF++  +  L LV   C    P + I L SLK L L
Sbjct:   110 EHGVSELHLR--IDYTKRCHLPSEIFTSTKLVKLSLVTQSCFPVVP-NCISLPSLKVLFL 166

Query:   199 ERVCLDEQMVQKLASECPLLEDL 221
             + +  +        + CP LEDL
Sbjct:   167 DSIWFEVPQFLIFLTACPALEDL 189

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 6.9e-14, Sum P(3) = 6.9e-14
 Identities = 33/89 (37%), Positives = 48/89 (53%)

Query:   135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS-IMLCSL 193
             WI  A   GVR+L  ++   E+   TLP  +FS N    +  + C ++  F S + L SL
Sbjct:   110 WIATAFARGVRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSRVCLKSL 169

Query:   194 KKLTLERVCL-DEQMVQKLASECPLLEDL 221
             +KL L++V   DE+ V  L   CP L+DL
Sbjct:   170 RKLYLDQVHFKDEESVCNLLCGCPSLQDL 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160205 AT5G54820 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 56/217 (25%), Positives = 103/217 (47%)

Query:    15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASR 73
             +  DR+S LP  ++  ++S+L  KE  RTSVLSK+W  L +    L F + +Y  P  + 
Sbjct:     4 IQQDRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPDITD 63

Query:    74 LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
              +Y      +   SF  +V K++      +V     + C      F   +D      +  
Sbjct:    64 AEYSRIVAYR---SFFCSVDKWVSITQHQVVE--SFEICFSHLVGFEDKIDALIEYAVST 118

Query:   134 RWIRLAVE-NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCS 192
             R   L V+ +        +I+  + +YTLP++++S  ++ +L++  C+ + P   +    
Sbjct:   119 RVKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFD-PSKFVNPVL 177

Query:   193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL 229
             L+ L++  V L+   +  L S+ P L+ L   NCWG+
Sbjct:   178 LRSLSIGWVRLEN--LHSLLSKSPSLQSLSIKNCWGV 212

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
             DRIS LP  ++  ++S LS KE   TSVLSK+W  L++  P+LD D N F
Sbjct:    15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNF 64

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126096 AT4G00320 "AT4G00320" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 66/219 (30%), Positives = 106/219 (48%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
             D IS LP  +I H++S+L  K  A T+VL+K+W  L    P LDFD+++      R D  
Sbjct:    13 DGISGLPDAMICHILSFLPTKVAASTTVLAKRWKPLLAFMPNLDFDESF------RFDPR 66

Query:    78 SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
               C  ++  S S     FM  VD+ L    +    + KF  ++    V+ ++ +   WI 
Sbjct:    67 MTCEERRKGSES-----FMLVVDSVLALQAEANATLNKF--YVKCEGVEQNSVL--EWIP 117

Query:   138 LAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRLVW---CRLEQPFDSIM 189
               ++ GV ++D +          +T Y LP  IF + ++  L++ +     +    D + 
Sbjct:   118 KVLKRGVLDIDLQIPSSRGFGSNSTFYPLPSEIFVSKTLVRLKIQFQDGANVNVEGD-VS 176

Query:   190 LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-W 227
             L  LK L L+ V +D +M+QKL S C  LE+L   N  W
Sbjct:   177 LPMLKTLHLDYVKMDTRMLQKLLSGCHTLEELLLMNLIW 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2081247 AT3G59160 "AT3G59160" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 75/236 (31%), Positives = 106/236 (44%)

Query:     4 LTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFD 63
             + + K MD    + D I++LP  ++ H++SYL+ KE A TS+LS++W  L    P L+FD
Sbjct:     1 MVDSKRMDSG--SKDMINDLPDALLCHVLSYLTTKEAASTSLLSRRWRYLLAFVPNLEFD 58

Query:    64 QNYFFPGASRLDYGSFCVRKQNYSFSETV----KK----FMDFVDASLVRFCKLKFCIQK 115
              + +     R+        K    F  TV    KK    F DFVD  L    +    + K
Sbjct:    59 DSAYLHRDKRVKNPLH--EKGLVGFVLTVDDKRKKLSTSFPDFVDRILD--LQGNSPLDK 114

Query:   116 FRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLR 175
             F L +           V  WI   +  GV +L    + D N   +LP  IF   ++  L 
Sbjct:   115 FSLKMVDDHDPVDPDCVAPWIHKVLVRGVSDLHL--VIDMNEWTSLPAKIFLTETLVKLT 172

Query:   176 LVWCRLEQPFD--SIMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSNCW 227
             L   R   P D   + L  LK L LE V  DE+ +   KL S CP LE+L   + W
Sbjct:   173 LK-IRDGPPIDVKHVHLPKLKTLHLESVMFDEEDIGFSKLLSGCPELEELVLHHIW 227

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 39/144 (27%), Positives = 70/144 (48%)

Query:    98 FVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENT 157
             F+D +L R+   K  + +F L  + ++   + P ++ WI+ A+   V  L  +       
Sbjct:    84 FIDETLTRYTASK--MMRFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVAN 138

Query:   158 VYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPL 217
              +  P   F  NS  +L+ +   L+     I +C LKKL L    L ++ +  +   CP+
Sbjct:   139 KFKFPD-FFHINS--SLKQLTVVLDFSDTMIAIC-LKKLYLSTCLLSDESMANILFGCPI 194

Query:   218 LEDLCFSNCWGLKHLCVSKASKLK 241
             LE L   +C GL+ L +SK+ +L+
Sbjct:   195 LESLTLDHCGGLRVLDLSKSLRLR 218

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052362 AT2G42720 "AT2G42720" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 75/230 (32%), Positives = 109/230 (47%)

Query:    17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
             MDRIS LP  I+ H++S+LS KE A TS LS +W  ++V  P L             LDY
Sbjct:     1 MDRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSL------------HLDY 48

Query:    77 GSFCVRKQNYSFSETVKKFMDFVDASLVRFC-KLKFCIQKFRLFLTFLDVKG--SAPIVD 133
                   +Q+    E  ++F+DFVD     F  K    I+K  L +   D +   +   V 
Sbjct:    49 A-----RQH----ENPREFIDFVDFVNTLFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQ 99

Query:   134 RWI-RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLV-WCRLEQPFDSIMLC 191
              WI R+    GV +LD   IT +     +P  IF +N++  LRL     ++   +++ L 
Sbjct:   100 SWIHRVLSRGGVTDLDLF-ITFKGKFQLVPLLIFKSNTLVKLRLGRGFTIKLCHENVYLP 158

Query:   192 SLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKAS 238
              LK L L+ V  D    + + L   CPLLE+L   +  W  K  C S +S
Sbjct:   159 MLKTLCLDTVDFDGDHNVFETLLPRCPLLEELVLEDQRW--KQWCGSVSS 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2016630 AT1G58310 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 69/216 (31%), Positives = 107/216 (49%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFF------PGA 71
             D IS LP  ++ H++S+L+ KE A TSVL+KKW  L+ S P LDFD +         P  
Sbjct:     8 DIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLGKRNPAV 67

Query:    72 SRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI 131
             S  DY    ++  N    +    FMDFVD  ++R  +    + KF L +   D      I
Sbjct:    68 SGEDY----LKMINERSDQLSTSFMDFVD-QVLRL-QDNSPLHKFSLKIR--DCVDIVRI 119

Query:   132 VDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ-PF---DS 187
             +  WI   +E GV +L+ +      +  +LP  IF + ++  L+L    +E+ PF   + 
Sbjct:   120 IC-WILKVLERGVSDLELDMHLKWKS--SLPSKIFLSETLVRLKL---SVERGPFIDVED 173

Query:   188 IMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDL 221
             + L  LK L +  V  ++  +   KL S C +LE+L
Sbjct:   174 VHLPKLKTLHIVSVKFEKHGIGLNKLLSGCHILEEL 209

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.81
KOG4341	483	consensus F-box protein containing LRR [General fu	99.63
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.09
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.01
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.88
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.77
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.67
KOG4341	483	consensus F-box protein containing LRR [General fu	98.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.58
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.44
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.05
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.86
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.6
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.43
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.35
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.32
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.16
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.89
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.7
PRK15386	426	type III secretion protein GogB; Provisional	96.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.26
PRK15386	426	type III secretion protein GogB; Provisional	96.06
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.02
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.88
PLN03150	623	hypothetical protein; Provisional	95.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.61
KOG0472	565	consensus Leucine-rich repeat protein [Function un	95.49
PLN03150	623	hypothetical protein; Provisional	95.46
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.46
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.16
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	94.54
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.36
KOG4237	498	consensus Extracellular matrix protein slit, conta	94.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.96
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	92.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	91.23
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	90.11
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	89.9
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.6
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.71
PF13013	109	F-box-like_2: F-box-like domain	84.58
KOG3926	332	consensus F-box proteins [Amino acid transport and	81.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.49

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=3.6e-21  Score=163.97  Aligned_cols=274  Identities=23%  Similarity=0.251  Sum_probs=185.3

Q ss_pred             cccccCCchHHHHHHhcCCChhhhhhhcccccchhhhhccc---ceEEeeCCCcCCCCCCCcccccccccccchhhHhHH
Q 018106           17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSF---PILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVK   93 (360)
Q Consensus        17 ~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (360)
                      +--+..|||||+..||+.|+.+|+.+++.|||||.++...-   ..+++..+...+                        
T Consensus        95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p------------------------  150 (419)
T KOG2120|consen   95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP------------------------  150 (419)
T ss_pred             CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh------------------------
Confidence            33478899999999999999999999999999999764321   123444444322                        


Q ss_pred             HHHHHHHHHHhhhhcCCcccceEEEEeecCCCCCChhhHHHHHHHH--HHcCceEEEeecccCCCccccCcccccccCCc
Q 018106           94 KFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYTLPQAIFSANSV  171 (360)
Q Consensus        94 ~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~--~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L  171 (360)
                         +...+.+      ...+..|++-  ... .    +-++..+.+  ...++++++  +.........+...+..|..|
T Consensus       151 ---~~l~~l~------~rgV~v~Rla--r~~-~----~~prlae~~~~frsRlq~lD--LS~s~it~stl~~iLs~C~kL  212 (419)
T KOG2120|consen  151 ---DVLGRLL------SRGVIVFRLA--RSF-M----DQPRLAEHFSPFRSRLQHLD--LSNSVITVSTLHGILSQCSKL  212 (419)
T ss_pred             ---hHHHHHH------hCCeEEEEcc--hhh-h----cCchhhhhhhhhhhhhHHhh--cchhheeHHHHHHHHHHHHhh
Confidence               2223333      2344444433  110 1    112233322  335688888  655555556666677779999


Q ss_pred             cEEEEeeeeccCCC--CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCcc---cccc-CCCccEEE
Q 018106          172 TNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSK-ASKLKIME  244 (360)
Q Consensus       172 ~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~-l~~L~~L~  244 (360)
                      +.|+|.+..+.++-  ....=.+|+.|+++++.- +..+++-++..|..|.+|+|..|......   .+.+ -++|+.|+
T Consensus       213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN  292 (419)
T KOG2120|consen  213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN  292 (419)
T ss_pred             hhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence            99999999887654  333447899999999985 88889999999999999999999765432   1111 27999999


Q ss_pred             ecccc-----chhhhHhhcCCCccEEEEEeecC-CCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEec
Q 018106          245 IRSFS-----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVT  317 (360)
Q Consensus       245 l~~~~-----~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~  317 (360)
                      +++|.     ..+..+...||+|..|+++++.. .......+.+++.|++|+++.+. +....+.+ +...|.|.+|++.
T Consensus       293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~  371 (419)
T KOG2120|consen  293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVF  371 (419)
T ss_pred             hhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEec
Confidence            99987     33444456899999999996543 22333456788999999997665 33343443 5678999999999


Q ss_pred             CcCChhh---hhhcCCccc
Q 018106          318 RCCLPGK---IKISSNQLK  333 (360)
Q Consensus       318 ~c~~~~~---i~~~~~~L~  333 (360)
                      +|.....   +...+++|+
T Consensus       372 g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  372 GCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             cccCchHHHHHHHhCcccc
Confidence            9844433   334444433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.63  E-value=4.2e-18  Score=151.53  Aligned_cols=177  Identities=19%  Similarity=0.182  Sum_probs=102.9

Q ss_pred             cccccC-CchHHHHHHhcCCChhhhhhhcccccchhhhhcccce-EEeeCCCcCCCCCCCcccccccccccchhhHhHHH
Q 018106           17 MDRISE-LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI-LDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKK   94 (360)
Q Consensus        17 ~d~i~~-LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (360)
                      .+-++. ||.|++.+||++|+.+.+++++++|+-|+.+...... -..+..++....+.                     
T Consensus        68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g---------------------  126 (483)
T KOG4341|consen   68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG---------------------  126 (483)
T ss_pred             cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC---------------------
Confidence            344554 9999999999999999999999999999865211100 01222222111111                     


Q ss_pred             HHHHHHHHHhhhhcCCcccceEEEEeecCCCCCChhhHHHHHHHH--HHcCceEEEeecccCCCcccc-CcccccccCCc
Q 018106           95 FMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYT-LPQAIFSANSV  171 (360)
Q Consensus        95 ~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~--~~~~l~~L~~~l~~~~~~~~~-l~~~l~~~~~L  171 (360)
                        ..|..++   ...++.+++++++-...       .-++-+..+  ..+++++|.  +..+..-... +......|+.|
T Consensus       127 --~VV~~~~---~Rcgg~lk~LSlrG~r~-------v~~sslrt~~~~CpnIehL~--l~gc~~iTd~s~~sla~~C~~l  192 (483)
T KOG4341|consen  127 --GVVENMI---SRCGGFLKELSLRGCRA-------VGDSSLRTFASNCPNIEHLA--LYGCKKITDSSLLSLARYCRKL  192 (483)
T ss_pred             --cceehHh---hhhcccccccccccccc-------CCcchhhHHhhhCCchhhhh--hhcceeccHHHHHHHHHhcchh
Confidence              1222223   12346777777664421       122222222  237777776  6555432222 22222237888


Q ss_pred             cEEEEeeeeccCCC----CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCC
Q 018106          172 TNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG  228 (360)
Q Consensus       172 ~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~  228 (360)
                      ++|++..|..-...    .+.+||+|+.|+++++.- ++.+++.+..+|..++++.+++|..
T Consensus       193 ~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e  254 (483)
T KOG4341|consen  193 RHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE  254 (483)
T ss_pred             hhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc
Confidence            88888776532211    445778888888877764 5566777777777777777777655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.09  E-value=5.7e-10  Score=116.96  Aligned_cols=194  Identities=16%  Similarity=0.148  Sum_probs=88.8

Q ss_pred             cCceEEEeecccCCCccccCccccc-ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  220 (360)
                      ++++.|+  +..+. ....+|..++ .+++|++|++++|.+........+++|++|.++++.++.... ..+..+++|++
T Consensus        93 ~~L~~L~--Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTIN--LSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKV  168 (968)
T ss_pred             CCCCEEE--CCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCC-hHHhcCCCCCE
Confidence            5677777  43221 1224555555 466777777776665432223345666666666665532211 22455566666


Q ss_pred             EEeecCCCCCcc--ccccCCCccEEEecccc--chhhhHh------------------------hcCCCccEEEEEeecC
Q 018106          221 LCFSNCWGLKHL--CVSKASKLKIMEIRSFS--EEIEIVE------------------------ISVPSLQQLTLLFYGA  272 (360)
Q Consensus       221 L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~--~~~~~~~------------------------~~~p~L~~L~l~~~~~  272 (360)
                      |++.+|.....+  .+..+++|+.|++.+|.  ..+....                        ..+++|++|++..+..
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            666655432211  12334555555555443  0011111                        2334444444443332


Q ss_pred             CCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEecccc
Q 018106          273 RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c  340 (360)
                      ....+..+..+++|+.|++.++.+.+.. ...+..+++|++|++++|...   .......++|+.|++.++
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n  318 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN  318 (968)
T ss_pred             ccccChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence            2223333444555555555544443321 112334455555555555211   122234456666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.01  E-value=1.3e-09  Score=114.25  Aligned_cols=128  Identities=16%  Similarity=0.047  Sum_probs=64.1

Q ss_pred             hcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc--chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccE
Q 018106          213 SECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKK  288 (360)
Q Consensus       213 ~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~  288 (360)
                      ..+++|++|++.+|...+.+  .+..+++|+.|.+.++.  .........+++|++|+++.+......+..+..+++|+.
T Consensus       233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  312 (968)
T PLN00113        233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI  312 (968)
T ss_pred             hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence            34445555555444322111  12234555555555543  111111124456666666544333333334456667777


Q ss_pred             EEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106          289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       289 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~  341 (360)
                      |++.++.+.... ...+..+++|++|++.+|...   .......++|+.|+++++.
T Consensus       313 L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        313 LHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             EECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            777666654432 233456777777777776322   2223345677777776654

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.93  E-value=7e-10  Score=70.47  Aligned_cols=36  Identities=31%  Similarity=0.683  Sum_probs=31.4

Q ss_pred             ccCCchHHHHHHhcCCChhhhhhhcccccchhhhhc
Q 018106           20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   55 (360)
Q Consensus        20 i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~   55 (360)
                      |..||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999998653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=5.2e-10  Score=100.96  Aligned_cols=173  Identities=20%  Similarity=0.179  Sum_probs=120.1

Q ss_pred             cCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCC---CccccccCCCc
Q 018106          168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---KHLCVSKASKL  240 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~i~~l~~L  240 (360)
                      .+.|+...|.++.+...+   ....||+++.|+|+.+-+ ....+..++...|+||.|+|+.+...   .......++.|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            567888888888876555   567899999999999887 67778888999999999999876431   11111245899


Q ss_pred             cEEEecccc---chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEec
Q 018106          241 KIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT  317 (360)
Q Consensus       241 ~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~  317 (360)
                      +.|.+..|.   ..+..+...+|+|+.|.+..+..-.........+..|+.|+|+++.+.+.........+|.|+.|+++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            999999997   34556667899999999985531111112234467888888888776654444456678888888888


Q ss_pred             CcCC--h-------hhhhhcCCccceEecccc
Q 018106          318 RCCL--P-------GKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       318 ~c~~--~-------~~i~~~~~~L~~L~l~~c  340 (360)
                      .|..  +       .+.....++|+.|.+..-
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccC
Confidence            7711  1       112235677888877543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.87  E-value=1.3e-08  Score=92.89  Aligned_cols=178  Identities=20%  Similarity=0.146  Sum_probs=107.9

Q ss_pred             cccccCCccEEEEeeeeccCCC--CccCC---CCCCEEEeeeEEeChHHHHHH---HhcC-CcccEEEeecCCCCCc---
Q 018106          164 AIFSANSVTNLRLVWCRLEQPF--DSIML---CSLKKLTLERVCLDEQMVQKL---ASEC-PLLEDLCFSNCWGLKH---  231 (360)
Q Consensus       164 ~l~~~~~L~~L~L~~~~~~~~~--~~~~~---~~L~~L~L~~~~~~~~~l~~l---~~~c-p~Le~L~l~~c~~~~~---  231 (360)
                      .+..+++|+.|++.+|.+....  ....+   ++|++|+++++.+++.....+   +..+ ++|++|++.+|.....   
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            3445678888888887765221  11112   458888888887765444432   3455 7888888888864321   


Q ss_pred             -c--ccccCCCccEEEecccc---chhhhHh---hcCCCccEEEEEeecCCCc----ceeeccCCCCccEEEeeccccCc
Q 018106          232 -L--CVSKASKLKIMEIRSFS---EEIEIVE---ISVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLVSVYFAD  298 (360)
Q Consensus       232 -~--~i~~l~~L~~L~l~~~~---~~~~~~~---~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  298 (360)
                       +  .+..+++|+.|++.+|.   ..+..+.   ...++|++|++..+.....    ....+..+++|+.|+++++.+++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence             0  12234678888888776   1122222   2446888888885543221    12234567888888888887777


Q ss_pred             HHHHHHhcCC----CCCCEEEecCcCCh----hhh---hhcCCccceEeccccc
Q 018106          299 NEFNHLISKF----PSLEDLFVTRCCLP----GKI---KISSNQLKNLLFRSCK  341 (360)
Q Consensus       299 ~~~~~~~~~~----~~L~~L~L~~c~~~----~~i---~~~~~~L~~L~l~~c~  341 (360)
                      ..+..+...+    +.|++|++.+|...    ..+   ....++|+.++++++.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            5555554443    68888888887331    122   2234678888887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=4.2e-10  Score=96.95  Aligned_cols=203  Identities=22%  Similarity=0.166  Sum_probs=135.7

Q ss_pred             HHHHHHcCceEEEeecccCCCccc-cCcccccccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHH
Q 018106          136 IRLAVENGVRELDFENITDENTVY-TLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKL  211 (360)
Q Consensus       136 l~~~~~~~l~~L~~~l~~~~~~~~-~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l  211 (360)
                      +.....+++..+.  +.......- -.+.....-..|++|+|+...+....   ....|.+||.|++.+.+.+|+-... 
T Consensus       153 l~~l~~rgV~v~R--lar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-  229 (419)
T KOG2120|consen  153 LGRLLSRGVIVFR--LARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-  229 (419)
T ss_pred             HHHHHhCCeEEEE--cchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-
Confidence            4555667888887  432111111 11111111356899999887665443   3457889999999999988777666 


Q ss_pred             HhcCCcccEEEeecCCCCCcccc----ccCCCccEEEeccccchhhhH----hhcCCCccEEEEEeecCC---Ccceeec
Q 018106          212 ASECPLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGAR---RPRVVEV  280 (360)
Q Consensus       212 ~~~cp~Le~L~l~~c~~~~~~~i----~~l~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~---~~~~~~~  280 (360)
                      ++....|+.|+|++|.+++...+    ++|.+|..|+++.|...-+.+    .-.-|+|+.|.++++-..   .......
T Consensus       230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~  309 (419)
T KOG2120|consen  230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV  309 (419)
T ss_pred             HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence            45568899999999999876543    578999999999998222222    124578999999833211   1112234


Q ss_pred             cCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCCh--hhhh--hcCCccceEecccccc
Q 018106          281 ARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLP--GKIK--ISSNQLKNLLFRSCKY  342 (360)
Q Consensus       281 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~~--~~i~--~~~~~L~~L~l~~c~~  342 (360)
                      ..||+|.+|+|+.+. ++++. ...+-.++.|++|.++.|..+  +.+.  ...|.|..|++.+|-.
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            779999999998665 56654 445668999999999999433  2222  3578999999988743

>PLN03210 Resistant to P

Probab=98.78  E-value=3.1e-08  Score=105.08  Aligned_cols=62  Identities=21%  Similarity=0.309  Sum_probs=38.5

Q ss_pred             CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh--cCCccceEecccccccccc
Q 018106          284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI--SSNQLKNLLFRSCKYLKSA  346 (360)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~--~~~~L~~L~l~~c~~l~~~  346 (360)
                      ++|+.|++.++..... +...+..+++|+.|+|.+|..++.+..  .+++|+.|++++|..++..
T Consensus       778 ~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             ccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence            4566666655432222 222356778888888888865555432  3567888888888766543

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.77  E-value=8.9e-09  Score=93.95  Aligned_cols=197  Identities=17%  Similarity=0.109  Sum_probs=130.9

Q ss_pred             cCceEEEeecccCCCcc---ccCcccccccCCccEEEEeeeeccC--CC------CccCCCCCCEEEeeeEEeCh---HH
Q 018106          142 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQ--PF------DSIMLCSLKKLTLERVCLDE---QM  207 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~L~~~~~~~--~~------~~~~~~~L~~L~L~~~~~~~---~~  207 (360)
                      .+++++.  +..+....   ..++..+...++|++|.+.++.+..  ..      ....+++|+.|.++++.+..   ..
T Consensus        23 ~~L~~l~--l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          23 LCLQVLR--LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             hhccEEe--ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            5599999  65443322   2344445557889999999887652  21      22347799999999998743   23


Q ss_pred             HHHHHhcCCcccEEEeecCCCCCc------cccccC-CCccEEEeccccc---hhhhH---hhcCCCccEEEEEeecCCC
Q 018106          208 VQKLASECPLLEDLCFSNCWGLKH------LCVSKA-SKLKIMEIRSFSE---EIEIV---EISVPSLQQLTLLFYGARR  274 (360)
Q Consensus       208 l~~l~~~cp~Le~L~l~~c~~~~~------~~i~~l-~~L~~L~l~~~~~---~~~~~---~~~~p~L~~L~l~~~~~~~  274 (360)
                      +..+... ++|++|++.+|.....      ..+..+ ++|+.|++.+|.-   ....+   ...+++|+.|++..+....
T Consensus       101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            4444444 6799999999864321      112345 8999999999871   11222   2356789999999665542


Q ss_pred             cc----eeeccCCCCccEEEeeccccCcHH---HHHHhcCCCCCCEEEecCcCCh----hhhhhc----CCccceEeccc
Q 018106          275 PR----VVEVARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLP----GKIKIS----SNQLKNLLFRS  339 (360)
Q Consensus       275 ~~----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~c~~~----~~i~~~----~~~L~~L~l~~  339 (360)
                      ..    ...+...++|+.|++.++.+++..   +...+..+++|++|++++|...    ..+...    .++|++|++.+
T Consensus       180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~  259 (319)
T cd00116         180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC  259 (319)
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence            11    122445679999999998887644   3445667899999999998432    222222    37999999998


Q ss_pred             cc
Q 018106          340 CK  341 (360)
Q Consensus       340 c~  341 (360)
                      |.
T Consensus       260 n~  261 (319)
T cd00116         260 ND  261 (319)
T ss_pred             CC
Confidence            84

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.67  E-value=1e-07  Score=101.21  Aligned_cols=125  Identities=25%  Similarity=0.318  Sum_probs=77.6

Q ss_pred             CcccEEEeecCCCCCccc--cccCCCccEEEeccccchhhhHh--hcCCCccEEEEEeecCCCcceeeccCCCCccEEEe
Q 018106          216 PLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  291 (360)
Q Consensus       216 p~Le~L~l~~c~~~~~~~--i~~l~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  291 (360)
                      |+|+.|++.+|.....+.  +.++++|+.|++.+|. .+..+.  +.+++|++|.++.|.....++   ...++|+.|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~-~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI-NLETLPTGINLESLESLDLSGCSRLRTFP---DISTNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCC-CcCeeCCCCCccccCEEECCCCCcccccc---ccccccCEeEC
Confidence            455555555554433322  2345667777777665 333332  245667777776443221111   12357888888


Q ss_pred             eccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh---cCCccceEecccccccccc
Q 018106          292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKSA  346 (360)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~---~~~~L~~L~l~~c~~l~~~  346 (360)
                      .++.++.  +...+..+++|++|+|.+|..+..+..   ..++|+.+++.+|..++..
T Consensus       854 s~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        854 SRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence            8777653  344467899999999999977766543   4567888899999888753

syringae 6; Provisional

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.67  E-value=2.3e-09  Score=96.33  Aligned_cols=204  Identities=19%  Similarity=0.195  Sum_probs=137.3

Q ss_pred             cCceEEEeecccCCCcc-ccCcccccccCCccEEEEeeeeccCCC----CccCCCCCCEEEeeeEE-eChHHHHHHHhcC
Q 018106          142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVC-LDEQMVQKLASEC  215 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~c  215 (360)
                      ..++++.  +..+.... ..+-.....|+++++|.+.+|...+..    ....|++|+.|.+..|. +++..++.+..+|
T Consensus       138 g~lk~LS--lrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELS--LRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             ccccccc--ccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            5688888  76654433 344444556999999999998743222    55679999999998865 4888899899999


Q ss_pred             CcccEEEeecCCCCCcccc----ccCCCccEEEecccc-chhh---hHhhcCCC--------------------------
Q 018106          216 PLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFS-EEIE---IVEISVPS--------------------------  261 (360)
Q Consensus       216 p~Le~L~l~~c~~~~~~~i----~~l~~L~~L~l~~~~-~~~~---~~~~~~p~--------------------------  261 (360)
                      |+|++|+++.|+.+..-.+    .++..++.+...+|. .+++   .+.-.++-                          
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            9999999999987654222    234556666555665 1122   22223333                          


Q ss_pred             ccEEEEEeecCCC--cceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCC-----hhhhhhcCCccc
Q 018106          262 LQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCL-----PGKIKISSNQLK  333 (360)
Q Consensus       262 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~-----~~~i~~~~~~L~  333 (360)
                      |+.+..+.+....  .......++++|+.|.+.++. +++..+..+..+++.|+.+++.+|..     +......|+.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            3333333211111  111123568899999998765 88888888888999999999998822     233445789999


Q ss_pred             eEeccccccccccc
Q 018106          334 NLLFRSCKYLKSAL  347 (360)
Q Consensus       334 ~L~l~~c~~l~~~~  347 (360)
                      +|++++|..+++.+
T Consensus       376 ~lslshce~itD~g  389 (483)
T KOG4341|consen  376 VLSLSHCELITDEG  389 (483)
T ss_pred             cCChhhhhhhhhhh
Confidence            99999999998873

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.67  E-value=2.9e-09  Score=99.50  Aligned_cols=171  Identities=20%  Similarity=0.171  Sum_probs=111.6

Q ss_pred             cccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCC--CCccccccCCCcc
Q 018106          166 FSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG--LKHLCVSKASKLK  241 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~~i~~l~~L~  241 (360)
                      +.+.++++|+|..+++....  ...++..|++|+++++.+..-.... ++.|++|++|+|+++..  +..-....+..|+
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            34677778888777765332  4556778888888888763333333 56799999999998753  2222233457899


Q ss_pred             EEEecccc-chhhhHh-hcCCCccEEEEEeecC---CCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEe
Q 018106          242 IMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGA---RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV  316 (360)
Q Consensus       242 ~L~l~~~~-~~~~~~~-~~~p~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L  316 (360)
                      .|.++.+. +.+.... ....+|+.|++..+..   .+.....+..++.|+.|.+.|+++..- ..+.+.++++||.|+|
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALEHLDL  423 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-chhhhccCcccceecC
Confidence            99998775 3333322 3567788888873322   223344567799999999999987653 3455789999999999


Q ss_pred             cCcCC---hhhhhhcCCccceEeccc
Q 018106          317 TRCCL---PGKIKISSNQLKNLLFRS  339 (360)
Q Consensus       317 ~~c~~---~~~i~~~~~~L~~L~l~~  339 (360)
                      .++..   ..+..... .||+|.+..
T Consensus       424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  424 GDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             CCCcceeecccccccc-hhhhhhhcc
Confidence            99722   12222233 677776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=5.7e-08  Score=85.67  Aligned_cols=211  Identities=22%  Similarity=0.274  Sum_probs=116.7

Q ss_pred             CcccceEEEEeecCCCCCChhhHHHHHHHHHH--cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCc
Q 018106          110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS  187 (360)
Q Consensus       110 ~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~--~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~  187 (360)
                      ...+.++++.-.     ..+....+|+....+  +.+++.+++-.+..+....+|..+      +.|.       .  ..
T Consensus        29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L------~~l~-------~--aL   88 (382)
T KOG1909|consen   29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL------KMLS-------K--AL   88 (382)
T ss_pred             cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH------HHHH-------H--HH
Confidence            445555554422     233356678877655  566666633233333334444322      1000       0  12


Q ss_pred             cCCCCCCEEEeeeEEe---ChHHHHHHHhcCCcccEEEeecCCCCC-----------cc----ccccCCCccEEEecccc
Q 018106          188 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLK-----------HL----CVSKASKLKIMEIRSFS  249 (360)
Q Consensus       188 ~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~-----------~~----~i~~l~~L~~L~l~~~~  249 (360)
                      ..+|.|++|+|+++-+   +...+..++++|..|++|.|.+|..-.           .+    .+.+-|.|+++....+.
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            3455666666666665   345567778888888888888875410           01    11233678888777665


Q ss_pred             ---ch---hhhHhhcCCCccEEEEEeecCCCcce----eeccCCCCccEEEeeccccCc---HHHHHHhcCCCCCCEEEe
Q 018106          250 ---EE---IEIVEISVPSLQQLTLLFYGARRPRV----VEVARSPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDLFV  316 (360)
Q Consensus       250 ---~~---~~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~L  316 (360)
                         .+   +....-..|.|+.+++..++......    ..+..||+|+.|+|..+.++.   ..+.+.++.+|+|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence               11   11122355778888887555433222    234667888888887766654   344555667777888888


Q ss_pred             cCcC--------ChhhhhhcCCccceEecccc
Q 018106          317 TRCC--------LPGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       317 ~~c~--------~~~~i~~~~~~L~~L~l~~c  340 (360)
                      +.|.        ....+....|+|+.|.+.++
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcc
Confidence            8771        11223334566666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.1e-08  Score=92.52  Aligned_cols=176  Identities=21%  Similarity=0.173  Sum_probs=110.0

Q ss_pred             cCceEEEeecccCCCc-cccCcccccccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHHHhcCCc
Q 018106          142 NGVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPL  217 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~-~~~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  217 (360)
                      ++++.|+  +...-.. ...+-..+-..++|+.|+++.+.+....   ....+++||+|.|+.|.++...+..++..||.
T Consensus       146 ~~v~~Ld--LS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  146 PNVRDLD--LSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             Ccceeec--chhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            5677777  4322111 1223333445788999999888765332   33468899999999999999999999999999


Q ss_pred             ccEEEeecCCCCCccccc--cCCCccEEEecccc---chhhhHhhcCCCccEEEEEeecCCCcc------eeeccCCCCc
Q 018106          218 LEDLCFSNCWGLKHLCVS--KASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPR------VVEVARSPHL  286 (360)
Q Consensus       218 Le~L~l~~c~~~~~~~i~--~l~~L~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~------~~~~~~~~~L  286 (360)
                      |+.|.+.++..+.....+  -+..|+.|++.++.   .......-.+|.|+-|.+..++...-.      ......+|.|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            999999988543222211  23588888888776   111122346777777777755542211      1113456778


Q ss_pred             cEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          287 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       287 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +.|.+..+.+.+.....-+...++|+.|.+..+
T Consensus       304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             eeeecccCccccccccchhhccchhhhhhcccc
Confidence            888777666644323333445666666665543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.58  E-value=1.8e-08  Score=64.27  Aligned_cols=38  Identities=39%  Similarity=0.737  Sum_probs=32.1

Q ss_pred             cccCCchHHHHHHhcCCChhhhhhhcccccchhhhhcc
Q 018106           19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   56 (360)
Q Consensus        19 ~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~   56 (360)
                      .++.||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            46789999999999999999999999999999988754

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.49  E-value=1.4e-07  Score=91.10  Aligned_cols=204  Identities=22%  Similarity=0.292  Sum_probs=129.1

Q ss_pred             cCceEEEeecccCCCcc-ccCcccccccCCccEEEEeee-eccC-C-----CCccCCCCCCEEEeeeEE-eChHHHHHHH
Q 018106          142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWC-RLEQ-P-----FDSIMLCSLKKLTLERVC-LDEQMVQKLA  212 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~~-~~~~-~-----~~~~~~~~L~~L~L~~~~-~~~~~l~~l~  212 (360)
                      +.++++.  +..+.... ..+......++.|+.|.+.+| .... .     .....+++|+.|.+.++. +++..+..+.
T Consensus       188 ~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  188 PLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             chhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            5667776  44332222 123445566899999999873 2111 1     144567899999999888 6889999888


Q ss_pred             hcCCcccEEEeecCCCCCcccc----ccCCCccEEEecccc----chhhhHhhcCCCccEEEEEeecC------------
Q 018106          213 SECPLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA------------  272 (360)
Q Consensus       213 ~~cp~Le~L~l~~c~~~~~~~i----~~l~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~------------  272 (360)
                      ..||+||.|.+.+|..++...+    ..+++|+.|++..|.    ..+..+...+|+|+.|.+.....            
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~  345 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL  345 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence            8899999999888886544333    246889999999887    22445555788888877653221            


Q ss_pred             -----CCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCC--------------CEEEecCcCChh-----hhhhc
Q 018106          273 -----RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL--------------EDLFVTRCCLPG-----KIKIS  328 (360)
Q Consensus       273 -----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--------------~~L~L~~c~~~~-----~i~~~  328 (360)
                           ..........+++++.+.+......+......+.+||+|              +.|.+..|....     .....
T Consensus       346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~  425 (482)
T KOG1947|consen  346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS  425 (482)
T ss_pred             hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhh
Confidence                 012223356788888888876665554445666777766              566666662211     11112


Q ss_pred             CCccceEeccccccccccc
Q 018106          329 SNQLKNLLFRSCKYLKSAL  347 (360)
Q Consensus       329 ~~~L~~L~l~~c~~l~~~~  347 (360)
                      +..++.+.+.+|..++...
T Consensus       426 ~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             hhccccCCccCcccccchh
Confidence            5566777777776665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.47  E-value=3.8e-08  Score=92.26  Aligned_cols=171  Identities=20%  Similarity=0.169  Sum_probs=89.9

Q ss_pred             cCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCC--CCccccccCCCccEE
Q 018106          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG--LKHLCVSKASKLKIM  243 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~~i~~l~~L~~L  243 (360)
                      ..++++|+|.++.+....  ....+.+|..|.|++++++.-.. ..+++.|+|+.|+|..+..  ...+...++++|+.|
T Consensus       172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CCCceEEeeccccccccccccccccchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence            467888888888776433  44556677888888877753332 2366778888887776643  112223344444444


Q ss_pred             Eecccc-c---------------------hhhhHh----hcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106          244 EIRSFS-E---------------------EIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (360)
Q Consensus       244 ~l~~~~-~---------------------~~~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (360)
                      .+..+. .                     .+..+.    ..+..|+.|+++.+....-....++.+++|+.|+|+++.++
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            444332 0                     111111    12344455555533332222234566777777777666543


Q ss_pred             c---HH--------------------HHHHhcCCCCCCEEEecCcCC---hh---hhhhcCCccceEeccc
Q 018106          298 D---NE--------------------FNHLISKFPSLEDLFVTRCCL---PG---KIKISSNQLKNLLFRS  339 (360)
Q Consensus       298 ~---~~--------------------~~~~~~~~~~L~~L~L~~c~~---~~---~i~~~~~~L~~L~l~~  339 (360)
                      .   ..                    -...+.++.+|++|+|+.+..   ++   ....+.++|++|.+.+
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g  401 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG  401 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence            2   11                    112244456677777766511   11   1223466777777764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.44  E-value=1.5e-07  Score=93.51  Aligned_cols=152  Identities=18%  Similarity=0.219  Sum_probs=113.5

Q ss_pred             cCCccEEEEeeeeccCCC----CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEE
Q 018106          168 ANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM  243 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L  243 (360)
                      -.+|++|+++|...-...    .+..||+|++|.+.+..+..+.+..+..++|+|..|+++++..-.-..++.+++|+.|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL  200 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence            367888888885433222    4457999999999999997777888999999999999999875555667788999999


Q ss_pred             Eecccc-chhhhH--hhcCCCccEEEEEeecCCCccee------eccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEE
Q 018106          244 EIRSFS-EEIEIV--EISVPSLQQLTLLFYGARRPRVV------EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (360)
Q Consensus       244 ~l~~~~-~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  314 (360)
                      .+.+-. .....+  ...+.+|+.|+++.........+      --..+|+|+.|+.++..+..+.+..++..-|+|+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            988665 111111  23788999999994332222111      124589999999999999999999999988998888


Q ss_pred             EecCc
Q 018106          315 FVTRC  319 (360)
Q Consensus       315 ~L~~c  319 (360)
                      ..-.|
T Consensus       281 ~~~~~  285 (699)
T KOG3665|consen  281 AALDC  285 (699)
T ss_pred             hhhhh
Confidence            76654

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.36  E-value=2e-07  Score=57.20  Aligned_cols=34  Identities=32%  Similarity=0.593  Sum_probs=31.7

Q ss_pred             CchHHHHHHhcCCChhhhhhhcccccchhhhhcc
Q 018106           23 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   56 (360)
Q Consensus        23 LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~   56 (360)
                      ||+|++.+||++++.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.33  E-value=5.2e-07  Score=79.71  Aligned_cols=177  Identities=17%  Similarity=0.170  Sum_probs=115.2

Q ss_pred             cCceEEEeecccCCCcc---ccCcccccccCCccEEEEeeeeccCCC---------------CccCCCCCCEEEeeeEEe
Q 018106          142 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF---------------DSIMLCSLKKLTLERVCL  203 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~L~~~~~~~~~---------------~~~~~~~L~~L~L~~~~~  203 (360)
                      +.++.++  +.-....+   -.+-..+.+|.+|++|.|.+|.+.+.+               ....=|.|+++...+++.
T Consensus        92 ~~L~~ld--LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   92 PKLQKLD--LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             CceeEee--ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            4889998  53332222   223334556999999999999876543               122346899999999998


Q ss_pred             C---hHHHHHHHhcCCcccEEEeecCCCCCc------cccccCCCccEEEeccccchh---hhHh---hcCCCccEEEEE
Q 018106          204 D---EQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFSEEI---EIVE---ISVPSLQQLTLL  268 (360)
Q Consensus       204 ~---~~~l~~l~~~cp~Le~L~l~~c~~~~~------~~i~~l~~L~~L~l~~~~~~~---~~~~---~~~p~L~~L~l~  268 (360)
                      .   ...+...+..+|.|+++.+..+.....      .....+|+|+.|++..+....   ..+.   ...|+|+.+.++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            3   334666778899999999988754221      122357999999998776111   1221   255678888888


Q ss_pred             eecCCCcceee-----ccCCCCccEEEeeccccCcHHHHH---HhcCCCCCCEEEecCcC
Q 018106          269 FYGARRPRVVE-----VARSPHLKKLDLVSVYFADNEFNH---LISKFPSLEDLFVTRCC  320 (360)
Q Consensus       269 ~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~L~~c~  320 (360)
                      +|-........     -...|+|+.|.+.++.++.+....   ....-|.|+.|+|++|.
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            66543332222     134788888888888776543333   23346788888888873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.30  E-value=6.7e-07  Score=73.44  Aligned_cols=40  Identities=28%  Similarity=0.257  Sum_probs=16.3

Q ss_pred             ccCCCCccEEEeeccccCc--HHHHHHhcCCCCCCEEEecCc
Q 018106          280 VARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +..+|+|+.|++.++.++.  .--..++..+|+|+.|+-...
T Consensus       109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            4456666666666655433  112333445566666655443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.30  E-value=2.1e-07  Score=76.34  Aligned_cols=74  Identities=19%  Similarity=0.066  Sum_probs=33.8

Q ss_pred             CCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh------hhhhhcCCccceEecccccccccccccceeeee
Q 018106          282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP------GKIKISSNQLKNLLFRSCKYLKSALCVKVFSTL  355 (360)
Q Consensus       282 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~------~~i~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  355 (360)
                      .+|+|+.|.+.++.+.+-.-...+..+|+|+.|+|.+|+..      ..+...+|+|+.|+-.....-.....-..|...
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~~~  165 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKLFKGK  165 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B-----------
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhcccccccccc
Confidence            57888888888777755322344678999999999998432      235568999999997766665555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=4e-06  Score=72.79  Aligned_cols=182  Identities=16%  Similarity=0.138  Sum_probs=129.5

Q ss_pred             cCceEEEeecccC-CCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106          142 NGVRELDFENITD-ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  218 (360)
                      ..|++++  +... .....++.+.+-+.|.|+.|+|+++.+.+.-  .+....+|++|.|.+...+.......+...|.+
T Consensus        71 ~~v~elD--L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELD--LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhh--cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4678888  5333 2233445555556899999999999887654  224566999999999988888888999999999


Q ss_pred             cEEEeecCCC----CCccccc-cCCCccEEEecccc----chhhhHhhcCCCccEEEEEeecCCC-cceeeccCCCCccE
Q 018106          219 EDLCFSNCWG----LKHLCVS-KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKK  288 (360)
Q Consensus       219 e~L~l~~c~~----~~~~~i~-~l~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~  288 (360)
                      ++|.++.+..    .+.-.+. --+.++.|+...|.    .+...+.-.+||+.++.+..+.... .........|.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999887632    1111111 11688888988887    3444555678999999999664432 22234456788888


Q ss_pred             EEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhh
Q 018106          289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI  325 (360)
Q Consensus       289 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i  325 (360)
                      |.|..+.+.+.+-..-+.+||.|..|.+.+++..+.+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            8898888766544555889999999999998655544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.93  E-value=9.6e-07  Score=87.12  Aligned_cols=158  Identities=17%  Similarity=0.138  Sum_probs=107.6

Q ss_pred             cCcccccccCCccEEEEeeeeccCCC---------------------------CccCCCCCCEEEeeeEEeChHHHHHHH
Q 018106          160 TLPQAIFSANSVTNLRLVWCRLEQPF---------------------------DSIMLCSLKKLTLERVCLDEQMVQKLA  212 (360)
Q Consensus       160 ~l~~~l~~~~~L~~L~L~~~~~~~~~---------------------------~~~~~~~L~~L~L~~~~~~~~~l~~l~  212 (360)
                      .+|......++|++|+|..+.+..-+                           ....++.|+.|.+.++.+++..+. ++
T Consensus       301 yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l  379 (1081)
T KOG0618|consen  301 YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VL  379 (1081)
T ss_pred             hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hh
Confidence            44445555677778887776543211                           122345677788888888777766 46


Q ss_pred             hcCCcccEEEeecCC--CCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEE
Q 018106          213 SECPLLEDLCFSNCW--GLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL  289 (360)
Q Consensus       213 ~~cp~Le~L~l~~c~--~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (360)
                      .+.++|+.|+|.++.  .+....+.+++.|+.|.++++. ..+..-...++.|+.|....+.. ..++ .+..++.|+.+
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVL  457 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEE
Confidence            788999999999884  2334445567888999999886 22332234677788777663222 3334 67889999999


Q ss_pred             EeeccccCcHHHHHHhcCCCCCCEEEecCcCC
Q 018106          290 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCL  321 (360)
Q Consensus       290 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~  321 (360)
                      |++.+.++...+.+.... |+|++|+++++..
T Consensus       458 DlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             ecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            999998877666654444 8999999999853

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.88  E-value=1.1e-07  Score=89.92  Aligned_cols=186  Identities=15%  Similarity=0.064  Sum_probs=98.0

Q ss_pred             CCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc
Q 018106          154 DENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH  231 (360)
Q Consensus       154 ~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~  231 (360)
                      +......+|+.+.+...|++|.|+++.+....  ....+.+|++|++++..-+...+..-+....+|.+++++.+.....
T Consensus       158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v  237 (1255)
T KOG0444|consen  158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV  237 (1255)
T ss_pred             ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc
Confidence            34445566666666777777777776654221  1223345555566665544333333344556677777765432111


Q ss_pred             -cccccCCCccEEEeccccchhhhHh---hcCCCccEEEEEeecCC------------------------CcceeeccCC
Q 018106          232 -LCVSKASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGAR------------------------RPRVVEVARS  283 (360)
Q Consensus       232 -~~i~~l~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~------------------------~~~~~~~~~~  283 (360)
                       -.+-.+++|++|+++++.  +..+.   -.-.+|++|.++.+...                        +..+..++++
T Consensus       238 Pecly~l~~LrrLNLS~N~--iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNK--ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             hHHHhhhhhhheeccCcCc--eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence             112235677777777664  11111   01123444444422221                        1222334455


Q ss_pred             CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc--CChhhhhhcCCccceEeccccccc
Q 018106          284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC--CLPGKIKISSNQLKNLLFRSCKYL  343 (360)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c--~~~~~i~~~~~~L~~L~l~~c~~l  343 (360)
                      .+|+.+...++.+.  .+.+-+..|+.|+.|.|+.+  ..+...+...+.|+.|++..-+++
T Consensus       316 ~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence            55555555544432  23444566788888888776  233445556778888888876654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.86  E-value=4.4e-07  Score=86.04  Aligned_cols=174  Identities=17%  Similarity=0.088  Sum_probs=119.8

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  220 (360)
                      ..++.|+  +....+....+|..+-...+|..++++.+.++..+ ....+++|++|+|+++.+++-.+.  .....+||.
T Consensus       197 tsL~vLh--ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEt  272 (1255)
T KOG0444|consen  197 TSLSVLH--MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLET  272 (1255)
T ss_pred             hhhhhhh--cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhh
Confidence            3455556  55556667788888888899999999998877554 556789999999999988544332  344578999


Q ss_pred             EEeecCCCCCc-cccccCCCccEEEeccccchhhhHhh---cCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          221 LCFSNCWGLKH-LCVSKASKLKIMEIRSFSEEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       221 L~l~~c~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      |+++.+....- -.+..+++|+.|.+.++.-.++.+..   .+.+|+.|... ++..+-.+..+..|+.|+.|.|+.+.+
T Consensus       273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa-nN~LElVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA-NNKLELVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh-ccccccCchhhhhhHHHHHhcccccce
Confidence            99998753221 12335688988888776533333322   33456666665 333345566788999999999988774


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCcCCh
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRCCLP  322 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c~~~  322 (360)
                      ..  +.+.+.-+|.|+.|++..++.+
T Consensus       352 iT--LPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  352 IT--LPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ee--chhhhhhcCCcceeeccCCcCc
Confidence            32  3344556789999999998543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.79  E-value=1.1e-05  Score=77.86  Aligned_cols=178  Identities=24%  Similarity=0.341  Sum_probs=104.8

Q ss_pred             cCCccEEEEeeeeccCCC-----CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecC-CCCCc------ccc
Q 018106          168 ANSVTNLRLVWCRLEQPF-----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNC-WGLKH------LCV  234 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c-~~~~~------~~i  234 (360)
                      +..++.+++..+......     ....+|+|+.|.+.++.. .+..+..+...||+|++|++.+| .....      ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  239 (482)
T KOG1947|consen  160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL  239 (482)
T ss_pred             HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence            445556665554422111     233478999999988864 66667788889999999999873 22111      111


Q ss_pred             ccCCCccEEEecccc----chhhhHhhcCCCccEEEEEeecC-CC-cceeeccCCCCccEEEeeccc-cCcHHHHHHhcC
Q 018106          235 SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-RR-PRVVEVARSPHLKKLDLVSVY-FADNEFNHLISK  307 (360)
Q Consensus       235 ~~l~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~  307 (360)
                      ..+++|++|++..|.    ..+..+...||+|+.|.+..|.. .+ ........+++|++|++.++. +++..+..+...
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            235788888888776    23444444577888877554442 11 222234567777777777554 445556666666


Q ss_pred             CCCCCEEEecCcC---Chhhhh-----hcC-CccceEeccccccccc
Q 018106          308 FPSLEDLFVTRCC---LPGKIK-----ISS-NQLKNLLFRSCKYLKS  345 (360)
Q Consensus       308 ~~~L~~L~L~~c~---~~~~i~-----~~~-~~L~~L~l~~c~~l~~  345 (360)
                      |++|+.|.+..+.   .++...     ... ..++.+.+.+|.+++.
T Consensus       320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~  366 (482)
T KOG1947|consen  320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTD  366 (482)
T ss_pred             CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcch
Confidence            7776666555442   233222     122 2566666666666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.78  E-value=6.4e-05  Score=75.58  Aligned_cols=30  Identities=20%  Similarity=0.329  Sum_probs=14.4

Q ss_pred             CCCEEEecCcCChhhhhhcCCccceEecccc
Q 018106          310 SLEDLFVTRCCLPGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       310 ~L~~L~L~~c~~~~~i~~~~~~L~~L~l~~c  340 (360)
                      +|+.|++++|. +..+....++|+.|+++++
T Consensus       383 ~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N  412 (788)
T PRK15387        383 GLKELIVSGNR-LTSLPVLPSELKELMVSGN  412 (788)
T ss_pred             ccceEEecCCc-ccCCCCcccCCCEEEccCC
Confidence            56666666542 2222222345566665554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.60  E-value=0.00013  Score=73.49  Aligned_cols=10  Identities=10%  Similarity=0.298  Sum_probs=5.6

Q ss_pred             CccEEEeccc
Q 018106          239 KLKIMEIRSF  248 (360)
Q Consensus       239 ~L~~L~l~~~  248 (360)
                      +|+.|++++|
T Consensus       284 sL~~L~Ls~N  293 (754)
T PRK15370        284 ELRYLSVYDN  293 (754)
T ss_pred             CCcEEECCCC
Confidence            5555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=5e-05  Score=75.78  Aligned_cols=148  Identities=15%  Similarity=0.131  Sum_probs=90.3

Q ss_pred             CCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCc---cccccCCCccEEEecccc-chhhhHhhcCCCccEE
Q 018106          191 CSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQL  265 (360)
Q Consensus       191 ~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~---~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L  265 (360)
                      .+|++|++++... .......+...+|.|+.|.+.+-.....   .-..++|+|.+|+|++++ .++..+ -.++||+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GI-S~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGI-SRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHH-hccccHHHH
Confidence            4788888888665 5566677777888888888877443222   112357888888888886 233211 256777777


Q ss_pred             EEEeecCCC-cceeeccCCCCccEEEeeccccCcH--HHH---HHhcCCCCCCEEEecCcCC----hhhhhhcCCccceE
Q 018106          266 TLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN--EFN---HLISKFPSLEDLFVTRCCL----PGKIKISSNQLKNL  335 (360)
Q Consensus       266 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~---~~~~~~~~L~~L~L~~c~~----~~~i~~~~~~L~~L  335 (360)
                      .+.+-.... .....+-++.+|+.||++.......  .+.   +....+|+|+.|+.++...    ++.+....|+|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            777322222 1223455688888888876543322  122   2233478888888887633    34444566666666


Q ss_pred             eccc
Q 018106          336 LFRS  339 (360)
Q Consensus       336 ~l~~  339 (360)
                      .+-+
T Consensus       281 ~~~~  284 (699)
T KOG3665|consen  281 AALD  284 (699)
T ss_pred             hhhh
Confidence            6543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.0001  Score=64.32  Aligned_cols=150  Identities=16%  Similarity=0.130  Sum_probs=94.7

Q ss_pred             CCccEEEEeeeeccCCC----CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCC---CCccccccCCCc
Q 018106          169 NSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG---LKHLCVSKASKL  240 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~---~~~~~i~~l~~L  240 (360)
                      ..++-|.+.+|.++..+    ....+..++.|+|.++.+ +++.+..++.+.|.|+.|+|..+.-   ++.+..+ ..+|
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p-~~nl  123 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP-LKNL  123 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc-ccce
Confidence            35566777788877655    334578899999999998 6777999999999999999986643   2333322 3699


Q ss_pred             cEEEecccc---chhhhHhhcCCCccEEEEEeecCCC---cceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCE
Q 018106          241 KIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARR---PRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLED  313 (360)
Q Consensus       241 ~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~  313 (360)
                      ++|.+.+..   .....+.-..|.++.|+++.+....   .....-..-+.+++|+..++. ..+....++...||++..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            999999887   2333444577888888877543210   000011122345555554333 223334455556666666


Q ss_pred             EEecCc
Q 018106          314 LFVTRC  319 (360)
Q Consensus       314 L~L~~c  319 (360)
                      +.+..|
T Consensus       204 v~v~e~  209 (418)
T KOG2982|consen  204 VFVCEG  209 (418)
T ss_pred             eeeecC
Confidence            666665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.35  E-value=2.7e-06  Score=68.06  Aligned_cols=150  Identities=17%  Similarity=0.112  Sum_probs=64.3

Q ss_pred             ccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCC-ccccccCCCccE
Q 018106          165 IFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK-HLCVSKASKLKI  242 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~-~~~i~~l~~L~~  242 (360)
                      ++...+++.|.|+++.+...+ ....+.+|+.|+++++.+.+-.  .-++..|+|+.|++..+.... .-...++|.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp--~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcC--hhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            344455555555555443221 3445555666666555542211  224555555555554332100 011123455555


Q ss_pred             EEecccc---chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          243 MEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       243 L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      |++..++   ..+..=.....-|+.|.+++++. +..+..++++.+|+.|.+..+++-.  +.+-+..+..|+.|+|.++
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccc
Confidence            5555443   00000001111233344442222 2233345566666666665544321  1222334555666666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.32  E-value=0.00021  Score=61.63  Aligned_cols=131  Identities=19%  Similarity=0.194  Sum_probs=79.2

Q ss_pred             cCCCCCCEEEeeeEEe---ChHHHHHHHhcCCcccEEEeecCCCCCcc----------------ccccCCCccEEEeccc
Q 018106          188 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLKHL----------------CVSKASKLKIMEIRSF  248 (360)
Q Consensus       188 ~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~----------------~i~~l~~L~~L~l~~~  248 (360)
                      ..||.|++..|+.+.+   ..+.+..++++...|+.|.+.+|.. +.+                .+.+-|.|+++....+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            4556666666666655   3466778889999999999998853 211                1123478888777655


Q ss_pred             c-ch--hhhH--hh-cCCCccEEEEEeecCCCcc-----eeeccCCCCccEEEeeccccCc---HHHHHHhcCCCCCCEE
Q 018106          249 S-EE--IEIV--EI-SVPSLQQLTLLFYGARRPR-----VVEVARSPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDL  314 (360)
Q Consensus       249 ~-~~--~~~~--~~-~~p~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L  314 (360)
                      . .+  ....  .+ +-.+|+.+++..++.....     ...+..+++|+.|+|..+.++-   ..+...+..-+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            4 11  1111  11 2257788888766553321     1223457788888887776654   2334445555677888


Q ss_pred             EecCc
Q 018106          315 FVTRC  319 (360)
Q Consensus       315 ~L~~c  319 (360)
                      .+..|
T Consensus       248 ~lnDC  252 (388)
T COG5238         248 RLNDC  252 (388)
T ss_pred             cccch
Confidence            88887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.23  E-value=0.00047  Score=69.62  Aligned_cols=180  Identities=17%  Similarity=0.111  Sum_probs=102.3

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .+..+|.  +..  .....+|..+  .++|+.|++.+|.+...+ ...+++|+.|.++++.++.  +..-+  .+.|+.|
T Consensus       178 ~~~~~L~--L~~--~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L  246 (754)
T PRK15370        178 NNKTELR--LKI--LGLTTIPACI--PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLTS--IPATL--PDTIQEM  246 (754)
T ss_pred             cCceEEE--eCC--CCcCcCCccc--ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCcccc--CChhh--hccccEE
Confidence            4556666  432  2223445433  357999999998876433 2234699999999987741  22111  3579999


Q ss_pred             EeecCCCCCccccccCCCccEEEeccccchhhhHhhc-CCCccEEEEEeecCCCcceeec-------------------c
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEIS-VPSLQQLTLLFYGARRPRVVEV-------------------A  281 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~-~p~L~~L~l~~~~~~~~~~~~~-------------------~  281 (360)
                      ++.+|.. ..+...-..+|+.|+++++.  +..+... .++|+.|+++.+.... .+..+                   .
T Consensus       247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPET  322 (754)
T ss_pred             ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCcc
Confidence            9998864 33322222589999998764  3333322 3478899888544321 11000                   1


Q ss_pred             CCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhh-hcCCccceEeccccc
Q 018106          282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCK  341 (360)
Q Consensus       282 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~-~~~~~L~~L~l~~c~  341 (360)
                      ..++|+.|++.++.++.  +...+  .++|+.|++++|.. ..+. ...++|+.|+|+++.
T Consensus       323 l~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N~  378 (754)
T PRK15370        323 LPPGLKTLEAGENALTS--LPASL--PPELQVLDVSKNQI-TVLPETLPPTITTLDVSRNA  378 (754)
T ss_pred             ccccceeccccCCcccc--CChhh--cCcccEEECCCCCC-CcCChhhcCCcCEEECCCCc
Confidence            12456666666555432  11111  25788888887632 2221 123578888887764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.23  E-value=5.8e-05  Score=65.85  Aligned_cols=128  Identities=17%  Similarity=0.155  Sum_probs=88.3

Q ss_pred             CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEE
Q 018106          189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTL  267 (360)
Q Consensus       189 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l  267 (360)
                      .+..|+.++|+++.++  .++.-..-.|.++.|+++.+.....-.+..+++|+.|+++++. .....+...+-|.+.|.+
T Consensus       282 TWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            3567889999988763  2222244579999999998865444445667899999999876 444555566778888888


Q ss_pred             EeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC
Q 018106          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (360)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~  320 (360)
                      ..+..  .....++++=.|..|++.++++..-.-.+-+.++|+|+++.|.+++
T Consensus       360 a~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            83322  1222345566788888888887553334446789999999998873

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.16  E-value=6.7e-05  Score=72.77  Aligned_cols=99  Identities=16%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             hcCCcccceEEEEeecCCCCCChhhHHHHHHHH--HHcCceEEEeec-ccCCCccccCcccccccCCccEEEEeeeeccC
Q 018106          107 CKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFEN-ITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ  183 (360)
Q Consensus       107 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~--~~~~l~~L~~~l-~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  183 (360)
                      -..+.++..|+...+..   +....+.. ++..  +....+.+.  + ......+.. |-.++...+|+.|.+.+|.+..
T Consensus        51 g~~g~~~~~f~a~~s~~---ads~vl~q-Lq~i~d~lqkt~~lk--l~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~  123 (1096)
T KOG1859|consen   51 GLSGAPVDYFRAYVSDN---ADSRVLEQ-LQRILDFLQKTKVLK--LLPSPARDPTE-PISIFPFRSLRVLELRGCDLST  123 (1096)
T ss_pred             ccCCCCCceeEEecCCc---ccchHHHH-HHHHHHHHhhheeee--ecccCCCCCCC-CceeccccceeeEEecCcchhh
Confidence            34678899998776632   23322222 2222  224555555  3 222333332 6678889999999999998764


Q ss_pred             CCCccCC-CCCCEEEeeeEEeChHHHHHHHhcC
Q 018106          184 PFDSIML-CSLKKLTLERVCLDEQMVQKLASEC  215 (360)
Q Consensus       184 ~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~c  215 (360)
                      .-+...+ .+|++|-..+   +.+.+..+++.|
T Consensus       124 ~~GL~~lr~qLe~LIC~~---Sl~Al~~v~asc  153 (1096)
T KOG1859|consen  124 AKGLQELRHQLEKLICHN---SLDALRHVFASC  153 (1096)
T ss_pred             hhhhHHHHHhhhhhhhhc---cHHHHHHHHHHh
Confidence            3222222 2455554333   234455555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.11  E-value=0.0013  Score=66.39  Aligned_cols=139  Identities=21%  Similarity=0.112  Sum_probs=89.6

Q ss_pred             ccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCC
Q 018106          159 YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKAS  238 (360)
Q Consensus       159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~  238 (360)
                      ..+|..+.  ++|+.|.+.++.+..-+  ...++|++|.++++.++.  +.   ...++|++|++.+|. +..+... .+
T Consensus       214 tsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~Lp~l-p~  282 (788)
T PRK15387        214 TTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHLPAL-PS  282 (788)
T ss_pred             CcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhhhhhc-hh
Confidence            35665443  47999999998876532  345899999999987742  11   124789999998875 3332221 25


Q ss_pred             CccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106          239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (360)
Q Consensus       239 ~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~  318 (360)
                      +|+.|.+.++.  +..+....|+|+.|+++.+.... .+   ...++|+.|.+.++.++.  +..   ..++|++|+|++
T Consensus       283 ~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~-Lp---~lp~~L~~L~Ls~N~L~~--LP~---lp~~Lq~LdLS~  351 (788)
T PRK15387        283 GLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS-LP---ALPSELCKLWAYNNQLTS--LPT---LPSGLQELSVSD  351 (788)
T ss_pred             hcCEEECcCCc--cccccccccccceeECCCCcccc-CC---CCcccccccccccCcccc--ccc---cccccceEecCC
Confidence            88999998874  44444456889999998554322 11   123467788887776643  111   124788888887


Q ss_pred             c
Q 018106          319 C  319 (360)
Q Consensus       319 c  319 (360)
                      |
T Consensus       352 N  352 (788)
T PRK15387        352 N  352 (788)
T ss_pred             C
Confidence            6

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.07  E-value=0.00017  Score=61.81  Aligned_cols=103  Identities=24%  Similarity=0.142  Sum_probs=74.2

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCC--CCcc-ccccCCCccE
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG--LKHL-CVSKASKLKI  242 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~-~i~~l~~L~~  242 (360)
                      ....|+.|++.++.+.+......+|+||+|.++.+.. ...++..++..||+|++|+++++..  +.++ ....+++|++
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            3567888888888877665677889999999999844 3345666678889999999998753  1221 1234578899


Q ss_pred             EEecccc-----chhhhHhhcCCCccEEEEEe
Q 018106          243 MEIRSFS-----EEIEIVEISVPSLQQLTLLF  269 (360)
Q Consensus       243 L~l~~~~-----~~~~~~~~~~p~L~~L~l~~  269 (360)
                      |.+..|.     +.-+.+..-+|+|++|+-.+
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            9999887     33445556778888887763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.05  E-value=0.00019  Score=73.63  Aligned_cols=200  Identities=17%  Similarity=0.171  Sum_probs=94.2

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  220 (360)
                      +.++.|+  +.. ......+|..+...-+|++|++.+..+..-+ ....+..|.+|++..+..- ..+..+....++|++
T Consensus       571 ~~LrVLD--Ls~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  571 PLLRVLD--LSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLRV  646 (889)
T ss_pred             cceEEEE--CCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc-ccccchhhhcccccE
Confidence            4555666  332 3345667777777777777777776665332 3445566667777665431 112344555777888


Q ss_pred             EEeecCC-CCCcc---ccccCCCccEEEeccccchhhhHhhcCCCccEEEEEee---cCCCcceeeccCCCCccEEEeec
Q 018106          221 LCFSNCW-GLKHL---CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFY---GARRPRVVEVARSPHLKKLDLVS  293 (360)
Q Consensus       221 L~l~~c~-~~~~~---~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~  293 (360)
                      |.+.... ..+..   .+..+.+|+.+.+..+...+..-....++|.++.....   .........+..+.+|+.|.+.+
T Consensus       647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~  726 (889)
T KOG4658|consen  647 LRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD  726 (889)
T ss_pred             EEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence            8776543 11111   12234555555554333100000122233332222211   11112233456778888888876


Q ss_pred             cccCcHHHH---H-Hhc-CCCCCCEEEecCcCChhhhh--hcCCccceEeccccccccc
Q 018106          294 VYFADNEFN---H-LIS-KFPSLEDLFVTRCCLPGKIK--ISSNQLKNLLFRSCKYLKS  345 (360)
Q Consensus       294 ~~~~~~~~~---~-~~~-~~~~L~~L~L~~c~~~~~i~--~~~~~L~~L~l~~c~~l~~  345 (360)
                      +.+.+....   . ... .|+++..+.+.+|.......  .-.|+|+.|.+..|..+.+
T Consensus       727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~  785 (889)
T KOG4658|consen  727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED  785 (889)
T ss_pred             CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence            655321110   0 000 24444444444443322221  3345566666655554444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.03  E-value=0.0061  Score=62.83  Aligned_cols=148  Identities=21%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCccc--cccCCCccEEEe
Q 018106          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEI  245 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~l~~L~~L~l  245 (360)
                      ...+.+++.++.+........+|.|++|-+.++.. -...-..++...|.|..|++++|.....++  |+.+-+||.|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            56677777776665544566777888888887752 111122346678889999998877666543  445667888877


Q ss_pred             ccccchhhhHhhc---CCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecC
Q 018106          246 RSFSEEIEIVEIS---VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTR  318 (360)
Q Consensus       246 ~~~~~~~~~~~~~---~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~  318 (360)
                      .++.  +..++..   +..|.+|++...+...........+++|++|.+.... -.+.....-+..+.+|+.|++..
T Consensus       603 ~~t~--I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  603 SDTG--ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cCCC--ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            7764  3333322   2244455554322222222223346777777775543 22222222234445555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.00  E-value=0.00023  Score=47.66  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=20.0

Q ss_pred             ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +..+++|+.|+++++.++.- ....+..+++|++|++++|
T Consensus        21 f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             HcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            34555666666655554331 1223455566666666554

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.89  E-value=0.00017  Score=65.17  Aligned_cols=59  Identities=22%  Similarity=0.307  Sum_probs=38.1

Q ss_pred             ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC---ChhhhhhcCCccceEeccc
Q 018106          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC---LPGKIKISSNQLKNLLFRS  339 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~---~~~~i~~~~~~L~~L~l~~  339 (360)
                      ++.+|+|++|+++++.++.-. ...+.+...|+.|.|..+.   ..+.+......|+.|++.+
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~  331 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD  331 (498)
T ss_pred             HhhcccceEeccCCCccchhh-hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence            567888899999888776532 3335666777777777751   1223345566777777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.00016  Score=61.96  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=16.0

Q ss_pred             cCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          281 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      .++|+|++|.++++.+.+-.-..-+..+++|..|++.+|
T Consensus        88 e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   88 EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             hhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence            334444444444444433111112333444445555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.76  E-value=0.00036  Score=46.69  Aligned_cols=56  Identities=25%  Similarity=0.132  Sum_probs=25.8

Q ss_pred             CccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecC
Q 018106          170 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC  226 (360)
Q Consensus       170 ~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  226 (360)
                      +|++|.+.+|.+..-.  ....+++|++|.++++.+..-.- ..+.++|+|++|++.+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence            4555555555443211  23445555555555554421111 12445555555555554

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.70  E-value=0.00054  Score=68.35  Aligned_cols=122  Identities=22%  Similarity=0.174  Sum_probs=65.5

Q ss_pred             cCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeC-hHHHHHHHhcCCcccEEEeecCCCCCccc--cccCCCccE
Q 018106          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKI  242 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~l~~L~~  242 (360)
                      .+.|+.|.+.++.+.+..  ...++++||.|+|+++++. -.+  ..+...+.||+|.|+++. ++.+.  +..++.|+.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHT  434 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH--HHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHH
Confidence            467888888887776554  4567788888888888663 111  124556778888887764 33222  233455555


Q ss_pred             EEeccccchhhhH--hhcCCCccEEEEEeecCCCc-ceeeccCCCCccEEEeeccc
Q 018106          243 MEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVY  295 (360)
Q Consensus       243 L~l~~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~  295 (360)
                      |...++.  +..+  ....|.|+.++++.+..... ....... |+|++|+++|+.
T Consensus       435 L~ahsN~--l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  435 LRAHSNQ--LLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             HhhcCCc--eeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            5443332  1111  12455666666663332111 1111111 666666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.62  E-value=0.0049  Score=57.33  Aligned_cols=27  Identities=26%  Similarity=0.443  Sum_probs=12.4

Q ss_pred             CcccEEEeecCCCCCccccccCCCccEEEec
Q 018106          216 PLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (360)
Q Consensus       216 p~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~  246 (360)
                      +.|++|.+.+|..+..+  .  ++|+.|.+.
T Consensus        94 ~nLe~L~Ls~Cs~L~sL--P--~sLe~L~L~  120 (426)
T PRK15386         94 EGLEKLTVCHCPEISGL--P--ESVRSLEIK  120 (426)
T ss_pred             hhhhheEccCccccccc--c--cccceEEeC
Confidence            35555555555333221  1  345555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.61  E-value=4e-05  Score=61.46  Aligned_cols=129  Identities=18%  Similarity=0.121  Sum_probs=71.0

Q ss_pred             CcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEe--ChHHHHHHHhcCCcccEEEeecCCCCCccccc--
Q 018106          161 LPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS--  235 (360)
Q Consensus       161 l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~--  235 (360)
                      +|.-+....+|+.|++.++.+...+ ....+|.|+.|++..++.  ...+    ++.+|.||.|++.++..-.. .+.  
T Consensus        48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg----fgs~p~levldltynnl~e~-~lpgn  122 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG----FGSFPALEVLDLTYNNLNEN-SLPGN  122 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc----cCCCchhhhhhccccccccc-cCCcc
Confidence            3444555667777777777665433 455667777777766554  1122    45567777777776543111 111  


Q ss_pred             --cCCCccEEEeccccchhhhHh---hcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106          236 --KASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (360)
Q Consensus       236 --~l~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (360)
                        .+..|+.|.+..+.  ++.+.   -...+|+.|.+.+++. -..+..++.+..|+.|+|.++.++
T Consensus       123 ff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  123 FFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceee
Confidence              12456666665553  22221   1344555555553332 233445667778888888877654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.38  E-value=0.0036  Score=51.80  Aligned_cols=82  Identities=18%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             ccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCC-----ccccccCC
Q 018106          167 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLK-----HLCVSKAS  238 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~-----~~~i~~l~  238 (360)
                      ..+.|..|.+.++++..-.  ....+|+|+.|.|.++++ .-.+++. +..||+|++|.+.++..-+     ...+-.+|
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecC
Confidence            4678999999998875332  456789999999999887 4455655 5779999999998876422     23334578


Q ss_pred             CccEEEecccc
Q 018106          239 KLKIMEIRSFS  249 (360)
Q Consensus       239 ~L~~L~l~~~~  249 (360)
                      +|+.|++....
T Consensus       141 ~l~~LDF~kVt  151 (233)
T KOG1644|consen  141 SLRTLDFQKVT  151 (233)
T ss_pred             cceEeehhhhh
Confidence            99999888665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.34  E-value=0.0042  Score=53.79  Aligned_cols=190  Identities=15%  Similarity=0.093  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHH--cCceEEEeecccCCCccccCc-------ccccccCCccEEEEeeeeccCCC------CccCCCCCC
Q 018106          130 PIVDRWIRLAVE--NGVRELDFENITDENTVYTLP-------QAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLK  194 (360)
Q Consensus       130 ~~~~~~l~~~~~--~~l~~L~~~l~~~~~~~~~l~-------~~l~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~  194 (360)
                      .....|+...++  ++++...|+-.+.......++       ..+..||+|+..+|+.+.+.+.+      ....-.+|+
T Consensus        44 tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~  123 (388)
T COG5238          44 TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLV  123 (388)
T ss_pred             HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCce
Confidence            356678776554  667777743333333333333       35667999999999999887654      334557899


Q ss_pred             EEEeeeEEeChH-------HHHH-----HHhcCCcccEEEeecCCCCCc----cc--cccCCCccEEEecccc---chhh
Q 018106          195 KLTLERVCLDEQ-------MVQK-----LASECPLLEDLCFSNCWGLKH----LC--VSKASKLKIMEIRSFS---EEIE  253 (360)
Q Consensus       195 ~L~L~~~~~~~~-------~l~~-----l~~~cp~Le~L~l~~c~~~~~----~~--i~~l~~L~~L~l~~~~---~~~~  253 (360)
                      +|.+++|..+.-       .+..     -+..-|.||......+.....    +.  +.+-..|+.+.|..+.   .++.
T Consensus       124 HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~  203 (388)
T COG5238         124 HLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT  203 (388)
T ss_pred             eEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH
Confidence            999999976321       1111     245678899888665533111    11  1122689999998765   2223


Q ss_pred             hHh----hcCCCccEEEEEeecCCCc----ceeeccCCCCccEEEeeccccCcHHHHHHhc-----CCCCCCEEEecCc
Q 018106          254 IVE----ISVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLVSVYFADNEFNHLIS-----KFPSLEDLFVTRC  319 (360)
Q Consensus       254 ~~~----~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~L~~c  319 (360)
                      .+.    ..+.+|+.|++.++.....    ....+..-++|+.|.+..+-++......++.     .+|+|..|-...+
T Consensus       204 ~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         204 MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence            332    3678899999985544221    1222344567899999877665543333332     3689999988887

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.26  E-value=0.0033  Score=59.20  Aligned_cols=79  Identities=19%  Similarity=0.081  Sum_probs=38.1

Q ss_pred             CCccEEEEeeeeccCCCCccC-C-CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccc-cCCCccEEEe
Q 018106          169 NSVTNLRLVWCRLEQPFDSIM-L-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIMEI  245 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~~~~~-~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-~l~~L~~L~l  245 (360)
                      +.++.|.+.++.+..-..... . ++|+.|+++++.+..-.  .-+..+|.|+.|++.+|......... ..+.|+.|.+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            445666666555443322222 2 25666666665543211  12445666666666665432222221 3356666666


Q ss_pred             cccc
Q 018106          246 RSFS  249 (360)
Q Consensus       246 ~~~~  249 (360)
                      +++.
T Consensus       194 s~N~  197 (394)
T COG4886         194 SGNK  197 (394)
T ss_pred             cCCc
Confidence            6553

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.06  E-value=0.02  Score=53.43  Aligned_cols=71  Identities=17%  Similarity=0.164  Sum_probs=39.8

Q ss_pred             CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEE
Q 018106          189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL  268 (360)
Q Consensus       189 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~  268 (360)
                      .++++++|.+++|.+.  .+..   --++|++|.+.+|..+..+.-.-.++|++|.+.+|. .+..+   .+.|+.|.+.
T Consensus        50 ~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~L~  120 (426)
T PRK15386         50 EARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLEIK  120 (426)
T ss_pred             HhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEEeC
Confidence            3677888888777432  1111   123588888877766544331112478888887774 23222   2356666665

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.02  E-value=0.01  Score=31.94  Aligned_cols=25  Identities=48%  Similarity=0.832  Sum_probs=22.0

Q ss_pred             CCCEEEeeeEEe-ChHHHHHHHhcCC
Q 018106          192 SLKKLTLERVCL-DEQMVQKLASECP  216 (360)
Q Consensus       192 ~L~~L~L~~~~~-~~~~l~~l~~~cp  216 (360)
                      +||+|.|.++.+ ++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            489999999998 5558999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.88  E-value=0.0023  Score=56.68  Aligned_cols=39  Identities=28%  Similarity=0.611  Sum_probs=36.0

Q ss_pred             ccccccccCCc----hHHHHHHhcCCChhhhhhhcccccchhh
Q 018106           14 VVAMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQ   52 (360)
Q Consensus        14 ~~~~d~i~~LP----d~iL~~I~s~L~~~~~~~~~~vskrW~~   52 (360)
                      +-+.|-|..||    |+|-+.||+||+..+++.|..|||+|++
T Consensus        69 mLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   69 MLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            33579999999    9999999999999999999999999985

>PLN03150 hypothetical protein; Provisional

Probab=95.78  E-value=0.02  Score=57.31  Aligned_cols=79  Identities=16%  Similarity=0.067  Sum_probs=45.0

Q ss_pred             ccEEEecccc--chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEec
Q 018106          240 LKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT  317 (360)
Q Consensus       240 L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~  317 (360)
                      ++.|.+.++.  ..+..-...+++|+.|+++.+......+..+..+++|+.|+|+++.+.... ...+..+++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECc
Confidence            5566666554  111112225566777777655444444445666777777777766665432 3335566777777777


Q ss_pred             Cc
Q 018106          318 RC  319 (360)
Q Consensus       318 ~c  319 (360)
                      +|
T Consensus       499 ~N  500 (623)
T PLN03150        499 GN  500 (623)
T ss_pred             CC
Confidence            66

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.71  E-value=0.016  Score=51.01  Aligned_cols=53  Identities=17%  Similarity=0.215  Sum_probs=26.2

Q ss_pred             CCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc--CChhhhhhcCCccceEec
Q 018106          282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC--CLPGKIKISSNQLKNLLF  337 (360)
Q Consensus       282 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c--~~~~~i~~~~~~L~~L~l  337 (360)
                      -.|.++.|+++.+.+..-  .. +..+++|..|+|+++  ..++.......+.|.|.+
T Consensus       305 L~Pkir~L~lS~N~i~~v--~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTV--QN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hccceeEEeccccceeee--hh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            345666666655554331  11 445566666666665  222333334445555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.61  E-value=0.0017  Score=56.42  Aligned_cols=96  Identities=20%  Similarity=0.193  Sum_probs=55.4

Q ss_pred             CccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106          239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (360)
Q Consensus       239 ~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~  318 (360)
                      +.+.|+.++|.-.-..+....|.|+.|.++-+..  .....+..|.+|++|.|.-+.+.+-.-.+.+.++|+|++|-|..
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            4555555555312222333566677766663322  11223456777888877777776644455677788888887777


Q ss_pred             cCChh--------hhhhcCCccceEe
Q 018106          319 CCLPG--------KIKISSNQLKNLL  336 (360)
Q Consensus       319 c~~~~--------~i~~~~~~L~~L~  336 (360)
                      |+...        .+....|+|++|+
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            63221        2334567777776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.49  E-value=0.00019  Score=65.13  Aligned_cols=47  Identities=26%  Similarity=0.235  Sum_probs=22.5

Q ss_pred             ccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEe
Q 018106          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL  203 (360)
Q Consensus       157 ~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~  203 (360)
                      ....++..++++..|..|+..++.+...+ ....+..|..|.+.++.+
T Consensus       125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l  172 (565)
T KOG0472|consen  125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL  172 (565)
T ss_pred             ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch
Confidence            33445555555555555555555543322 223344455555544443

>PLN03150 hypothetical protein; Provisional

Probab=95.46  E-value=0.033  Score=55.69  Aligned_cols=103  Identities=17%  Similarity=0.080  Sum_probs=66.0

Q ss_pred             ccEEEeecCCCCCc--cccccCCCccEEEecccc--chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106          218 LEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (360)
Q Consensus       218 Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (360)
                      ++.|+|.++...+.  ..+..+++|+.|+++++.  ..+......+++|+.|+++.+......+..+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56666666543222  224456888888888775  12222234678888888886666555666677888888888888


Q ss_pred             cccCcHHHHHHhcCCCCCCEEEecCcC
Q 018106          294 VYFADNEFNHLISKFPSLEDLFVTRCC  320 (360)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~  320 (360)
                      +.+.......+.....++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            877655444433334566777777764

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.46  E-value=0.0064  Score=53.53  Aligned_cols=36  Identities=17%  Similarity=0.406  Sum_probs=31.3

Q ss_pred             cccccCCchHHHHHHhcC-----CChhhhhhhcccccchhh
Q 018106           17 MDRISELPTFIIHHLMSY-----LSAKEVARTSVLSKKWNQ   52 (360)
Q Consensus        17 ~d~i~~LPd~iL~~I~s~-----L~~~~~~~~~~vskrW~~   52 (360)
                      .+.|..||||||..||..     ++.+++.++|+|||.|+.
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            356889999999999974     567999999999999984

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.34  E-value=0.024  Score=34.98  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=21.9

Q ss_pred             CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ++|++|+++++.+++  +...+..+++|++|++++|
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            467777777777764  3333567777888877776

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.33  E-value=0.0036  Score=51.82  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             ccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCccccc---cCCCccEEE
Q 018106          171 VTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS---KASKLKIME  244 (360)
Q Consensus       171 L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~---~l~~L~~L~  244 (360)
                      ++.++-+++.+...+  ....++.++.|.+.+|.. ++..++.+....|+|+.|+|++|..+++..+.   .+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            444444444443332  445677788888888876 77778877777888888888888777654432   356777776


Q ss_pred             ecccc
Q 018106          245 IRSFS  249 (360)
Q Consensus       245 l~~~~  249 (360)
                      +.+-.
T Consensus       183 l~~l~  187 (221)
T KOG3864|consen  183 LYDLP  187 (221)
T ss_pred             hcCch
Confidence            66433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.28  E-value=0.015  Score=48.25  Aligned_cols=103  Identities=22%  Similarity=0.196  Sum_probs=54.5

Q ss_pred             CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc-cc-ccCCCccEEEecccc-chhhhH--hhcCCCccEE
Q 018106          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CV-SKASKLKIMEIRSFS-EEIEIV--EISVPSLQQL  265 (360)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i-~~l~~L~~L~l~~~~-~~~~~~--~~~~p~L~~L  265 (360)
                      .+...+.|+++.+..  + ..+.+.|.|..|.+.++.....- .+ .-+|+|+.|.+.+++ ..+..+  ...||.|++|
T Consensus        42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            455666666665421  1 12456777778887776542210 01 124778888877764 222222  1367777777


Q ss_pred             EEEeecCC---CcceeeccCCCCccEEEeecccc
Q 018106          266 TLLFYGAR---RPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       266 ~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      .+-++...   .+-...+..+|+|+.|+.....-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            77643321   12222345667777777765443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.16  E-value=0.016  Score=54.59  Aligned_cols=167  Identities=20%  Similarity=0.133  Sum_probs=105.3

Q ss_pred             cCceEEEeecccCCCccccCcccccccC-CccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSAN-SVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~-~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      ..+..+.  +.  ......++......+ +|+.|++.++.+.... ....+++|+.|.++.+.+.+-.  ......+.|+
T Consensus       116 ~~l~~L~--l~--~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~  189 (394)
T COG4886         116 TNLTSLD--LD--NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLN  189 (394)
T ss_pred             cceeEEe--cC--CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhh
Confidence            3566666  42  333455555555554 8999999999887642 4678999999999999864322  2233689999


Q ss_pred             EEEeecCCCCCccccc--cCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          220 DLCFSNCWGLKHLCVS--KASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       220 ~L~l~~c~~~~~~~i~--~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      .|++.++.. ..+...  ....|+.|.+.+.. .......-...++..+.+..... ......++.+++++.|++.++.+
T Consensus       190 ~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         190 NLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             heeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceeccccccc
Confidence            999998764 333221  22348888888773 11111122344555555331111 11134457778899999988877


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ++...   +....+|+.|+++++
T Consensus       268 ~~i~~---~~~~~~l~~L~~s~n  287 (394)
T COG4886         268 SSISS---LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccc---ccccCccCEEeccCc
Confidence            66322   667788999999875

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.0014  Score=56.80  Aligned_cols=80  Identities=15%  Similarity=0.095  Sum_probs=56.9

Q ss_pred             cccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCC-------ccccccC
Q 018106          166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLK-------HLCVSKA  237 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~-------~~~i~~l  237 (360)
                      ...+.|+.|.|+-+.+........|.+|+.|.|..+.+ +-+.+.. +.+.|+|+.|+|..+.-.+       ...+..+
T Consensus        38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L  116 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL  116 (388)
T ss_pred             HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence            34678888888888777655567788999999988887 4455553 7888999999997654322       2333457


Q ss_pred             CCccEEEec
Q 018106          238 SKLKIMEIR  246 (360)
Q Consensus       238 ~~L~~L~l~  246 (360)
                      |+|+.|+=.
T Consensus       117 PnLkKLDnv  125 (388)
T KOG2123|consen  117 PNLKKLDNV  125 (388)
T ss_pred             ccchhccCc
Confidence            888887644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.74  E-value=0.017  Score=35.60  Aligned_cols=35  Identities=29%  Similarity=0.269  Sum_probs=21.9

Q ss_pred             CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCC
Q 018106          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (360)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  227 (360)
                      ++|++|.++++.+++  +...+..+|+|+.|++.+|.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            467777777776642  33336778888888887774

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.54  E-value=0.00058  Score=62.10  Aligned_cols=89  Identities=18%  Similarity=0.123  Sum_probs=43.7

Q ss_pred             ccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccc
Q 018106          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS  235 (360)
Q Consensus       157 ~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~  235 (360)
                      .-..+|..++.+.+|..|.+.++.+...+ ....+..|++|+...+-.+  .+..=+++..+|+.|++..+....--.+.
T Consensus       148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~lPef~  225 (565)
T KOG0472|consen  148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRFLPEFP  225 (565)
T ss_pred             ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhcccccCCCCC
Confidence            34566667777777777777776654332 1223556666666555331  11111334445555555544322222233


Q ss_pred             cCCCccEEEecc
Q 018106          236 KASKLKIMEIRS  247 (360)
Q Consensus       236 ~l~~L~~L~l~~  247 (360)
                      +|..|+.|++..
T Consensus       226 gcs~L~Elh~g~  237 (565)
T KOG0472|consen  226 GCSLLKELHVGE  237 (565)
T ss_pred             ccHHHHHHHhcc
Confidence            344444444443

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.36  E-value=0.023  Score=52.28  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             cccCCchHHHHHHhcCCC-hhhhhhhcccccchhhhhcc
Q 018106           19 RISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVS   56 (360)
Q Consensus        19 ~i~~LPd~iL~~I~s~L~-~~~~~~~~~vskrW~~l~~~   56 (360)
                      ..+.||+|+|..|.++|+ .-|++|.+.|||.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            467899999999999997 88999999999999986543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=94.02  E-value=0.015  Score=53.04  Aligned_cols=46  Identities=20%  Similarity=0.152  Sum_probs=30.1

Q ss_pred             cccCcccccc-cCCccEEEEeeeeccCCC--CccCCCCCCEEEeee-EEe
Q 018106          158 VYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLER-VCL  203 (360)
Q Consensus       158 ~~~l~~~l~~-~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~-~~~  203 (360)
                      -..+|...|+ .++|+.|+|+++.+..-.  ...++++|.+|.+.+ +.+
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            3456665565 688999999998765322  445667777777666 444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.63  E-value=0.0077  Score=57.16  Aligned_cols=100  Identities=20%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             ccccCCccEEEEeeeeccCCCC-ccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccE
Q 018106          165 IFSANSVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKI  242 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~  242 (360)
                      +....+|+.|++..+.+..... ...+++|++|.++++.+ +..++.    .++.|+.|++.++.....-....+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhhc
Confidence            3445777778877777665443 55677888888888776 333333    34448888887776543333344567777


Q ss_pred             EEecccc-chhhhH-hhcCCCccEEEEE
Q 018106          243 MEIRSFS-EEIEIV-EISVPSLQQLTLL  268 (360)
Q Consensus       243 L~l~~~~-~~~~~~-~~~~p~L~~L~l~  268 (360)
                      +++.++. ..++.. ....++++.+.+.
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~  194 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLG  194 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhcc
Confidence            7777665 111111 2345566666665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.47  E-value=0.013  Score=57.49  Aligned_cols=145  Identities=21%  Similarity=0.197  Sum_probs=73.7

Q ss_pred             cCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeec-----------CCC----
Q 018106          168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSN-----------CWG----  228 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~-----------c~~----  228 (360)
                      .++++.|++-...-..+.   ....|..|++|.+.+|.+ .-.++..+-   .+||+|.=.+           |.+    
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH---HhhhhhhhhccHHHHHHHHHHhcccccc
Confidence            466777777665433332   455788999999999988 434444432   3455553221           211    


Q ss_pred             -CCc--ccc---------------ccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEE
Q 018106          229 -LKH--LCV---------------SKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLD  290 (360)
Q Consensus       229 -~~~--~~i---------------~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  290 (360)
                       ..+  +..               .=+|.|++|+++.+...-......+|.|++|+++.+....-.......|. |..|.
T Consensus       160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeee
Confidence             000  000               01366667777665411111223667777777774443322222233333 66666


Q ss_pred             eeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          291 LVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      |.++.++.  +.. +.++.+|+.|+++.|
T Consensus       239 lrnN~l~t--L~g-ie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  239 LRNNALTT--LRG-IENLKSLYGLDLSYN  264 (1096)
T ss_pred             ecccHHHh--hhh-HHhhhhhhccchhHh
Confidence            66555433  111 344556666666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=0.051  Score=45.19  Aligned_cols=69  Identities=22%  Similarity=0.248  Sum_probs=50.7

Q ss_pred             eccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCChhhhh----hcCCccceEeccccccccccc
Q 018106          279 EVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKSAL  347 (360)
Q Consensus       279 ~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~----~~~~~L~~L~l~~c~~l~~~~  347 (360)
                      .+.+++.++.|.+..+. +.+..+..+....|+|+.|+|++|+.+++-.    ...++|+.|.+.+.+.+...+
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~e  193 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANLE  193 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhchH
Confidence            35677888888887665 6667777777778999999999996655432    467888888888877665543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=92.37  E-value=0.018  Score=54.95  Aligned_cols=134  Identities=20%  Similarity=0.147  Sum_probs=77.7

Q ss_pred             cCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc-cccccCC
Q 018106          160 TLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKAS  238 (360)
Q Consensus       160 ~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~-~~i~~l~  238 (360)
                      .+|..+.....|++|+|+.+.+...+...++--|+.|.++++.++.-..+  +..-+.|..|+...|+.... -.+..+.
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~--ig~~~tl~~ld~s~nei~slpsql~~l~  189 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE--IGLLPTLAHLDVSKNEIQSLPSQLGYLT  189 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc--cccchhHHHhhhhhhhhhhchHHhhhHH
Confidence            34445566677777777777766554444444588888877776211111  22456777777777654321 1223456


Q ss_pred             CccEEEeccccchhhhHh--hcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCc
Q 018106          239 KLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  298 (360)
Q Consensus       239 ~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  298 (360)
                      +|+.|.+..+.  +..+.  +..-.|..|+++ |+.....++.+..+..|++|-|.++-+..
T Consensus       190 slr~l~vrRn~--l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  190 SLRDLNVRRNH--LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHHHHHhhhh--hhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCC
Confidence            77777776654  22221  112236777777 55555566667777777777777665544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=91.23  E-value=0.012  Score=56.17  Aligned_cols=179  Identities=18%  Similarity=0.085  Sum_probs=109.2

Q ss_pred             CCccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCC-Ccc
Q 018106          155 ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL-KHL  232 (360)
Q Consensus       155 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-~~~  232 (360)
                      ....-.+|.....+..|+.+.|+.+.+-.-. ....+..|+.|+|+.+.++.-...  +..|| |+.|.+.++... ...
T Consensus        84 rNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lp-Lkvli~sNNkl~~lp~  160 (722)
T KOG0532|consen   84 RNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLP-LKVLIVSNNKLTSLPE  160 (722)
T ss_pred             ccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCc-ceeEEEecCccccCCc
Confidence            4445566666667778888888875543221 344566777888888776322222  34466 888888876531 123


Q ss_pred             ccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCC
Q 018106          233 CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (360)
Q Consensus       233 ~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  311 (360)
                      .+..+++|..|+++.|. ..+..-......|+.|.+..+.. ..++..+. .--|..|+++++.+..  +..-+..+..|
T Consensus       161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~L  236 (722)
T KOG0532|consen  161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHL  236 (722)
T ss_pred             ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHh-CCceeeeecccCceee--cchhhhhhhhh
Confidence            34456899999998886 22222223444566666653332 23333444 3457779998888754  34446788999


Q ss_pred             CEEEecCcCCh---hhhhhc--CCccceEecccc
Q 018106          312 EDLFVTRCCLP---GKIKIS--SNQLKNLLFRSC  340 (360)
Q Consensus       312 ~~L~L~~c~~~---~~i~~~--~~~L~~L~l~~c  340 (360)
                      ++|.|.+|+.-   ..|...  -+=+|+|++.-|
T Consensus       237 q~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  237 QVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            99999998432   333332  234788888877

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.94  E-value=0.26  Score=37.98  Aligned_cols=11  Identities=27%  Similarity=0.640  Sum_probs=5.3

Q ss_pred             cCCCCccEEEe
Q 018106          281 ARSPHLKKLDL  291 (360)
Q Consensus       281 ~~~~~L~~L~l  291 (360)
                      ..+++|+.+.+
T Consensus        78 ~~~~~l~~i~~   88 (129)
T PF13306_consen   78 SNCTNLKNIDI   88 (129)
T ss_dssp             TT-TTECEEEE
T ss_pred             ccccccccccc
Confidence            34555555555

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=90.11  E-value=0.12  Score=50.47  Aligned_cols=42  Identities=26%  Similarity=0.547  Sum_probs=37.9

Q ss_pred             hcccccccccCCchHHHHHHhcCCChhhhhhhcccccchhhh
Q 018106           12 ETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (360)
Q Consensus        12 ~~~~~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l   53 (360)
                      .+....|.++.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus       100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            345568999999999999999999999999999999999853

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=89.90  E-value=0.039  Score=52.37  Aligned_cols=125  Identities=22%  Similarity=0.095  Sum_probs=79.7

Q ss_pred             ccCCccEEEEeeeeccC-CCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEe
Q 018106          167 SANSVTNLRLVWCRLEQ-PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l  245 (360)
                      .+..++.+.+..+.+.. ......+.+|+.|.+.++.+.  .+...+..+++|+.|++.++.......+..++.|+.|.+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence            34555566666555543 223567889999999998762  222225678999999999987655556666778999999


Q ss_pred             ccccchhhhHhh--cCCCccEEEEEeecCCCcce-eeccCCCCccEEEeecccc
Q 018106          246 RSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       246 ~~~~~~~~~~~~--~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~  296 (360)
                      .++.  +..+.-  ..++|+.++++.+....-.. . ...+.+++.+.+.++.+
T Consensus       148 ~~N~--i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  148 SGNL--ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             ccCc--chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            8885  322221  26677777777443322111 1 35677777777766543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.60  E-value=0.22  Score=26.59  Aligned_cols=19  Identities=16%  Similarity=0.333  Sum_probs=14.5

Q ss_pred             CCccceEeccccccccccc
Q 018106          329 SNQLKNLLFRSCKYLKSAL  347 (360)
Q Consensus       329 ~~~L~~L~l~~c~~l~~~~  347 (360)
                      |++|+.|+|.+|.++++.+
T Consensus         1 c~~L~~L~l~~C~~itD~g   19 (26)
T smart00367        1 CPNLRELDLSGCTNITDEG   19 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHH
Confidence            5678888888888887754

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.28  E-value=0.35  Score=25.81  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=11.2

Q ss_pred             CCCCCEEEeeeEE-eChHHHHHH
Q 018106          190 LCSLKKLTLERVC-LDEQMVQKL  211 (360)
Q Consensus       190 ~~~L~~L~L~~~~-~~~~~l~~l  211 (360)
                      ||+|++|+|++|. +++.++..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            3455555555554 355555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.71  E-value=0.36  Score=25.11  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=13.4

Q ss_pred             CCCCCEEEeeeEEeChHHHHHH
Q 018106          190 LCSLKKLTLERVCLDEQMVQKL  211 (360)
Q Consensus       190 ~~~L~~L~L~~~~~~~~~l~~l  211 (360)
                      +++|++|+|+++.++++++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3677777777777776766654

...

>PF13013 F-box-like_2: F-box-like domain

Probab=84.58  E-value=0.5  Score=35.41  Aligned_cols=30  Identities=13%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             cccCCchHHHHHHhcCCChhhhhhhccccc
Q 018106           19 RISELPTFIIHHLMSYLSAKEVARTSVLSK   48 (360)
Q Consensus        19 ~i~~LPd~iL~~I~s~L~~~~~~~~~~vsk   48 (360)
                      .+.+||+|++..||.+-...+...+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            488899999999999999999988887776

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=81.39  E-value=0.43  Score=41.31  Aligned_cols=51  Identities=10%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             cccccCCchHHHHHHhcCCC-hhhhhhhcccccch------hhhhcccceEEeeCCCc
Q 018106           17 MDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKW------NQLYVSFPILDFDQNYF   67 (360)
Q Consensus        17 ~d~i~~LPd~iL~~I~s~L~-~~~~~~~~~vskrW------~~l~~~~~~l~~~~~~~   67 (360)
                      +-.+.+||.+++..|+.+++ -+|++.+++|--.-      +.+|+.+-.++|+...+
T Consensus       199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi  256 (332)
T KOG3926|consen  199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI  256 (332)
T ss_pred             CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            56789999999999999999 99999999882221      36788777767766553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=80.49  E-value=1.7  Score=33.21  Aligned_cols=11  Identities=18%  Similarity=0.519  Sum_probs=3.6

Q ss_pred             cCCCCccEEEee
Q 018106          281 ARSPHLKKLDLV  292 (360)
Q Consensus       281 ~~~~~L~~L~l~  292 (360)
                      .++ +|+.+.+.
T Consensus       101 ~~~-~l~~i~~~  111 (129)
T PF13306_consen  101 SNC-NLKEINIP  111 (129)
T ss_dssp             TT--T--EEE-T
T ss_pred             cCC-CceEEEEC
Confidence            444 55555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	9e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 58/346 (16%), Positives = 113/346 (32%), Gaps = 71/346 (20%)

Query: 20  ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSF 79
              LP  ++  + S L   E+ + S + K+W +L  S   L                   
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESL-----------------WQ 50

Query: 80  CVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA 139
            +     +    V   +            L   +  FR   +F+D   +       ++  
Sbjct: 51  TLDLTGKNLHPDVTGRL------------LSQGVIAFRCPRSFMDQPLAEHFSPFRVQH- 97

Query: 140 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIM-----LCSLK 194
                 +L    I       TL   +   + + NL L   RL    D I+       +L 
Sbjct: 98  -----MDLSNSVIEVS----TLHGILSQCSKLQNLSLEGLRL---SDPIVNTLAKNSNLV 145

Query: 195 KLTLERVC-LDEQMVQKLASECPLLEDLCFSNCW-----GLKHLCVSKASKLKIMEIRSF 248
           +L L       E  +Q L S C  L++L  S C+      ++      +  +  + +  +
Sbjct: 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

Query: 249 SEEIE---IVEISV--PSLQQLTLLFYGARRPRV-----VEVARSPHLKKLDLVSVY-FA 297
            + ++   +  +    P+L  L L    +    +      E  +  +L+ L L   Y   
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDL----SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261

Query: 298 DNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYL 343
                 L  + P+L+ L V      G +++    L +L   +C + 
Sbjct: 262 PETLLEL-GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ-INCSHF 305

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 50/373 (13%), Positives = 114/373 (30%), Gaps = 51/373 (13%)

Query: 20  ISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQ--------LYVSFPILDFDQNYF--F 68
                  +I  +M+Y+   K+    S++ ++W +        + ++             F
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 69  PGASRLDYGSFCVRKQNYSF-SETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
           P    L       R   ++   E    ++      +    +           L  +  + 
Sbjct: 73  PNLRSLK-LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ----------LKSVHFRR 121

Query: 128 SAPIVDRWIRLAVENG---VRELDF---ENITDENTVYTLPQAIFSANSVTNLRLVWCRL 181
              + D  +    +     +  L        T +     L   +     +  L +     
Sbjct: 122 M-IVSDLDLDRLAKARADDLETLKLDKCSGFTTD----GLLSIVTHCRKIKTLLMEESSF 176

Query: 182 EQPFDSIMLCSLKKLT-LERVCLD--------EQMVQKLASECPLLEDLCFSNCWGLKHL 232
            +     +    +  T LE +            + ++ +A  C  L  +   +   L+ +
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236

Query: 233 CV-SKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEV--ARSPHLK 287
                A+ L+     S +E+I + E  +++   ++L  L      P  + +    +  ++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296

Query: 288 KLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC-LPGKIKISSN--QLKNLLFRSCKYLK 344
           KLDL+       +   LI K P+LE L         G   ++    QLK L        +
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

Query: 345 SALCVKVFSTLIG 357
                +   +  G
Sbjct: 357 GMEDEEGLVSQRG 369

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 21/178 (11%)

Query: 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW-----GLKHLCVSKASKLKIMEIR 246
            L+++ L+R+ + +  ++ +A      + L  S+C      GL  +  +    LK +++R
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLR 164

Query: 247 SFS------EEIEIVEISVPSLQQLTLLFYGAR-RPRVVE--VARSPHLKKLDLVSVYFA 297
                      +     +  SL  L +    +      +E  V R P+LK L L +    
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL-NRAVP 223

Query: 298 DNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALCVKVFSTL 355
             +   L+ + P LE+L                 + + L  +    K   C+  F   
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYT-----AEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 50/369 (13%), Positives = 120/369 (32%), Gaps = 48/369 (13%)

Query: 18  DRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQ--------LYVSFPILDFDQNYF- 67
                 P  ++ H+ S++   K+    S++ K W +        +++             
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 68  -FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK 126
            FP    ++      +     F+     +  +V   +         +++ RL    +   
Sbjct: 64  RFPKVRSVE---LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120

Query: 127 GSAPIVDRWIRLAVENGVRELDF---ENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 183
               I   +         + L     E  + +     L     +  ++  L L    ++ 
Sbjct: 121 CLELIAKSFKNF------KVLVLSSCEGFSTD----GLAAIAATCRNLKELDLRESDVDD 170

Query: 184 PFDSIMLC------SLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 233
                +        SL  L +  +   +    +++L + CP L+ L  +    L+ L   
Sbjct: 171 VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230

Query: 234 VSKASKLKIMEIRSFSEEI-----EIVEISVPSLQQLTLL--FYGARRPRVVEVARS-PH 285
           + +A +L+ +    ++ E+       + +++   ++L  L  F+ A    +  V      
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 286 LKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC-LPGKIKISSN--QLKNLLFRSCKY 342
           L  L+L        +   L+ + P L+ L+V       G   ++S    L+ L     + 
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 343 LKSALCVKV 351
                 V +
Sbjct: 351 FVMEPNVAL 359

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 38/257 (14%), Positives = 83/257 (32%), Gaps = 37/257 (14%)

Query: 120 LTFLDVKGSAPIVDRWIRLAVENGVRELD---FENITDENTVYTLPQAIFSANSVTNLRL 176
           L  L +  + P+      L     + EL    +      +    L  A+     +  L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 177 VWCRLEQPFDSI--MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG------ 228
            W  +     ++  +   L  L L    +    + KL  +CP L+ L   +         
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 229 -------LKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR---VV 278
                  L+ L V  +    +    + +E+  +V +S     +L  + Y  R+     ++
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVS-MGCPKLESVLYFCRQMTNAALI 390

Query: 279 EVARS-PHLKKLDLV----------SVYFADNEFNHLISKFPSLEDLFVTRC-CLPGKIK 326
            +AR+ P++ +  L           ++   D  F  ++     L  L ++          
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450

Query: 327 ISSN--QLKNLLFRSCK 341
           I +   +++ L      
Sbjct: 451 IGTYAKKMEMLSVAFAG 467

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 7/34 (20%), Positives = 19/34 (55%)

Query: 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
          ++ LP  +  +++S+LS  ++ +    +  WN+ 
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 35/273 (12%), Positives = 86/273 (31%), Gaps = 76/273 (27%)

Query: 140 VENGVRELDFENITDENTVYTLPQAIFSANSVTNL-----------RLVWCRLEQPFDSI 188
            +  V   D +++ D      +P++I S   + ++           RL W  L +  + +
Sbjct: 26  EDAFVDNFDCKDVQD------MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 189 MLCSLKKLTLERVCLD-EQMVQKLASEC--PLLEDLCFSNCWGLKHLCVSKASKL----- 240
                +K   E + ++ + ++  + +E   P +    +       +      +K      
Sbjct: 80  -----QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 241 -KIMEIRSFSEEIEIVEISVPSLQQLT----LLFYG----ARRPRVVEVARSPHLKK--- 288
              +++R              +L +L     +L  G     +    ++V  S  ++    
Sbjct: 135 QPYLKLRQ-------------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 289 -----LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLK---NLLFRSC 340
                L+L +    +     L      ++  + +R      IK+  + ++     L +S 
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 341 KYLKSAL---------CVKVFS----TLIGTSN 360
            Y    L             F+     L+ T  
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
          D I+ LP  I   + +YL  +++  +  +S+ WN++
Sbjct: 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.26
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.2
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.2
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.15
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.1
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.03
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.02
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.02
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.01
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.01
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.0
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.99
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.98
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.97
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.95
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.95
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.92
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.92
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.91
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.88
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.66
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.49
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.47
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.4
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.39
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.36
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.35
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.29
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.1
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.02
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.95
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.89
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.89
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.86
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.83
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.76
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.71
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.12
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	86.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	83.18

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=4e-24  Score=195.34  Aligned_cols=280  Identities=20%  Similarity=0.260  Sum_probs=179.5

Q ss_pred             ccccccCCchHHHHHHhcCCChhhhhhhcccccchhhhhcc---cceEEeeCCCcCCCCCCCcccccccccccchhhHhH
Q 018106           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS---FPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV   92 (360)
Q Consensus        16 ~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (360)
                      +...++.||||++.+||+||+.+|+++++.|||+|+++...   +..+++....+.                        
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------   60 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------   60 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence            35678999999999999999999999999999999998531   223444433321                        


Q ss_pred             HHHHHHHHHHHhhhhcCCcccceEEEEeecCCCCCChhhHHHHHHHHHHcCceEEEeecccCCCccccCcccccccCCcc
Q 018106           93 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVT  172 (360)
Q Consensus        93 ~~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~  172 (360)
                         ...+...+      ...++.+.+.....  ......      ....+++++|+  +..+......++..+..+++|+
T Consensus        61 ---~~~~~~~~------~~~l~~L~l~~n~l--~~~~~~------~~~~~~L~~L~--L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           61 ---PDVTGRLL------SQGVIAFRCPRSFM--DQPLAE------HFSPFRVQHMD--LSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             ---HHHHHHHH------HTTCSEEECTTCEE--CSCCCS------CCCCBCCCEEE--CTTCEECHHHHHHHHTTBCCCS
T ss_pred             ---HHHHHhhh------hccceEEEcCCccc--cccchh------hccCCCCCEEE--ccCCCcCHHHHHHHHhhCCCCC
Confidence               11122221      12344444321110  000000      01126888888  6544332233555666789999


Q ss_pred             EEEEeeeeccCCC--CccCCCCCCEEEeeeE-EeChHHHHHHHhcCCcccEEEeecCCCCCccc----cccCC-CccEEE
Q 018106          173 NLRLVWCRLEQPF--DSIMLCSLKKLTLERV-CLDEQMVQKLASECPLLEDLCFSNCWGLKHLC----VSKAS-KLKIME  244 (360)
Q Consensus       173 ~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~----i~~l~-~L~~L~  244 (360)
                      +|++.+|.+....  ....+++|++|.++++ .+++..+..++..||+|++|++.+|..+....    +..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            9999988765322  3345889999999998 56777788888889999999999884454321    34578 999999


Q ss_pred             ecccc-----chhhhHhhcCCCccEEEEEeec-CCCcceeeccCCCCccEEEeecc-ccCcHHHHHHhcCCCCCCEEEec
Q 018106          245 IRSFS-----EEIEIVEISVPSLQQLTLLFYG-ARRPRVVEVARSPHLKKLDLVSV-YFADNEFNHLISKFPSLEDLFVT  317 (360)
Q Consensus       245 l~~~~-----~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~L~  317 (360)
                      +.+|.     ..+......+|+|++|+++.+. ........+..+++|+.|++.++ .+.+..+ ..+..+++|++|+++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVF  280 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEecc
Confidence            98883     1233344578899999998665 33334445677899999999877 4555544 235678999999999


Q ss_pred             CcCChhhhhhcCCccceEeccc
Q 018106          318 RCCLPGKIKISSNQLKNLLFRS  339 (360)
Q Consensus       318 ~c~~~~~i~~~~~~L~~L~l~~  339 (360)
                      +|...+.+.....+|+.|++.+
T Consensus       281 ~~i~~~~~~~l~~~l~~L~l~~  302 (336)
T 2ast_B          281 GIVPDGTLQLLKEALPHLQINC  302 (336)
T ss_dssp             TSSCTTCHHHHHHHSTTSEESC
T ss_pred             CccCHHHHHHHHhhCcceEEec
Confidence            8822222222223466666643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=5.4e-23  Score=201.98  Aligned_cols=38  Identities=18%  Similarity=0.476  Sum_probs=29.4

Q ss_pred             ccccccCCchHHHHHHhcCCC-hhhhhhhcccccchhhh
Q 018106           16 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQL   53 (360)
Q Consensus        16 ~~d~i~~LPd~iL~~I~s~L~-~~~~~~~~~vskrW~~l   53 (360)
                      +.|+++.||||||.+||+||| .+|++++++|||||+++
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            358999999999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=1.7e-22  Score=198.46  Aligned_cols=41  Identities=17%  Similarity=0.421  Sum_probs=33.2

Q ss_pred             ccccc----CCchHHHHHHhcCC-Chhhhhhhcccccchhhhhccc
Q 018106           17 MDRIS----ELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSF   57 (360)
Q Consensus        17 ~d~i~----~LPd~iL~~I~s~L-~~~~~~~~~~vskrW~~l~~~~   57 (360)
                      .|+++    .||||++.+||+|| +.+|++++++|||||++++...
T Consensus         6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~   51 (592)
T 3ogk_B            6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSET   51 (592)
T ss_dssp             ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhcc
Confidence            45565    89999999999999 8999999999999999986443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.54  E-value=4.3e-14  Score=128.41  Aligned_cols=198  Identities=17%  Similarity=0.185  Sum_probs=125.7

Q ss_pred             HHcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106          140 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (360)
Q Consensus       140 ~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  218 (360)
                      ...++++|+  +.....  ..+|..++.+++|++|++.++.+...+ ....+++|++|.++++.++  .+..-+..+++|
T Consensus        79 ~~~~l~~L~--L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L  152 (328)
T 4fcg_A           79 TQPGRVALE--LRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRL  152 (328)
T ss_dssp             TSTTCCEEE--EESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTC
T ss_pred             cccceeEEE--ccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCC
Confidence            336777777  543322  266666777888888888887765332 3456788888888887764  223336678888


Q ss_pred             cEEEeecCCCCCcccc-----------ccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCc
Q 018106          219 EDLCFSNCWGLKHLCV-----------SKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL  286 (360)
Q Consensus       219 e~L~l~~c~~~~~~~i-----------~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L  286 (360)
                      ++|++.+|...+.+..           .++++|+.|++.++. ..+......+++|++|+++.+.... .+..+..+++|
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L  231 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL  231 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence            8888888765443321           236788888888775 2222223357788888888554432 22346677888


Q ss_pred             cEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhh---hhcCCccceEeccccccccc
Q 018106          287 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKS  345 (360)
Q Consensus       287 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i---~~~~~~L~~L~l~~c~~l~~  345 (360)
                      +.|+++++.+... +...+..+++|++|+|++|.....+   ...+++|+.|++++|..++.
T Consensus       232 ~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          232 EELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             CEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            8888877665443 2223556788888888887433322   34567788888887765443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.50  E-value=1.2e-13  Score=125.64  Aligned_cols=202  Identities=20%  Similarity=0.198  Sum_probs=138.2

Q ss_pred             HHHHHHHHHcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHH
Q 018106          133 DRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQ  209 (360)
Q Consensus       133 ~~~l~~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~  209 (360)
                      +..+.....++++.++  +.....  ...+..++.+++|++|++.+|.+....   ....+++|++|.++++.+++....
T Consensus        61 ~~~~~~~~~~~l~~L~--l~~n~l--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~  136 (336)
T 2ast_B           61 PDVTGRLLSQGVIAFR--CPRSFM--DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN  136 (336)
T ss_dssp             HHHHHHHHHTTCSEEE--CTTCEE--CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred             HHHHHhhhhccceEEE--cCCccc--cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence            3445555557888888  543221  122233566889999999998765321   345788999999999887766665


Q ss_pred             HHHhcCCcccEEEeecCCCCCcc----ccccCCCccEEEeccc-c-c--hhhhHhhcCC-CccEEEEEeec--CC-Ccce
Q 018106          210 KLASECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSF-S-E--EIEIVEISVP-SLQQLTLLFYG--AR-RPRV  277 (360)
Q Consensus       210 ~l~~~cp~Le~L~l~~c~~~~~~----~i~~l~~L~~L~l~~~-~-~--~~~~~~~~~p-~L~~L~l~~~~--~~-~~~~  277 (360)
                      . +..+|+|++|++.+|..+...    .+.++++|+.|++.+| . .  .+......+| +|++|+++.+.  .. ....
T Consensus       137 ~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~  215 (336)
T 2ast_B          137 T-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS  215 (336)
T ss_dssp             H-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred             H-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence            4 566999999999988655532    1345789999999988 4 1  2344455788 99999998552  22 2223


Q ss_pred             eeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCChhh----hhhcCCccceEecccc
Q 018106          278 VEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRSC  340 (360)
Q Consensus       278 ~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~~~~----i~~~~~~L~~L~l~~c  340 (360)
                      ..+..+++|+.|+++++. +++..+. .+..+++|++|++++|.....    ....+++|+.|++.+|
T Consensus       216 ~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          216 TLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            345678999999998887 6665444 356789999999998843222    2346889999999888

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.39  E-value=5.8e-13  Score=130.44  Aligned_cols=89  Identities=16%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             hcCCCccEEEEEeecC--CCcce-eeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh----hhhhhcC
Q 018106          257 ISVPSLQQLTLLFYGA--RRPRV-VEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP----GKIKISS  329 (360)
Q Consensus       257 ~~~p~L~~L~l~~~~~--~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~----~~i~~~~  329 (360)
                      ..+++|++|+++.+..  ..... .....+++|+.|++.++.+++..+..++..+++|++|+|++|...    ..+...+
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l  512 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL  512 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence            3456666666653221  11111 112347888888888888888777888888899999999988522    2334567


Q ss_pred             CccceEecccccccccc
Q 018106          330 NQLKNLLFRSCKYLKSA  346 (360)
Q Consensus       330 ~~L~~L~l~~c~~l~~~  346 (360)
                      ++|+.|++++|. ++..
T Consensus       513 ~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          513 PSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             SSCCEEEEESCB-CCTT
T ss_pred             CccCeeECcCCc-CCHH
Confidence            889999999887 5554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.35  E-value=9.5e-12  Score=111.84  Aligned_cols=186  Identities=13%  Similarity=0.085  Sum_probs=128.4

Q ss_pred             HcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (360)
Q Consensus       141 ~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  220 (360)
                      ..++++|+  +..+....  ++ .+..+++|++|++.+|.+........+++|++|.++++.++.-.   -+..+++|++
T Consensus        40 l~~L~~L~--l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~  111 (308)
T 1h6u_A           40 LDGITTLS--AFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKT  111 (308)
T ss_dssp             HHTCCEEE--CTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCE
T ss_pred             cCCcCEEE--eeCCCccC--ch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCE
Confidence            35888888  54433222  33 45667889999998888765444667888999999888874321   2677889999


Q ss_pred             EEeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcH
Q 018106          221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (360)
Q Consensus       221 L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (360)
                      |++.+|.......+..+++|+.|+++++. ..+.. ...+++|+.|+++.+.......  +..+++|+.|+++++.+++-
T Consensus       112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence            99988865443345667889999998876 22222 3367889999888654433222  67888999999988877653


Q ss_pred             HHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEeccccc
Q 018106          300 EFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       300 ~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c~  341 (360)
                      ..   +..+++|++|++++|..  ... ...+++|+.|++.++.
T Consensus       189 ~~---l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          189 SP---LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             GG---GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred             hh---hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence            21   66788899999988722  222 3467788888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.34  E-value=1.1e-11  Score=113.05  Aligned_cols=166  Identities=14%  Similarity=0.098  Sum_probs=92.9

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~  246 (360)
                      .+++|++|++.+|.+........+++|++|.++++.+.+-..   +..+++|+.|++.+|.......+..+++|+.|++.
T Consensus       153 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  229 (347)
T 4fmz_A          153 NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG  229 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             hCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEcc
Confidence            344455555554444332223445555555555555421111   44555555555555543322224456777777777


Q ss_pred             ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---
Q 018106          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---  322 (360)
Q Consensus       247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---  322 (360)
                      +|. ..... ...+++|++|+++.+.....  ..+..+++|+.|+++++.+++-   ..+..+++|++|++++|...   
T Consensus       230 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          230 NNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             SSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGG
T ss_pred             CCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcC
Confidence            765 12222 33567777777775443221  2356777888888877776553   23566788888888877332   


Q ss_pred             hhhhhcCCccceEeccccc
Q 018106          323 GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       323 ~~i~~~~~~L~~L~l~~c~  341 (360)
                      ......+++|+.|+++++.
T Consensus       304 ~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          304 MEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             HHHHHTCTTCSEEECCSSS
T ss_pred             hhHhhccccCCEEEccCCc
Confidence            2223457788888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.34  E-value=1.4e-11  Score=112.48  Aligned_cols=170  Identities=16%  Similarity=0.126  Sum_probs=130.1

Q ss_pred             ccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEE
Q 018106          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~  244 (360)
                      +..+++|+.|++.+|.+........+++|+.|.++++.+.+...   +..+++|++|++.+|.......+..+++|+.|+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  249 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLE  249 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEE
Confidence            55689999999999988765456788999999999998743322   678999999999998754444466789999999


Q ss_pred             ecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh
Q 018106          245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG  323 (360)
Q Consensus       245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~  323 (360)
                      +.++. ..+. ....+++|++|+++.+.....  ..+..+++|+.|+++++.++.... ..+..+++|++|++++|....
T Consensus       250 l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          250 IGTNQISDIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCC
T ss_pred             CCCCccCCCh-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCcccc
Confidence            99986 2222 234788999999996654332  246789999999999998876543 446789999999999984322


Q ss_pred             hh-hhcCCccceEeccccc
Q 018106          324 KI-KISSNQLKNLLFRSCK  341 (360)
Q Consensus       324 ~i-~~~~~~L~~L~l~~c~  341 (360)
                      .. ...+++|+.|++.++.
T Consensus       326 ~~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          326 IRPLASLSKMDSADFANQV  344 (347)
T ss_dssp             CGGGGGCTTCSEESSSCC-
T ss_pred             ccChhhhhccceeehhhhc
Confidence            21 4568899999998774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.33  E-value=1.3e-12  Score=118.61  Aligned_cols=215  Identities=16%  Similarity=0.056  Sum_probs=148.9

Q ss_pred             CcccceEEEEeecCCCCCChhhHHHHHHHHHHcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC-Ccc
Q 018106          110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSI  188 (360)
Q Consensus       110 ~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~  188 (360)
                      ...++.+.+......  .    +...+.  ...++++|+  +......  .+|..+..+++|++|++.+|.+...+ ...
T Consensus        80 ~~~l~~L~L~~n~l~--~----lp~~l~--~l~~L~~L~--L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~  147 (328)
T 4fcg_A           80 QPGRVALELRSVPLP--Q----FPDQAF--RLSHLQHMT--IDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIA  147 (328)
T ss_dssp             STTCCEEEEESSCCS--S----CCSCGG--GGTTCSEEE--EESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred             ccceeEEEccCCCch--h----cChhhh--hCCCCCEEE--CCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHh
Confidence            467777776643221  1    111111  146899999  6544333  67777888999999999999877433 456


Q ss_pred             CCCCCCEEEeeeEEeChHHHHHH--------HhcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc-chhhhHhh
Q 018106          189 MLCSLKKLTLERVCLDEQMVQKL--------ASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEI  257 (360)
Q Consensus       189 ~~~~L~~L~L~~~~~~~~~l~~l--------~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~-~~~~~~~~  257 (360)
                      .+++|++|.++++.........+        +.++++|++|++.+|... .+  .+..+++|+.|++.++. ..+.....
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~  226 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIH  226 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence            78999999999986522111111        235999999999998643 32  24567999999999887 22222234


Q ss_pred             cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhh---hcCCccce
Q 018106          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKN  334 (360)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~---~~~~~L~~  334 (360)
                      .+++|++|+++.+......+..+..+++|+.|+++++.+.... ...+..+++|++|+|++|.....+.   ...++|+.
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            7899999999976666666667889999999999987655432 2236789999999999985544443   45667777


Q ss_pred             Eecc
Q 018106          335 LLFR  338 (360)
Q Consensus       335 L~l~  338 (360)
                      +.+.
T Consensus       306 l~l~  309 (328)
T 4fcg_A          306 ILVP  309 (328)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            7765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.31  E-value=2.2e-12  Score=126.34  Aligned_cols=60  Identities=18%  Similarity=0.279  Sum_probs=43.2

Q ss_pred             CCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh----hhhhcCCccceEecccccc
Q 018106          283 SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG----KIKISSNQLKNLLFRSCKY  342 (360)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~----~i~~~~~~L~~L~l~~c~~  342 (360)
                      +++|+.|++.++.+++..+..+...+++|++|+|++|...+    .+...+++|+.|++++|..
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            67788888887777777777766778888888888875422    2233567888888888865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.29  E-value=7.5e-12  Score=112.77  Aligned_cols=195  Identities=15%  Similarity=0.021  Sum_probs=130.1

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccC--CCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      +.+++|+  +.........+|..+..+++|++|++.++.+..  +.....+++|++|.++++.++.... ..+..+++|+
T Consensus        76 ~~L~~L~--L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~  152 (313)
T 1ogq_A           76 PYLNFLY--IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLV  152 (313)
T ss_dssp             TTCSEEE--EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCC
T ss_pred             CCCCeee--CCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCCCC
Confidence            6788888  542122234567677788999999999988752  2245678899999999988742221 2356789999


Q ss_pred             EEEeecCCCCCcc--ccccCC-CccEEEecccc-c-hhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106          220 DLCFSNCWGLKHL--CVSKAS-KLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (360)
Q Consensus       220 ~L~l~~c~~~~~~--~i~~l~-~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (360)
                      +|++.+|...+.+  .+..++ +|+.|++.++. . .........+ |+.|+++.+.........+..+++|+.|+++++
T Consensus       153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            9999988643222  334455 89999998876 1 1111112233 888888855444344455678899999999888


Q ss_pred             ccCcHHHHHHhcCCCCCCEEEecCcCC---hhhhhhcCCccceEecccccc
Q 018106          295 YFADNEFNHLISKFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRSCKY  342 (360)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i~~~~~~L~~L~l~~c~~  342 (360)
                      .++... .. +..+++|++|++++|..   ........++|+.|+++++.-
T Consensus       232 ~l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          232 SLAFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCBG-GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ceeeec-Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            776432 11 56678999999998833   223345678899999887754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.26  E-value=2.8e-11  Score=108.75  Aligned_cols=165  Identities=13%  Similarity=0.067  Sum_probs=126.6

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~  246 (360)
                      ..++|++|++.++.+........+++|++|.++++.+++-..   +..+++|++|++.+|.....-.+..+++|+.|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence            468999999999987755456779999999999998843222   78899999999999875433345668999999999


Q ss_pred             ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--Chh
Q 018106          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPG  323 (360)
Q Consensus       247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~  323 (360)
                      ++. ..+.. ...+++|++|+++.+.......  +..+++|+.|+++++.+++-..   +..+++|++|++++|.  ...
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcCh
Confidence            987 22222 3478999999999665433222  7789999999999998876322   7789999999999983  222


Q ss_pred             hhhhcCCccceEeccccc
Q 018106          324 KIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       324 ~i~~~~~~L~~L~l~~c~  341 (360)
                      . ...+++|+.|+++++.
T Consensus       190 ~-l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          190 P-LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             G-GGGCTTCCEEECTTSC
T ss_pred             h-hcCCCCCCEEEccCCc
Confidence            2 4568899999998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=1.3e-11  Score=114.57  Aligned_cols=177  Identities=15%  Similarity=0.083  Sum_probs=101.1

Q ss_pred             cccCCccEEEEeeeeccCCC------CccCCCCCCEEEeeeEEeChHH---HHHHHhcC---------CcccEEEeecCC
Q 018106          166 FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQM---VQKLASEC---------PLLEDLCFSNCW  227 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~---l~~l~~~c---------p~Le~L~l~~c~  227 (360)
                      ..+++|++|+|++|.+...+      ....+++|++|.|+++.+++..   +...+..+         |+|++|++.+|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            45677777777777766532      2245677777777777764333   22233334         777777777765


Q ss_pred             CCC-cc-----ccccCCCccEEEeccccc---hhhh----HhhcCCCccEEEEEeecCC----CcceeeccCCCCccEEE
Q 018106          228 GLK-HL-----CVSKASKLKIMEIRSFSE---EIEI----VEISVPSLQQLTLLFYGAR----RPRVVEVARSPHLKKLD  290 (360)
Q Consensus       228 ~~~-~~-----~i~~l~~L~~L~l~~~~~---~~~~----~~~~~p~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~  290 (360)
                      ... .+     .+..+++|+.|.+.+|.-   ....    ....+++|+.|+++.+...    ......+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            321 11     122456777777777651   1111    1235677777777754432    12223456677777777


Q ss_pred             eeccccCcHHHH---HHhc--CCCCCCEEEecCcCChh----hhh----hcCCccceEecccccc
Q 018106          291 LVSVYFADNEFN---HLIS--KFPSLEDLFVTRCCLPG----KIK----ISSNQLKNLLFRSCKY  342 (360)
Q Consensus       291 l~~~~~~~~~~~---~~~~--~~~~L~~L~L~~c~~~~----~i~----~~~~~L~~L~l~~c~~  342 (360)
                      |+++.+++....   ..+.  .+++|++|+|++|....    .+.    ..+++|+.|++.++..
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            777777664333   2232  26777777777773322    122    3457777777776643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.25  E-value=9.9e-12  Score=110.32  Aligned_cols=173  Identities=16%  Similarity=0.043  Sum_probs=78.5

Q ss_pred             cccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEE-eChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCc
Q 018106          166 FSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKL  240 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L  240 (360)
                      ..+++|++|++.++.+...  .....+++|++|.++++. ++.-.. ..+..+++|++|++.+|.....  -.+..+++|
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            3455666666665544321  123445566666666554 321111 1134456666666655543221  112334566


Q ss_pred             cEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106          241 KIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (360)
Q Consensus       241 ~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~  318 (360)
                      +.|++.++. ..+.. ....+++|++|+++.+.........+..+++|+.|++.++.++... ...+..+++|++|++++
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCC
Confidence            666665553 11111 1123455666666533322111112445566666666555544321 12234455666666665


Q ss_pred             cCC---hhhhhhcCCccceEecccc
Q 018106          319 CCL---PGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       319 c~~---~~~i~~~~~~L~~L~l~~c  340 (360)
                      |..   .......+++|+.|++.+.
T Consensus       211 n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          211 NNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             CcCCcCCHHHcccCcccCEEeccCC
Confidence            511   1122334555666665544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.25  E-value=1.3e-11  Score=108.97  Aligned_cols=187  Identities=14%  Similarity=0.074  Sum_probs=124.5

Q ss_pred             HcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (360)
Q Consensus       141 ~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  220 (360)
                      ..+++++.  +......  . ...+..+++|++|++.+|.+........+++|++|.++++.++.-. ...+..+++|++
T Consensus        40 l~~L~~L~--l~~~~i~--~-~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  113 (272)
T 3rfs_A           40 LNSIDQII--ANNSDIK--S-VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKE  113 (272)
T ss_dssp             HTTCCEEE--CTTSCCC--C-CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred             ccceeeee--eCCCCcc--c-ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCE
Confidence            46888888  5443222  1 2245668999999999988765545667889999999988774222 123567899999


Q ss_pred             EEeecCCCCCccc--cccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          221 LCFSNCWGLKHLC--VSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       221 L~l~~c~~~~~~~--i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      |++.+|.......  +..+++|+.|++.++. ..+.. ....+++|+.|+++.+.........+..+++|+.|++.++.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            9998886432221  4557899999998885 22211 123578899999986655433333457788999999988877


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCcCChhhhhhcCCccceEecc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFR  338 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~~~~~L~~L~l~  338 (360)
                      +.. ....+..+++|++|++.+|+..    ..+++|+.|.+.
T Consensus       194 ~~~-~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~  230 (272)
T 3rfs_A          194 KSV-PDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEW  230 (272)
T ss_dssp             SCC-CTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHH
T ss_pred             Ccc-CHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHH
Confidence            653 2334667889999999887322    234555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.24  E-value=2.7e-11  Score=107.94  Aligned_cols=165  Identities=16%  Similarity=0.066  Sum_probs=116.1

Q ss_pred             HcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (360)
Q Consensus       141 ~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  220 (360)
                      ..+++.|.  +..+....  ++ .+..+++|+.|++.+|.+........+++|+.|.++++.++.  +.. +..+++|+.
T Consensus        45 l~~L~~L~--l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~  116 (291)
T 1h6t_A           45 LNSIDQII--ANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKS  116 (291)
T ss_dssp             HHTCCEEE--CTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCE
T ss_pred             cCcccEEE--ccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCE
Confidence            36788888  64433222  22 355688999999999887654446678899999999888743  222 678899999


Q ss_pred             EEeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcH
Q 018106          221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (360)
Q Consensus       221 L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (360)
                      |++.+|.....-.+..+++|+.|+++++. ..+ .....+++|+.|+++.+.......  +..+++|+.|+++++.+++-
T Consensus       117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence            99988865433345567889999998876 222 223367888888888655433222  67888889998888877663


Q ss_pred             HHHHHhcCCCCCCEEEecCc
Q 018106          300 EFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       300 ~~~~~~~~~~~L~~L~L~~c  319 (360)
                        . .+..+++|+.|++++|
T Consensus       194 --~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          194 --R-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             --G-GGTTCTTCSEEEEEEE
T ss_pred             --h-hhccCCCCCEEECcCC
Confidence              2 2677888888888887

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.23  E-value=8.3e-11  Score=111.87  Aligned_cols=187  Identities=14%  Similarity=0.109  Sum_probs=88.9

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      +++++|+  +..+....  + ..+..+++|++|++.+|.+........+++|+.|.++++.+++-  . .+..+++|+.|
T Consensus       177 ~~L~~L~--l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L  248 (466)
T 1o6v_A          177 TTLERLD--ISSNKVSD--I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDL  248 (466)
T ss_dssp             TTCCEEE--CCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEE
T ss_pred             CCCCEEE--CcCCcCCC--C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--h-hhhcCCCCCEE
Confidence            5677777  54332211  1 22445667777777766654433334456666666666655321  1 13455566666


Q ss_pred             EeecCCCCCccccccCCCccEEEecccc-chhhhH---------------------hhcCCCccEEEEEeecCCCcceee
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIV---------------------EISVPSLQQLTLLFYGARRPRVVE  279 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~---------------------~~~~p~L~~L~l~~~~~~~~~~~~  279 (360)
                      ++.+|.......+..+++|+.|++.++. .....+                     ...+|+|+.|+++.+.......  
T Consensus       249 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--  326 (466)
T 1o6v_A          249 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--  326 (466)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--
T ss_pred             ECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--
Confidence            6655543222223344455555554443 111110                     1234455555555333222111  


Q ss_pred             ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhh-hhcCCccceEeccccc
Q 018106          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCK  341 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i-~~~~~~L~~L~l~~c~  341 (360)
                      +..+++|+.|++.++.+++.   ..+..+++|+.|++++|...... ...+++|+.|++.++.
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA  386 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred             hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence            34555555555555554442   12445566666666655221111 2345566666666553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=112.85  Aligned_cols=174  Identities=15%  Similarity=0.076  Sum_probs=84.0

Q ss_pred             cCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEE-eChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCcc
Q 018106          168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLK  241 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~  241 (360)
                      +++|++|++.++.+....   ....+++|++|.++++. ++.-. ...+..+++|++|++.+|.....  ..+..+++|+
T Consensus       123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence            455555555555443221   12345555555555542 21110 11134455555555555432111  1223345566


Q ss_pred             EEEecccc-chhhhH-hhcCCCccEEEEEeecCCCccee---eccCCCCccEEEeeccccCcHHH---HHHhcCCCCCCE
Q 018106          242 IMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVV---EVARSPHLKKLDLVSVYFADNEF---NHLISKFPSLED  313 (360)
Q Consensus       242 ~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~  313 (360)
                      .|++.++. ..+... .-.+++|+.|+++.+........   .....+.++.+++....+.+..+   ...+..+++|++
T Consensus       202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~  281 (353)
T 2z80_A          202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE  281 (353)
T ss_dssp             EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred             eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence            66665554 111111 11356666666664433221111   11234556666666665555433   334567888888


Q ss_pred             EEecCcCC---hhhhhhcCCccceEecccccc
Q 018106          314 LFVTRCCL---PGKIKISSNQLKNLLFRSCKY  342 (360)
Q Consensus       314 L~L~~c~~---~~~i~~~~~~L~~L~l~~c~~  342 (360)
                      |++++|..   ...+...+++|+.|++.+++.
T Consensus       282 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            88888721   222334567888888887653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.22  E-value=1.2e-11  Score=121.43  Aligned_cols=67  Identities=16%  Similarity=0.164  Sum_probs=28.9

Q ss_pred             cCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecC
Q 018106          160 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC  226 (360)
Q Consensus       160 ~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  226 (360)
                      .+|..+..+++|++|++.+|.+....  ....+++|++|.++++.+........+..+++|++|++.+|
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            34444444555555555555443211  23344555555555443321111111334455555555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.22  E-value=1.2e-10  Score=110.78  Aligned_cols=184  Identities=14%  Similarity=0.085  Sum_probs=122.2

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .+++++.  +...   ...++ .+..+++|+.|++.+|.+........+++|++|.++++.+.....   +..+++|++|
T Consensus       156 ~~L~~L~--l~~~---~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L  226 (466)
T 1o6v_A          156 TSLQQLS--FGNQ---VTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDEL  226 (466)
T ss_dssp             TTCSEEE--EEES---CCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEE
T ss_pred             CcccEee--cCCc---ccCch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEE
Confidence            6889999  4321   11222 356789999999999987765556788999999999998743221   5679999999


Q ss_pred             EeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (360)
                      ++.+|.....-.+..+++|+.|++.++. ..... ...+++|++|+++.+.......  +..+++|+.|++.++.+++..
T Consensus       227 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  303 (466)
T 1o6v_A          227 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS  303 (466)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred             ECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence            9999865443345667999999999987 22222 3467899999998654433222  566777777777776665422


Q ss_pred             HHHHhcCCCCCCEEEecCcCChhhh-hhcCCccceEecccc
Q 018106          301 FNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSC  340 (360)
Q Consensus       301 ~~~~~~~~~~L~~L~L~~c~~~~~i-~~~~~~L~~L~l~~c  340 (360)
                      .   +..+++|++|++++|...... ...+++|+.|++.++
T Consensus       304 ~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          304 P---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN  341 (466)
T ss_dssp             G---GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred             h---hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence            1   456677777777766211111 234455555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.20  E-value=3.3e-11  Score=108.55  Aligned_cols=195  Identities=16%  Similarity=0.054  Sum_probs=135.9

Q ss_pred             CceEEEeecccCCCc-cccCcccccccCCccEEEEee-eeccCC--CCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106          143 GVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVW-CRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (360)
Q Consensus       143 ~l~~L~~~l~~~~~~-~~~l~~~l~~~~~L~~L~L~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  218 (360)
                      +|++|+  +...... ...+|..+...++|++|++.+ +.+...  .....+++|++|.++++.++.... ..+..+++|
T Consensus        51 ~l~~L~--L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L  127 (313)
T 1ogq_A           51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             eEEEEE--CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCCCC
Confidence            678888  5443222 125777888899999999995 555422  245678999999999998742222 236789999


Q ss_pred             cEEEeecCCCCCc--cccccCCCccEEEecccc-c-hhhhHhhcCC-CccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106          219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-E-EIEIVEISVP-SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (360)
Q Consensus       219 e~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~-~~~~~~~~~p-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (360)
                      ++|++.+|.....  ..+..+++|+.|+++++. . .+.......+ +|++|+++.+......+..+..++ |+.|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            9999999865322  235568999999999886 1 2222223455 899999996554433444556665 99999999


Q ss_pred             cccCcHHHHHHhcCCCCCCEEEecCcCChh--hhhhcCCccceEecccccc
Q 018106          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCKY  342 (360)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~--~i~~~~~~L~~L~l~~c~~  342 (360)
                      +.++.. ....+..+++|++|++++|....  ......++|+.|+++++.-
T Consensus       207 N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          207 NMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             SEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred             CcccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence            887653 34456789999999999983221  1234578999999988754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.20  E-value=2.2e-11  Score=115.44  Aligned_cols=193  Identities=16%  Similarity=0.066  Sum_probs=111.7

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      +++++|+  +....... ..+..+..+++|++|+|.+|.+....  ....+++|++|.|+++.++.-. ...+..+++|+
T Consensus        99 ~~L~~L~--Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  174 (452)
T 3zyi_A           99 HHLEVLQ--LGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLM  174 (452)
T ss_dssp             TTCCEEE--CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred             CCCCEEE--CCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCccc
Confidence            4666666  43322211 11223344677777777777654322  2445677777777777653211 12245677777


Q ss_pred             EEEeecCCCCCccc---cccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc
Q 018106          220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (360)
Q Consensus       220 ~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (360)
                      +|++.+|..+..+.   +..+++|+.|+++++. ..+.. ...+++|+.|+++.+.........+..+++|+.|++.++.
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence            77777766555433   3356777777777765 11111 1255677777777554433334456677888888887776


Q ss_pred             cCcHHHHHHhcCCCCCCEEEecCcCC---hhhhhhcCCccceEecccc
Q 018106          296 FADNEFNHLISKFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i~~~~~~L~~L~l~~c  340 (360)
                      ++... ...+..+++|++|+|++|..   .......+++|+.|++.+.
T Consensus       254 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          254 VSLIE-RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CCEEC-TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             CceEC-HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence            65432 22356678888888887721   1223345677888887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.19  E-value=9.8e-12  Score=111.49  Aligned_cols=197  Identities=14%  Similarity=0.030  Sum_probs=109.0

Q ss_pred             cCceEEEeecccCCCcc-ccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      +++++|+  +....... ...+.....+++|++|++.++.+.... ....+++|++|.++++.++.......+..+++|+
T Consensus        52 ~~L~~L~--L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (306)
T 2z66_A           52 TQLTKLS--LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  129 (306)
T ss_dssp             TTCSEEE--CCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred             ccCCEEE--CCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence            4677777  43322211 112334445677777777776654222 2445677777777777663222112355677777


Q ss_pred             EEEeecCCCCCc--cccccCCCccEEEeccccc-h--hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106          220 DLCFSNCWGLKH--LCVSKASKLKIMEIRSFSE-E--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (360)
Q Consensus       220 ~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~~-~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (360)
                      +|++.+|.....  ..+..+++|+.|++.++.- .  .......+++|++|+++.+.........+..+++|+.|+++++
T Consensus       130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence            777777653211  1234457777777777651 1  1122235677777777754443322334566777888887777


Q ss_pred             ccCcHHHHHHhcCCCCCCEEEecCcCChhh---hhhcC-CccceEeccccc
Q 018106          295 YFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISS-NQLKNLLFRSCK  341 (360)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~---i~~~~-~~L~~L~l~~c~  341 (360)
                      .++... ...+..+++|++|++++|.....   ..... ++|+.|++++..
T Consensus       210 ~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          210 NFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCSBCC-SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ccCccC-hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            665421 11245677788888877732221   11223 377777776643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=1.8e-11  Score=108.02  Aligned_cols=171  Identities=16%  Similarity=0.078  Sum_probs=93.6

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc--cccCCCccEEE
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIME  244 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~l~~L~~L~  244 (360)
                      ..++|+.|.+.++.+........+++|++|.++++.+..-  . -+..+++|++|++.+|.......  +..+++|+.|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3566677777766655444455667777777776665321  1 24566777777777664322111  34456777777


Q ss_pred             ecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC-
Q 018106          245 IRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL-  321 (360)
Q Consensus       245 l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~-  321 (360)
                      +.++. ..+.. ....+++|++|++..+.........+..+++|+.|+++++.++.. ....+..+++|++|++++|.. 
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCC
Confidence            76664 11111 112456677777765443322222345667777777776665532 122345567777777776621 


Q ss_pred             --hhhhhhcCCccceEeccccc
Q 018106          322 --PGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       322 --~~~i~~~~~~L~~L~l~~c~  341 (360)
                        .......+++|+.|++.++.
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCHHHHhCCcCCCEEEccCCC
Confidence              11223445667777776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.18  E-value=2.9e-11  Score=107.33  Aligned_cols=172  Identities=15%  Similarity=0.060  Sum_probs=124.5

Q ss_pred             cCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc---ccccCCCccE
Q 018106          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKI  242 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~l~~L~~  242 (360)
                      .++|++|++.++.+....  ....+++|++|.++++.++.-.. ..+..+++|++|++.+|..+..+   .+..+++|+.
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            468999999998875432  35678999999999987743222 23577999999999998644433   3456799999


Q ss_pred             EEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC
Q 018106          243 MEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (360)
Q Consensus       243 L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~  320 (360)
                      |++.++. ... ......+++|++|+++.+.........+..+++|+.|+++++.++.- ....+..+++|++|++++|.
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCc
Confidence            9999886 222 12233678999999996655433333467899999999999887652 22236678999999999983


Q ss_pred             Ch---hhhhhcCCccceEeccccc
Q 018106          321 LP---GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       321 ~~---~~i~~~~~~L~~L~l~~c~  341 (360)
                      ..   ......+++|+.|++.++.
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ccccCHhHccCcccccEeeCCCCc
Confidence            32   2233467899999998863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.18  E-value=3.2e-11  Score=113.92  Aligned_cols=193  Identities=17%  Similarity=0.121  Sum_probs=122.9

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      +++++|+  +..+.... ..+..+..+++|++|+|.+|.+....  ....+++|++|.++++.++.-. ...+..+++|+
T Consensus        88 ~~L~~L~--Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~  163 (440)
T 3zyj_A           88 RHLEILQ--LSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLR  163 (440)
T ss_dssp             SSCCEEE--CCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred             CCCCEEE--CCCCcCCc-cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccC
Confidence            4677777  54332211 11233445788888888888765433  3456788888888888764211 12356788888


Q ss_pred             EEEeecCCCCCccc---cccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc
Q 018106          220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (360)
Q Consensus       220 ~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (360)
                      +|++.+|..+..+.   +.++++|+.|++.++. ..+.. ...+++|+.|+++.+.........+..+++|+.|++.++.
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence            88888876655433   3456888888888775 11111 2356788888888554433333456778888888888877


Q ss_pred             cCcHHHHHHhcCCCCCCEEEecCcC---ChhhhhhcCCccceEecccc
Q 018106          296 FADNEFNHLISKFPSLEDLFVTRCC---LPGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~L~~c~---~~~~i~~~~~~L~~L~l~~c  340 (360)
                      ++... ...+..+++|++|+|++|.   ........+++|+.|++.+.
T Consensus       243 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          243 IQVIE-RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CCEEC-TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             eeEEC-hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence            65532 2335677888888888872   12233345678888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.18  E-value=1.1e-10  Score=97.68  Aligned_cols=146  Identities=20%  Similarity=0.196  Sum_probs=83.4

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCC--ccccccCCCccEEE
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME  244 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~i~~l~~L~~L~  244 (360)
                      .+++|+.|++.++.+........+++|++|.++++.+..-.   .+..+|+|++|++.+|....  ...+..+++|+.|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            35667777777766654334556677777777777542221   25567777888777765432  22334567777777


Q ss_pred             ecccc-ch-hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          245 IRSFS-EE-IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       245 l~~~~-~~-~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ++++. .. .......+++|++|+++.+....... .+..+++|+.|+++++.+++-.   .+..+++|++|++.++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence            77665 11 11112355666666666443111222 3556677777777666665421   3456666777776664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.18  E-value=5.5e-11  Score=104.70  Aligned_cols=172  Identities=16%  Similarity=0.077  Sum_probs=88.7

Q ss_pred             cCceEEEeecccCCCccccCcc-cccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  218 (360)
                      .++++|+  +.....  ..++. .+..+++|++|++.++.+....  ....+++|++|.++++.+..-.. ..+..+++|
T Consensus        37 ~~l~~L~--l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLD--LQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNL  111 (270)
T ss_dssp             TTCSEEE--CCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSC
T ss_pred             CCCCEEE--CcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCC
Confidence            3566666  433221  12222 3344667777777766654332  22456677777777666532111 224556777


Q ss_pred             cEEEeecCCCCCc--cccccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106          219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (360)
Q Consensus       219 e~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (360)
                      ++|++.++.....  ..+..+++|+.|+++++. ..+.. ....+++|++|++..+.........+..+++|+.|+++++
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            7777766543221  113345677777776664 11111 1124566777776644333222223455667777777666


Q ss_pred             ccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          295 YFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      .++.- ....+..+++|+.|+|.+|
T Consensus       192 ~l~~~-~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          192 QLKRV-PEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred             cCCcC-CHHHhccccCCCEEEecCC
Confidence            55432 1223455666777777665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.17  E-value=2.4e-11  Score=122.73  Aligned_cols=196  Identities=18%  Similarity=0.130  Sum_probs=103.5

Q ss_pred             cCceEEEeecccCCCccccCcc--cccccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHH--HHhc
Q 018106          142 NGVRELDFENITDENTVYTLPQ--AIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQK--LASE  214 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~--l~~~  214 (360)
                      .++++|+  +..+.. ...+|.  .+..+++|++|++.+|.+....   ....+++|++|+++++.++......  .+..
T Consensus       100 ~~L~~L~--Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A          100 ASLTSLD--LSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             TTCCEEE--CCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             CCCCEEE--CCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            4788888  543222 223444  6777888999999888765332   2256788888888888773322222  2567


Q ss_pred             CCcccEEEeecCCCCCccccccCCCccEEEecccc-ch-hhhHhhcCCCccEEEEEeecCCCcceeeccC----------
Q 018106          215 CPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EE-IEIVEISVPSLQQLTLLFYGARRPRVVEVAR----------  282 (360)
Q Consensus       215 cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~-~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~----------  282 (360)
                      +++|++|++.+|...+......+++|+.|++.++. .. ... .-.+++|++|+++.+......+..+..          
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            77777777776654333333445555555555554 00 111 123445555555533332222223344          


Q ss_pred             ------------CCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC---ChhhhhhcCCccceEeccccc
Q 018106          283 ------------SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC---LPGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       283 ------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~---~~~~i~~~~~~L~~L~l~~c~  341 (360)
                                  +++|++|++.++.+++.....+...+++|++|++++|.   ........+++|+.|++.++.
T Consensus       256 ~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  329 (768)
T 3rgz_A          256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN  329 (768)
T ss_dssp             SSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred             CCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence                        44555555544444322212222224666666666652   222233456667777776654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.17  E-value=1.1e-11  Score=117.51  Aligned_cols=203  Identities=17%  Similarity=0.174  Sum_probs=139.2

Q ss_pred             HHHcCceEEEeecccCCCccc---cCcccccccCCccEEEEeeeeccCCC---CccCCC----CCCEEEeeeEEeChH--
Q 018106          139 AVENGVRELDFENITDENTVY---TLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLC----SLKKLTLERVCLDEQ--  206 (360)
Q Consensus       139 ~~~~~l~~L~~~l~~~~~~~~---~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~----~L~~L~L~~~~~~~~--  206 (360)
                      ...+++++|+  +..+.....   .++..+..+++|++|+++++.+....   ....++    +|++|.++++.+++.  
T Consensus        25 ~~~~~L~~L~--L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           25 PLLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhcCCccEEE--ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            3447999999  655443322   45556667899999999998875422   122344    799999999998653  


Q ss_pred             -HHHHHHhcCCcccEEEeecCCCCCccc---c-----ccCCCccEEEecccc-c--h---hhhHhhcCCCccEEEEEeec
Q 018106          207 -MVQKLASECPLLEDLCFSNCWGLKHLC---V-----SKASKLKIMEIRSFS-E--E---IEIVEISVPSLQQLTLLFYG  271 (360)
Q Consensus       207 -~l~~l~~~cp~Le~L~l~~c~~~~~~~---i-----~~l~~L~~L~l~~~~-~--~---~~~~~~~~p~L~~L~l~~~~  271 (360)
                       .+...+..+++|++|++.+|.. ....   +     ...++|++|++.+|. .  .   +......+++|++|+++.+.
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence             4555678999999999999863 2211   1     123589999999987 1  1   12223367999999999554


Q ss_pred             CCCcceeec-----cCCCCccEEEeeccccCcHH---HHHHhcCCCCCCEEEecCcCChhh--------hhhcCCccceE
Q 018106          272 ARRPRVVEV-----ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK--------IKISSNQLKNL  335 (360)
Q Consensus       272 ~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~c~~~~~--------i~~~~~~L~~L  335 (360)
                      ........+     ...++|+.|+++++.+++..   +...+..+++|++|++++|.....        +...+++|+.|
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L  261 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL  261 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence            432211112     23679999999999887753   455667899999999999843221        11247899999


Q ss_pred             eccccccccc
Q 018106          336 LFRSCKYLKS  345 (360)
Q Consensus       336 ~l~~c~~l~~  345 (360)
                      ++++| .++.
T Consensus       262 ~L~~n-~l~~  270 (461)
T 1z7x_W          262 WIWEC-GITA  270 (461)
T ss_dssp             ECTTS-CCCH
T ss_pred             ECcCC-CCCH
Confidence            99988 4444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.17  E-value=6.4e-11  Score=115.89  Aligned_cols=165  Identities=16%  Similarity=0.062  Sum_probs=116.5

Q ss_pred             HcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (360)
Q Consensus       141 ~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  220 (360)
                      ..+|+.|.  +..+...  .++ .+..+++|+.|+|.+|.+........+++|+.|.|+++.+..-  . -+..+++|+.
T Consensus        42 L~~L~~L~--l~~n~i~--~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~  113 (605)
T 1m9s_A           42 LNSIDQII--ANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKS  113 (605)
T ss_dssp             HTTCCCCB--CTTCCCC--CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCE
T ss_pred             CCCCCEEE--CcCCCCC--CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCE
Confidence            36788877  5433322  222 4566889999999998876554466788999999998887432  1 2677899999


Q ss_pred             EEeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcH
Q 018106          221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (360)
Q Consensus       221 L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (360)
                      |+|.+|.....-.+..+++|+.|.+++|. ..+ .....+++|+.|+++.+......+  +..+++|+.|+|+++.+.+-
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            99988865443345567899999998886 222 223367889999888655543333  77888999999988877663


Q ss_pred             HHHHHhcCCCCCCEEEecCc
Q 018106          300 EFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       300 ~~~~~~~~~~~L~~L~L~~c  319 (360)
                        . .+..+++|+.|+|++|
T Consensus       191 --~-~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          191 --R-ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             --G-GGTTCTTCSEEECCSE
T ss_pred             --h-HHccCCCCCEEEccCC
Confidence              2 3667888999998887

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.17  E-value=1.1e-10  Score=105.79  Aligned_cols=191  Identities=14%  Similarity=0.068  Sum_probs=103.1

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      +++++|+  +..+... ...|..+..+++|++|++.++.+...+ ...+++|++|.++++.++.... ..+..+++|+.|
T Consensus        76 ~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L  150 (330)
T 1xku_A           76 KNLHTLI--LINNKIS-KISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVRK-SVFNGLNQMIVV  150 (330)
T ss_dssp             TTCCEEE--CCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBCH-HHHTTCTTCCEE
T ss_pred             CCCCEEE--CCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccC-hhhcccccEEECCCCcccccCH-hHhcCCccccEE
Confidence            5677777  5432221 122444556778888888887665322 2233678888887776643222 235677888888


Q ss_pred             EeecCCCC----CccccccCCCccEEEeccccchhhhHhh-cCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          222 CFSNCWGL----KHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       222 ~l~~c~~~----~~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      ++.++...    ....+..+++|+.|++.++.  +..+.. ..++|++|+++.+.........+..+++|+.|+++++.+
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECCCCc--cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            88776542    11223445677777777664  111111 125666666664433222223455666666666666655


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEecccc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c  340 (360)
                      +... ...+..+++|++|++++|.  .+......+++|+.|++.++
T Consensus       229 ~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          229 SAVD-NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             CEEC-TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             ceeC-hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence            4421 1124456666666666652  11111234556666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.16  E-value=8e-11  Score=111.58  Aligned_cols=104  Identities=18%  Similarity=0.155  Sum_probs=55.7

Q ss_pred             CCccEEEecccc-ch-----hhhHhhcCCCccEEEEEeecCCCcc-----eeeccCCCCccEEEeeccccCcHH---HHH
Q 018106          238 SKLKIMEIRSFS-EE-----IEIVEISVPSLQQLTLLFYGARRPR-----VVEVARSPHLKKLDLVSVYFADNE---FNH  303 (360)
Q Consensus       238 ~~L~~L~l~~~~-~~-----~~~~~~~~p~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~---~~~  303 (360)
                      ++|++|++.+|. ..     +......+++|++|+++.+......     ......+++|+.|+++++.+++..   +..
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            466666666654 11     1111224566777766644322111     011224677777777777766644   344


Q ss_pred             HhcCCCCCCEEEecCcCChh----hhh----hcCCccceEeccccc
Q 018106          304 LISKFPSLEDLFVTRCCLPG----KIK----ISSNQLKNLLFRSCK  341 (360)
Q Consensus       304 ~~~~~~~L~~L~L~~c~~~~----~i~----~~~~~L~~L~l~~c~  341 (360)
                      .+..+++|++|++++|....    .+.    ...++|+.|++.+|.
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence            45557777777777763321    111    123578888887775

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.16  E-value=1.4e-11  Score=110.48  Aligned_cols=194  Identities=16%  Similarity=0.044  Sum_probs=129.5

Q ss_pred             cCceEEEeecccCCCccccCcccc-cccCCccEEEEeeeeccCC----CCccCCCCCCEEEeeeEEeChHHHHHHHhcCC
Q 018106          142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERVCLDEQMVQKLASECP  216 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp  216 (360)
                      .++++|+  +.....  ..++... ..+++|++|++.++.+...    .....+++|++|.++++.+..  +..-+..++
T Consensus        28 ~~l~~L~--L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~  101 (306)
T 2z66_A           28 SSATRLE--LESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLE  101 (306)
T ss_dssp             TTCCEEE--CCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCT
T ss_pred             CCCCEEE--CCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCC
Confidence            4788888  544332  2455443 4578899999988876532    123457889999998887631  111156788


Q ss_pred             cccEEEeecCCCCCc---cccccCCCccEEEecccc-c-hhhhHhhcCCCccEEEEEeecCCC-cceeeccCCCCccEEE
Q 018106          217 LLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLD  290 (360)
Q Consensus       217 ~Le~L~l~~c~~~~~---~~i~~l~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~  290 (360)
                      +|++|++.++.....   ..+..+++|+.|+++++. . ........+++|++|++..+.... ..+..+..+++|+.|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            999999988754222   134567899999998876 1 111222357899999998554433 2344577889999999


Q ss_pred             eeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEecccccc
Q 018106          291 LVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCKY  342 (360)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~~  342 (360)
                      ++++.++... ...+..+++|++|++++|...   ......+++|+.|+++++.-
T Consensus       182 Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          182 LSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             CTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             CCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            9988876532 234667899999999998321   22334678999999998743

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.16  E-value=1.5e-10  Score=105.94  Aligned_cols=172  Identities=15%  Similarity=0.047  Sum_probs=118.0

Q ss_pred             cCceEEEeecccCCCccccCcc-cccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  218 (360)
                      +++++|+  +......  .++. .+..+++|++|++.++.+....  ....+++|++|+++++.++.-. ...+..+++|
T Consensus        52 ~~L~~L~--l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLD--LSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEE--CTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTC
T ss_pred             ccCcEEE--CCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccC
Confidence            4788888  6443322  2333 4556899999999998765332  3567889999999998875322 2346789999


Q ss_pred             cEEEeecCCCCCc---cccccCCCccEEEecccc--chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEee
Q 018106          219 EDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS--EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (360)
Q Consensus       219 e~L~l~~c~~~~~---~~i~~l~~L~~L~l~~~~--~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  292 (360)
                      ++|++.++.....   ..+..+++|+.|++.++.  ..+. .....+++|++|+++.+.........+..+++|++|+++
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            9999998854321   124567899999999874  1221 122367889999998665544334456788899999998


Q ss_pred             ccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          293 SVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ++.++.. ....+..+++|++|++++|
T Consensus       207 ~n~l~~~-~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          207 MKQHILL-LEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             CSCSTTH-HHHHHHHTTTEEEEEEESC
T ss_pred             CCccccc-hhhhhhhcccccEEECCCC
Confidence            8877542 3344556888999999887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.16  E-value=1e-10  Score=111.48  Aligned_cols=104  Identities=19%  Similarity=0.091  Sum_probs=58.3

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      .++++|+  +..+... ...+..+..+++|++|++.++.+....  ....+++|++|.++++.++.-.. ..+..+++|+
T Consensus       104 ~~L~~L~--Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~  179 (477)
T 2id5_A          104 SNLTKLD--ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLI  179 (477)
T ss_dssp             TTCCEEE--CTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCC
T ss_pred             CCCCEEE--CCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCc
Confidence            4677777  4332211 112233445677888888776653221  34567788888888777643222 2356778888


Q ss_pred             EEEeecCCCCC--ccccccCCCccEEEecccc
Q 018106          220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFS  249 (360)
Q Consensus       220 ~L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~  249 (360)
                      .|++.++....  ...+..+++|+.|++.++.
T Consensus       180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             EEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            88887765321  1123345566666666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.15  E-value=1.8e-10  Score=109.04  Aligned_cols=105  Identities=15%  Similarity=0.114  Sum_probs=61.1

Q ss_pred             cCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCE
Q 018106          236 KASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED  313 (360)
Q Consensus       236 ~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  313 (360)
                      .+++|+.|+++++. ... ......+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++|++
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  375 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKE  375 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhccccccccE
Confidence            45677777777665 111 111225567777777754443332334566777777777777665431 223556777888


Q ss_pred             EEecCcCC---hhhhhhcCCccceEeccccc
Q 018106          314 LFVTRCCL---PGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       314 L~L~~c~~---~~~i~~~~~~L~~L~l~~c~  341 (360)
                      |++++|..   ...+...+++|+.|++++++
T Consensus       376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            88877621   12233456778888877654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.15  E-value=4.4e-11  Score=107.50  Aligned_cols=203  Identities=17%  Similarity=0.114  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHHcCceEEEeecccCCCccccCcccc--cccCCccEEEEeeeeccCCC------CccCCCCCCEEEeeeEE
Q 018106          131 IVDRWIRLAVENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC  202 (360)
Q Consensus       131 ~~~~~l~~~~~~~l~~L~~~l~~~~~~~~~l~~~l--~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~  202 (360)
                      .+..........++++|+  +..+.. ....+..+  ...++|++|++.+|.+....      ....+++|++|.++++.
T Consensus        80 ~~~~~~~~~~~~~L~~L~--l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~  156 (310)
T 4glp_A           80 LLVGALRVLAYSRLKELT--LEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH  156 (310)
T ss_dssp             HHHHHHHHHHHSCCCEEE--EESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred             HHHHHHHhcccCceeEEE--eeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence            455555555567899999  544322 22333344  56899999999999877432      12358999999999998


Q ss_pred             eChHHHHHHHhcCCcccEEEeecCCCCCc------cccccCCCccEEEecccc-chhhh----HhhcCCCccEEEEEeec
Q 018106          203 LDEQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLLFYG  271 (360)
Q Consensus       203 ~~~~~l~~l~~~cp~Le~L~l~~c~~~~~------~~i~~l~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~~~~  271 (360)
                      +..... ..+..+++|++|++.+|...+.      .....+++|+.|++++|. ..+..    +.-..++|++|+++.+.
T Consensus       157 l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          157 SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred             cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence            743222 2356889999999999875332      222467899999999887 22222    22367999999999665


Q ss_pred             CCCcceeeccCC---CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh-hhhhcCCccceEeccccc
Q 018106          272 ARRPRVVEVARS---PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       272 ~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~-~i~~~~~~L~~L~l~~c~  341 (360)
                      .....+..+..+   ++|++|+++++.++.  +..  .-+++|++|+|++|.... .....+++|+.|++++..
T Consensus       236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          236 LRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred             CCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence            544333333444   799999999988763  111  123799999999983322 234567899999987653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.14  E-value=2.6e-11  Score=118.13  Aligned_cols=152  Identities=17%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             cCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHH-HHHHHhcCCcccEEEeecCCCCCcc-ccccCCCccEEEe
Q 018106          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQM-VQKLASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEI  245 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~l~~L~~L~l  245 (360)
                      +++|+.|.+.++..........+++|++|.++++.++... ....+..+++|++|++.+|...... .+..+++|+.|++
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  403 (570)
T 2z63_A          324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  403 (570)
T ss_dssp             CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence            3444444444444332222256677777777776653221 1123556778888887776432111 1334566666666


Q ss_pred             cccc-chhh--hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          246 RSFS-EEIE--IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       246 ~~~~-~~~~--~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      .++. ....  .....+++|++|+++.+.........+..+++|+.|++.++.+.+..+...+..+++|++|++++|
T Consensus       404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            6554 1110  112245556666665333222222233445555555555544432222223344555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.14  E-value=2.7e-11  Score=118.99  Aligned_cols=174  Identities=16%  Similarity=0.074  Sum_probs=84.6

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHH-HHHHHhcCCcccEEEeecCCCCCc-cccccCCCccEEE
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQM-VQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIME  244 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~c~~~~~-~~i~~l~~L~~L~  244 (360)
                      .+++|+.|++.++..........+++|+.|.++++.++... +...+..+++|++|++.+|..... ..+..+++|+.|+
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD  405 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence            45555556555553221113345677777777776653221 122356677777777777642110 1122345555555


Q ss_pred             ecccc-chh--------------------------hhHhhcCCCccEEEEEeecCCC-cceeeccCCCCccEEEeecccc
Q 018106          245 IRSFS-EEI--------------------------EIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       245 l~~~~-~~~--------------------------~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      +.++. ...                          ......+++|++|++..+.... ..+..+..+++|+.|+++++.+
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  485 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL  485 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence            55443 111                          0111133445555544332222 1223345566666666666555


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~  341 (360)
                      +... ...+..+++|++|++++|...   ......+++|+.|+++++.
T Consensus       486 ~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          486 EQIS-WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             CEEC-TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CccC-hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            4321 223455666666666666221   1223345667777776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.13  E-value=1.1e-10  Score=117.86  Aligned_cols=153  Identities=15%  Similarity=0.019  Sum_probs=101.2

Q ss_pred             cccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEE
Q 018106          166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~  244 (360)
                      ..+++|++|++.+|.+.... ....+++|++|.++++.++.... ..+..+++|++|++.+|...+.+....+++|++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            45677788888777664322 34567888888888887753333 34677888888888888654433333567888888


Q ss_pred             ecccc-c-hhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          245 IRSFS-E-EIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       245 l~~~~-~-~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +.++. . .+.. +.-.+++|++|++..+......+..+..+++|+.|++.++.+.+......+..+++|++|++++|
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            88775 1 1111 11124788888888555444444556778888888888777664433444667888888888877

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.13  E-value=1e-10  Score=108.44  Aligned_cols=199  Identities=16%  Similarity=0.122  Sum_probs=137.9

Q ss_pred             cCceEEEeecccCCCcc---ccCcccccccCCccEEEEeeeeccCCC-----C-------ccCCCCCCEEEeeeEEeChH
Q 018106          142 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF-----D-------SIMLCSLKKLTLERVCLDEQ  206 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~L~~~~~~~~~-----~-------~~~~~~L~~L~L~~~~~~~~  206 (360)
                      +++++|+  +..+....   ..+...+..+++|++|+|.+|.+....     .       ...+++|++|.|+++.++..
T Consensus        32 ~~L~~L~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           32 DSVKEIV--LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             SCCCEEE--CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCccEEE--CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            7899999  65443222   123334556899999999997543211     1       14689999999999998654


Q ss_pred             ---HHHHHHhcCCcccEEEeecCCCCCc--ccc----ccC---------CCccEEEecccc---chhhhH---hhcCCCc
Q 018106          207 ---MVQKLASECPLLEDLCFSNCWGLKH--LCV----SKA---------SKLKIMEIRSFS---EEIEIV---EISVPSL  262 (360)
Q Consensus       207 ---~l~~l~~~cp~Le~L~l~~c~~~~~--~~i----~~l---------~~L~~L~l~~~~---~~~~~~---~~~~p~L  262 (360)
                         .+...+..+++|+.|++.+|.....  ..+    ..+         ++|++|.+++|.   ..+..+   ...+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               3555678899999999999864211  111    123         799999999886   122322   2378899


Q ss_pred             cEEEEEeecCCCc----cee-eccCCCCccEEEeeccccCc---HHHHHHhcCCCCCCEEEecCcCChhh----hhh---
Q 018106          263 QQLTLLFYGARRP----RVV-EVARSPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDLFVTRCCLPGK----IKI---  327 (360)
Q Consensus       263 ~~L~l~~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~L~~c~~~~~----i~~---  327 (360)
                      ++|.++.+.....    ... .+..+++|+.|+|+++.+++   ..+...+..+++|++|+|++|.....    +..   
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            9999996654321    111 46788999999999998875   33455678899999999999843222    221   


Q ss_pred             --cCCccceEecccccc
Q 018106          328 --SSNQLKNLLFRSCKY  342 (360)
Q Consensus       328 --~~~~L~~L~l~~c~~  342 (360)
                        .+++|+.|+++++.-
T Consensus       270 ~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             TCSSCCCCEEECCSSCC
T ss_pred             hccCCCeEEEECcCCcC
Confidence              278999999998753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.13  E-value=2.1e-10  Score=109.26  Aligned_cols=82  Identities=10%  Similarity=0.050  Sum_probs=46.2

Q ss_pred             CCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceE
Q 018106          259 VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNL  335 (360)
Q Consensus       259 ~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L  335 (360)
                      +++|++|+++.+..............+|+.|+++++.++.- ....+..+++|++|+|++|...   ......+++|+.|
T Consensus       199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (477)
T 2id5_A          199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI  277 (477)
T ss_dssp             CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred             CcccceeeCCCCccccccCcccccCccccEEECcCCccccc-CHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence            44555555553322222222222334677777776666542 2334677888999999887321   1223456788888


Q ss_pred             eccccc
Q 018106          336 LFRSCK  341 (360)
Q Consensus       336 ~l~~c~  341 (360)
                      ++.++.
T Consensus       278 ~L~~n~  283 (477)
T 2id5_A          278 QLVGGQ  283 (477)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            887653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.12  E-value=1.9e-10  Score=109.00  Aligned_cols=180  Identities=18%  Similarity=0.115  Sum_probs=109.1

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      +++++|+  +..+....  ++  +..+++|++|++.+|.+.... ...+++|++|.++++.++.-  .  +..+++|++|
T Consensus        64 ~~L~~L~--Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L  132 (457)
T 3bz5_A           64 TGLTKLI--CTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYL  132 (457)
T ss_dssp             TTCSEEE--CCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEE
T ss_pred             CCCCEEE--ccCCcCCe--Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEE
Confidence            5666666  43332222  12  344566777777666655432 44566777777777665332  1  4566777777


Q ss_pred             EeecCCCCCccccccCCCccEEEeccccchhhhHh-hcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (360)
                      ++.+|. +..+.+..+++|+.|++.++. .+..+. ..+++|+.|+++.+....   +.+..+++|+.|++.++.++.. 
T Consensus       133 ~l~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~---l~l~~l~~L~~L~l~~N~l~~~-  206 (457)
T 3bz5_A          133 NCARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKL-  206 (457)
T ss_dssp             ECTTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCCC---CCCTTCTTCCEEECCSSCCSCC-
T ss_pred             ECCCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccce---eccccCCCCCEEECcCCcCCee-
Confidence            776664 333455566777777777664 222222 256778888887554433   2267788888888888777653 


Q ss_pred             HHHHhcCCCCCCEEEecCcCChhhhhhcCCccceEeccccc
Q 018106          301 FNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       301 ~~~~~~~~~~L~~L~L~~c~~~~~i~~~~~~L~~L~l~~c~  341 (360)
                         -+..+++|++|++++|....--...+++|+.|++.++.
T Consensus       207 ---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          207 ---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             ---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC
T ss_pred             ---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc
Confidence               15677889999988872211013456788888887653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.12  E-value=3.9e-10  Score=100.40  Aligned_cols=165  Identities=16%  Similarity=0.097  Sum_probs=109.6

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~  246 (360)
                      .+++|+.|++.+|.+........+++|++|.++++.+++-.  . +..+++|+.|++.+|.....-.+..+++|+.|+++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence            46778888888877665444566788888888888774322  1 67788888888887764333335566788888888


Q ss_pred             ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--Chh
Q 018106          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPG  323 (360)
Q Consensus       247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~  323 (360)
                      ++. ..+.. ...+++|+.|+++.+.....  ..+..+++|+.|+++++.+++...   +..+++|++|++++|.  .+.
T Consensus       121 ~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          121 HNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             TSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCcCCCChh-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh
Confidence            776 22221 23577888888885544332  345677888888888777765322   6677888888888772  222


Q ss_pred             hhhhcCCccceEeccccc
Q 018106          324 KIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       324 ~i~~~~~~L~~L~l~~c~  341 (360)
                      . ...+++|+.|++.++.
T Consensus       195 ~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          195 A-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             G-GTTCTTCSEEEEEEEE
T ss_pred             h-hccCCCCCEEECcCCc
Confidence            2 3456778888887653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.11  E-value=1.2e-10  Score=110.29  Aligned_cols=84  Identities=14%  Similarity=0.004  Sum_probs=55.6

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC----CccCCCCCCEEEeeeEEeChHHHHHHHhcCCc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCLDEQMVQKLASECPL  217 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  217 (360)
                      .++++|+  +..+.. ....|..+..+++|++|++.+|.+....    ....+++|++|.++++.++......++..+++
T Consensus        79 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           79 SSLIILK--LDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCCEEE--CTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             ccCCEEe--CCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            5788888  543322 1223445566788888888888775311    25567888888888887743333334677888


Q ss_pred             ccEEEeecCCC
Q 018106          218 LEDLCFSNCWG  228 (360)
Q Consensus       218 Le~L~l~~c~~  228 (360)
                      |++|++.+|..
T Consensus       156 L~~L~L~~n~l  166 (455)
T 3v47_A          156 FHVLDLTFNKV  166 (455)
T ss_dssp             CCEEECTTCCB
T ss_pred             ccEEeCCCCcc
Confidence            99998887753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.11  E-value=1.1e-10  Score=111.73  Aligned_cols=167  Identities=15%  Similarity=0.064  Sum_probs=99.6

Q ss_pred             ccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccE
Q 018106          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKI  242 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~  242 (360)
                      +..+++|++|++++|.+..   ....++|++|.++++.++...    ...+|+|+.|++.+|.....  ..+..+++|+.
T Consensus        76 l~~l~~L~~L~Ls~N~l~~---l~~~~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  148 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred             cccCCCCCEEEecCCcCCC---CCCCCCcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence            4446667777776666552   223366777777666653221    12357777777777654322  23345678888


Q ss_pred             EEecccc-ch--hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          243 MEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       243 L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      |+++++. ..  ...+.-.+++|+.|+++.+.....  .....+++|+.|+++++.+++-. . .+..+++|+.|+|++|
T Consensus       149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~-~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-P-EFQSAAGVTWISLRNN  224 (487)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC-G-GGGGGTTCSEEECTTS
T ss_pred             EECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCC-H-hHcCCCCccEEEecCC
Confidence            8888776 11  122222567888888885444322  22345788888888887776521 1 2556788888888887


Q ss_pred             CC--hhhhhhcCCccceEecccccc
Q 018106          320 CL--PGKIKISSNQLKNLLFRSCKY  342 (360)
Q Consensus       320 ~~--~~~i~~~~~~L~~L~l~~c~~  342 (360)
                      ..  +......+++|+.|++.++..
T Consensus       225 ~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          225 KLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             cCcccchhhccCCCCCEEEcCCCCC
Confidence            32  122233457788888877643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.10  E-value=1.5e-10  Score=113.70  Aligned_cols=150  Identities=16%  Similarity=0.137  Sum_probs=83.4

Q ss_pred             ccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEE
Q 018106          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~  244 (360)
                      +..+++|+.|++.++.+........+++|++|.+.++.++  .+..+  .+|+|++|++.+|.......+..+++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            3446788888888877654434556677888888887762  22222  6788888888877655555555667777777


Q ss_pred             ecccc-chh---hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          245 IRSFS-EEI---EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       245 l~~~~-~~~---~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ++++. ...   ......+++|++|+++.+.... ....+..+++|+.|++.++.+........+..+++|++|++++|
T Consensus       357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             CcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            77665 111   2223356667777766433211 11233445555555555444333211112333444444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.09  E-value=3.4e-10  Score=104.99  Aligned_cols=81  Identities=16%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceE
Q 018106          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNL  335 (360)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L  335 (360)
                      .+|+|++|+++.+......+..+..+++|+.|+++++.++.-  ......+++|++|++++|..  +......+++|+.|
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  323 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence            455666666664433322233345566666666665554431  11123456666666666521  11112234556666


Q ss_pred             ecccc
Q 018106          336 LFRSC  340 (360)
Q Consensus       336 ~l~~c  340 (360)
                      ++.++
T Consensus       324 ~L~~N  328 (390)
T 3o6n_A          324 YLDHN  328 (390)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            66554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.08  E-value=1.8e-10  Score=109.04  Aligned_cols=192  Identities=15%  Similarity=0.092  Sum_probs=134.0

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      .+++.|+  +....... ..+..+..+++|++|+|.++.+....  ....+++|++|.|+++.++.-. ...+..+++|+
T Consensus        75 ~~l~~L~--L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLN--LMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEE--CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCC
T ss_pred             CCccEEE--CcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCC
Confidence            4788888  54332221 22334556899999999998765322  4567899999999998874222 12356789999


Q ss_pred             EEEeecCCCCC--ccccccCCCccEEEeccccchhhhH----hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106          220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (360)
Q Consensus       220 ~L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (360)
                      +|++.+|....  ...+..+++|+.|++.++. .+..+    ...+++|++|+++.+.....  ..+..+++|+.|++++
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSG  227 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTT
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcC
Confidence            99999886422  1224467999999999876 33322    23678999999996554332  2467889999999999


Q ss_pred             cccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106          294 VYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~  341 (360)
                      +.++... ...+..+++|++|++++|...   ......+++|+.|+++++.
T Consensus       228 N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          228 NHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             SCCSEEC-GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcCcccC-cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence            8876532 334778999999999998322   2234567899999998773

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.08  E-value=1.7e-10  Score=113.18  Aligned_cols=131  Identities=21%  Similarity=0.237  Sum_probs=82.1

Q ss_pred             ccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc---ccccCCCc
Q 018106          165 IFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKL  240 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~l~~L  240 (360)
                      +..+++|++|++.++.+...+ ....+++|++|.++++.+..... ..+..+|+|+.|++.+|.....+   .+..+++|
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            445799999999998876433 45678999999999998753322 23678999999999998653222   24456788


Q ss_pred             cEEEecccc-chh---hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          241 KIMEIRSFS-EEI---EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       241 ~~L~l~~~~-~~~---~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      +.|++.++. ...   ......+++|++|+++.+.........+..+++|+.|++.++.+
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            888887765 111   11123566777777764433222222334445555555544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.08  E-value=2e-10  Score=103.51  Aligned_cols=186  Identities=14%  Similarity=0.041  Sum_probs=112.5

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      ++++.|+  +..+....  .+. +..+++|++|++++|.+..   ....++|++|.++++.++...    ...+++|++|
T Consensus        58 ~~L~~L~--Ls~n~l~~--~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L  125 (317)
T 3o53_A           58 TKLELLN--LSSNVLYE--TLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKKNI  125 (317)
T ss_dssp             TTCCEEE--CTTSCCEE--EEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCCSEEE----ECCCSSCEEE
T ss_pred             CcCCEEE--CCCCcCCc--chh-hhhcCCCCEEECcCCcccc---ccCCCCcCEEECCCCccCCcC----ccccCCCCEE
Confidence            5677777  43322211  111 4456777777777776653   223477777777777653222    1246778888


Q ss_pred             EeecCCCCCc--cccccCCCccEEEecccc-ch--hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          222 CFSNCWGLKH--LCVSKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       222 ~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      ++.+|.....  ..+..+++|+.|+++++. ..  ...+.-.+++|++|+++.+.....  .....+++|+.|+++++.+
T Consensus       126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcC
Confidence            8877754321  233456888888888776 11  122223568888888885543221  2233578899999988877


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEeccccccc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSCKYL  343 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c~~l  343 (360)
                      +.-.  ..+..+++|++|++++|..  +......+++|+.|++.++...
T Consensus       204 ~~l~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          204 AFMG--PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CEEC--GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             Ccch--hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            6521  1256778899999988722  2222345678899988876543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.08  E-value=2.5e-10  Score=112.02  Aligned_cols=81  Identities=16%  Similarity=0.186  Sum_probs=36.6

Q ss_pred             cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceE
Q 018106          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNL  335 (360)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L  335 (360)
                      .+|+|+.|+++.+......+..+..+++|+.|+++++.++.-  ......+|+|++|+|++|..  +......+++|+.|
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  329 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence            345555555554333222223344555555555555544331  11123355566666655521  11112234555555


Q ss_pred             ecccc
Q 018106          336 LFRSC  340 (360)
Q Consensus       336 ~l~~c  340 (360)
                      +++++
T Consensus       330 ~L~~N  334 (597)
T 3oja_B          330 YLDHN  334 (597)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.07  E-value=2.6e-10  Score=111.60  Aligned_cols=163  Identities=17%  Similarity=0.090  Sum_probs=86.7

Q ss_pred             cCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecc
Q 018106          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  247 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~  247 (360)
                      .++|+.|++.++.+........+++|+.|.|+++.+..-..   +..+++|+.|+|.+|.....-.+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence            45666666666655543344556666666666665532111   456666666666666432222344456666666666


Q ss_pred             cc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--Chhh
Q 018106          248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPGK  324 (360)
Q Consensus       248 ~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~  324 (360)
                      +. ..+.. ...+|+|+.|.++.+.....  ..+..+++|+.|+|+++.+.+...   +..+++|+.|+|++|.  .+. 
T Consensus       119 N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~-  191 (605)
T 1m9s_A          119 NGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-  191 (605)
T ss_dssp             SCCCCCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-
T ss_pred             CCCCCCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh-
Confidence            54 11111 22456666666664433221  234566666666666665554321   4556666666666651  111 


Q ss_pred             hhhcCCccceEecccc
Q 018106          325 IKISSNQLKNLLFRSC  340 (360)
Q Consensus       325 i~~~~~~L~~L~l~~c  340 (360)
                      ....+++|+.|++.++
T Consensus       192 ~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          192 ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GGTTCTTCSEEECCSE
T ss_pred             HHccCCCCCEEEccCC
Confidence            1234556666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.07  E-value=1.7e-10  Score=108.92  Aligned_cols=192  Identities=13%  Similarity=0.081  Sum_probs=131.9

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      .+++.|+  +........ .+..+..+++|++|+|.+|.+....  ....+++|++|.|+++.++.-. ...+..+++|+
T Consensus        64 ~~l~~L~--L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  139 (440)
T 3zyj_A           64 TNTRLLN--LHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLK  139 (440)
T ss_dssp             TTCSEEE--CCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCC
T ss_pred             CCCcEEE--ccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCc
Confidence            4778888  544332221 1234556899999999998765332  4567899999999998774221 12356789999


Q ss_pred             EEEeecCCCCC--ccccccCCCccEEEeccccchhhhH----hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106          220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (360)
Q Consensus       220 ~L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (360)
                      +|++.++....  ...+..+++|+.|++.++. .+..+    ...+++|++|+++.+....-  ..+..+++|+.|++++
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSG  216 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTT
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCC
Confidence            99999886422  1234567899999999865 22222    23678999999996554321  2467889999999999


Q ss_pred             cccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106          294 VYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~  341 (360)
                      +.++... ...+..+++|++|+|.+|...   ......+++|+.|+++++.
T Consensus       217 N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          217 NHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             SCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             CccCccC-hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence            8876532 334678899999999998322   2233467899999998763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.06  E-value=6.3e-10  Score=105.47  Aligned_cols=158  Identities=15%  Similarity=0.052  Sum_probs=100.8

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .++++|+  +..+.....  +  +..+++|++|++.++.+.... ...+++|++|.++++.++.-  .  +..+++|++|
T Consensus        85 ~~L~~L~--Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L  153 (457)
T 3bz5_A           85 TNLTYLA--CDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL  153 (457)
T ss_dssp             TTCSEEE--CCSSCCSCC--C--CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred             CCCCEEE--CcCCCCcee--e--cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence            5788888  544333222  2  556788999999888776542 56778888888888877432  1  5678888888


Q ss_pred             EeecCCCCCccccccCCCccEEEeccccchhhhH-hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (360)
                      ++.+|..++.+.+..+++|+.|+++++.  +..+ ...+++|+.|.+..+.....   .+..+++|+.|+++++.++.- 
T Consensus       154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-  227 (457)
T 3bz5_A          154 DCHLNKKITKLDVTPQTQLTTLDCSFNK--ITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-  227 (457)
T ss_dssp             ECTTCSCCCCCCCTTCTTCCEEECCSSC--CCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-
T ss_pred             ECCCCCcccccccccCCcCCEEECCCCc--cceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-
Confidence            8888866666666667778888877765  1112 22456677777664433221   355666666666666665541 


Q ss_pred             HHHHhcCCCCCCEEEecCc
Q 018106          301 FNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       301 ~~~~~~~~~~L~~L~L~~c  319 (360)
                       .  +..+++|++|++++|
T Consensus       228 -p--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          228 -D--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             -C--CTTCTTCSEEECCSS
T ss_pred             -C--ccccCCCCEEEeeCC
Confidence             1  445566666666655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.06  E-value=6.4e-11  Score=106.58  Aligned_cols=173  Identities=18%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             ccCCccEEEEeeeeccCCC--Cc--cCCCCCCEEEeeeEEeChH--HHHHHHh-cCCcccEEEeecCCCCCc--cccccC
Q 018106          167 SANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQ--MVQKLAS-ECPLLEDLCFSNCWGLKH--LCVSKA  237 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~--~~--~~~~~L~~L~L~~~~~~~~--~l~~l~~-~cp~Le~L~l~~c~~~~~--~~i~~l  237 (360)
                      ..++|++|++.+|.+....  ..  ..+++|++|.++++.++..  .+..+.. ..++|++|++.+|.....  -.+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            3556666666666554221  11  4556666666666655322  1221110 125666666666543221  123345


Q ss_pred             CCccEEEecccc-chhh----hHh-hcCCCccEEEEEeecCCCc--c-eeeccCCCCccEEEeeccccCcHHHHHHhcCC
Q 018106          238 SKLKIMEIRSFS-EEIE----IVE-ISVPSLQQLTLLFYGARRP--R-VVEVARSPHLKKLDLVSVYFADNEFNHLISKF  308 (360)
Q Consensus       238 ~~L~~L~l~~~~-~~~~----~~~-~~~p~L~~L~l~~~~~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  308 (360)
                      ++|+.|+++++. ....    .+. ..+++|++|+++.+.....  . ...+..+++|+.|+++++.+++......+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            566666666554 1100    110 2445666666654333210  0 01123455666666665555442111122334


Q ss_pred             CCCCEEEecCcCChhhhhhc-CCccceEecccc
Q 018106          309 PSLEDLFVTRCCLPGKIKIS-SNQLKNLLFRSC  340 (360)
Q Consensus       309 ~~L~~L~L~~c~~~~~i~~~-~~~L~~L~l~~c  340 (360)
                      ++|++|++++|... .+... .++|+.|+++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N  284 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYN  284 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCCSEEEEEECCSS
T ss_pred             CCCCEEECCCCccC-hhhhhccCCceEEECCCC
Confidence            56666666655211 22111 145666665544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.05  E-value=3.2e-10  Score=94.84  Aligned_cols=147  Identities=16%  Similarity=0.096  Sum_probs=105.7

Q ss_pred             ccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecccc-ch-hhhHhhcCCCccE
Q 018106          187 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EE-IEIVEISVPSLQQ  264 (360)
Q Consensus       187 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~-~~~~~~~~p~L~~  264 (360)
                      ...+++|++|.++++.+++-.  . +..+++|++|++.+|.....-.+..+++|++|++.++. .. .......+|+|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT--G-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCccChH--H-HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            356789999999998875211  2 67899999999999944333355678999999999876 11 1111236789999


Q ss_pred             EEEEeecCCCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEecccc
Q 018106          265 LTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       265 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c  340 (360)
                      |+++.+.........+..+++|+.|+++++. +++-  . .+..+++|++|++++|..  .. ....+++|+.|++.+.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence            9999666554444557788999999998886 6553  2 467889999999998832  22 3446788999888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.04  E-value=4.2e-10  Score=99.01  Aligned_cols=171  Identities=18%  Similarity=0.080  Sum_probs=116.5

Q ss_pred             CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEE
Q 018106          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME  244 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~  244 (360)
                      ++|+.|++.++.+....  ....+++|++|.++++.++.-. ...+..+++|++|++.++.....  -.+..+++|+.|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            67899999998876443  3567889999999988764211 22356789999999998764221  1234578999999


Q ss_pred             ecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC-
Q 018106          245 IRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL-  321 (360)
Q Consensus       245 l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~-  321 (360)
                      +.++. ..+. .....+++|++|+++.+.........+..+++|+.|++.++.++.-. ...+..+++|++|+|++|.. 
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcCC
Confidence            98875 1221 11236789999999865544333333677899999999888765521 22356789999999998722 


Q ss_pred             --hhhhhhcCCccceEeccccc
Q 018106          322 --PGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       322 --~~~i~~~~~~L~~L~l~~c~  341 (360)
                        .......+++|+.|++.+.+
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          195 RVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCHHHhccccCCCEEEecCCC
Confidence              22233457789999987654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.03  E-value=1.5e-10  Score=104.17  Aligned_cols=192  Identities=19%  Similarity=0.086  Sum_probs=131.1

Q ss_pred             HHcCceEEEeecccCCCccccCcccc--cccCCccEEEEeeeeccCCC-CccCC-----CCCCEEEeeeEEeChHHHHHH
Q 018106          140 VENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF-DSIML-----CSLKKLTLERVCLDEQMVQKL  211 (360)
Q Consensus       140 ~~~~l~~L~~~l~~~~~~~~~l~~~l--~~~~~L~~L~L~~~~~~~~~-~~~~~-----~~L~~L~L~~~~~~~~~l~~l  211 (360)
                      ...++++|+  +..+.. ...+|..+  ...++|++|++.++.+...+ ....+     ++|++|.++++.++..... .
T Consensus        93 ~l~~L~~L~--L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~  168 (312)
T 1wwl_A           93 GISGLQELT--LENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-Q  168 (312)
T ss_dssp             TTSCCCEEE--EEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-T
T ss_pred             CcCCccEEE--ccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-H
Confidence            347899999  543322 22344444  56899999999999876542 11223     8999999999987433222 2


Q ss_pred             HhcCCcccEEEeecCCCCCcc------ccccCCCccEEEecccc-chhhhH----hhcCCCccEEEEEeecCCCcce-ee
Q 018106          212 ASECPLLEDLCFSNCWGLKHL------CVSKASKLKIMEIRSFS-EEIEIV----EISVPSLQQLTLLFYGARRPRV-VE  279 (360)
Q Consensus       212 ~~~cp~Le~L~l~~c~~~~~~------~i~~l~~L~~L~l~~~~-~~~~~~----~~~~p~L~~L~l~~~~~~~~~~-~~  279 (360)
                      +..+++|++|++.+|...+..      ....+++|+.|+++++. ..+..+    ...+++|++|+++.+......+ ..
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            568999999999998754321      22567999999999987 222222    2367899999999665544332 33


Q ss_pred             ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEecccc
Q 018106          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c  340 (360)
                      +..+++|+.|+++++.++.  +...+  .++|++|++++|.  .... ....++|+.|++.+.
T Consensus       249 ~~~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCCCTTCCEEECTTSCCSS--CCSSC--CSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred             hhhcCCCCEEECCCCccCh--hhhhc--cCCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence            4567999999999988762  12111  1799999999982  2222 446788999998765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.02  E-value=2.8e-10  Score=101.24  Aligned_cols=188  Identities=18%  Similarity=0.135  Sum_probs=124.1

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      .++++++  +..  ..-..+|..+  .++|+.|++.++.+....  ....+++|++|.++++.++.-..   ...+++|+
T Consensus        10 ~~l~~l~--~~~--~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~   80 (290)
T 1p9a_G           10 ASHLEVN--CDK--RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLG   80 (290)
T ss_dssp             TTCCEEE--CTT--SCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCC
T ss_pred             CCccEEE--CCC--CCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCC
Confidence            3566666  432  2223444433  268999999998865322  45678999999999987742211   16789999


Q ss_pred             EEEeecCCCCCccc--cccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc
Q 018106          220 DLCFSNCWGLKHLC--VSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (360)
Q Consensus       220 ~L~l~~c~~~~~~~--i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (360)
                      .|++.++.. ..+.  +..+++|+.|+++++. ..+. ...-.+++|++|.++.+.........+..+++|+.|+++++.
T Consensus        81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            999998754 2222  3457899999999886 2221 122367899999998655543333345678999999999888


Q ss_pred             cCcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEecccc
Q 018106          296 FADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c  340 (360)
                      ++.- ....+..+++|++|+|++|.  .+..-....++|+.|.+.+.
T Consensus       160 l~~l-~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          160 LTEL-PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CSCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             CCcc-CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence            7642 23345678999999999872  22222234567999998754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.02  E-value=5.5e-10  Score=101.16  Aligned_cols=191  Identities=11%  Similarity=0.069  Sum_probs=128.8

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChH-HHHHHHhcCCcc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQ-MVQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~cp~L  218 (360)
                      +++++|+  +......  .+|..++  ++|++|++.++.+....  ....+++|+.|.++++.++.. .....+..+++|
T Consensus       100 ~~L~~L~--Ls~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A          100 VKLERLY--LSKNQLK--ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             TTCCEEE--CCSSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             CCCCEEE--CCCCcCC--ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence            6899999  6443222  4444333  79999999998876443  346789999999999887532 222346789999


Q ss_pred             cEEEeecCCCCCccccccCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       219 e~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      ++|++.++.. ..+...-.++|+.|++.++. ... ......+++|++|+++.+.........+..+++|+.|+++++.+
T Consensus       174 ~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          174 SYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             CEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             CEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            9999998864 33332223799999999886 122 12233678999999996554333233467789999999998887


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCcCCh---hhhh------hcCCccceEeccccc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRCCLP---GKIK------ISSNQLKNLLFRSCK  341 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~------~~~~~L~~L~l~~c~  341 (360)
                      +.  +...+..+++|++|++++|...   ....      ...+.|+.|++.+.+
T Consensus       253 ~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          253 VK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             SS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cc--CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            63  2333567899999999987211   1111      123678888887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.01  E-value=5.8e-10  Score=108.49  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=41.1

Q ss_pred             cCCCccEEEEEeecCCCcc-eeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh----hhhhhcCCcc
Q 018106          258 SVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP----GKIKISSNQL  332 (360)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~----~~i~~~~~~L  332 (360)
                      .+++|++|++..+...... ...+..+++|+.|+++++.+... ....+..+++|++|++++|...    ......+++|
T Consensus       394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence            3455555555432221111 12244556666666665554332 1223455666777777666322    1223345677


Q ss_pred             ceEeccccc
Q 018106          333 KNLLFRSCK  341 (360)
Q Consensus       333 ~~L~l~~c~  341 (360)
                      +.|+++++.
T Consensus       473 ~~L~l~~n~  481 (570)
T 2z63_A          473 TFLDLSQCQ  481 (570)
T ss_dssp             CEEECTTSC
T ss_pred             CEEECCCCc
Confidence            777776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.01  E-value=2.3e-10  Score=100.90  Aligned_cols=171  Identities=15%  Similarity=0.091  Sum_probs=82.1

Q ss_pred             ccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCC--ccccccCCCc
Q 018106          165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKL  240 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~i~~l~~L  240 (360)
                      +..+++|++|++.+|.+....  ....+++|++|.++++.++.... ..+..+++|++|++.++....  ...+..+++|
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            344566777777666544221  23456667777776665532211 124556677777776654322  1224455667


Q ss_pred             cEEEecccc-ch--hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCcc----EEEeeccccCcHHHHHHhcCCCCCCE
Q 018106          241 KIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK----KLDLVSVYFADNEFNHLISKFPSLED  313 (360)
Q Consensus       241 ~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~  313 (360)
                      +.|+++++. ..  +......+++|++|+++.+.........+..+++|+    .|+++++.++.-. .. .....+|++
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~-~~-~~~~~~L~~  204 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-PG-AFKEIRLKE  204 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC-TT-SSCSCCEEE
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC-cc-ccCCCcccE
Confidence            777776654 11  122223456666666664433221111222223333    5555555443311 11 112235666


Q ss_pred             EEecCcC---ChhhhhhcCCccceEecc
Q 018106          314 LFVTRCC---LPGKIKISSNQLKNLLFR  338 (360)
Q Consensus       314 L~L~~c~---~~~~i~~~~~~L~~L~l~  338 (360)
                      |++++|.   ....+...+++|+.|++.
T Consensus       205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          205 LALDTNQLKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             EECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred             EECCCCceeecCHhHhcccccccEEEcc
Confidence            6666652   112222345566666665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.00  E-value=1.6e-09  Score=104.99  Aligned_cols=173  Identities=17%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  219 (360)
                      +.+++|+  +...... ...+..+..+++|++|++.+|.+....  ....+++|++|+++++.++.... ..+..+++|+
T Consensus        26 ~~L~~L~--Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLD--LSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEE--CCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCC
T ss_pred             CCccEEE--CcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCc
Confidence            4677887  5433221 122334556788888888888764322  34567888888888887743332 2357788888


Q ss_pred             EEEeecCCCCC-c--cccccCCCccEEEecccc--chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106          220 DLCFSNCWGLK-H--LCVSKASKLKIMEIRSFS--EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (360)
Q Consensus       220 ~L~l~~c~~~~-~--~~i~~l~~L~~L~l~~~~--~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (360)
                      +|++.+|.... .  -.+..+++|+.|++.++.  ..+. .....+++|++|++..+......+..+..+++|++|++.+
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            88888875422 1  124456888888888774  1221 1123567888888886555443444566677777777776


Q ss_pred             cccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          294 VYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +..... ...++..+++|++|++++|
T Consensus       182 n~~~~~-~~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          182 SESAFL-LEIFADILSSVRYLELRDT  206 (549)
T ss_dssp             SBSTTH-HHHHHHSTTTBSEEEEESC
T ss_pred             Cccccc-chhhHhhcccccEEEccCC
Confidence            655432 2333455777777777776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.99  E-value=9.9e-10  Score=98.99  Aligned_cols=166  Identities=8%  Similarity=-0.058  Sum_probs=71.8

Q ss_pred             CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--ccc-ccCCCccEEEe
Q 018106          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCV-SKASKLKIMEI  245 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i-~~l~~L~~L~l  245 (360)
                      ++|+.|++.+|.+.... ...+++|++|.++++.++.-.- ..+..+++|++|++.+|.....  ..+ ..+++|+.|++
T Consensus        99 ~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A           99 PSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CCcCEEECCCCccCCcC-ccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            55555555555443221 2234555555555555432111 1123455555555555532211  011 12455555555


Q ss_pred             cccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh--
Q 018106          246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP--  322 (360)
Q Consensus       246 ~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~--  322 (360)
                      +++. ..+.. ....++|+.|+++.+.... ....+..+++|+.|+++++.++.  +...+..+++|+.|++++|...  
T Consensus       177 ~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             TTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             CCCcCccccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCc
Confidence            5554 11100 1124555555555333221 11124445555555555555442  1222344555555555555322  


Q ss_pred             --hhhhhcCCccceEecccc
Q 018106          323 --GKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       323 --~~i~~~~~~L~~L~l~~c  340 (360)
                        .......++|+.|++.++
T Consensus       253 ~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          253 TLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHhccccceEEECCCc
Confidence              122233444555554433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=1.3e-10  Score=111.18  Aligned_cols=187  Identities=20%  Similarity=0.140  Sum_probs=132.3

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      +++++|+  +..+.... ..|..+..+++|++|+|++|.+........+++|++|+|+++.++.      +...|+|+.|
T Consensus        34 ~~L~~L~--Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L  104 (487)
T 3oja_A           34 WNVKELD--LSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL  104 (487)
T ss_dssp             GGCCEEE--CCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred             CCccEEE--eeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence            4899999  65433222 2234566789999999999987643336788999999999998742      2245999999


Q ss_pred             EeecCCCCCccccccCCCccEEEecccc-chhhhH-hhcCCCccEEEEEeecCCCcceeec-cCCCCccEEEeeccccCc
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVVEV-ARSPHLKKLDLVSVYFAD  298 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~  298 (360)
                      ++.+|.. ..+....+++|+.|+++++. ..+... ...+++|+.|+++.+......+..+ ..+++|+.|+++++.+++
T Consensus       105 ~L~~N~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          105 HAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             ECCSSCC-CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ECcCCcC-CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            9999864 43444557899999999886 222221 2357899999999665544333333 368999999999988766


Q ss_pred             HHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEeccccc
Q 018106          299 NEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       299 ~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c~  341 (360)
                      .  . ....+++|++|+|++|..  +..-...+++|+.|+++++.
T Consensus       184 ~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          184 V--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             E--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             c--c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence            3  1 123589999999999832  21224467899999998864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=2.8e-10  Score=104.60  Aligned_cols=196  Identities=11%  Similarity=0.023  Sum_probs=123.9

Q ss_pred             CceEEEeecccCCCccccCcccccc----c-CCccEEEEeeeeccCCC------CccCC-CCCCEEEeeeEEeChHHHH-
Q 018106          143 GVRELDFENITDENTVYTLPQAIFS----A-NSVTNLRLVWCRLEQPF------DSIML-CSLKKLTLERVCLDEQMVQ-  209 (360)
Q Consensus       143 ~l~~L~~~l~~~~~~~~~l~~~l~~----~-~~L~~L~L~~~~~~~~~------~~~~~-~~L~~L~L~~~~~~~~~l~-  209 (360)
                      ++++|+  +..+..... .+..+..    . ++|++|++++|.+....      ....+ ++|++|.++++.+++.... 
T Consensus        52 ~L~~L~--Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           52 SVTSLN--LSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             TCCEEE--CCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             ceeEEE--CcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            799999  654432221 1222222    2 89999999999877543      12334 7899999999988544443 


Q ss_pred             --HHHhc-CCcccEEEeecCCCCCc--cc----cccCC-CccEEEecccc-c--hhhh---HhhcC-CCccEEEEEeecC
Q 018106          210 --KLASE-CPLLEDLCFSNCWGLKH--LC----VSKAS-KLKIMEIRSFS-E--EIEI---VEISV-PSLQQLTLLFYGA  272 (360)
Q Consensus       210 --~l~~~-cp~Le~L~l~~c~~~~~--~~----i~~l~-~L~~L~l~~~~-~--~~~~---~~~~~-p~L~~L~l~~~~~  272 (360)
                        ..+.. +++|++|++.+|.....  ..    +...+ +|++|++++|. .  ....   ..... ++|++|+++.+..
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence              33444 56999999998854221  11    12334 99999999886 1  1111   12244 4899999996554


Q ss_pred             CCcc----eeeccC-CCCccEEEeeccccCc---HHHHHHhcCCCCCCEEEecCcC---C----hhhhh---hcCCccce
Q 018106          273 RRPR----VVEVAR-SPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDLFVTRCC---L----PGKIK---ISSNQLKN  334 (360)
Q Consensus       273 ~~~~----~~~~~~-~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~L~~c~---~----~~~i~---~~~~~L~~  334 (360)
                      ....    ...+.. .++|+.|+++++.+++   ..+...+..+++|++|++++|.   .    ...+.   ...++|+.
T Consensus       209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~  288 (362)
T 3goz_A          209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL  288 (362)
T ss_dssp             GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred             ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence            3311    112233 4699999999988877   4445667788999999999883   1    22222   24556777


Q ss_pred             Eeccccc
Q 018106          335 LLFRSCK  341 (360)
Q Consensus       335 L~l~~c~  341 (360)
                      |++++..
T Consensus       289 LdL~~N~  295 (362)
T 3goz_A          289 VDKNGKE  295 (362)
T ss_dssp             ECTTSCB
T ss_pred             EecCCCc
Confidence            7777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=1.2e-09  Score=107.09  Aligned_cols=105  Identities=18%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             cccCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCC
Q 018106          234 VSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (360)
Q Consensus       234 i~~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  311 (360)
                      +..+++|+.|+++++. ... ......+++|+.|+++.+.... .+..+..+|+|+.|+++++.++.  +...+..+++|
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L  326 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRL  326 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTC
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc--cCcccccCCCC
Confidence            3456788888888776 111 1223367899999999554432 34445678999999999988764  22224568999


Q ss_pred             CEEEecCcCChhhhhhcCCccceEeccccc
Q 018106          312 EDLFVTRCCLPGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       312 ~~L~L~~c~~~~~i~~~~~~L~~L~l~~c~  341 (360)
                      ++|+|++|.....-...+++|+.|+++++.
T Consensus       327 ~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          327 ENLYLDHNSIVTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             SEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred             CEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence            999999984333224567899999998764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.98  E-value=2.1e-09  Score=99.61  Aligned_cols=60  Identities=22%  Similarity=0.179  Sum_probs=34.3

Q ss_pred             ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEecccc
Q 018106          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c  340 (360)
                      +..+++|+.|+++++.++... ...+..+++|++|++++|..  +.......++|+.|+++++
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred             HcCCCCccEEECCCCcCCCcC-hhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence            455667777777666654421 22345567777777776621  1112234567777777766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.98  E-value=7.6e-10  Score=110.17  Aligned_cols=127  Identities=18%  Similarity=0.053  Sum_probs=68.0

Q ss_pred             HhcCCcccEEEeecCCCCCc--cccccCCCccEEEeccccchhhhH------------hhcCCCccEEEEEeecCCCcce
Q 018106          212 ASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIV------------EISVPSLQQLTLLFYGARRPRV  277 (360)
Q Consensus       212 ~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~~~~~~~------------~~~~p~L~~L~l~~~~~~~~~~  277 (360)
                      +..+++|+.|++.+|.....  ..+.++++|+.|+++++.  +..+            ...+++|+.|+++.+....-..
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN--LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC--ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence            34555666666655532111  112345667777766654  1111            1245667777776444332111


Q ss_pred             eeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC---hhhhhh-cCCccceEeccccc
Q 018106          278 VEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL---PGKIKI-SSNQLKNLLFRSCK  341 (360)
Q Consensus       278 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i~~-~~~~L~~L~l~~c~  341 (360)
                      ..+..+++|+.|+++++.++.- ....+..+++|++|++++|..   ...... .+++|+.|++.+++
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             HHcccccCcceeECCCCCCCcC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence            2356677777777777666531 222345677788888877621   112222 46778888877643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.97  E-value=6.5e-10  Score=96.68  Aligned_cols=157  Identities=14%  Similarity=0.057  Sum_probs=107.5

Q ss_pred             ccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--ccc
Q 018106          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCV  234 (360)
Q Consensus       159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i  234 (360)
                      ..+|..+.  ++|+.|++.++.+....  ....+++|++|.++++.++.... ..+..+++|++|++.++.....  -.+
T Consensus        27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~  103 (251)
T 3m19_A           27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANNQLASLPLGVF  103 (251)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCCcccccChhHh
Confidence            34444332  68999999998876443  35678999999999988743221 2356789999999998764321  123


Q ss_pred             ccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCC
Q 018106          235 SKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  312 (360)
Q Consensus       235 ~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  312 (360)
                      ..+++|+.|+++++. ..+.. ....+++|+.|+++.+.........+..+++|+.|+++++.++.. ....+..+++|+
T Consensus       104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~  182 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQ  182 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCC
T ss_pred             cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCC
Confidence            457899999998886 22211 123578899999986655433333467789999999988877643 223456788999


Q ss_pred             EEEecCc
Q 018106          313 DLFVTRC  319 (360)
Q Consensus       313 ~L~L~~c  319 (360)
                      +|++.+|
T Consensus       183 ~L~l~~N  189 (251)
T 3m19_A          183 TITLFGN  189 (251)
T ss_dssp             EEECCSC
T ss_pred             EEEeeCC
Confidence            9999887

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.95  E-value=3.5e-10  Score=73.00  Aligned_cols=40  Identities=23%  Similarity=0.332  Sum_probs=34.1

Q ss_pred             ccccccCCchHHHHHHhcCCChhhhhhhcccccchhhhhc
Q 018106           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   55 (360)
Q Consensus        16 ~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~   55 (360)
                      +.+.++.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4578999999999999999999999999999999998654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.95  E-value=5.5e-10  Score=101.28  Aligned_cols=82  Identities=10%  Similarity=-0.028  Sum_probs=45.8

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      +++++|+  +..+... ...+..+..+++|++|++.++.+...+ ...+++|++|.++++.++.-. ...+..+++|+.|
T Consensus        78 ~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L  152 (332)
T 2ft3_A           78 QHLYALV--LVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIP-PNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCI  152 (332)
T ss_dssp             TTCCEEE--CCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCC-SSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEE
T ss_pred             CCCcEEE--CCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccC-ccccccCCEEECCCCccCccC-HhHhCCCccCCEE
Confidence            4677777  4332211 122334455677777777777665322 122367777777777663211 1224667777777


Q ss_pred             EeecCCC
Q 018106          222 CFSNCWG  228 (360)
Q Consensus       222 ~l~~c~~  228 (360)
                      ++.++..
T Consensus       153 ~l~~n~l  159 (332)
T 2ft3_A          153 EMGGNPL  159 (332)
T ss_dssp             ECCSCCC
T ss_pred             ECCCCcc
Confidence            7776643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.95  E-value=2.7e-09  Score=98.00  Aligned_cols=197  Identities=17%  Similarity=0.104  Sum_probs=129.7

Q ss_pred             cCceEEEeecccCCCccccC---cccccccC-CccEEEEeeeeccCCC--CccC-----CCCCCEEEeeeEEeCh---HH
Q 018106          142 NGVRELDFENITDENTVYTL---PQAIFSAN-SVTNLRLVWCRLEQPF--DSIM-----LCSLKKLTLERVCLDE---QM  207 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l---~~~l~~~~-~L~~L~L~~~~~~~~~--~~~~-----~~~L~~L~L~~~~~~~---~~  207 (360)
                      .++++|+  +..+.......   ...+...+ +|++|++++|.+....  ....     +++|++|+++++.+++   ..
T Consensus        22 ~~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           22 HGVTSLD--LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             TTCCEEE--CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCceEEE--ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            4599999  65443322211   13344566 8999999999887553  1112     3899999999999843   34


Q ss_pred             HHHHHhcC-CcccEEEeecCCCCCcccc-------cc-CCCccEEEecccc-c--hhhhH---hhcCC-CccEEEEEeec
Q 018106          208 VQKLASEC-PLLEDLCFSNCWGLKHLCV-------SK-ASKLKIMEIRSFS-E--EIEIV---EISVP-SLQQLTLLFYG  271 (360)
Q Consensus       208 l~~l~~~c-p~Le~L~l~~c~~~~~~~i-------~~-l~~L~~L~l~~~~-~--~~~~~---~~~~p-~L~~L~l~~~~  271 (360)
                      +...+..+ ++|++|++.+|.. +....       .. .++|++|++++|. .  ....+   ....+ +|++|+++.+.
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence            55556666 8999999999874 32221       12 2599999999886 1  11222   12344 89999999665


Q ss_pred             CCCccee----eccCC-CCccEEEeeccccCcHH---HHHHhcC-CCCCCEEEecCcCCh-------hhhhhcCCccceE
Q 018106          272 ARRPRVV----EVARS-PHLKKLDLVSVYFADNE---FNHLISK-FPSLEDLFVTRCCLP-------GKIKISSNQLKNL  335 (360)
Q Consensus       272 ~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~---~~~~~~~-~~~L~~L~L~~c~~~-------~~i~~~~~~L~~L  335 (360)
                      .......    .+..+ ++|+.|+++++.+++..   +...+.. .++|++|+|++|...       ..+....++|+.|
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            5333222    23445 59999999999887733   3333333 469999999998321       1223466899999


Q ss_pred             eccccc
Q 018106          336 LFRSCK  341 (360)
Q Consensus       336 ~l~~c~  341 (360)
                      +++++.
T Consensus       259 ~L~~n~  264 (362)
T 3goz_A          259 YLDYDI  264 (362)
T ss_dssp             EEEHHH
T ss_pred             EeccCC
Confidence            999885

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.94  E-value=7.3e-10  Score=95.56  Aligned_cols=173  Identities=15%  Similarity=0.035  Sum_probs=93.5

Q ss_pred             ccccCCccEEEEeeee-ccCCC--CccCCCCCCEEEeee-EEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCc
Q 018106          165 IFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLER-VCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKL  240 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~-~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L  240 (360)
                      +..+++|++|++.++. +....  ....+++|++|.+++ +.++.-. ...+..+++|++|++.+|.....-.+..+++|
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L  129 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKMFPDLTKVYST  129 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCSCCCCTTCCBC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcccccccccccc
Confidence            3446777888877775 43221  345677778887776 4443111 11245677788888777653221113344555


Q ss_pred             c---EEEeccc-c-chhhh-HhhcCCCcc-EEEEEeecCCCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcCC-CCC
Q 018106          241 K---IMEIRSF-S-EEIEI-VEISVPSLQ-QLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKF-PSL  311 (360)
Q Consensus       241 ~---~L~l~~~-~-~~~~~-~~~~~p~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~-~~L  311 (360)
                      +   .|+++++ . ..+.. ....+++|+ +|+++.+... ..+...-..++|+.|++.++. ++.- ....+..+ ++|
T Consensus       130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L  207 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGP  207 (239)
T ss_dssp             CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEE-CTTTTTTCSBCC
T ss_pred             ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccC-CHHHhhccccCC
Confidence            5   7777766 3 11111 122466777 7777644332 111111122677888887763 5431 12235566 778


Q ss_pred             CEEEecCcCChhhhh-hcCCccceEeccccc
Q 018106          312 EDLFVTRCCLPGKIK-ISSNQLKNLLFRSCK  341 (360)
Q Consensus       312 ~~L~L~~c~~~~~i~-~~~~~L~~L~l~~c~  341 (360)
                      ++|+++++.. ..+. ...++|+.|++.++.
T Consensus       208 ~~L~l~~N~l-~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          208 SLLDVSQTSV-TALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             SEEECTTCCC-CCCCCTTCTTCSEEECTTC-
T ss_pred             cEEECCCCcc-ccCChhHhccCceeeccCcc
Confidence            8888877622 1221 245677777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.94  E-value=9.6e-10  Score=95.58  Aligned_cols=131  Identities=19%  Similarity=0.120  Sum_probs=70.3

Q ss_pred             ccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCC
Q 018106          165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASK  239 (360)
Q Consensus       165 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~  239 (360)
                      +..+++|++|++.++.+....  ....+++|++|.++++.++.-.. ..+..+++|++|++.++.. ..+.   +..+++
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~  132 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTK  132 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT
T ss_pred             hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcC-CCcChhHhccCCc
Confidence            344667777777776654332  23456677777776666532111 2245566777777766643 2211   234567


Q ss_pred             ccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106          240 LKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (360)
Q Consensus       240 L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (360)
                      |+.|+++++. ..+.. ..-.+++|+.|++..+.........+..+++|+.|++.++.+.
T Consensus       133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            7777776664 11111 1124566777777644443322234456667777777666553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.94  E-value=7.7e-10  Score=98.42  Aligned_cols=171  Identities=15%  Similarity=0.010  Sum_probs=119.3

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .+++.|+  +....... ..+..+...++|++|++.++.+........+++|++|.++++.++  .+...+..+++|+.|
T Consensus        31 ~~l~~L~--L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           31 KDTTILH--LSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVL  105 (290)
T ss_dssp             TTCCEEE--CTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEE
T ss_pred             CCCCEEE--cCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEE
Confidence            5788888  64433221 123345568999999999988764433467899999999999874  222345788999999


Q ss_pred             EeecCCCCCc--cccccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106          222 CFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (360)
Q Consensus       222 ~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (360)
                      ++.++.....  -.+..+++|+.|.++++. ..+. ......++|+.|+++.+....-....+..+++|+.|+++++.++
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            9998864322  224567899999999886 2221 11236789999999966554333334577899999999998876


Q ss_pred             cHHHHHHhcCCCCCCEEEecCc
Q 018106          298 DNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       298 ~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      .  +...+...++|++|+|.++
T Consensus       186 ~--ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          186 T--IPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             C--CCTTTTTTCCCSEEECCSC
T ss_pred             c--cChhhcccccCCeEEeCCC
Confidence            3  2223445678999999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.93  E-value=2e-09  Score=106.29  Aligned_cols=147  Identities=13%  Similarity=0.101  Sum_probs=81.1

Q ss_pred             CCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcccccc----------CCCccEEEecccc-chhhhHhh-
Q 018106          190 LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK----------ASKLKIMEIRSFS-EEIEIVEI-  257 (360)
Q Consensus       190 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----------l~~L~~L~l~~~~-~~~~~~~~-  257 (360)
                      +++|++|.++++.++ .....++..+++|++|++.+|... .+....          +++|+.|+++++. ..+..... 
T Consensus       432 ~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          432 GINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             CCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence            346666666666654 111233455677777777766432 222111          1277777777765 22221122 


Q ss_pred             -cCCCccEEEEEeecCCCcceeeccCCCCccEEEeec------cccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh-cC
Q 018106          258 -SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS------VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SS  329 (360)
Q Consensus       258 -~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~-~~  329 (360)
                       .+++|+.|+++.+.... .+..+..+++|+.|++++      +.+... +...+..+++|++|+|++|.. ..+.. ..
T Consensus       510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence             56777777777554443 444566677777777743      333222 122345677788888877733 22221 23


Q ss_pred             CccceEeccccc
Q 018106          330 NQLKNLLFRSCK  341 (360)
Q Consensus       330 ~~L~~L~l~~c~  341 (360)
                      ++|+.|++++++
T Consensus       587 ~~L~~L~Ls~N~  598 (636)
T 4eco_A          587 PNISVLDIKDNP  598 (636)
T ss_dssp             TTCCEEECCSCT
T ss_pred             CcCCEEECcCCC
Confidence            677788777764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.93  E-value=1.6e-09  Score=104.32  Aligned_cols=15  Identities=20%  Similarity=0.226  Sum_probs=7.9

Q ss_pred             HHHHHHHHcCceEEE
Q 018106          134 RWIRLAVENGVRELD  148 (360)
Q Consensus       134 ~~l~~~~~~~l~~L~  148 (360)
                      .+.......++++++
T Consensus       239 ~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          239 RILQLVWHTTVWYFS  253 (520)
T ss_dssp             HHHHHHHTSSCSEEE
T ss_pred             HHHHHhhhCcccEEE
Confidence            333333345677777

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.93  E-value=8.2e-10  Score=109.11  Aligned_cols=177  Identities=9%  Similarity=0.022  Sum_probs=100.1

Q ss_pred             Cccccc--ccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEE-eChHHHHHHHh------cCCcccEEEeecCCCC
Q 018106          161 LPQAIF--SANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVC-LDEQMVQKLAS------ECPLLEDLCFSNCWGL  229 (360)
Q Consensus       161 l~~~l~--~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~------~cp~Le~L~l~~c~~~  229 (360)
                      +|..+.  .+++|++|++.+|.+...  .....+++|++|.++++. ++...+..-+.      .+++|++|++.+|...
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            788888  899999999999875432  245678999999999997 66522322222      3588888888887643


Q ss_pred             Ccc----ccccCCCccEEEecccc-c-hhhhHhhcCCCccEEEEEeecCCCcceeeccCCC-------------------
Q 018106          230 KHL----CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSP-------------------  284 (360)
Q Consensus       230 ~~~----~i~~l~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~-------------------  284 (360)
                       .+    .+..+++|+.|++.++. . .+. ....+++|+.|+++.+... ..+..+..++                   
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~  395 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNI  395 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchh
Confidence             32    24456777777777665 1 121 1113344555555422211 1111122333                   


Q ss_pred             -------CccEEEeeccccCcHHHHHHhc-------CCCCCCEEEecCcCC---hhhhhhcCCccceEeccccc
Q 018106          285 -------HLKKLDLVSVYFADNEFNHLIS-------KFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       285 -------~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~L~~c~~---~~~i~~~~~~L~~L~l~~c~  341 (360)
                             +|+.|+++++.++..... .+.       .+++|++|++++|..   ...+...+++|+.|+++++.
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred             hhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence                   555555555554432111 122       345677777776621   12233346777777777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.92  E-value=7.6e-10  Score=107.25  Aligned_cols=179  Identities=13%  Similarity=0.099  Sum_probs=126.7

Q ss_pred             ccCcccccccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--cc
Q 018106          159 YTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CV  234 (360)
Q Consensus       159 ~~l~~~l~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i  234 (360)
                      ..+|..+.  ++|++|++.++.+...  .....+++|++|.++++.++.... ..+..+++|++|++.+|......  .+
T Consensus        18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~   94 (549)
T 2z81_A           18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWF   94 (549)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred             ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHHh
Confidence            34554332  7899999999987533  245788999999999998743222 23578999999999998653322  25


Q ss_pred             ccCCCccEEEecccc-ch--hhhHhhcCCCccEEEEEeecCCCcce-eeccCCCCccEEEeeccccCcHHHHHHhcCCCC
Q 018106          235 SKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADNEFNHLISKFPS  310 (360)
Q Consensus       235 ~~l~~L~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  310 (360)
                      ..+++|++|+++++. ..  .......+++|++|+++.+....... ..+..+++|++|++.++.++... ...+..+++
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~  173 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRD  173 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSE
T ss_pred             ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhcccc
Confidence            678999999999886 11  11223467899999999665322222 35788999999999998876542 334667899


Q ss_pred             CCEEEecCcCC--h-hhhhhcCCccceEeccccc
Q 018106          311 LEDLFVTRCCL--P-GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       311 L~~L~L~~c~~--~-~~i~~~~~~L~~L~l~~c~  341 (360)
                      |++|++..+..  . ..+...+++|+.|+++++.
T Consensus       174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred             CceEecccCcccccchhhHhhcccccEEEccCCc
Confidence            99999998732  2 2223457889999988764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.92  E-value=1.6e-09  Score=95.00  Aligned_cols=143  Identities=13%  Similarity=0.088  Sum_probs=79.5

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~  246 (360)
                      .+++|+.|++.++.+........+++|+.|.++++.+++-..   +..+++|++|++.+|..-..-.+.. ++|+.|+++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~  114 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLD  114 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECC
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEEcc
Confidence            456666666666655443334456666666666666532111   5566667777666664322112222 566666666


Q ss_pred             ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ++. ..+.. ...+++|+.|+++.+.....  ..+..+++|+.|+++++.+++.   ..+..+++|++|++++|
T Consensus       115 ~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          115 NNELRDTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             SSCCSBSGG-GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred             CCccCCChh-hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence            664 12211 22456666666664433221  1355667777777777666554   33556677777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.91  E-value=1e-09  Score=89.23  Aligned_cols=61  Identities=20%  Similarity=0.178  Sum_probs=32.9

Q ss_pred             CCCccEEEEEeecCCCc-ceeeccCCCCccEEEeeccccCcHH--HHHHhcCCCCCCEEEecCc
Q 018106          259 VPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVYFADNE--FNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       259 ~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~c  319 (360)
                      +|+|++|+++.+..... ....+..+++|+.|+++++.++...  ....+..+++|++|++.+|
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            45555555553333221 1134456677777777766654421  1234566777777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.91  E-value=6.6e-09  Score=100.00  Aligned_cols=170  Identities=14%  Similarity=0.120  Sum_probs=109.7

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEEeCh-HHHHHHHhcCCcc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDE-QMVQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~L  218 (360)
                      .+++.|+  +..........+   ..+++|++|++++|.+...  .....+++|+.|.++++.++. ..+...+..+++|
T Consensus       302 ~~L~~L~--l~~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L  376 (520)
T 2z7x_B          302 MNIKNFT--VSGTRMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL  376 (520)
T ss_dssp             CCCSEEE--EESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred             CceeEEE--cCCCccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence            5677777  443322222211   3567888888888877652  244677888888888888753 3445557788888


Q ss_pred             cEEEeecCCCCCccc---cccCCCccEEEeccccchhhhHhhcC-CCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106          219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVEISV-PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (360)
Q Consensus       219 e~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~~~~~~~~~~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (360)
                      ++|++.+|.....+.   +..+++|+.|+++++. -...+.... ++|+.|+++.+... ..+..+..+++|+.|+++++
T Consensus       377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence            888888876543233   3345788888888875 112222222 68888888865543 33444457888888888887


Q ss_pred             ccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          295 YFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      .++.- ....+..+++|++|++++|
T Consensus       455 ~l~~l-~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          455 QLKSV-PDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             cCCcc-CHHHhccCCcccEEECcCC
Confidence            76641 1123567788888888877

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.90  E-value=4.6e-10  Score=98.44  Aligned_cols=163  Identities=10%  Similarity=0.017  Sum_probs=117.4

Q ss_pred             CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccc
Q 018106          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~  248 (360)
                      .+++.+.+.++.+........+++|++|.++++.++.-.   -+..+++|++|++.+|.......+..+++|+.|+++++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            345555555555443323457899999999999874322   26789999999999986544334677899999999998


Q ss_pred             c-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh-hhh
Q 018106          249 S-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIK  326 (360)
Q Consensus       249 ~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~-~i~  326 (360)
                      . ..+..+.  .++|+.|+++.+.....  ..+..+++|+.|+++++.+++-.   .+..+++|++|++++|.... ...
T Consensus        96 ~l~~l~~~~--~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~~l  168 (263)
T 1xeu_A           96 RLKNLNGIP--SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTGGL  168 (263)
T ss_dssp             CCSCCTTCC--CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCTTS
T ss_pred             ccCCcCccc--cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchHHh
Confidence            6 2222222  28999999996655432  24788999999999999887642   47789999999999983211 334


Q ss_pred             hcCCccceEeccccc
Q 018106          327 ISSNQLKNLLFRSCK  341 (360)
Q Consensus       327 ~~~~~L~~L~l~~c~  341 (360)
                      ..+++|+.|+++++.
T Consensus       169 ~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTCCCCCEEEEEEEE
T ss_pred             ccCCCCCEEeCCCCc
Confidence            467899999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.90  E-value=7.4e-10  Score=95.53  Aligned_cols=168  Identities=13%  Similarity=-0.003  Sum_probs=115.6

Q ss_pred             CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEE-eChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccE
Q 018106          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKI  242 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~  242 (360)
                      ++|+.|++.++.+....  ....+++|++|.++++. ++.-.- ..+..+++|++|++.+|..+..+.   +..+++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            48999999998875332  35678999999999986 532111 125789999999999855555443   346799999


Q ss_pred             EEecccc-chhhhHhhcCCCcc---EEEEEee-cCCCcceeeccCCCCcc-EEEeeccccCcHHHHHHhcCCCCCCEEEe
Q 018106          243 MEIRSFS-EEIEIVEISVPSLQ---QLTLLFY-GARRPRVVEVARSPHLK-KLDLVSVYFADNEFNHLISKFPSLEDLFV  316 (360)
Q Consensus       243 L~l~~~~-~~~~~~~~~~p~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~L  316 (360)
                      |++.++. ..+.. ...+++|+   +|+++.+ ....-....+..+++|+ .|+++++.++.- ....+.. ++|++|++
T Consensus       110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEc
Confidence            9999886 22222 23566777   9999855 33222222367889999 999998877631 1223344 78999999


Q ss_pred             cCcCChhhh----hhcC-CccceEecccc
Q 018106          317 TRCCLPGKI----KISS-NQLKNLLFRSC  340 (360)
Q Consensus       317 ~~c~~~~~i----~~~~-~~L~~L~l~~c  340 (360)
                      .+|..+..+    ...+ ++|+.|++++.
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCC
Confidence            998433333    3456 89999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.89  E-value=2.4e-09  Score=94.35  Aligned_cols=180  Identities=17%  Similarity=0.116  Sum_probs=120.5

Q ss_pred             cccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cc
Q 018106          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LC  233 (360)
Q Consensus       158 ~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~  233 (360)
                      ...+|..+  .++|++|++.++.+....  ....+++|++|.++++.++.-.. ..+..+++|++|++.++.....  -.
T Consensus        19 l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhh
Confidence            34455433  367999999998875332  45678999999999997742221 2357789999999998864222  22


Q ss_pred             cccCCCccEEEecccc-chhhhH-hhcCCCccEEEEEeecCCC-cceeeccCCCCccEEEeeccccCcH---HHHHHhcC
Q 018106          234 VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN---EFNHLISK  307 (360)
Q Consensus       234 i~~l~~L~~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~  307 (360)
                      +..+++|+.|.+.++. ..+... ...+++|++|+++.+.... ..+..+..+++|+.|+++++.++..   .+.. +..
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~  174 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ  174 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence            4567999999999886 222221 2367899999999655433 2345678899999999999887652   2222 334


Q ss_pred             CCCCC-EEEecCcCCh--hhhhhcCCccceEeccccc
Q 018106          308 FPSLE-DLFVTRCCLP--GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       308 ~~~L~-~L~L~~c~~~--~~i~~~~~~L~~L~l~~c~  341 (360)
                      ++.|. +|+++++...  ........+|+.|+++++.
T Consensus       175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ  211 (276)
T ss_dssp             CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred             ccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence            44444 8999887322  1111234489999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.89  E-value=1.9e-09  Score=109.49  Aligned_cols=133  Identities=11%  Similarity=0.060  Sum_probs=82.0

Q ss_pred             Cccccc--ccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEE-eChHHHHHHH-------hcCCcccEEEeecCCC
Q 018106          161 LPQAIF--SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLA-------SECPLLEDLCFSNCWG  228 (360)
Q Consensus       161 l~~~l~--~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~-------~~cp~Le~L~l~~c~~  228 (360)
                      +|..+.  .+++|+.|+|.+|.+....  ....+++|+.|.++++. ++...+..-+       ..+|+|+.|++.+|..
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            777776  7899999999998754322  45678899999999987 6541222212       3456888888888764


Q ss_pred             CCcc----ccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCC-ccEEEeecccc
Q 018106          229 LKHL----CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH-LKKLDLVSVYF  296 (360)
Q Consensus       229 ~~~~----~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~  296 (360)
                      . .+    .+..+++|+.|+++++. ..+. ....+++|+.|+++.+... ..+..+..+++ |+.|+++++.+
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence            3 32    24456788888887765 1111 1124566677777644433 23333444555 66666655544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.88  E-value=3.5e-09  Score=108.01  Aligned_cols=38  Identities=18%  Similarity=0.165  Sum_probs=19.0

Q ss_pred             cccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEe
Q 018106          166 FSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL  203 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~  203 (360)
                      ..+++|++|++++|.+....   ....+++|++|.++++.+
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            34555555555555543221   234455556665555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=6e-09  Score=105.77  Aligned_cols=146  Identities=14%  Similarity=0.104  Sum_probs=85.5

Q ss_pred             CCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccc----------cCCCccEEEecccc-chhhhHhh--c
Q 018106          192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----------KASKLKIMEIRSFS-EEIEIVEI--S  258 (360)
Q Consensus       192 ~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~----------~l~~L~~L~l~~~~-~~~~~~~~--~  258 (360)
                      +|+.|.++++.++ .....++..+++|+.|++.+|.. ..+...          ++++|+.|++++|. ..+.....  .
T Consensus       674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~  751 (876)
T 4ecn_A          674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT  751 (876)
T ss_dssp             CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred             CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence            5666666666654 11223445677788888777643 222211          12378888887775 22222222  5


Q ss_pred             CCCccEEEEEeecCCCcceeeccCCCCccEEEeec------cccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh-cCCc
Q 018106          259 VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS------VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SSNQ  331 (360)
Q Consensus       259 ~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~-~~~~  331 (360)
                      +|+|+.|+++.+.... .+..+..+++|+.|+|++      +.+... +...+..+++|++|+|++|.. ..+.. ..++
T Consensus       752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~  828 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQ  828 (876)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCCCSS
T ss_pred             CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCC-CccCHhhcCC
Confidence            6788888887554433 444566778888888865      333322 222355678888888888743 33332 2357


Q ss_pred             cceEecccccc
Q 018106          332 LKNLLFRSCKY  342 (360)
Q Consensus       332 L~~L~l~~c~~  342 (360)
                      |+.|+|++++.
T Consensus       829 L~~LdLs~N~l  839 (876)
T 4ecn_A          829 LYILDIADNPN  839 (876)
T ss_dssp             SCEEECCSCTT
T ss_pred             CCEEECCCCCC
Confidence            88888887753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.88  E-value=5.8e-10  Score=88.74  Aligned_cols=16  Identities=31%  Similarity=0.403  Sum_probs=7.5

Q ss_pred             cCCCCccEEEeecccc
Q 018106          281 ARSPHLKKLDLVSVYF  296 (360)
Q Consensus       281 ~~~~~L~~L~l~~~~~  296 (360)
                      ..+++|+.|+++++.+
T Consensus       110 ~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A          110 KKLENLKSLDLFNCEV  125 (149)
T ss_dssp             GGCTTCCEEECTTCGG
T ss_pred             hhCCCCCEEeCcCCcc
Confidence            3444455555544443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.87  E-value=7.5e-09  Score=102.96  Aligned_cols=13  Identities=15%  Similarity=0.439  Sum_probs=8.9

Q ss_pred             CCccceEeccccc
Q 018106          329 SNQLKNLLFRSCK  341 (360)
Q Consensus       329 ~~~L~~L~l~~c~  341 (360)
                      .++|+.|++.++.
T Consensus       221 ~~~L~~L~L~~n~  233 (680)
T 1ziw_A          221 NTSIRNLSLSNSQ  233 (680)
T ss_dssp             TSCCCEEECTTSC
T ss_pred             hccccEEEccCCc
Confidence            3677888877663

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=6.4e-09  Score=95.17  Aligned_cols=137  Identities=20%  Similarity=0.189  Sum_probs=88.8

Q ss_pred             HHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecccc---chhhhHhh-cCCCccEEEEEee--cCC-Cc-c--
Q 018106          207 MVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS---EEIEIVEI-SVPSLQQLTLLFY--GAR-RP-R--  276 (360)
Q Consensus       207 ~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~---~~~~~~~~-~~p~L~~L~l~~~--~~~-~~-~--  276 (360)
                      ++..++..+|+|++|.|.++.......+. +++|++|.+..|.   ..+..+.. .+|+|++|.++.+  ... .. .  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            45677888999999999887443322233 5899999998776   22333332 6899999998621  111 10 1  


Q ss_pred             ---eeeccCCCCccEEEeeccccCcHHHHHHh--cCCCCCCEEEecCcCChh----hhh---hcCCccceEecccccccc
Q 018106          277 ---VVEVARSPHLKKLDLVSVYFADNEFNHLI--SKFPSLEDLFVTRCCLPG----KIK---ISSNQLKNLLFRSCKYLK  344 (360)
Q Consensus       277 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~L~~c~~~~----~i~---~~~~~L~~L~l~~c~~l~  344 (360)
                         ......+|+|+.|++.++.+.+.....+.  ..+|+|++|+|+.|....    .+.   ..+++|+.|++++|. ++
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~  320 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS  320 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence               11224589999999988887765444443  357899999998763222    122   346789999998773 44


Q ss_pred             c
Q 018106          345 S  345 (360)
Q Consensus       345 ~  345 (360)
                      +
T Consensus       321 d  321 (362)
T 2ra8_A          321 D  321 (362)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.85  E-value=3.1e-09  Score=108.37  Aligned_cols=57  Identities=12%  Similarity=0.098  Sum_probs=36.8

Q ss_pred             CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106          284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~  341 (360)
                      ++|+.|+++++.+... ....+..+++|++|+|.+|...   ......+++|+.|+++++.
T Consensus       266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence            5677777776665442 1233566788888888887322   2233457788888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.84  E-value=1.7e-09  Score=98.01  Aligned_cols=168  Identities=14%  Similarity=0.063  Sum_probs=99.5

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHH-HHHHHhcCCcc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQM-VQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~L  218 (360)
                      +++++|+  +.....  ..+|..++  ++|++|++.++.+....  ....+++|++|.++++.++... ....+... +|
T Consensus       102 ~~L~~L~--L~~n~l--~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L  174 (332)
T 2ft3_A          102 RKLQKLY--ISKNHL--VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL  174 (332)
T ss_dssp             TTCCEEE--CCSSCC--CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred             CCCCEEE--CCCCcC--CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence            5788888  543322  24444443  78999999988776443  3467889999999888774321 11223333 78


Q ss_pred             cEEEeecCCCCCccccccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       219 e~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      ++|++.++.. ..+...-.++|+.|+++++. .... .....+++|+.|+++.+.........+..+++|+.|+++++.+
T Consensus       175 ~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          175 NYLRISEAKL-TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             SCCBCCSSBC-SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             CEEECcCCCC-CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence            8888877653 22222222577777777664 1111 1122556777777775444333333456677777777777666


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +.  +...+..+++|++|++++|
T Consensus       254 ~~--lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          254 SR--VPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CB--CCTTGGGCTTCCEEECCSS
T ss_pred             ee--cChhhhcCccCCEEECCCC
Confidence            52  2222556777777777776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.84  E-value=1.8e-09  Score=96.94  Aligned_cols=172  Identities=16%  Similarity=0.105  Sum_probs=117.8

Q ss_pred             cCCccEEEEeeeeccCCC--Cc--cCCCCCCEEEeeeEEeChHH--HH-HHHhcCCcccEEEeecCCCCCcc--ccccCC
Q 018106          168 ANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQM--VQ-KLASECPLLEDLCFSNCWGLKHL--CVSKAS  238 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~--~~--~~~~~L~~L~L~~~~~~~~~--l~-~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~  238 (360)
                      .++|++|++.+|.+....  ..  ..+++|++|.++++.++...  +. .-+..+++|++|++.+|......  .+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            567999999999876433  22  67899999999999985311  11 12348999999999998753322  344679


Q ss_pred             CccEEEecccc-chhhhH-----hhcCCCccEEEEEeecCCCccee---eccCCCCccEEEeeccccCcHHHHHHhcCC-
Q 018106          239 KLKIMEIRSFS-EEIEIV-----EISVPSLQQLTLLFYGARRPRVV---EVARSPHLKKLDLVSVYFADNEFNHLISKF-  308 (360)
Q Consensus       239 ~L~~L~l~~~~-~~~~~~-----~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-  308 (360)
                      +|+.|+++++. .....+     ...+|+|++|.++.+........   .+..+++|++|+++++.+++..... +..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence            99999999986 221112     13678999999996655321111   2467899999999998876642111 2233 


Q ss_pred             --CCCCEEEecCcCChhhhhh-cCCccceEeccccc
Q 018106          309 --PSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCK  341 (360)
Q Consensus       309 --~~L~~L~L~~c~~~~~i~~-~~~~L~~L~l~~c~  341 (360)
                        ++|++|++++|... .+.. .+++|+.|+++++.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~  283 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNR  283 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCc
Confidence              79999999998322 2221 24799999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.83  E-value=4e-08  Score=95.57  Aligned_cols=38  Identities=18%  Similarity=0.169  Sum_probs=17.4

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeec
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRL  181 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~  181 (360)
                      .++++|+  +..+.......|..+..+++|++|++.++.+
T Consensus       121 ~~L~~L~--Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          121 ASLRHLD--LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             TTCSEEE--CCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             ccCCEEE--CCCCCccccCchHhhcccCcccEEecCCCcc
Confidence            3455555  4333332333334444455555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.78  E-value=4.1e-09  Score=88.75  Aligned_cols=143  Identities=17%  Similarity=0.016  Sum_probs=75.6

Q ss_pred             cCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEE
Q 018106          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIM  243 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L  243 (360)
                      .++|++|++.++.+....  ....+++|++|.++++.++.-. ...+..+++|++|++.++.....  ..+..+++|+.|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            357788888887765333  2346777888888777663211 12345677788888777643221  112345677777


Q ss_pred             Eecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          244 EIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       244 ~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +++++. ..+.. ....+++|++|++..+.........+..+++|+.|++.++.+.        ..+++|+.|.++.+
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWIN  175 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHH
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHH
Confidence            776664 11111 1123455666666543332222222445566666666555432        23455555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=2.5e-07  Score=84.53  Aligned_cols=197  Identities=15%  Similarity=0.078  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhhhhcCCcccceEEEEeecCCCC-CC-hhhHHHHHHHHH-HcCceEEEeecccCCC--------ccccCc
Q 018106           94 KFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GS-APIVDRWIRLAV-ENGVRELDFENITDEN--------TVYTLP  162 (360)
Q Consensus        94 ~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~-~~-~~~~~~~l~~~~-~~~l~~L~~~l~~~~~--------~~~~l~  162 (360)
                      .+.+.+.+++.  ......++.+.+..-.  ++ .. ...+..+...+. .++|+.|.  +.....        ....+.
T Consensus        92 ~~~~~~~~fl~--~~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~--l~~~~~e~~~is~~~~~~L~  165 (362)
T 2ra8_A           92 EGVNLMDKILK--DKKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLF--WGDIDFEEQEISWIEQVDLS  165 (362)
T ss_dssp             TTCCHHHHHHH--CTTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEE--ECCCCTTTCCGGGCBCCBCH
T ss_pred             cHHHHHHHHhc--CCCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhhee--ecCcchhhcccccccccCHH
Confidence            33445555552  2234457777666322  22 11 123444444333 37999998  422111        111244


Q ss_pred             ccccccCCccEEEEeeee-ccCCCCccCCCCCCEEEeeeEEeChHHHHHHHh-cCCcccEEEeecCCC--CCc-------
Q 018106          163 QAIFSANSVTNLRLVWCR-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWG--LKH-------  231 (360)
Q Consensus       163 ~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~c~~--~~~-------  231 (360)
                      ..+..+++|+.|.+.++. +...  ....++|++|.|..+.++.+.+..+.. .+|+|+.|+|..+..  ...       
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~--~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIG--KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCC--SCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHHhcCCCCcEEEEeCCCCceec--cccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            445567999999998873 2211  134789999999988888888877653 689999999863211  011       


Q ss_pred             --cccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcc---eeeccCCCCccEEEeeccccCcHHHHHHh-
Q 018106          232 --LCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR---VVEVARSPHLKKLDLVSVYFADNEFNHLI-  305 (360)
Q Consensus       232 --~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-  305 (360)
                        +....+|+|+.|.+.+|.                      ..+..   ......+|+|++|+|+.+.+++.....+. 
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~----------------------i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~  301 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAE----------------------EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD  301 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCT----------------------THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT
T ss_pred             HHHhcCCCCCcCEEeCCCCC----------------------CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh
Confidence              011124555555555443                      11100   00112457777777777777665544443 


Q ss_pred             --cCCCCCCEEEecCcC
Q 018106          306 --SKFPSLEDLFVTRCC  320 (360)
Q Consensus       306 --~~~~~L~~L~L~~c~  320 (360)
                        ..+++|+.|+|+.|.
T Consensus       302 ~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          302 HVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             THHHHTTCSEEECCSBB
T ss_pred             hcccCCcceEEECCCCc
Confidence              346777788777763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.76  E-value=2.8e-08  Score=80.60  Aligned_cols=124  Identities=21%  Similarity=0.073  Sum_probs=83.6

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      +++++|+  +..+......+|..+..+++|+.|++.+|.+........+++|+.|.++++.+... +..++..+|+|+.|
T Consensus        24 ~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred             ccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence            5788888  65544433456666667899999999998876554556788999999999988542 44556678999999


Q ss_pred             EeecCCCCCc---cccccCCCccEEEecccc-chhhh----HhhcCCCccEEEEE
Q 018106          222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLL  268 (360)
Q Consensus       222 ~l~~c~~~~~---~~i~~l~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~  268 (360)
                      ++.+|.....   ..+..+++|+.|++.++. .....    ....+|+|++|++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence            9998864331   234456788888888775 11111    22245555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.75  E-value=4.2e-08  Score=92.83  Aligned_cols=31  Identities=32%  Similarity=0.342  Sum_probs=14.1

Q ss_pred             CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ++|+.|+++++.++.     +....++|++|++++|
T Consensus       257 ~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          257 PSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN  287 (454)
T ss_dssp             TTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred             cccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence            455555555444332     1112345555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.74  E-value=1.6e-08  Score=82.01  Aligned_cols=91  Identities=10%  Similarity=0.130  Sum_probs=71.8

Q ss_pred             ccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEE-eChHHHHHHHhc---CCcccEEEeecCCCCCcc
Q 018106          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE---CPLLEDLCFSNCWGLKHL  232 (360)
Q Consensus       159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~c~~~~~~  232 (360)
                      ..+|..-...-.|++|++++|.+.+.+  ....|++|++|+|++|. +++.++..+...   |++|++|+|++|..++.-
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            345543333567999999999977665  44689999999999996 699999987763   789999999999877653


Q ss_pred             ---ccccCCCccEEEecccc
Q 018106          233 ---CVSKASKLKIMEIRSFS  249 (360)
Q Consensus       233 ---~i~~l~~L~~L~l~~~~  249 (360)
                         .+..+++|++|++.+|.
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHhcCCCCCEEECCCCC
Confidence               33567999999999997

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.73  E-value=7.9e-08  Score=94.23  Aligned_cols=92  Identities=16%  Similarity=0.082  Sum_probs=49.8

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .++++|+  +..+...  .+|.   ..++|++|++++|.+...+  ..+++|++|.++++.++.  +   -...++|+.|
T Consensus        61 ~~L~~L~--L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp--~~l~~L~~L~Ls~N~l~~--l---~~~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLV--IPDNNLT--SLPA---LPPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLTH--L---PALPSGLCKL  126 (622)
T ss_dssp             TTCSEEE--ECSCCCS--CCCC---CCTTCCEEEECSCCCSCCC--CCCTTCCEEEECSCCCCC--C---CCCCTTCCEE
T ss_pred             CCCcEEE--ecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCC--CCCCCCCEEECcCCcCCC--C---CCCCCCcCEE
Confidence            4667766  4333221  2332   3467777777777655322  256677777777766531  1   1145667777


Q ss_pred             EeecCCCCCccccccCCCccEEEecccc
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS  249 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~  249 (360)
                      ++.+|. +..+.. .+++|+.|++++|.
T Consensus       127 ~L~~N~-l~~lp~-~l~~L~~L~Ls~N~  152 (622)
T 3g06_A          127 WIFGNQ-LTSLPV-LPPGLQELSVSDNQ  152 (622)
T ss_dssp             ECCSSC-CSCCCC-CCTTCCEEECCSSC
T ss_pred             ECCCCC-CCcCCC-CCCCCCEEECcCCc
Confidence            776654 222222 13667777776664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.71  E-value=3.6e-08  Score=95.83  Aligned_cols=170  Identities=18%  Similarity=0.115  Sum_probs=111.4

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEEeCh-HHHHHHHhcCCcc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDE-QMVQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~L  218 (360)
                      .++++++  +..........+   ..+++|++|++.++.+...  .....+++|+.|.++++.++. ..+...+..+++|
T Consensus       331 ~~L~~L~--l~~n~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L  405 (562)
T 3a79_B          331 MNIKMLS--ISDTPFIHMVCP---PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL  405 (562)
T ss_dssp             CCCSEEE--EESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC
T ss_pred             CcceEEE--ccCCCcccccCc---cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC
Confidence            5677777  543332222211   3568889999988887652  244678889999998888743 3444456788899


Q ss_pred             cEEEeecCCCCCccc---cccCCCccEEEeccccchhhhHhhcC-CCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106          219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVEISV-PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (360)
Q Consensus       219 e~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~~~~~~~~~~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (360)
                      ++|++.+|.....+.   ...+++|+.|+++++. -...+.... ++|+.|+++.+... ..+..+..+++|+.|+++++
T Consensus       406 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS
T ss_pred             CEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC
Confidence            999998876533222   3456889999998886 112222233 58889888855443 33334457888999999888


Q ss_pred             ccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          295 YFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      .++.- ....+..+++|++|++++|
T Consensus       484 ~l~~l-~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          484 QLKSV-PDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CCCCC-CTTSTTTCTTCCCEECCSC
T ss_pred             CCCCC-CHHHHhcCCCCCEEEecCC
Confidence            77641 1223667888889998887

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.71  E-value=2.7e-08  Score=78.99  Aligned_cols=123  Identities=21%  Similarity=0.136  Sum_probs=82.0

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .++++|+  +..+......+|..+..+++|+.|++.+|.+........+++|++|.++++.++.. +...+..+++|++|
T Consensus        17 ~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred             ccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence            4678888  65544332456666667889999999988876544556788899999998887542 44556778999999


Q ss_pred             EeecCCCCCc---cccccCCCccEEEecccc-chhhh----HhhcCCCccEEEE
Q 018106          222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTL  267 (360)
Q Consensus       222 ~l~~c~~~~~---~~i~~l~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l  267 (360)
                      ++.+|...+.   ..+..+++|+.|+++++. .....    ....+|+|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            9988864331   234567888888888775 11111    2234566666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.69  E-value=2.9e-08  Score=96.25  Aligned_cols=174  Identities=14%  Similarity=0.037  Sum_probs=91.5

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .+++.|+  +......  .+|..+  .++|++|++++|.+...+  ..+++|+.|.++++.++.  +.. +  +.+|+.|
T Consensus        59 ~~L~~L~--Ls~n~L~--~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L  125 (571)
T 3cvr_A           59 NQFSELQ--LNRLNLS--SLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-L--PASLKHL  125 (571)
T ss_dssp             TTCSEEE--CCSSCCS--CCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-C--CTTCCEE
T ss_pred             CCccEEE--eCCCCCC--ccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-h--hcCCCEE
Confidence            4677777  4333222  244433  266777777777665332  456777777777776632  222 2  1267777


Q ss_pred             EeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHH
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  301 (360)
                      ++.+|.. ..+.. .+++|+.|+++++.  +..+....++|+.|+++.+.... .+. +.  ++|+.|+++++.++.  +
T Consensus       126 ~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~--l  195 (571)
T 3cvr_A          126 DVDNNQL-TMLPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES--L  195 (571)
T ss_dssp             ECCSSCC-SCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS--C
T ss_pred             ECCCCcC-CCCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc--h
Confidence            7776643 22222 45677777777664  22222245667777777544332 222 22  677777777666542  1


Q ss_pred             HHHhcCCCCC-------CEEEecCc--CChhhhhhcCCccceEeccccc
Q 018106          302 NHLISKFPSL-------EDLFVTRC--CLPGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       302 ~~~~~~~~~L-------~~L~L~~c--~~~~~i~~~~~~L~~L~l~~c~  341 (360)
                      .. +.  ++|       ++|+|++|  ..+.......++|+.|+++++.
T Consensus       196 p~-~~--~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          196 PA-VP--VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             hh-HH--HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence            11 11  144       77777766  1122212236667777776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.66  E-value=7.5e-09  Score=87.12  Aligned_cols=144  Identities=14%  Similarity=0.083  Sum_probs=97.8

Q ss_pred             CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc-chhhh-HhhcCCCccE
Q 018106          189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQ  264 (360)
Q Consensus       189 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~  264 (360)
                      ..++|++|.++++.++.-. ...+..+++|++|++.++......  .+..+++|++|+++++. ..+.. ....+++|++
T Consensus        26 ~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           26 IPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence            3568999999999874222 223578999999999988543211  13467899999999886 22221 1236789999


Q ss_pred             EEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhhcCCccceEecc
Q 018106          265 LTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFR  338 (360)
Q Consensus       265 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~~~~~L~~L~l~  338 (360)
                      |+++.+.........+..+++|+.|++.++.++.. ....+..+++|++|++.+|+..    ..+++|+.|++.
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~~  173 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEW  173 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHHH
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCee----cCCCCHHHHHHH
Confidence            99986555433333467889999999998877642 2334677899999999987322    234455555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.64  E-value=7.2e-09  Score=95.39  Aligned_cols=108  Identities=15%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             HHHcCceEEEeecccCCCccc---cCcccccc-cCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHH
Q 018106          139 AVENGVRELDFENITDENTVY---TLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKL  211 (360)
Q Consensus       139 ~~~~~l~~L~~~l~~~~~~~~---~l~~~l~~-~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l  211 (360)
                      .+...+++++  +..+.....   .+...+.. +++|++|+|++|.+.+.+   ....+++|++|+|+++.+++.+...+
T Consensus        69 ~~~~~L~~L~--Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           69 EVLSSLRQLN--LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             HHHTTCCEEE--CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             HHHhhCCEEE--ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            3446777777  544332221   11112222 357777777777664332   22345667777777777766555443


Q ss_pred             H----hcCCcccEEEeecCCCCCcc---c----cccCCCccEEEecccc
Q 018106          212 A----SECPLLEDLCFSNCWGLKHL---C----VSKASKLKIMEIRSFS  249 (360)
Q Consensus       212 ~----~~cp~Le~L~l~~c~~~~~~---~----i~~l~~L~~L~l~~~~  249 (360)
                      .    ..++.|++|+|.+|.. +..   .    +...++|++|++++|.
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCC-HHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred             HHHHHhcCCccceeeCCCCCC-ChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence            2    2456777777777643 210   1    1234566666666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.62  E-value=1.7e-07  Score=91.90  Aligned_cols=115  Identities=15%  Similarity=-0.031  Sum_probs=64.6

Q ss_pred             cCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106          214 ECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (360)
Q Consensus       214 ~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (360)
                      .+++|+.|++.+|.. ..+.. ..++|+.|.+.++.  +..+....++|+.|+++.+.... .+   ..+++|+.|++++
T Consensus       179 ~~~~L~~L~Ls~N~l-~~l~~-~~~~L~~L~L~~N~--l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~  250 (622)
T 3g06_A          179 LPSGLQELSVSDNQL-ASLPT-LPSELYKLWAYNNR--LTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG  250 (622)
T ss_dssp             CCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSSC--CSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred             cCCCCcEEECCCCCC-CCCCC-ccchhhEEECcCCc--ccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence            346666666665542 22211 13566666666654  22232334677777777443322 11   4567788888877


Q ss_pred             cccCcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEeccccc
Q 018106          294 VYFADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c~  341 (360)
                      +.++.     +...+++|++|+|++|.  .+......+++|+.|++.++.
T Consensus       251 N~L~~-----lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          251 NRLTS-----LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             SCCSC-----CCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCCc-----CCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence            76653     11256778888888772  222223456778888887664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.59  E-value=9.8e-08  Score=81.63  Aligned_cols=125  Identities=16%  Similarity=0.027  Sum_probs=64.9

Q ss_pred             CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccEE
Q 018106          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIM  243 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~L  243 (360)
                      ++|+.|++.++.+....  ....+++|+.|.|+++.++.-. ...+..+++|+.|++.++.. ..+.   +..+++|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcC-CccChhHhCcchhhCeE
Confidence            66777777776655332  2345666777777666652111 11235566666666666542 2111   2234555555


Q ss_pred             EeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       244 ~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +++++.                      .. ..+..+..+++|+.|+++++.++.-. ...+..+++|++|++.+|
T Consensus       118 ~Ls~N~----------------------l~-~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          118 FMCCNK----------------------LT-ELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             ECCSSC----------------------CC-SCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTS
T ss_pred             eccCCc----------------------cc-ccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCC
Confidence            555543                      21 11223345566666666666554321 123455666666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.58  E-value=3.4e-08  Score=84.02  Aligned_cols=80  Identities=13%  Similarity=0.009  Sum_probs=40.5

Q ss_pred             CCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEE
Q 018106          169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIM  243 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L  243 (360)
                      +.++.|++.++.+....   ....+++|++|.++++.++.-.- ..+..+++|++|++.++......  .+..+++|+.|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            34566666666554221   23456666666666665532111 12445666666666665432211  13344566666


Q ss_pred             Eecccc
Q 018106          244 EIRSFS  249 (360)
Q Consensus       244 ~l~~~~  249 (360)
                      +++++.
T Consensus       111 ~Ls~N~  116 (220)
T 2v70_A          111 MLRSNR  116 (220)
T ss_dssp             ECTTSC
T ss_pred             ECCCCc
Confidence            665553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.57  E-value=3.9e-07  Score=86.16  Aligned_cols=157  Identities=13%  Similarity=0.078  Sum_probs=93.3

Q ss_pred             CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccc
Q 018106          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~  248 (360)
                      ++|++|++.++.+...+  ...++|++|.++++.++.  +.. +..+++|++|++.+|.. ..+.. ..++|+.|++.++
T Consensus       111 ~~L~~L~l~~n~l~~l~--~~~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l-~~lp~-~~~~L~~L~L~~n  183 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALS--DLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSL-KKLPD-LPPSLEFIAAGNN  183 (454)
T ss_dssp             TTCCEEECCSSCCSCCC--SCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSS
T ss_pred             CCCcEEECCCCccCccc--CCCCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcC-cccCC-CcccccEEECcCC
Confidence            67777777777655321  112578888887776642  222 56777888888877643 22221 1257888888777


Q ss_pred             c-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh
Q 018106          249 S-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI  327 (360)
Q Consensus       249 ~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~  327 (360)
                      . ..+.. ...+++|+.|++..+.... .+   ...++|+.|+++++.++.  +.. +..+++|++|++++|. +..+..
T Consensus       184 ~l~~l~~-~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~l~~  254 (454)
T 1jl5_A          184 QLEELPE-LQNLPFLTAIYADNNSLKK-LP---DLPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNL-LKTLPD  254 (454)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSS-CC---CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSSCCS
T ss_pred             cCCcCcc-ccCCCCCCEEECCCCcCCc-CC---CCcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCc-CCcccc
Confidence            5 22221 2356778888877444322 11   123578888888777652  222 5678889999998872 222323


Q ss_pred             cCCccceEeccccc
Q 018106          328 SSNQLKNLLFRSCK  341 (360)
Q Consensus       328 ~~~~L~~L~l~~c~  341 (360)
                      ..++|+.|+++++.
T Consensus       255 ~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          255 LPPSLEALNVRDNY  268 (454)
T ss_dssp             CCTTCCEEECCSSC
T ss_pred             cccccCEEECCCCc
Confidence            34677777776653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.52  E-value=6.9e-08  Score=78.95  Aligned_cols=131  Identities=15%  Similarity=0.024  Sum_probs=63.4

Q ss_pred             ccCCccEEEEeeeeccCCCCccC-CCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEe
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIM-LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l  245 (360)
                      .+++|+.|++.+|.+........ +++|+.|.++++.++.-   ..+..+++|+.|++.+|.. ..+.            
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~------------   80 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIG------------   80 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEEC------------
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccC------------
Confidence            35666666666665543221222 23556666655554321   1234445555555554432 1111            


Q ss_pred             ccccchhhhHhhcCCCccEEEEEeecCCCcc-eeeccCCCCccEEEeeccccCcH--HHHHHhcCCCCCCEEEecCcC
Q 018106          246 RSFSEEIEIVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFVTRCC  320 (360)
Q Consensus       246 ~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~c~  320 (360)
                             ..+...+|+|++|+++.+...... ...+..+++|+.|++.++.++..  .....+..+|+|++|++..+.
T Consensus        81 -------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           81 -------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             -------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             -------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence                   011123445555555433321111 11345677777777777665431  112245667888888877763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=2.9e-08  Score=82.93  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             cCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEE
Q 018106          188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTL  267 (360)
Q Consensus       188 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l  267 (360)
                      ..+++|++|.++++.++.  +. .+..+++|+.|++.+|... .                    +......+|+|+.|++
T Consensus        45 ~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~--------------------l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-K--------------------IENLDAVADTLEELWI  100 (198)
T ss_dssp             HHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-S--------------------CSSHHHHHHHCSEEEE
T ss_pred             hcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-c--------------------ccchhhcCCcCCEEEC
Confidence            346667777777766633  11 2455666677666665321 1                    1111122345555555


Q ss_pred             EeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhh-------------hhhcCCccce
Q 018106          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK-------------IKISSNQLKN  334 (360)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~-------------i~~~~~~L~~  334 (360)
                      +.+.... .+ .+..+++|+.|++.++.+++-.....+..+++|++|++++|.....             +...+++|+.
T Consensus       101 ~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          101 SYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             cCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence            5443322 11 3455677777777777766533323466777788888777632111             2345677777


Q ss_pred             Ee
Q 018106          335 LL  336 (360)
Q Consensus       335 L~  336 (360)
                      |+
T Consensus       179 Ld  180 (198)
T 1ds9_A          179 LD  180 (198)
T ss_dssp             EC
T ss_pred             EC
Confidence            76

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.50  E-value=1.5e-07  Score=80.00  Aligned_cols=79  Identities=13%  Similarity=0.057  Sum_probs=44.4

Q ss_pred             CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccEE
Q 018106          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIM  243 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~L  243 (360)
                      ++|+.|++.++.+....  ....+++|+.|.|+++.++.-.. ..+.++++|++|+|.++.. ..+.   ...+++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEE
Confidence            56777777776654221  34456777777777776532111 1245567777777776643 2211   2345666666


Q ss_pred             Eecccc
Q 018106          244 EIRSFS  249 (360)
Q Consensus       244 ~l~~~~  249 (360)
                      +++++.
T Consensus       110 ~L~~N~  115 (220)
T 2v9t_B          110 LLNANK  115 (220)
T ss_dssp             ECCSSC
T ss_pred             ECCCCC
Confidence            666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.50  E-value=6.2e-08  Score=79.23  Aligned_cols=134  Identities=16%  Similarity=0.056  Sum_probs=79.6

Q ss_pred             cCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEE
Q 018106          188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTL  267 (360)
Q Consensus       188 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l  267 (360)
                      ..+++|+.|.++++.++.  +..+...+|+|+.|++.+|...+.-.+..++                      +|+.|++
T Consensus        16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~----------------------~L~~L~L   71 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLR----------------------RLKTLLV   71 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCS----------------------SCCEEEC
T ss_pred             CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCC----------------------CCCEEEC
Confidence            445667777777766531  1223333446777777666422211222334                      4555555


Q ss_pred             EeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--hhh----hhhcCCccceEeccccc
Q 018106          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--PGK----IKISSNQLKNLLFRSCK  341 (360)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~----i~~~~~~L~~L~l~~c~  341 (360)
                      +.+.........+..+++|+.|+++++.++.-.....+..+++|++|++++|..  ...    +...+++|+.|++.++.
T Consensus        72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            433222111112367899999999999886532222467899999999999832  122    35678999999998776


Q ss_pred             cccc
Q 018106          342 YLKS  345 (360)
Q Consensus       342 ~l~~  345 (360)
                      .-..
T Consensus       152 ~~~~  155 (176)
T 1a9n_A          152 LKER  155 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.49  E-value=1.8e-08  Score=84.21  Aligned_cols=135  Identities=16%  Similarity=0.150  Sum_probs=82.6

Q ss_pred             cccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccC
Q 018106          158 VYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKA  237 (360)
Q Consensus       158 ~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l  237 (360)
                      ...+|..+..+++|++|++.+|.+........+++|+.|.++++.++  .+...+..+|+|+.|++.+|.....-.+..+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l  114 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence            34455566678889999998888765444556788999999988875  2333455668888888888753221122334


Q ss_pred             CCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCc-ceeeccCCCCccEEEeeccccCcH---------HHHHHhcC
Q 018106          238 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVYFADN---------EFNHLISK  307 (360)
Q Consensus       238 ~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~~  307 (360)
                      ++|+.|++.++.                      .... ....+..+++|+.|++.++.+...         .....+..
T Consensus       115 ~~L~~L~l~~N~----------------------i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A          115 VNLRVLYMSNNK----------------------ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             HHSSEEEESEEE----------------------CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCCCEEECCCCc----------------------CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            556666555543                      1110 001245567777777766655332         22344667


Q ss_pred             CCCCCEEEe
Q 018106          308 FPSLEDLFV  316 (360)
Q Consensus       308 ~~~L~~L~L  316 (360)
                      +|+|++|+-
T Consensus       173 l~~L~~Ld~  181 (198)
T 1ds9_A          173 LPNLKKLDG  181 (198)
T ss_dssp             CSSCSEECC
T ss_pred             CCCcEEECC
Confidence            888888873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.49  E-value=1.1e-07  Score=87.53  Aligned_cols=153  Identities=16%  Similarity=0.104  Sum_probs=107.1

Q ss_pred             cCCccEEEEeeeeccCCC-------CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--ccc----
Q 018106          168 ANSVTNLRLVWCRLEQPF-------DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCV----  234 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~-------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i----  234 (360)
                      .++|+.|++.+|.+....       .....++|++|+|+++.+++..+..+...+++|++|+|.+|.....  ..+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            468999999998876432       1113468999999999998888888888888999999999854221  111    


Q ss_pred             -ccCCCccEEEecccc---chhhhH---hhcCCCccEEEEEeecCCCcc----eeeccCCCCccEEEeeccccCcHHHHH
Q 018106          235 -SKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGARRPR----VVEVARSPHLKKLDLVSVYFADNEFNH  303 (360)
Q Consensus       235 -~~l~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~  303 (360)
                       ...++|+.|++++|.   .....+   ....++|++|+++.+...+..    ...+...++|+.|+|+++.+++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             124789999999887   112222   135788999999865543221    223456778999999988888754443


Q ss_pred             ---HhcCCCCCCEEEecCcC
Q 018106          304 ---LISKFPSLEDLFVTRCC  320 (360)
Q Consensus       304 ---~~~~~~~L~~L~L~~c~  320 (360)
                         .+...++|++|+|++|.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHhCCCCCEEeccCCC
Confidence               34567889999999884

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.47  E-value=1.2e-07  Score=80.67  Aligned_cols=145  Identities=14%  Similarity=0.008  Sum_probs=98.8

Q ss_pred             cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc
Q 018106          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS  249 (360)
Q Consensus       172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~  249 (360)
                      +.++..++.+...+ ..-.++|+.|.++++.++.-.. ..+..+++|+.|++.++.....  -.+.++++|+.|+++++.
T Consensus        14 ~~v~c~~~~l~~iP-~~l~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIP-TNLPETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCC-SSCCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCC-CccCcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            34555554443322 1123689999999998742221 1357789999999999864221  234567999999999886


Q ss_pred             -chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          250 -EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       250 -~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                       ..+.. ....+++|+.|+++.+.........+..+++|+.|+++++.++.-. ...+..+++|++|+|.+|
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCC
Confidence             22221 1236789999999966554444445778899999999998876532 234667899999999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.46  E-value=1.2e-07  Score=93.15  Aligned_cols=150  Identities=15%  Similarity=0.018  Sum_probs=80.8

Q ss_pred             cCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCC--ccccccCCCccEEEeccccchhh----hHhhcCCC
Q 018106          188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIE----IVEISVPS  261 (360)
Q Consensus       188 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~~~~~----~~~~~~p~  261 (360)
                      ..+++|+.+.+..+......-...+..+++++.+++..+....  ......+++|+.|.+.++. ...    .....+++
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~-~~~~~~~~~~~~l~~  495 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRN  495 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTT
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc-cccccCchhhhhccc
Confidence            3456666666655544111111224455666666666553311  1112335677777777664 111    11235677


Q ss_pred             ccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcC-CccceEec
Q 018106          262 LQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISS-NQLKNLLF  337 (360)
Q Consensus       262 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~-~~L~~L~l  337 (360)
                      |++|+++.+......+..+.++++|+.|+|+++.++.-. ...+..+++|++|+|++|...   ....... ++|+.|++
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            788877755443333344667778888888777665421 223566778888888776221   1112222 46777877


Q ss_pred             cc
Q 018106          338 RS  339 (360)
Q Consensus       338 ~~  339 (360)
                      ++
T Consensus       575 ~~  576 (635)
T 4g8a_A          575 TQ  576 (635)
T ss_dssp             TT
T ss_pred             eC
Confidence            64

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=2.5e-07  Score=75.01  Aligned_cols=87  Identities=13%  Similarity=0.044  Sum_probs=52.8

Q ss_pred             CccEEEEEeecCCCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcC---CCCCCEEEecCcCChhhh----hhcCCcc
Q 018106          261 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISK---FPSLEDLFVTRCCLPGKI----KISSNQL  332 (360)
Q Consensus       261 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~L~~c~~~~~i----~~~~~~L  332 (360)
                      +|++|+++++...+.....+..+++|++|+|+++. ++|..+..+...   +++|++|+|++|..+.+.    ...+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555444333333345667777777777664 677766665542   456777777777543321    2356777


Q ss_pred             ceEeccccccccccc
Q 018106          333 KNLLFRSCKYLKSAL  347 (360)
Q Consensus       333 ~~L~l~~c~~l~~~~  347 (360)
                      +.|++++|+.+++.+
T Consensus       142 ~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          142 KYLFLSDLPGVKEKE  156 (176)
T ss_dssp             CEEEEESCTTCCCHH
T ss_pred             CEEECCCCCCCCchH
Confidence            777777777777643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.40  E-value=2.2e-07  Score=85.11  Aligned_cols=148  Identities=20%  Similarity=0.120  Sum_probs=93.1

Q ss_pred             CCccEEEEeeeeccCCC--Ccc-CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc---ccccCCCccE
Q 018106          169 NSVTNLRLVWCRLEQPF--DSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKI  242 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~--~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~l~~L~~  242 (360)
                      +.++.|+|+++.+....  ... .+++|+.|.|+++.++.-.. ..+..+++|+.|+|.++.. ..+   .+..+++|+.
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence            45788888888765332  223 77888888888887642221 1256788889998888753 322   2345688888


Q ss_pred             EEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeec---cCCCCccEEEeeccccCcHHHHHHhcCCCC--CCEEE
Q 018106          243 MEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEV---ARSPHLKKLDLVSVYFADNEFNHLISKFPS--LEDLF  315 (360)
Q Consensus       243 L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~  315 (360)
                      |+++++. ..+ ......+++|+.|+++.+....-....+   ..+++|+.|+|+++.++.-. ...+..++.  |+.|+
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~  195 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLY  195 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEE
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEE
Confidence            8888776 111 1122357888888888554432111122   56889999999888876532 223445665  47888


Q ss_pred             ecCc
Q 018106          316 VTRC  319 (360)
Q Consensus       316 L~~c  319 (360)
                      |.+|
T Consensus       196 l~~N  199 (361)
T 2xot_A          196 LHNN  199 (361)
T ss_dssp             CCSS
T ss_pred             ecCC
Confidence            8886

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.40  E-value=1.4e-07  Score=85.99  Aligned_cols=201  Identities=14%  Similarity=0.037  Sum_probs=105.6

Q ss_pred             cCceEEEeecccCCCccccCcccc-cccCCccEEEEeeeeccC---CCCccCCCCCCEEEe-eeEEeChHHHHHHHhcCC
Q 018106          142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQ---PFDSIMLCSLKKLTL-ERVCLDEQMVQKLASECP  216 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp  216 (360)
                      .++++|+  +.....  ..++... ..+++|++|+|++|.+..   ......+++|+++.. .++.+..-. ...+..++
T Consensus        30 ~~l~~L~--Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELR--FVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP  104 (350)
T ss_dssp             TTCSEEE--EESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCT
T ss_pred             CCCCEEE--ccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcc
Confidence            4788888  543322  2445433 347889999998887532   113345666665443 333332111 12356788


Q ss_pred             cccEEEeecCCCCCcc--ccccCCCccEEEeccccchhhhHh----hc-CCCccEEEEEeecCCCcceeeccCCCCccEE
Q 018106          217 LLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVE----IS-VPSLQQLTLLFYGARRPRVVEVARSPHLKKL  289 (360)
Q Consensus       217 ~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~~~~~~~~----~~-~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (360)
                      +|+.|++.++......  ......++..|.+.++. .+..+.    .. ...++.|.++.+.... .........+|+.|
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l  182 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDEL  182 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEE
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccC-CChhhccccchhHH
Confidence            8999998887542211  11223466677776554 222221    11 2356777777443321 11122234567777


Q ss_pred             Eeecc-ccCcHHHHHHhcCCCCCCEEEecCcCChhhhh-hcCCccceEecccccccccccccce
Q 018106          290 DLVSV-YFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKSALCVKV  351 (360)
Q Consensus       290 ~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~-~~~~~L~~L~l~~c~~l~~~~~~~~  351 (360)
                      .+.++ .++. .....+..+++|++|+|++| .+..+. ....+|++|.+.++.+++.+..+.-
T Consensus       183 ~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~  244 (350)
T 4ay9_X          183 NLSDNNNLEE-LPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEK  244 (350)
T ss_dssp             ECTTCTTCCC-CCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred             hhccCCcccC-CCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchh
Confidence            77543 3322 12234566778888888876 223332 2345677777766666655544433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.40  E-value=2.9e-07  Score=78.15  Aligned_cols=146  Identities=15%  Similarity=0.029  Sum_probs=91.2

Q ss_pred             cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc
Q 018106          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS  249 (360)
Q Consensus       172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~  249 (360)
                      +.+++.++.+...+ ..-.+.++.|.++++.++.-.....+..+++|+.|++.++.....  -.+..+++|+.|+++++.
T Consensus        14 ~~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIP-EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCc-cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            45666665554322 122346788888888764322222356788888888887753221  124556888888888775


Q ss_pred             -chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          250 -EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       250 -~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                       ..+. .....+++|++|+++.+.........+..+++|+.|+++++.++.-. ...+..+++|++|+|++|
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCc
Confidence             2221 12236788888888855554433445667888888888887765531 233567788888888877

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.39  E-value=2.4e-07  Score=84.88  Aligned_cols=164  Identities=16%  Similarity=0.076  Sum_probs=106.8

Q ss_pred             cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHh-cCCcccEEEeecCCCCCcc---ccccCCCccEEEecc
Q 018106          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRS  247 (360)
Q Consensus       172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~c~~~~~~---~i~~l~~L~~L~l~~  247 (360)
                      +.+++.++.+...+ ..-.+.++.|.|+++.++.-... .+. .+++|+.|+|.++.. ..+   .+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVP-QSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCC-SSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccC-ccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCC
Confidence            46666666554322 12235699999999987432222 233 789999999998864 332   245679999999998


Q ss_pred             cc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHh---cCCCCCCEEEecCcCC-
Q 018106          248 FS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRCCL-  321 (360)
Q Consensus       248 ~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~L~~c~~-  321 (360)
                      +. ..+.. ....+++|+.|+++.+.........+..+++|+.|+|+++.++.-. ...+   ..+++|++|+|++|.. 
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCC
Confidence            86 22211 2236789999999966554333345778999999999998876521 1222   5689999999999822 


Q ss_pred             --hhhhhhcCCc--cceEeccc
Q 018106          322 --PGKIKISSNQ--LKNLLFRS  339 (360)
Q Consensus       322 --~~~i~~~~~~--L~~L~l~~  339 (360)
                        ........+.  ++.|++.+
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCS
T ss_pred             ccCHHHhhhccHhhcceEEecC
Confidence              1122233444  47788765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.36  E-value=7.3e-07  Score=76.15  Aligned_cols=143  Identities=13%  Similarity=0.052  Sum_probs=87.8

Q ss_pred             cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccEEEeccc
Q 018106          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF  248 (360)
Q Consensus       172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~  248 (360)
                      +.++..+..+...+ ..-.++|++|.|+++.++.-.. ..+..+++|++|++.++.. ..+.   +..+++|+.|+++++
T Consensus        22 ~~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVP-AGIPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCC-SCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccC-CCCCCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence            44555444443222 1223788888888887743211 2256678888888887753 2221   233455666665554


Q ss_pred             cchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC---hhhh
Q 018106          249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL---PGKI  325 (360)
Q Consensus       249 ~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i  325 (360)
                      .                      ........+..+++|+.|+++++.++.  +...+..+++|++|+|++|..   ....
T Consensus        99 ~----------------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           99 Q----------------------LTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             C----------------------CCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred             c----------------------CCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHH
Confidence            3                      211112234678999999999888763  233357889999999999822   2233


Q ss_pred             hhcCCccceEeccccc
Q 018106          326 KISSNQLKNLLFRSCK  341 (360)
Q Consensus       326 ~~~~~~L~~L~l~~c~  341 (360)
                      ....++|+.|++.+..
T Consensus       155 ~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTCTTCCEEECTTSC
T ss_pred             HhCCCCCCEEEeeCCC
Confidence            4567899999998654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.35  E-value=3.6e-07  Score=89.66  Aligned_cols=159  Identities=17%  Similarity=0.116  Sum_probs=102.1

Q ss_pred             ccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc-
Q 018106          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-  233 (360)
Q Consensus       157 ~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-  233 (360)
                      .-..+|..+  -+++++|+|+++.+....  ....+++|++|+|+++.++.-. ...+.++++|++|+|.+|. +..+. 
T Consensus        42 ~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~  117 (635)
T 4g8a_A           42 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL  117 (635)
T ss_dssp             CCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECG
T ss_pred             CcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCH
Confidence            344555433  257899999998875322  4567899999999998763211 1235678999999999885 33332 


Q ss_pred             --cccCCCccEEEecccc-chhhhH-hhcCCCccEEEEEeecCCC-cceeeccCCCCccEEEeeccccCc---HHHHHHh
Q 018106          234 --VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFAD---NEFNHLI  305 (360)
Q Consensus       234 --i~~l~~L~~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~  305 (360)
                        +.++++|++|++.++. ..+... .-.+++|++|+++.+.... ..+..+..+++|++|+++++.++.   ..+..+-
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence              3567899999999886 222222 2357888999888554422 233456778889999998877644   2333322


Q ss_pred             cCCCCCCEEEecCc
Q 018106          306 SKFPSLEDLFVTRC  319 (360)
Q Consensus       306 ~~~~~L~~L~L~~c  319 (360)
                      .....+..+++..+
T Consensus       198 ~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          198 QMPLLNLSLDLSLN  211 (635)
T ss_dssp             TCTTCCCEEECTTC
T ss_pred             hhhhhhhhhhcccC
Confidence            22234456666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.29  E-value=7.1e-07  Score=86.48  Aligned_cols=159  Identities=16%  Similarity=0.086  Sum_probs=108.6

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .+++.|+  +..+...  .+|   ..+++|+.|++.+|.+...+.  -..+|++|.++++.++.  +..   .+++|+.|
T Consensus        80 ~~L~~L~--Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L  145 (571)
T 3cvr_A           80 PQITVLE--ITQNALI--SLP---ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYI  145 (571)
T ss_dssp             TTCSEEE--CCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred             CCCCEEE--CcCCCCc--ccc---cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEE
Confidence            5799999  6544333  444   336899999999998765322  22399999999998743  222   68999999


Q ss_pred             EeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCc-------cEEEeec
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL-------KKLDLVS  293 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~  293 (360)
                      ++.+|.. ..+.. .+++|+.|+++++. ..+..  +. ++|+.|+++.+... ..+. +..  +|       +.|++++
T Consensus       146 ~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          146 NADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             ECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred             eCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence            9998864 33333 45899999999886 22222  22 89999999966553 2222 322  66       9999999


Q ss_pred             cccCcHHHHHHhcCCCCCCEEEecCcCChhhh
Q 018106          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKI  325 (360)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i  325 (360)
                      +.++.  +...+..+++|++|+|++|.....+
T Consensus       217 N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          217 NRITH--IPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             SCCCC--CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             Cccee--cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            88764  2333445899999999998554433

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.14  E-value=9.3e-07  Score=77.46  Aligned_cols=37  Identities=22%  Similarity=0.527  Sum_probs=34.6

Q ss_pred             ccccCCchHHHHHHhcCCChhhhh-hhcccccchhhhh
Q 018106           18 DRISELPTFIIHHLMSYLSAKEVA-RTSVLSKKWNQLY   54 (360)
Q Consensus        18 d~i~~LPd~iL~~I~s~L~~~~~~-~~~~vskrW~~l~   54 (360)
                      ..+..||+|+|.+||++||.++++ ++++|||+|+.+.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            578899999999999999999999 9999999999764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.11  E-value=2.1e-06  Score=83.34  Aligned_cols=101  Identities=18%  Similarity=0.152  Sum_probs=58.5

Q ss_pred             CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEeccccchhhhHhhcCCCccEEEEE
Q 018106          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL  268 (360)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~  268 (360)
                      ..|+.|.++++.++.  +.. +..+++|+.|++.+|... .+  .+..+++|+.|+++++.  +.               
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~--l~---------------  499 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA--LE---------------  499 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC--CC---------------
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC--CC---------------
Confidence            358889998887743  233 677889999999887532 22  23456677777776664  11               


Q ss_pred             eecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          269 FYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                           . .+ .+..+++|+.|+++++.++.......+..+++|++|+|++|
T Consensus       500 -----~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          500 -----N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             -----C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             -----C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence                 0 11 23455555555555555443211223445566666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.10  E-value=6.9e-06  Score=79.73  Aligned_cols=170  Identities=12%  Similarity=0.052  Sum_probs=111.5

Q ss_pred             cccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEe------------ChHHHHHHHhcCCcccEEE-eecCCCCCc
Q 018106          166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL------------DEQMVQKLASECPLLEDLC-FSNCWGLKH  231 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~------------~~~~l~~l~~~cp~Le~L~-l~~c~~~~~  231 (360)
                      ..+++|+.|+|+++.+..-+ ....|++|+.|.++++..            ........+..+++|+.|+ +..+ .+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence            34667777777776654221 334566777777654420            1122334567788888888 3332 1111


Q ss_pred             c--------cccc--CCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106          232 L--------CVSK--ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (360)
Q Consensus       232 ~--------~i~~--l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (360)
                      +        .+..  ...|+.|+++++. ..+.. .-.+++|+.|+++.+... ..+..+..+++|+.|+++++.++.  
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--  500 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--
Confidence            1        1111  1478999999886 33333 346789999999966554 455578899999999999998876  


Q ss_pred             HHHHhcCCCCCCEEEecCcC--Ch--hhhhhcCCccceEeccccc
Q 018106          301 FNHLISKFPSLEDLFVTRCC--LP--GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       301 ~~~~~~~~~~L~~L~L~~c~--~~--~~i~~~~~~L~~L~l~~c~  341 (360)
                      +. .+..+++|++|+|++|.  ..  ......+++|+.|+++++.
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            33 57789999999999982  22  3344578899999998765

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.09  E-value=7.1e-07  Score=77.38  Aligned_cols=33  Identities=21%  Similarity=0.513  Sum_probs=31.8

Q ss_pred             ccCCchHHHHHHhcCCChhhhhhhcccccchhh
Q 018106           20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQ   52 (360)
Q Consensus        20 i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~   52 (360)
                      |+.||+||+.+||+||+.+|++++++|||+||.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999995

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.02  E-value=2.8e-06  Score=70.30  Aligned_cols=38  Identities=21%  Similarity=0.092  Sum_probs=18.3

Q ss_pred             CCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106          260 PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (360)
Q Consensus       260 p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (360)
                      ++|++|+++.+......+..+..+++|+.|++.++.+.
T Consensus       102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            44444444433222222223455667777777666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.96  E-value=8.6e-06  Score=66.28  Aligned_cols=56  Identities=23%  Similarity=0.193  Sum_probs=25.4

Q ss_pred             CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccEEEeccc
Q 018106          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF  248 (360)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~  248 (360)
                      ++|++|.++++.++.-. ...+..+++|++|++.++.. ..+.   +..+++|+.|+++++
T Consensus        28 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           28 SSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCC
Confidence            45566666555542111 11234556666666665532 1111   223445555555544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.95  E-value=1.9e-06  Score=81.04  Aligned_cols=39  Identities=26%  Similarity=0.497  Sum_probs=36.6

Q ss_pred             ccccccCCchHHHHHHhcCCChhhhhhhcccccchhhhh
Q 018106           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   54 (360)
Q Consensus        16 ~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~   54 (360)
                      .+|.|+.||+|++.+||+||+.++++++++|||+|+++.
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999998754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.89  E-value=1.5e-05  Score=66.01  Aligned_cols=103  Identities=17%  Similarity=-0.017  Sum_probs=47.3

Q ss_pred             CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc-chhhh-HhhcCCCccEEE
Q 018106          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLT  266 (360)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~  266 (360)
                      ++|++|.++++.++.  +...+..+++|+.|++.++.....  -.+.++++|+.|+++++. ..+.. ....+++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            456666666665531  112345666677777666543211  113345566666666554 11110 011334455555


Q ss_pred             EEeecCCCcceeeccCCCCccEEEeeccc
Q 018106          267 LLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (360)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (360)
                      +..+.........+..+++|+.|++.++.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            44332221111123445566666665544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.89  E-value=2.4e-05  Score=63.59  Aligned_cols=124  Identities=12%  Similarity=0.013  Sum_probs=78.9

Q ss_pred             CCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc-chhhh-HhhcCCCccEEEE
Q 018106          192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTL  267 (360)
Q Consensus       192 ~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l  267 (360)
                      ..+.+.+.++.+..-.    ....+.|+.|++.++.....  ..+..+++|++|++.++. ..+.. ....+++|+.|++
T Consensus         8 ~~~~l~~~~~~l~~~p----~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVP----TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             ETTEEECCSSCCSSCC----TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEecCCCCccCC----CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            3566777666542111    12347899999998764221  123457899999998876 22211 1236788899998


Q ss_pred             EeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC
Q 018106          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (360)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~  320 (360)
                      +.+.........+..+++|+.|+++++.++.- ....+..+++|++|++++|+
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence            86555433333356788999999988877642 23345678889999998873

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.86  E-value=5.4e-06  Score=82.93  Aligned_cols=108  Identities=11%  Similarity=0.006  Sum_probs=55.1

Q ss_pred             ccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc-chhhhHhhcCCCcc
Q 018106          187 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQ  263 (360)
Q Consensus       187 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~  263 (360)
                      ...+++|+.|.|+++.+..  +..-+..+++|++|+|.+|... .+  .+..+++|+.|+++++. ..+......+++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            3455667777776666531  1111235667777777666432 22  13345667777766664 11111112455666


Q ss_pred             EEEEEeecCCCcceeeccCCCCccEEEeeccccCc
Q 018106          264 QLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  298 (360)
Q Consensus       264 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  298 (360)
                      +|.++.+... ..+..+..+++|+.|+|+++.++.
T Consensus       297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence            6666644332 233335566666666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.85  E-value=3.8e-05  Score=63.53  Aligned_cols=120  Identities=12%  Similarity=0.040  Sum_probs=78.1

Q ss_pred             CEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEe
Q 018106          194 KKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLF  269 (360)
Q Consensus       194 ~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~  269 (360)
                      +.+.++++.++.  +..  .-.+.|++|++.++.. ..+  .+..+++|+.|+++++. ..+. .....+++|++|+++.
T Consensus        13 ~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKV--LPK--GIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSS--CCS--CCCTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCc--CCC--CCCCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            556666655421  110  1246899999998754 322  34567899999998876 2222 1123678899999986


Q ss_pred             ecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          270 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +.........+..+++|+.|++.++.++.- ....+..+++|++|++.++
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSS
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCC
Confidence            555443334567888999999988877642 2234567888999999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.85  E-value=3.8e-05  Score=63.07  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=24.9

Q ss_pred             ccCCCCccEEEe--eccccCcHH---HHHHhcCCCCCCEEEecCc
Q 018106          280 VARSPHLKKLDL--VSVYFADNE---FNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       280 ~~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~L~~c  319 (360)
                      +...++|++|+|  .++.+++..   +.+.+...+.|++|+|++|
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            344566777777  666666644   3344455567777777766

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.83  E-value=2.2e-05  Score=64.92  Aligned_cols=124  Identities=15%  Similarity=0.010  Sum_probs=75.9

Q ss_pred             cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc
Q 018106          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS  249 (360)
Q Consensus       172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~  249 (360)
                      +.+++.++.+...+ ..-.++|++|.++++.++.-.....+..+++|++|++.++.....  -.+..+++|+.|+++++.
T Consensus        11 ~~l~~s~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP-RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCC-SCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCc-cCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            56666666554322 112347888888888764222222356677888888877653221  123344566666655543


Q ss_pred             chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          250 EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       250 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                                            ........+..+++|+.|+++++.++... ...+..+++|++|++++|
T Consensus        90 ----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           90 ----------------------IKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ----------------------CCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTC
T ss_pred             ----------------------CCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCC
Confidence                                  22112223567899999999999887532 334667899999999987

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=1.7e-05  Score=71.47  Aligned_cols=79  Identities=16%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCC-EEEecCc-C-ChhhhhhcCCccce
Q 018106          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE-DLFVTRC-C-LPGKIKISSNQLKN  334 (360)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~L~~c-~-~~~~i~~~~~~L~~  334 (360)
                      .+++|+++++..+....-....+..|++|+.|.+..+ ++. .-...+.+|++|+ .+.+... . ........|++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence            4777888877743332222234567778888887654 221 1122366777887 8887652 1 11233446677777


Q ss_pred             Eecc
Q 018106          335 LLFR  338 (360)
Q Consensus       335 L~l~  338 (360)
                      +++.
T Consensus       302 l~l~  305 (329)
T 3sb4_A          302 VLAT  305 (329)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            7763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.76  E-value=3.4e-05  Score=70.10  Aligned_cols=178  Identities=12%  Similarity=0.023  Sum_probs=110.8

Q ss_pred             ccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---
Q 018106          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---  233 (360)
Q Consensus       159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---  233 (360)
                      ..+|..+  .+++++|+|.++.+..-.  ....+++|++|+|+++.+....-...+.++++|.++.+..+..+..+.   
T Consensus        22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~   99 (350)
T 4ay9_X           22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   99 (350)
T ss_dssp             CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred             CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence            4555444  368999999998876332  356789999999999875211111235678888877666655555442   


Q ss_pred             cccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcce-eeccC-CCCccEEEeeccccCcHHHHHHhcCCC
Q 018106          234 VSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRV-VEVAR-SPHLKKLDLVSVYFADNEFNHLISKFP  309 (360)
Q Consensus       234 i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~  309 (360)
                      +..+++|+.|++.++. ..+.. ......++..+.+..+....... ..+.. ...++.|+++++.++.-  ....-..+
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~~~f~~~  177 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--HNSAFNGT  177 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTSSTTE
T ss_pred             hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--Chhhcccc
Confidence            3567899999999885 11111 12344566777776322211111 11223 34688899998877541  11122346


Q ss_pred             CCCEEEecCcCChhh----hhhcCCccceEecccc
Q 018106          310 SLEDLFVTRCCLPGK----IKISSNQLKNLLFRSC  340 (360)
Q Consensus       310 ~L~~L~L~~c~~~~~----i~~~~~~L~~L~l~~c  340 (360)
                      +|++|.+.++..++.    +...+++|+.|++++.
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  212 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence            799999987644443    3456789999999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.73  E-value=1.6e-05  Score=74.29  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=36.8

Q ss_pred             ccccccccCCchHHHHHHhcCCChhhhhhhcccccchhhh
Q 018106           14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (360)
Q Consensus        14 ~~~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l   53 (360)
                      ....|.++.||+|++.+||+||+.++++++++|||+|+++
T Consensus        13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            3367999999999999999999999999999999999863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=3.5e-05  Score=69.32  Aligned_cols=97  Identities=12%  Similarity=0.000  Sum_probs=57.4

Q ss_pred             CCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCcc-EEEeeccccCcHHHHHHhcCCCCCCE
Q 018106          237 ASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLK-KLDLVSVYFADNEFNHLISKFPSLED  313 (360)
Q Consensus       237 l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~  313 (360)
                      +++|+.+++..+. ..+.. ....+++|+++.+..+ ...-....+.+|++|+ .|.+.. .++. .-...+.+|++|++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCE
Confidence            5788888888753 22222 2236778888888732 2111122357788898 888865 3321 11234678899999


Q ss_pred             EEecCc---CChhhhhhcCCccceEe
Q 018106          314 LFVTRC---CLPGKIKISSNQLKNLL  336 (360)
Q Consensus       314 L~L~~c---~~~~~i~~~~~~L~~L~  336 (360)
                      +++..+   .........+++|+.+.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            998654   11233445667777765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.69  E-value=7.4e-06  Score=76.52  Aligned_cols=37  Identities=32%  Similarity=0.628  Sum_probs=35.4

Q ss_pred             ccccccCCchH----HHHHHhcCCChhhhhhhcccccchhh
Q 018106           16 AMDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQ   52 (360)
Q Consensus        16 ~~d~i~~LPd~----iL~~I~s~L~~~~~~~~~~vskrW~~   52 (360)
                      ..|.|+.||+|    |+.+||+||+.++++++++|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            57999999999    99999999999999999999999984

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.67  E-value=1.2e-05  Score=80.37  Aligned_cols=146  Identities=16%  Similarity=0.078  Sum_probs=77.8

Q ss_pred             CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChH--------HHHHHHhcCCcccEEEeecCCCCCc-cccccCCC
Q 018106          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQ--------MVQKLASECPLLEDLCFSNCWGLKH-LCVSKASK  239 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--------~l~~l~~~cp~Le~L~l~~c~~~~~-~~i~~l~~  239 (360)
                      ++++.|+|.++.+....    -..|+.+.|+.+.+...        .....+..++.|+.|+|.+|..... ..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~~----~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEAN----QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF  248 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCcch----hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence            56788888776655322    12244444444433111        2234467889999999999864321 12346789


Q ss_pred             ccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106          240 LKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (360)
Q Consensus       240 L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~  318 (360)
                      |++|+++++. ..+..-...+++|+.|+++.+... ..+..+..+++|+.|+|+++.++.  +...+..+++|++|+|++
T Consensus       249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTT
T ss_pred             CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCC
Confidence            9999999886 222222246789999999966554 455667889999999999888753  233367889999999999


Q ss_pred             cCC
Q 018106          319 CCL  321 (360)
Q Consensus       319 c~~  321 (360)
                      |..
T Consensus       326 N~l  328 (727)
T 4b8c_D          326 NPL  328 (727)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            844

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.37  E-value=0.00016  Score=59.31  Aligned_cols=119  Identities=13%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             hHHHHHHHhcCCcccEEEeecCCCCCccc-------cccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcce
Q 018106          205 EQMVQKLASECPLLEDLCFSNCWGLKHLC-------VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV  277 (360)
Q Consensus       205 ~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-------i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~  277 (360)
                      .+.+..++..++.|++|+|.+|..++...       +...++|++|+++++.-.-....                  ...
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~------------------~l~   86 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF------------------ALA   86 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH------------------HHH
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH------------------HHH
Confidence            35577788899999999999883343211       12236677777766651100000                  001


Q ss_pred             eeccCCCCccEEEeeccccCcHHHHH---HhcCCCCCCEEEe--cCcCC-------hhhhhhcCCccceEeccccc
Q 018106          278 VEVARSPHLKKLDLVSVYFADNEFNH---LISKFPSLEDLFV--TRCCL-------PGKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       278 ~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~L--~~c~~-------~~~i~~~~~~L~~L~l~~c~  341 (360)
                      ..+...++|++|+|+++.+++.....   .+...+.|++|+|  ++|..       +.......++|+.|+++++.
T Consensus        87 ~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           87 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            11234578999999999998865444   4566789999999  66632       22333456899999998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.37  E-value=0.00029  Score=65.22  Aligned_cols=80  Identities=10%  Similarity=0.035  Sum_probs=38.5

Q ss_pred             cCCCccEEEEEeecCC-----CcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc-C-ChhhhhhcCC
Q 018106          258 SVPSLQQLTLLFYGAR-----RPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC-C-LPGKIKISSN  330 (360)
Q Consensus       258 ~~p~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c-~-~~~~i~~~~~  330 (360)
                      .|++|+.+.+......     .-....+..|++|+.+.+... ++.- -...+.+|++|+.+.|... . ........+ 
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I-~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-  345 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRIL-GQGLLGGNRKVTQLTIPANVTQINFSAFNNT-  345 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCCSCCEEEECTTCCEECTTSSSSS-
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEE-hhhhhcCCCCccEEEECccccEEcHHhCCCC-
Confidence            5666666666522111     001112455667777766532 2110 1123556677777777543 1 112223345 


Q ss_pred             ccceEecccc
Q 018106          331 QLKNLLFRSC  340 (360)
Q Consensus       331 ~L~~L~l~~c  340 (360)
                      +|+.+.+.+.
T Consensus       346 ~L~~l~l~~n  355 (401)
T 4fdw_A          346 GIKEVKVEGT  355 (401)
T ss_dssp             CCCEEEECCS
T ss_pred             CCCEEEEcCC
Confidence            6777777543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.24  E-value=0.00026  Score=57.04  Aligned_cols=80  Identities=13%  Similarity=-0.021  Sum_probs=50.0

Q ss_pred             CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEE
Q 018106          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME  244 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~  244 (360)
                      ++|+.|++.++.+....  ....+++|++|.|+++.++.-. ...+..+++|+.|+|.++.....  -.+..+++|+.|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            67788888887765432  3456778888888887763211 12345677888888877653221  1133457777777


Q ss_pred             ecccc
Q 018106          245 IRSFS  249 (360)
Q Consensus       245 l~~~~  249 (360)
                      +.++.
T Consensus       109 L~~N~  113 (170)
T 3g39_A          109 LLNNP  113 (170)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            77654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.22  E-value=0.00029  Score=57.05  Aligned_cols=80  Identities=11%  Similarity=-0.029  Sum_probs=45.0

Q ss_pred             CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEE
Q 018106          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME  244 (360)
Q Consensus       169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~  244 (360)
                      ++|+.|++.++.+....  ....+++|+.|.|+++.++.-. ...+..+++|+.|+|.++.....  -.+..+++|+.|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            66777777777665332  3445677777777777663211 11245567777777776643211  1133456666666


Q ss_pred             ecccc
Q 018106          245 IRSFS  249 (360)
Q Consensus       245 l~~~~  249 (360)
                      +.++.
T Consensus       112 L~~N~  116 (174)
T 2r9u_A          112 LYNNP  116 (174)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            66554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.13  E-value=0.00055  Score=55.13  Aligned_cols=38  Identities=13%  Similarity=0.168  Sum_probs=19.8

Q ss_pred             cCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          281 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ..+++|+.|+++++.++.- ....+..+++|++|+|++|
T Consensus        75 ~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCccCEe-CHHHhcCCCCCCEEEeCCC
Confidence            4555666666655554431 1122445566666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.93  E-value=0.00067  Score=54.86  Aligned_cols=99  Identities=13%  Similarity=0.033  Sum_probs=64.5

Q ss_pred             cEEEeecCCCCCccccccCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       219 e~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      ..+++.++. ++.+...-.++|+.|+++++. ..+ ......+++|+.|+++.+....-....+..+++|+.|+++++.+
T Consensus        15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            455555443 233322223789999999886 222 12233678999999996655432223357889999999998887


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +.- ....+..+++|++|+|++|
T Consensus        94 ~~l-~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           94 KSI-PRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCC-CTTTTTTCTTCSEEECCSS
T ss_pred             cee-CHHHhccccCCCEEEeCCC
Confidence            642 2234667899999999987

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.89  E-value=0.00073  Score=62.50  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=69.0

Q ss_pred             CCccEEEEeeeecc--CCCCccCCCCCCEEEeeeEEe---ChHHHHHHHhcCCcccEEEeecCC-CCCccccccCCCccE
Q 018106          169 NSVTNLRLVWCRLE--QPFDSIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCW-GLKHLCVSKASKLKI  242 (360)
Q Consensus       169 ~~L~~L~L~~~~~~--~~~~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~-~~~~~~i~~l~~L~~  242 (360)
                      .+|+.+.+.. .+.  .......|++|+.+.+..+.+   ....+.     |+.|+.+.+...- .+..-...++++|+.
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~l~~I~~~aF~~~~~L~~  230 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVTLKEIGSQAFLKTSQLKT  230 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTTCCEECTTTTTTCTTCCC
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCchheehhhHhhCCCCCCE
Confidence            3566666554 111  111344566666666654332   222221     4566666664321 111222234456666


Q ss_pred             EEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCc----HHHHHHhcCCCCCCEEEecC
Q 018106          243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD----NEFNHLISKFPSLEDLFVTR  318 (360)
Q Consensus       243 L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~L~~  318 (360)
                      +.+...-..+..-.....+|+.+.+. .....-....+..|++|+.+.+.++....    ......+.+|++|+.+.|..
T Consensus       231 l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          231 IEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             EecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            66643221121112222456666654 11111111234556666666665443220    01122345566666666654


Q ss_pred             c-C-ChhhhhhcCCccceEec
Q 018106          319 C-C-LPGKIKISSNQLKNLLF  337 (360)
Q Consensus       319 c-~-~~~~i~~~~~~L~~L~l  337 (360)
                      . . ........|.+|+.+.+
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEE
T ss_pred             ceEEEhhhhhcCCCCccEEEE
Confidence            2 0 11122234555666555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.33  E-value=0.0025  Score=55.19  Aligned_cols=80  Identities=24%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             hcCCCccEEEEEeecCCC--cceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh----------h
Q 018106          257 ISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG----------K  324 (360)
Q Consensus       257 ~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~----------~  324 (360)
                      ..+|+|++|.++.+....  .....+..+++|+.|+|+++.+.+..-..-+..+ +|++|.|.+|+...          .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            457788888888554433  2222345788888888888887664212223333 88899988875432          2


Q ss_pred             hhhcCCccceEec
Q 018106          325 IKISSNQLKNLLF  337 (360)
Q Consensus       325 i~~~~~~L~~L~l  337 (360)
                      +...+|+|+.|+=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            4456788887763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.29  E-value=0.0028  Score=54.86  Aligned_cols=38  Identities=21%  Similarity=0.166  Sum_probs=18.3

Q ss_pred             CCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCC
Q 018106          190 LCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCW  227 (360)
Q Consensus       190 ~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~  227 (360)
                      +|+|++|.|+++.+ +-..+...+..+|+|+.|+|.++.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence            45555555555554 222333334455555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.03  E-value=0.0049  Score=55.42  Aligned_cols=88  Identities=20%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             cccCcccccccCCccEEEEee-eeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc-
Q 018106          158 VYTLPQAIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-  233 (360)
Q Consensus       158 ~~~l~~~l~~~~~L~~L~L~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-  233 (360)
                      ...+|. +...++|+.|+|.+ +.+....  ....+++|+.|.|+++.++.-. ...+..+++|+.|+|.++.. ..+. 
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l-~~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL-ESLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCcc-ceeCH
Confidence            345666 66778899999986 7665332  3557889999999998774321 12357789999999988754 3222 


Q ss_pred             --cccCCCccEEEecccc
Q 018106          234 --VSKASKLKIMEIRSFS  249 (360)
Q Consensus       234 --i~~l~~L~~L~l~~~~  249 (360)
                        ... .+|+.|.+.++.
T Consensus        98 ~~~~~-~~L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQG-LSLQELVLSGNP  114 (347)
T ss_dssp             TTTCS-CCCCEEECCSSC
T ss_pred             HHccc-CCceEEEeeCCC
Confidence              122 248899888665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.71  E-value=0.014  Score=52.44  Aligned_cols=61  Identities=11%  Similarity=0.029  Sum_probs=32.0

Q ss_pred             ccCCCCCCEEEeee-EEeChHHHHHHHhcCCcccEEEeecCCCCCcc---ccccCCCccEEEecccc
Q 018106          187 SIMLCSLKKLTLER-VCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS  249 (360)
Q Consensus       187 ~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~l~~L~~L~l~~~~  249 (360)
                      ...+++|++|.|++ +.++.-.- ..+.++++|+.|+|.++.. ..+   .+.++++|+.|+++++.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEECCSSC
T ss_pred             CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeCCCCc
Confidence            34455677777764 55421111 1245567777777776642 221   12345666666666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.12  E-value=0.059  Score=44.16  Aligned_cols=44  Identities=7%  Similarity=0.147  Sum_probs=24.5

Q ss_pred             HHHHHHHhcCCcccEEEeecCCCCCccc-------cccCCCccEEEecccc
Q 018106          206 QMVQKLASECPLLEDLCFSNCWGLKHLC-------VSKASKLKIMEIRSFS  249 (360)
Q Consensus       206 ~~l~~l~~~cp~Le~L~l~~c~~~~~~~-------i~~l~~L~~L~l~~~~  249 (360)
                      +.+..++...+.|++|+|.++..++...       +..-..|+.|++.+|.
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~   81 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA   81 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence            4566666777777777776642332211       1111466667766664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.34  E-value=0.069  Score=48.83  Aligned_cols=76  Identities=14%  Similarity=0.107  Sum_probs=42.5

Q ss_pred             cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc--cCcHHHHHHhcCCCCCCEEEecCc-C-ChhhhhhcCCccc
Q 018106          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY--FADNEFNHLISKFPSLEDLFVTRC-C-LPGKIKISSNQLK  333 (360)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~c-~-~~~~i~~~~~~L~  333 (360)
                      .+.+|+.+.+.. +...-....+.+|.+|+.+.|...-  +...    .+.+|.+|+.+++... . ........|++|+
T Consensus       295 ~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          295 GCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYLVEEIGKR----SFRGCTSLSNINFPLSLRKIGANAFQGCINLK  369 (394)
T ss_dssp             TCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTBTTCTTCC
T ss_pred             cccccccccccc-ccceechhhhcCCCCCCEEEeCCcccEEhHH----hccCCCCCCEEEECccccEehHHHhhCCCCCC
Confidence            566777777651 1110011235667888888774321  2222    3567888888888653 1 1223345677888


Q ss_pred             eEecc
Q 018106          334 NLLFR  338 (360)
Q Consensus       334 ~L~l~  338 (360)
                      .+++.
T Consensus       370 ~i~lp  374 (394)
T 4fs7_A          370 KVELP  374 (394)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            88775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.21  E-value=0.16  Score=46.46  Aligned_cols=14  Identities=14%  Similarity=0.235  Sum_probs=7.6

Q ss_pred             hcCCCCCCEEEecC
Q 018106          305 ISKFPSLEDLFVTR  318 (360)
Q Consensus       305 ~~~~~~L~~L~L~~  318 (360)
                      +.+|++|+.+++.+
T Consensus       353 F~~C~~L~~i~~~~  366 (394)
T 4gt6_A          353 FSNCTALNNIEYSG  366 (394)
T ss_dssp             GTTCTTCCEEEESS
T ss_pred             hhCCCCCCEEEECC
Confidence            44555555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.84  E-value=0.077  Score=48.51  Aligned_cols=55  Identities=13%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             ccCCCCccEEEeeccc--cCcHHHHHHhcCCCCCCEEEecCc-CC-hhhhhhcCCccceEecc
Q 018106          280 VARSPHLKKLDLVSVY--FADNEFNHLISKFPSLEDLFVTRC-CL-PGKIKISSNQLKNLLFR  338 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~c-~~-~~~i~~~~~~L~~L~l~  338 (360)
                      +..+.+|+.+.+...-  +.+.    .+.+|.+|+.++|... .. .......|.+|+.+.+.
T Consensus       293 F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             TTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCC
T ss_pred             ccccccccccccccccceechh----hhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEEC
Confidence            3467788888775321  2222    3667888998888653 11 12233456777777763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.75  E-value=0.49  Score=38.65  Aligned_cols=38  Identities=16%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             CCCCEEEeeeE-EeChHHHHHH---HhcCCcccEEEeecCCC
Q 018106          191 CSLKKLTLERV-CLDEQMVQKL---ASECPLLEDLCFSNCWG  228 (360)
Q Consensus       191 ~~L~~L~L~~~-~~~~~~l~~l---~~~cp~Le~L~l~~c~~  228 (360)
                      +.|+.|+|+++ .+++++...+   +.....|+.|+|.+|..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i   82 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI   82 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence            45666666554 5555543333   34566777777776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.72  E-value=0.2  Score=45.67  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             cCCCCCCEEEeeeEE--eChHHHHHHHhcCCcccEEEeecC-CCCCccccccCCCccEEEeccccchhhhH-hhcCCCcc
Q 018106          188 IMLCSLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRSFSEEIEIV-EISVPSLQ  263 (360)
Q Consensus       188 ~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c-~~~~~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~p~L~  263 (360)
                      ..|.+|+.+.+....  ++..    .+.+|+.|+.+.+... ..+..-...+|.+|+.+.+...-..+..- ...|.+|+
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred             eecccccEEecccccceecCc----ccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence            456777777774332  2322    2456888888887532 11223334457889999886432122222 23678999


Q ss_pred             EEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106          264 QLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (360)
Q Consensus       264 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~  318 (360)
                      ++.+.. ....-....+.+|.+|+.+.+.++...    ...+..+.+|+.+.+..
T Consensus       338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC-------
T ss_pred             EEEECc-ccCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCC
Confidence            998861 111112234678999999999765322    23356678888887754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=86.33  E-value=0.87  Score=41.01  Aligned_cols=99  Identities=9%  Similarity=0.025  Sum_probs=44.4

Q ss_pred             CCCccEEEeccccchhhhH-hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEE
Q 018106          237 ASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  315 (360)
Q Consensus       237 l~~L~~L~l~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  315 (360)
                      +..|+.+.+...-..+... ...+.+|+.+.+.. ....-....+..|++|+.+.+.++.++.- -...+.+|.+|+.+.
T Consensus       239 ~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          239 MKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVKLSSVT  316 (379)
T ss_dssp             CSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTTCCEEE
T ss_pred             CccceEEEcCCCccEeCccccceeehhccccccc-cceecccccccccccccccccccccccee-hhhhhcCCCCCCEEE
Confidence            4556666554322111111 12455566666541 11111111245667777777754432210 011355677777777


Q ss_pred             ecCc-CCh-hhhhhcCCccceEec
Q 018106          316 VTRC-CLP-GKIKISSNQLKNLLF  337 (360)
Q Consensus       316 L~~c-~~~-~~i~~~~~~L~~L~l  337 (360)
                      |... ..+ ......|.+|+.+.+
T Consensus       317 lp~~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          317 LPTALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCCCCC
T ss_pred             cCccccEEHHHHhhCCCCCCEEEE
Confidence            7542 111 122334556666555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=83.18  E-value=1.1  Score=40.36  Aligned_cols=103  Identities=7%  Similarity=0.077  Sum_probs=62.0

Q ss_pred             HhcCCcccEEEeecCC-CCCccccccCCCccEEEeccccchhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEE
Q 018106          212 ASECPLLEDLCFSNCW-GLKHLCVSKASKLKIMEIRSFSEEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL  289 (360)
Q Consensus       212 ~~~cp~Le~L~l~~c~-~~~~~~i~~l~~L~~L~l~~~~~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (360)
                      +.+|..|+.+.+...- .+.......+.+|+.+.+......+. .....|++|+.+.+.......-..-.+.+|.+|+.+
T Consensus       236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             ccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            4567888888875431 12223334567888888864431222 123477899999886322211112246788999999


Q ss_pred             Eeecc--ccCcHHHHHHhcCCCCCCEEEecC
Q 018106          290 DLVSV--YFADNEFNHLISKFPSLEDLFVTR  318 (360)
Q Consensus       290 ~l~~~--~~~~~~~~~~~~~~~~L~~L~L~~  318 (360)
                      .|...  .+...    .+.+|.+|+++.|..
T Consensus       316 ~lp~~l~~I~~~----aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          316 TLPTALKTIQVY----AFKNCKALSTISYPK  342 (379)
T ss_dssp             ECCTTCCEECTT----TTTTCTTCCCCCCCT
T ss_pred             EcCccccEEHHH----HhhCCCCCCEEEECC
Confidence            99532  13333    367889999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	7e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	7e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.003

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 12 ETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
          E     D IS LP  +  +++S+L  K++ + +   + W  L
Sbjct: 11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPIL 60
           D I+ LP  I   + +YL  +++  +  +S+ WN++      L
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 17 MDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQL 53
           D I+ LP      I  +++SYL AK +    ++ K+W ++
Sbjct: 8  RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 21 SELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
            LP  ++  + S L   E+ + S + K+W +L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.18
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.91
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.89
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.66
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.55
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.43
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.07
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.02
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.87
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.08

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.2e-16  Score=137.43  Aligned_cols=198  Identities=20%  Similarity=0.261  Sum_probs=144.1

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEE-eChHHHHHHHhcCCcc
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~L  218 (360)
                      .++++|+  +..+......+...+..|++|++|++.+|.+....  ....+++|++|+++++. +++.++..++.+||+|
T Consensus        46 ~~L~~Ld--Ls~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMD--LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEE--CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEE--CCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4788888  65544444445555566999999999999765432  34568999999999975 5889999999999999


Q ss_pred             cEEEeecCCCCCcccc-----ccCCCccEEEecccc-----chhhhHhhcCCCccEEEEEeecC-CCcceeeccCCCCcc
Q 018106          219 EDLCFSNCWGLKHLCV-----SKASKLKIMEIRSFS-----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLK  287 (360)
Q Consensus       219 e~L~l~~c~~~~~~~i-----~~l~~L~~L~l~~~~-----~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~  287 (360)
                      ++|++.+|..+....+     ..+++|++|.+.+|.     ..+..+.-.+|+|++|++..+.. .+.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            9999999987654222     124799999999874     23445556899999999986543 334445577899999


Q ss_pred             EEEeecc-ccCcHHHHHHhcCCCCCCEEEecCcCC---hhhhhhcCCccceEecccccccccc
Q 018106          288 KLDLVSV-YFADNEFNHLISKFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRSCKYLKSA  346 (360)
Q Consensus       288 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i~~~~~~L~~L~l~~c~~l~~~  346 (360)
                      +|++.++ .+++..+.. +..+|+|++|++.+|..   +..+...+|+|+   + +|.+++..
T Consensus       204 ~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         204 HLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             EEECTTCTTCCGGGGGG-GGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred             EEECCCCCCCChHHHHH-HhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence            9999874 578776665 56799999999999833   344445566655   3 45555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.9e-14  Score=121.55  Aligned_cols=173  Identities=23%  Similarity=0.266  Sum_probs=127.5

Q ss_pred             cccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcccc----ccCC
Q 018106          166 FSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCV----SKAS  238 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i----~~l~  238 (360)
                      ....+|++|++++|.+....   ....|++|++|.+.++.+++..+.. +..+|+|++|++.+|..++...+    .++|
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHH
Confidence            34578999999998876433   4567899999999999888888876 56799999999999988764322    3579


Q ss_pred             CccEEEecccc----chhh-hHhhcCCCccEEEEEeecC--CC-cceeeccCCCCccEEEeecc-ccCcHHHHHHhcCCC
Q 018106          239 KLKIMEIRSFS----EEIE-IVEISVPSLQQLTLLFYGA--RR-PRVVEVARSPHLKKLDLVSV-YFADNEFNHLISKFP  309 (360)
Q Consensus       239 ~L~~L~l~~~~----~~~~-~~~~~~p~L~~L~l~~~~~--~~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~  309 (360)
                      +|++|++++|.    ..+. .+...+++|+.|.+..+..  .+ ........+|+|++|+++++ .+++..+.. +..++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-l~~~~  200 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLN  200 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-hcccC
Confidence            99999999986    1122 2233578999999984321  11 12223467899999999875 477766555 45789


Q ss_pred             CCCEEEecCcCChhh----hhhcCCccceEecccc
Q 018106          310 SLEDLFVTRCCLPGK----IKISSNQLKNLLFRSC  340 (360)
Q Consensus       310 ~L~~L~L~~c~~~~~----i~~~~~~L~~L~l~~c  340 (360)
                      +|++|+|++|..+.+    ....+|+|+.|++.+|
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            999999999854322    1246789999999988

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.6e-12  Score=75.69  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             ccCCchHHHHHHhcCCChhhhhhhcccccchhhhhc
Q 018106           20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   55 (360)
Q Consensus        20 i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~   55 (360)
                      ++.||+||+.+||+|||.+|++++++|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999998753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=6.1e-11  Score=97.51  Aligned_cols=144  Identities=14%  Similarity=0.080  Sum_probs=80.4

Q ss_pred             cCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecc
Q 018106          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  247 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~  247 (360)
                      .++|++|++.++.+..-.....+++|++|.++++.+++-.  . +.++|+|++|++.+|.......+.++++|+.|.+.+
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCcccccccccccccccccccccccccccccccc
Confidence            3455666666655544333455667777777666653211  1 456677777777666543333345566777777766


Q ss_pred             ccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          248 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       248 ~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +..........+++|+.|.++.+....  ...+..+++|+.|++.++.+++-.   .+..+++|++|++++|
T Consensus       116 ~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~---~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         116 NQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK---PLANLTTLERLDISSN  182 (199)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSS
T ss_pred             cccccccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc---cccCCCCCCEEECCCC
Confidence            551111112245666666666433221  113566777777777776665421   2556777777777776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=7e-11  Score=99.19  Aligned_cols=184  Identities=14%  Similarity=0.098  Sum_probs=123.0

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .++++|.  +..+...  .+ ..+..+++|++|++.++.+........+++|+.+.++++.++.  +.. +.+++.|+.+
T Consensus        41 ~~L~~L~--l~~~~i~--~l-~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLS--AFGTGVT--TI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEE--CTTSCCC--CC-TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEE
T ss_pred             CCcCEEE--CCCCCCC--cc-hhHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccc
Confidence            5888888  6544332  23 2356688999999988877654446778889999888877632  222 4678889999


Q ss_pred             EeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHH
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  301 (360)
                      .+.+|.......+...+.++.+.+..+......-...+++|+.|.+..+.....  ..+.++++|+.|+++++.+++-  
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--  188 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--  188 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCCC--
Confidence            988876555444455578888888776511111134677888888884433222  2367788899999988877652  


Q ss_pred             HHHhcCCCCCCEEEecCcCChhhh--hhcCCccceEeccc
Q 018106          302 NHLISKFPSLEDLFVTRCCLPGKI--KISSNQLKNLLFRS  339 (360)
Q Consensus       302 ~~~~~~~~~L~~L~L~~c~~~~~i--~~~~~~L~~L~l~~  339 (360)
                      . .+..+++|++|+|++|. +..+  ...+++|+.|++++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            1 25678889999998873 3333  24577888887753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=1.8e-10  Score=96.54  Aligned_cols=175  Identities=13%  Similarity=0.042  Sum_probs=127.0

Q ss_pred             cccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEe
Q 018106          166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l  245 (360)
                      ....+|+.|++.+|.+..-.....+++|++|.++++.+.+-.  . +..+++|+.|.+.+|.....-.+..+++|+.+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccccccccccccccccccccc
Confidence            346899999999998875545678999999999999874321  1 6889999999999886533334667899999999


Q ss_pred             ccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--Chh
Q 018106          246 RSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPG  323 (360)
Q Consensus       246 ~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~  323 (360)
                      ..+......-....+.+..+.+..+...  ....+..+++|+.|.+.++.+.+..   .+..+++|++|++++|.  .+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~l~~l~  189 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNKISDIS  189 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccchhccccchhhhhchhhhhc--hhhhhccccccccccccccccccch---hhcccccceecccCCCccCCCh
Confidence            9886111112235678888888744332  2234678899999999988776532   26789999999999982  222


Q ss_pred             hhhhcCCccceEecccccccccccccc
Q 018106          324 KIKISSNQLKNLLFRSCKYLKSALCVK  350 (360)
Q Consensus       324 ~i~~~~~~L~~L~l~~c~~l~~~~~~~  350 (360)
                      . ...+++|+.|+++++ .++++..+.
T Consensus       190 ~-l~~l~~L~~L~Ls~N-~lt~i~~l~  214 (227)
T d1h6ua2         190 P-LASLPNLIEVHLKNN-QISDVSPLA  214 (227)
T ss_dssp             G-GGGCTTCCEEECTTS-CCCBCGGGT
T ss_pred             h-hcCCCCCCEEECcCC-cCCCCcccc
Confidence            2 346789999999998 466655443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=1.2e-10  Score=96.59  Aligned_cols=159  Identities=16%  Similarity=0.119  Sum_probs=67.8

Q ss_pred             CccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecccc
Q 018106          170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS  249 (360)
Q Consensus       170 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~  249 (360)
                      +|+.|.+.++.+........+++|++|.++++.+++-  .. ++.+++|+.|++.+|..-.--.+..+++|+.|.+.++.
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc--cc-cccCcccccccccccccccccccccccccccccccccc
Confidence            3444444444333222233444455555544444211  11 23444555555544432111122334455555554443


Q ss_pred             -chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhh--h
Q 018106          250 -EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI--K  326 (360)
Q Consensus       250 -~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i--~  326 (360)
                       ..+.. ....++++.+.+..+.....  .....+++|+.+++.++.+++-  . -+..+++|++|++++|. ++.+  .
T Consensus       124 ~~~~~~-l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i--~-~l~~l~~L~~L~Ls~N~-i~~l~~l  196 (210)
T d1h6ta2         124 ISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V-PLAGLTKLQNLYLSKNH-ISDLRAL  196 (210)
T ss_dssp             CCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCSSC-CCBCGGG
T ss_pred             cccccc-cccccccccccccccccccc--cccccccccccccccccccccc--c-cccCCCCCCEEECCCCC-CCCChhh
Confidence             11111 12344555555543222111  1234556666666666555431  1 14556666666666652 1111  2


Q ss_pred             hcCCccceEecc
Q 018106          327 ISSNQLKNLLFR  338 (360)
Q Consensus       327 ~~~~~L~~L~l~  338 (360)
                      ..+++|+.|+|+
T Consensus       197 ~~l~~L~~L~Ls  208 (210)
T d1h6ta2         197 AGLKNLDVLELF  208 (210)
T ss_dssp             TTCTTCSEEEEE
T ss_pred             cCCCCCCEEEcc
Confidence            344566666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=5.5e-10  Score=92.46  Aligned_cols=164  Identities=16%  Similarity=0.068  Sum_probs=120.2

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .+++++.  +..+....  ++ .+..+++|++|++.++.+........+++|+.|.++++.+++  +.. +..+|+|+.|
T Consensus        46 ~~L~~L~--l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQII--ANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEE--CTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             cCccEEE--CcCCCCCC--ch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-cccccccccc
Confidence            4788888  54433222  22 356689999999999987755445678999999999998753  222 6779999999


Q ss_pred             EeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHH
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  301 (360)
                      ++.+|.....-.+.++++|+.+.+..+.-.-....-.+++|+.+.+..+.....  ..+.++++|++|+++++.+++  +
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~--l  193 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD--L  193 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB--C
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccCCCCCCEEECCCCCCCC--C
Confidence            999887544444566789999999887611112234678999999996544322  236789999999999998875  2


Q ss_pred             HHHhcCCCCCCEEEecC
Q 018106          302 NHLISKFPSLEDLFVTR  318 (360)
Q Consensus       302 ~~~~~~~~~L~~L~L~~  318 (360)
                      . .+..+++|++|+|++
T Consensus       194 ~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCSEEEEEE
T ss_pred             h-hhcCCCCCCEEEccC
Confidence            2 367899999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=7.2e-10  Score=90.90  Aligned_cols=159  Identities=18%  Similarity=0.147  Sum_probs=117.3

Q ss_pred             cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  221 (360)
                      .++++|.  +.......  + ..+..+++|++|++++|.+........+++|+.|.++++.+..-.  . +.+++.|+.|
T Consensus        40 ~~l~~L~--l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQ--ADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGL  111 (199)
T ss_dssp             TTCCEEE--CTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEE
T ss_pred             cCCCEEE--CCCCCCCC--c-cccccCCCcCcCccccccccCcccccCCccccccccccccccccc--c-cccccccccc
Confidence            5889998  65443322  2 235568999999999998876545678999999999998773221  2 5789999999


Q ss_pred             EeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (360)
Q Consensus       222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (360)
                      ++.+|.......+..+++|+.|.++++. ..+.. ...+++|+.|.+..+.....  ..++++++|+.|+++++.+++- 
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i-  187 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI-  187 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhccccc-ccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCC-
Confidence            9998876655556678999999999885 22222 23678999999985543321  2368899999999999988762 


Q ss_pred             HHHHhcCCCCCCEE
Q 018106          301 FNHLISKFPSLEDL  314 (360)
Q Consensus       301 ~~~~~~~~~~L~~L  314 (360)
                       . .+..+++|++|
T Consensus       188 -~-~l~~L~~L~~L  199 (199)
T d2omxa2         188 -S-VLAKLTNLESL  199 (199)
T ss_dssp             -G-GGGGCTTCSEE
T ss_pred             -c-cccCCCCCCcC
Confidence             2 35678888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=4e-09  Score=94.87  Aligned_cols=163  Identities=16%  Similarity=0.091  Sum_probs=69.5

Q ss_pred             ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~  246 (360)
                      .+++++.+.+.++.+........+++|++|.++++.+.+-  . .+..+++|++|++.+|...+...+..+++|+.|.+.
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  271 (384)
T d2omza2         195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG  271 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             cccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCcccccccCCEeecc
Confidence            3455555555555444332233445555555555544221  1 134455555555555543332333444555555555


Q ss_pred             ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--Chh
Q 018106          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPG  323 (360)
Q Consensus       247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~  323 (360)
                      ++. ..+.. ....+.++.+....+....  ...+..+++++.|+++++.+++-.   .+..+|+|++|++++|.  .+.
T Consensus       272 ~~~l~~~~~-~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~~l~  345 (384)
T d2omza2         272 ANQISNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVS  345 (384)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCG
T ss_pred             CcccCCCCc-ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCCCCCCh
Confidence            443 11111 1133444444444222211  112344455555555544443311   13444555555555541  122


Q ss_pred             hhhhcCCccceEeccc
Q 018106          324 KIKISSNQLKNLLFRS  339 (360)
Q Consensus       324 ~i~~~~~~L~~L~l~~  339 (360)
                      . ...+++|+.|++++
T Consensus       346 ~-l~~l~~L~~L~l~~  360 (384)
T d2omza2         346 S-LANLTNINWLSAGH  360 (384)
T ss_dssp             G-GGGCTTCCEEECCS
T ss_pred             h-HcCCCCCCEEECCC
Confidence            1 22344555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.9e-10  Score=95.76  Aligned_cols=170  Identities=16%  Similarity=0.045  Sum_probs=91.7

Q ss_pred             cCceEEEeecccCCCccccCcc-cccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  220 (360)
                      +++++|+  +.....  ..++. .+...++|++|+|.++.+........+++|++|.++++.+...  ...+...++|+.
T Consensus        31 ~~l~~L~--Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILH--LSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEE--CTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCE
T ss_pred             cCCCEEE--CcCCcC--CCcCHHHhhcccccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence            3667777  433221  22332 2334677777777776654322334567777777777765321  112456677777


Q ss_pred             EEeecCCCCC--ccccccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106          221 LCFSNCWGLK--HLCVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (360)
Q Consensus       221 L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (360)
                      |++.++....  ......+++++.|.+.++. ..+. ......++|+.+++..+.........+..+++|++|+|+++.+
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence            7777665322  1222334677777776654 1111 1123456677777764443332223355667777777777665


Q ss_pred             CcHHHHHHhcCCCCCCEEEecCc
Q 018106          297 ADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +.  +..-+...++|+.|+|+++
T Consensus       185 ~~--lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         185 YT--IPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CC--CCTTTTTTCCCSEEECCSC
T ss_pred             cc--cChhHCCCCCCCEEEecCC
Confidence            52  1112334567777777765

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.4e-10  Score=83.97  Aligned_cols=40  Identities=25%  Similarity=0.468  Sum_probs=36.9

Q ss_pred             ccccccCCchHHHHHHhcCCChhhhhhhcccccchhhhhc
Q 018106           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   55 (360)
Q Consensus        16 ~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~   55 (360)
                      .+|.|+.||+||+.+||+||+.+|++++++|||+|+++..
T Consensus         2 k~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           2 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999999999999997543

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.7e-10  Score=81.49  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=37.2

Q ss_pred             ccccccccCCchHHHHHHhcCCChhhhhhhcccccchhhh
Q 018106           14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (360)
Q Consensus        14 ~~~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l   53 (360)
                      +-..|.|+.||+||+.+||+||+.+|++++++|||+|+.+
T Consensus        13 ~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             hhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3457999999999999999999999999999999999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=1.6e-08  Score=90.91  Aligned_cols=164  Identities=15%  Similarity=0.103  Sum_probs=122.9

Q ss_pred             cccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEe
Q 018106          166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (360)
Q Consensus       166 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l  245 (360)
                      ..+++|+.|++.++.+...+....+++|+.|.+.++.+++-.  . +..+++|++|++.++.......+..++.++.+.+
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC--c-ccccccCCEeeccCcccCCCCccccccccccccc
Confidence            447899999999998876555678899999999999874321  1 6789999999999876544445566789999999


Q ss_pred             cccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhh
Q 018106          246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK  324 (360)
Q Consensus       246 ~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~  324 (360)
                      ..+. ..+. ....+++++.|+++.+...+-  ..+..+++|+.|+++++.+++-  . .+..+++|++|++++|.. ..
T Consensus       293 ~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l--~~l~~l~~L~~L~L~~n~l~~l--~-~l~~l~~L~~L~l~~N~l-~~  365 (384)
T d2omza2         293 NENQLEDIS-PISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDV--S-SLANLTNINWLSAGHNQI-SD  365 (384)
T ss_dssp             CSSCCSCCG-GGGGCTTCSEEECCSSCCSCC--GGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCCEEECCSSCC-CB
T ss_pred             ccccccccc-ccchhcccCeEECCCCCCCCC--cccccCCCCCEEECCCCCCCCC--h-hHcCCCCCCEEECCCCcC-CC
Confidence            8775 2222 234788999999995544332  2367899999999999988762  2 267899999999998732 22


Q ss_pred             h--hhcCCccceEeccc
Q 018106          325 I--KISSNQLKNLLFRS  339 (360)
Q Consensus       325 i--~~~~~~L~~L~l~~  339 (360)
                      +  ...+++|+.|+|++
T Consensus       366 l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         366 LTPLANLTRITQLGLND  382 (384)
T ss_dssp             CGGGTTCTTCSEEECCC
T ss_pred             ChhhccCCCCCEeeCCC
Confidence            2  35678999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.76  E-value=6.2e-09  Score=90.93  Aligned_cols=188  Identities=15%  Similarity=0.101  Sum_probs=96.1

Q ss_pred             cCceEEEeecccCCCccccCcc-cccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  218 (360)
                      ++++.|+  +...  .-..++. .+..+++|++|++.++.+....  ....+++|++|.+.++.+..-  .  ...++.|
T Consensus        31 ~~l~~L~--Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l--~--~~~~~~l  102 (305)
T d1xkua_          31 PDTALLD--LQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTL  102 (305)
T ss_dssp             TTCCEEE--CCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTC
T ss_pred             CCCCEEE--CcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC--c--cchhhhh
Confidence            4677777  5432  2234443 3345788888888887765332  345677888888877654210  0  0123344


Q ss_pred             cEEEeecCCC------------------------CC----ccccccCCCccEEEeccccchhhhHh-hcCCCccEEEEEe
Q 018106          219 EDLCFSNCWG------------------------LK----HLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLF  269 (360)
Q Consensus       219 e~L~l~~c~~------------------------~~----~~~i~~l~~L~~L~l~~~~~~~~~~~-~~~p~L~~L~l~~  269 (360)
                      +.|.+.++..                        ..    ......+++|+.+.+.++.  +..+. ...++|+.|++..
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~--l~~l~~~~~~~L~~L~l~~  180 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELHLDG  180 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCCTTCSEEECTT
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC--ccccCcccCCccCEEECCC
Confidence            4444433221                        00    0011234566666666554  11121 1345666666663


Q ss_pred             ecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEecccc
Q 018106          270 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c  340 (360)
                      +.........+..++.++.|+++++.+..-. ...+.++++|++|+|++|.  .+..-...+++|+.|+++++
T Consensus       181 n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         181 NKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             CcCCCCChhHhhccccccccccccccccccc-cccccccccceeeecccccccccccccccccCCCEEECCCC
Confidence            3322222233456666777777666554421 2234566777777777662  12112234567777777664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.3e-09  Score=90.22  Aligned_cols=175  Identities=19%  Similarity=0.133  Sum_probs=120.7

Q ss_pred             ccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc-cccc
Q 018106          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVS  235 (360)
Q Consensus       159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~-~~i~  235 (360)
                      ..+|..+.  ++|+.|+|.++.+....  ....+++|++|.|+++.++.  +.. ....|+|+.|++.++..... ....
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~   97 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLGQ   97 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCTT
T ss_pred             CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-ccccccccccccccccccccccccc
Confidence            45554442  68999999998875322  35678999999999988742  111 35789999999998864322 1234


Q ss_pred             cCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCE
Q 018106          236 KASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED  313 (360)
Q Consensus       236 ~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  313 (360)
                      .+++|+.|++.++. ..+ .......++++.|.+..+.........+..+++++.|++.++.++.- ....+..+++|++
T Consensus        98 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~~~~l~~L~~  176 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDT  176 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCE
T ss_pred             cccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc-Cccccccccccce
Confidence            57899999999876 222 12234667899999985544333333456789999999999887653 2334677899999


Q ss_pred             EEecCcC--ChhhhhhcCCccceEeccc
Q 018106          314 LFVTRCC--LPGKIKISSNQLKNLLFRS  339 (360)
Q Consensus       314 L~L~~c~--~~~~i~~~~~~L~~L~l~~  339 (360)
                      |+|++|.  .+..-....++|+.|++++
T Consensus       177 L~Ls~N~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         177 LLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             EECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             eecccCCCcccChhHCCCCCCCEEEecC
Confidence            9999983  2222223567899999985

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.6e-08  Score=87.29  Aligned_cols=171  Identities=16%  Similarity=0.053  Sum_probs=69.4

Q ss_pred             ccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEE-eChHHHHHHHhcCCcccEEEeecCCCCC--ccccccCCCcc
Q 018106          167 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLK  241 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~i~~l~~L~  241 (360)
                      .+++|++|++.++.+....  ....++.++.+.+.... +..-. ...+.++++|++|++.++....  .......++|+
T Consensus        54 ~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  132 (284)
T d1ozna_          54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ  132 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-chhhcccccCCEEecCCcccccccccccchhcccc
Confidence            3566777776665543111  22233444444433221 11000 1113445556666555543211  11112234555


Q ss_pred             EEEecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          242 IMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       242 ~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      .+++.++. ..+. ......++|+.|++..+....-....+..+++|+.+.+.++.++.- ....+..+++|++|++++|
T Consensus       133 ~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred             hhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc-ChhHhhhhhhccccccccc
Confidence            55555443 1111 1111344555555553332211112234455555555554444331 1222444555555555554


Q ss_pred             C---ChhhhhhcCCccceEeccc
Q 018106          320 C---LPGKIKISSNQLKNLLFRS  339 (360)
Q Consensus       320 ~---~~~~i~~~~~~L~~L~l~~  339 (360)
                      .   ........+++|+.|++++
T Consensus       212 ~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         212 NLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccccccccccccccccCEEEecC
Confidence            1   1122233445555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.7e-08  Score=87.13  Aligned_cols=180  Identities=16%  Similarity=0.077  Sum_probs=124.2

Q ss_pred             cccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc---
Q 018106          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---  232 (360)
Q Consensus       158 ~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---  232 (360)
                      ...+|..+.  +++++|+|+++.+....  ....+++|++|.++++.+..-.. .....++.++.+.+.....+..+   
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccch
Confidence            344554332  57899999998875322  35678999999999887742222 23567889999988766555443   


Q ss_pred             ccccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCC
Q 018106          233 CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS  310 (360)
Q Consensus       233 ~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  310 (360)
                      .+.++++|+.|++..+. ..+.. .....++|+.+.+..+....-....+..+++|+.|++.++.++.- ....+.++++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l-~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc-chhhhccccc
Confidence            34567899999999886 12222 233577899999985554332233467789999999999887642 2334678999


Q ss_pred             CCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106          311 LEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       311 L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~  341 (360)
                      |+.+++.+|...   .......++|+.|++++..
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccc
Confidence            999999988322   2334567899999998764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.66  E-value=2.9e-08  Score=86.92  Aligned_cols=59  Identities=12%  Similarity=-0.011  Sum_probs=31.5

Q ss_pred             ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEecccc
Q 018106          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c  340 (360)
                      +..+++++.+++.++.+.... . .+..+++|++|+|++|...   ......+++|+.|+++++
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~~-~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccc-c-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            345566666666655554321 1 2345566777777666221   122334566777766654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.7e-08  Score=79.48  Aligned_cols=37  Identities=19%  Similarity=0.088  Sum_probs=17.7

Q ss_pred             ccCCCCccEEEeeccccCcH--HHHHHhcCCCCCCEEEe
Q 018106          280 VARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFV  316 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~L  316 (360)
                      +..+|+|++|++.++.++..  .....+..+|+|++|+-
T Consensus       108 l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         108 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            34555666666655544321  11223445566665553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.59  E-value=6.2e-08  Score=85.92  Aligned_cols=175  Identities=15%  Similarity=0.065  Sum_probs=87.8

Q ss_pred             ccCCccEEEEeeeeccCCC------CccCCCCCCEEEeeeEEeChHHHHHH------------HhcCCcccEEEeecCCC
Q 018106          167 SANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQMVQKL------------ASECPLLEDLCFSNCWG  228 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~l~~l------------~~~cp~Le~L~l~~c~~  228 (360)
                      .+++|+.|++.+|.+...+      ....+++|++|.++++.+++.+...+            ....+.|+.|.+.++..
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            4566666666666554432      11235566666666665533322111            23456666666655432


Q ss_pred             CCc--c----ccccCCCccEEEeccccc---hhhh----HhhcCCCccEEEEEeecCCCc----ceeeccCCCCccEEEe
Q 018106          229 LKH--L----CVSKASKLKIMEIRSFSE---EIEI----VEISVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDL  291 (360)
Q Consensus       229 ~~~--~----~i~~l~~L~~L~l~~~~~---~~~~----~~~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l  291 (360)
                      -..  .    .+..+++|+.|.+..|.-   ....    ....+++|+.|+++.+.....    ....+..+++|+.|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            111  0    012245666666666541   1111    112456677777664332111    1123456677777777


Q ss_pred             eccccCcHHHHHHhc-----CCCCCCEEEecCcCCh-------hh-hhhcCCccceEeccccc
Q 018106          292 VSVYFADNEFNHLIS-----KFPSLEDLFVTRCCLP-------GK-IKISSNQLKNLLFRSCK  341 (360)
Q Consensus       292 ~~~~~~~~~~~~~~~-----~~~~L~~L~L~~c~~~-------~~-i~~~~~~L~~L~l~~c~  341 (360)
                      +++.+++.....+..     ..+.|++|+|++|...       .. +....++|+.|++.+..
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            777776654444332     2356777777776321       11 11245677777776543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.57  E-value=4.7e-08  Score=86.73  Aligned_cols=214  Identities=16%  Similarity=0.115  Sum_probs=141.2

Q ss_pred             hhhHHHHHHHHHH-cCceEEEeecccCCCcc---ccCcccccccCCccEEEEeeeeccCCC------------CccCCCC
Q 018106          129 APIVDRWIRLAVE-NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF------------DSIMLCS  192 (360)
Q Consensus       129 ~~~~~~~l~~~~~-~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~L~~~~~~~~~------------~~~~~~~  192 (360)
                      ..+...++..... ..+++|+  +.......   ..+-..+...++|+.|++.++......            ....+++
T Consensus        17 ~e~~~~l~~~L~~~~~l~~L~--Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~   94 (344)
T d2ca6a1          17 TEDEKSVFAVLLEDDSVKEIV--LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   94 (344)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEE--CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhhCCCCCEEE--CcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCC
Confidence            3456666666554 7799999  64332211   223334556799999999887533111            2345789


Q ss_pred             CCEEEeeeEEeChHH---HHHHHhcCCcccEEEeecCCCCC-----------ccc----cccCCCccEEEecccc---ch
Q 018106          193 LKKLTLERVCLDEQM---VQKLASECPLLEDLCFSNCWGLK-----------HLC----VSKASKLKIMEIRSFS---EE  251 (360)
Q Consensus       193 L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~~~-----------~~~----i~~l~~L~~L~l~~~~---~~  251 (360)
                      |++|+|+++.+++..   +...+..++.|++|++.+|..-.           ...    ....+.|+.+.+..+.   ..
T Consensus        95 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~  174 (344)
T d2ca6a1          95 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  174 (344)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             cccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccc
Confidence            999999999885554   44556789999999999886411           000    0134789999998765   12


Q ss_pred             hhhH---hhcCCCccEEEEEeecCCCc-----ceeeccCCCCccEEEeeccccCcHH---HHHHhcCCCCCCEEEecCcC
Q 018106          252 IEIV---EISVPSLQQLTLLFYGARRP-----RVVEVARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCC  320 (360)
Q Consensus       252 ~~~~---~~~~p~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~c~  320 (360)
                      ...+   ....+.|+.|.+..+.....     ....+..+++|+.|+++++.+++..   +...+..+++|++|+|++|.
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            2222   23678999999986554332     1123567899999999998887644   44557789999999999994


Q ss_pred             Chh----hhh---h--cCCccceEeccccccccc
Q 018106          321 LPG----KIK---I--SSNQLKNLLFRSCKYLKS  345 (360)
Q Consensus       321 ~~~----~i~---~--~~~~L~~L~l~~c~~l~~  345 (360)
                      ...    .+.   .  ..+.|+.|+++++. ++.
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~  287 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL  287 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCc-CCh
Confidence            321    121   1  24679999999864 444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.55  E-value=2.2e-07  Score=80.81  Aligned_cols=191  Identities=13%  Similarity=0.089  Sum_probs=117.3

Q ss_pred             cCceEEEeecccCCCccccC-cccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeC----------------
Q 018106          142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD----------------  204 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~----------------  204 (360)
                      .++++|+  +..+..  ..+ +..+..+++|+.|++.++.+...+ ...++.|+.|.+..+.+.                
T Consensus        55 ~~L~~L~--l~~n~~--~~i~~~~f~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l  129 (305)
T d1xkua_          55 KNLHTLI--LINNKI--SKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV  129 (305)
T ss_dssp             TTCCEEE--CCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             ccccccc--cccccc--cccchhhhhCCCccCEecccCCccCcCc-cchhhhhhhhhccccchhhhhhhhhhcccccccc
Confidence            4777777  533222  223 223445788888888877654321 122334444444433221                


Q ss_pred             ---------hHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecccc--chhhhHhhcCCCccEEEEEeecCC
Q 018106          205 ---------EQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGAR  273 (360)
Q Consensus       205 ---------~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~  273 (360)
                               .......+..+++|+.+.+.+|.. ..+....+++|+.|++.++.  .........++.+++|.++.+...
T Consensus       130 ~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccCCCccccccccccCccccccCCc-cccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence                     011122356778899999988753 33333346899999999876  111222346788999999855443


Q ss_pred             CcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhh----------hhcCCccceEeccccc
Q 018106          274 RPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI----------KISSNQLKNLLFRSCK  341 (360)
Q Consensus       274 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i----------~~~~~~L~~L~l~~c~  341 (360)
                      ......+..+++|+.|+|+++.++.  +...+..+++|++|+|++|. +..+          ....++|+.|++.+.+
T Consensus       209 ~~~~~~~~~l~~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         209 AVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccccccccceeeecccccccc--cccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            3333456788999999999988754  22336778999999999972 2222          2345679999998765

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.2e-09  Score=77.11  Aligned_cols=38  Identities=32%  Similarity=0.649  Sum_probs=35.4

Q ss_pred             ccccccCCc----hHHHHHHhcCCChhhhhhhcccccchhhh
Q 018106           16 AMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (360)
Q Consensus        16 ~~d~i~~LP----d~iL~~I~s~L~~~~~~~~~~vskrW~~l   53 (360)
                      ..|.|+.||    |||+.+||+||+.+|++++++|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            469999999    59999999999999999999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.4e-08  Score=77.08  Aligned_cols=126  Identities=16%  Similarity=0.050  Sum_probs=75.8

Q ss_pred             CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEE
Q 018106          189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL  268 (360)
Q Consensus       189 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~  268 (360)
                      .+.+|++|+|+++.++.-  ..+...+++|+.|+++++....--.+..+++|+.|.++++.                   
T Consensus        16 n~~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~-------------------   74 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR-------------------   74 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSC-------------------
T ss_pred             CcCcCcEEECCCCCCCcc--CccccccccCCEEECCCCCCCccCCcccCcchhhhhccccc-------------------
Confidence            445677777777766321  22345667777777777643211123344555555555543                   


Q ss_pred             eecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--h----hhhhhcCCccceEecc
Q 018106          269 FYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--P----GKIKISSNQLKNLLFR  338 (360)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~----~~i~~~~~~L~~L~l~  338 (360)
                         ...-....+..+++|++|++.++.+++-.-...+..+|+|++|++.+|+.  .    ..+...+|+|+.|+-.
T Consensus        75 ---i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          75 ---ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ---CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ---ccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence               21111112356789999999888876532223467899999999999832  1    1245678999988744

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=8e-09  Score=84.37  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             ccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc-c-ccCCCccEEEeccccchhhhHhhcCCCccE
Q 018106          187 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-V-SKASKLKIMEIRSFSEEIEIVEISVPSLQQ  264 (360)
Q Consensus       187 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i-~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~  264 (360)
                      ...+++|++|.|+++.+++  +.. +..+++|+.|++.+|. +..+. + ..+++|+.|++.++.               
T Consensus        44 l~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~---------------  104 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ---------------  104 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE---------------
T ss_pred             HhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-ccccccccccccccccccccccc---------------
Confidence            3456777777777777632  111 4456777777777664 22211 1 112345555554443               


Q ss_pred             EEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          265 LTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       265 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                             ....  ..+..+++|+.|+++++.+++-.....+..+|+|++|+|++|
T Consensus       105 -------i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         105 -------IASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             -------CCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             -------cccc--ccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence                   2110  123455677777777766655332334566777777777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=5.4e-09  Score=85.38  Aligned_cols=101  Identities=15%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             ceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEe
Q 018106          144 VRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCF  223 (360)
Q Consensus       144 l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  223 (360)
                      ++.+.  +......-..++..+...++|++|++.++.+........+++|++|.++++.++.  +..+...++.|+.|++
T Consensus        25 ~~~~~--l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVE--LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEE--CCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEEC
T ss_pred             cceee--eecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccc
Confidence            44555  4333333445556677789999999999988755445678899999999998843  1223344578999999


Q ss_pred             ecCCCCCcc-ccccCCCccEEEecccc
Q 018106          224 SNCWGLKHL-CVSKASKLKIMEIRSFS  249 (360)
Q Consensus       224 ~~c~~~~~~-~i~~l~~L~~L~l~~~~  249 (360)
                      .+|. +..+ .+..+++|+.|+++++.
T Consensus       101 ~~N~-i~~l~~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_         101 SYNQ-IASLSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             SEEE-CCCHHHHHHHHHSSEEEESEEE
T ss_pred             cccc-ccccccccccccccccccccch
Confidence            8875 3332 23345677777776654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=4.1e-08  Score=73.55  Aligned_cols=53  Identities=21%  Similarity=0.042  Sum_probs=26.7

Q ss_pred             EEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCC
Q 018106          173 NLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (360)
Q Consensus       173 ~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  227 (360)
                      .|+++++.+........+++|++|.++++.++.  +..-+..+++|+.|++.++.
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~   54 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA   54 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc
Confidence            455555555433334455566666666665531  11113456666666666553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=3.5e-07  Score=68.27  Aligned_cols=98  Identities=17%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             CEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeec
Q 018106          194 KKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYG  271 (360)
Q Consensus       194 ~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~  271 (360)
                      |.|+++++.++.-  .. +..++.|++|++.++.. ..+  .+..+++|+.|+++++.                      
T Consensus         1 R~L~Ls~n~l~~l--~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~----------------------   54 (124)
T d1dcea3           1 RVLHLAHKDLTVL--CH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA----------------------   54 (124)
T ss_dssp             SEEECTTSCCSSC--CC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC----------------------
T ss_pred             CEEEcCCCCCCCC--cc-cccCCCCCEEECCCCcc-Ccchhhhhhhhccccccccccc----------------------
Confidence            3556666655311  12 45566677777766542 222  23445566666665543                      


Q ss_pred             CCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          272 ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      ....  ..+..+++|+.|++.++.+++-.....+..+++|++|+++++
T Consensus        55 i~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          55 LENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CCCC--GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             cccc--CccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCC
Confidence            1111  123455666666666655543211122455666666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.42  E-value=4.9e-07  Score=78.81  Aligned_cols=195  Identities=16%  Similarity=0.078  Sum_probs=124.2

Q ss_pred             CceEEEeecccCC-CccccCcccccccCCccEEEEeee-ecc--CCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106          143 GVRELDFENITDE-NTVYTLPQAIFSANSVTNLRLVWC-RLE--QPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (360)
Q Consensus       143 ~l~~L~~~l~~~~-~~~~~l~~~l~~~~~L~~L~L~~~-~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  218 (360)
                      +|++|+  +.... .....+|..+...++|++|+|.++ .+.  .+.....+++|++|+|+++.+..... ..+..++.|
T Consensus        51 ~v~~L~--L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             EEEEEE--CCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhh
Confidence            577787  54432 234578889999999999999974 443  12246678999999999998732211 235678999


Q ss_pred             cEEEeecCCCCCc--cccccCCCccEEEecccc--chhhhHhhcCCCc-cEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106          219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS--EEIEIVEISVPSL-QQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (360)
Q Consensus       219 e~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~--~~~~~~~~~~p~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (360)
                      +.+++.++.....  -.+..+++|+.+.+.++.  ..+.......+.+ +.+.+..+.........+..+ ....+++..
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~  206 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCS
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            9999988765433  235678999999999876  1222222344444 666666333222222233443 334577765


Q ss_pred             cccCcHHHHHHhcCCCCCCEEEecCcCChhhh--hhcCCccceEecccccc
Q 018106          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKI--KISSNQLKNLLFRSCKY  342 (360)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i--~~~~~~L~~L~l~~c~~  342 (360)
                      +..... .......+++|+++++.++.....+  ....++|+.|++++++-
T Consensus       207 ~~~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l  256 (313)
T d1ogqa_         207 NMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             SEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccCccCee
Confidence            544332 2344567899999999988332222  23467899999987753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.2e-06  Score=73.10  Aligned_cols=171  Identities=15%  Similarity=0.034  Sum_probs=75.6

Q ss_pred             cCceEEEeecccCCCccccCccc-ccccCCccEEEEeeeeccC---CCCccCCCCCCEEEeeeEE-eChHHHHHHHhcCC
Q 018106          142 NGVRELDFENITDENTVYTLPQA-IFSANSVTNLRLVWCRLEQ---PFDSIMLCSLKKLTLERVC-LDEQMVQKLASECP  216 (360)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp  216 (360)
                      +++++|+  +.....  ..++.. +..+++|++|++.++.+..   ......+++++++.+..+. +.... ...+..+|
T Consensus        29 ~~l~~L~--Ls~n~i--~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELR--FVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP  103 (242)
T ss_dssp             SCCSEEE--EESCCC--CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-TTSEECCT
T ss_pred             CCCCEEE--CcCCcC--CccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc-cccccccc
Confidence            3667776  432221  233332 2346777777777765432   1123456667777664432 21111 12245677


Q ss_pred             cccEEEeecCCCCCccccccCCCccEEEecccc-chhhhHh----hcC-CCccEEEEEeecCCCcceeeccCCCCccEEE
Q 018106          217 LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVE----ISV-PSLQQLTLLFYGARRPRVVEVARSPHLKKLD  290 (360)
Q Consensus       217 ~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~----~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  290 (360)
                      +|++|++.++..........+.+++.+.+.... ..+..+.    ... +.++.+.+..+... .........++++.+.
T Consensus       104 ~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~  182 (242)
T d1xwdc1         104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELN  182 (242)
T ss_dssp             TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEE
T ss_pred             cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhccc
Confidence            777777776643221111112233333322111 0111111    111 24555555522221 1111122334554443


Q ss_pred             e-eccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          291 L-VSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       291 l-~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      . .++.++.- ....+.++++|++|+|+++
T Consensus       183 ~l~~n~l~~l-~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         183 LSDNNNLEEL-PNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             CTTCTTCCCC-CTTTTTTSCCCSEEECTTS
T ss_pred             cccccccccc-cHHHhcCCCCCCEEECCCC
Confidence            3 34444321 1223567888888888876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3.1e-06  Score=70.53  Aligned_cols=177  Identities=15%  Similarity=0.083  Sum_probs=104.7

Q ss_pred             ccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---
Q 018106          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---  233 (360)
Q Consensus       159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---  233 (360)
                      ..+|..+.  +++++|++.++.+....  ...++++|++|.++++.+....-...+.+++.+++|.+..+..+....   
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            34554443  57999999998875322  346789999999998865321111125678999999988776554433   


Q ss_pred             cccCCCccEEEeccccchhhhH--hhcCCCccEEEEEeecCCCccee---eccC-CCCccEEEeeccccCcHHHHHHhcC
Q 018106          234 VSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVV---EVAR-SPHLKKLDLVSVYFADNEFNHLISK  307 (360)
Q Consensus       234 i~~l~~L~~L~l~~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~---~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~  307 (360)
                      +.++++|+.|.+.++.  +...  .....+++.+.....+...-..+   .+.. ...++.|++.++.++.-. .. ...
T Consensus        99 ~~~l~~L~~l~l~~~~--l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~-~~-~~~  174 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-NC-AFN  174 (242)
T ss_dssp             EECCTTCCEEEEESCC--CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-TT-TTT
T ss_pred             ccccccccccccchhh--hcccccccccccccccccccccccccccccccccccccccceeeecccccccccc-cc-ccc
Confidence            3467899999999875  2111  11334455555442221111111   1222 347888888877765421 11 223


Q ss_pred             CCCCCEEEecCcCChhh----hhhcCCccceEeccccc
Q 018106          308 FPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRSCK  341 (360)
Q Consensus       308 ~~~L~~L~L~~c~~~~~----i~~~~~~L~~L~l~~c~  341 (360)
                      .++++++....+..+..    ....+++|+.|++.+.+
T Consensus       175 ~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             chhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            45666665444433333    34567899999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.9e-06  Score=74.55  Aligned_cols=176  Identities=16%  Similarity=0.118  Sum_probs=106.0

Q ss_pred             ccCCccEEEEeeeeccCCC-------CccCCCCCCEEEeeeEEeChHHH---HHHHhcCCcccEEEeecCCCCCc----c
Q 018106          167 SANSVTNLRLVWCRLEQPF-------DSIMLCSLKKLTLERVCLDEQMV---QKLASECPLLEDLCFSNCWGLKH----L  232 (360)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~-------~~~~~~~L~~L~L~~~~~~~~~l---~~l~~~cp~Le~L~l~~c~~~~~----~  232 (360)
                      ..+.++.+.+.++.+....       .....+.|+.+.++++.+.....   ...+..++.++.+++.++.....    +
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            4577778887776532211       22345678888888887754433   22345678888888877653110    0


Q ss_pred             c--c-ccCCCccEEEecccc---ch---hhhHhhcCCCccEEEEEeecCCCccee----ec-cCCCCccEEEeeccccCc
Q 018106          233 C--V-SKASKLKIMEIRSFS---EE---IEIVEISVPSLQQLTLLFYGARRPRVV----EV-ARSPHLKKLDLVSVYFAD  298 (360)
Q Consensus       233 ~--i-~~l~~L~~L~l~~~~---~~---~~~~~~~~p~L~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~l~~~~~~~  298 (360)
                      .  + ...+.|+.+.+..+.   ..   +.......++|++|+++.+...+....    .+ ...+.|+.|+++++.+++
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            0  0 123578888888776   11   222234667889998885443221111    12 345778999998888887


Q ss_pred             HHH---HHHhcCCCCCCEEEecCcCChh--------hhhhcCCccceEecccccc
Q 018106          299 NEF---NHLISKFPSLEDLFVTRCCLPG--------KIKISSNQLKNLLFRSCKY  342 (360)
Q Consensus       299 ~~~---~~~~~~~~~L~~L~L~~c~~~~--------~i~~~~~~L~~L~l~~c~~  342 (360)
                      ...   ...+..+++|++|+|+++....        .+......|+.|.+.++..
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            543   3445667889999998874221        1222334688888877643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.82  E-value=5.7e-05  Score=65.82  Aligned_cols=59  Identities=20%  Similarity=0.210  Sum_probs=42.7

Q ss_pred             CCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhhcCCccceEecccccccccccc
Q 018106          283 SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKSALC  348 (360)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~~~~~L~~L~l~~c~~l~~~~~  348 (360)
                      +++|++|+++++.++.     +...+++|++|+|++| .+..+...+++|+.|++++++ ++.+..
T Consensus       283 ~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-----LPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred             CCCCCEEECCCCccCc-----cccccCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCCCCc
Confidence            5789999998887653     2345789999999877 344555556789999998875 666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.73  E-value=7.9e-06  Score=65.58  Aligned_cols=17  Identities=29%  Similarity=0.313  Sum_probs=10.8

Q ss_pred             ccCCCCccEEEeecccc
Q 018106          280 VARSPHLKKLDLVSVYF  296 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~  296 (360)
                      +..+++|++|+|.++.+
T Consensus       122 f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         122 FEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             STTCTTCCEEECTTCCB
T ss_pred             hcCCccccccccccccc
Confidence            45566777777766554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.3e-05  Score=69.86  Aligned_cols=150  Identities=17%  Similarity=0.199  Sum_probs=80.4

Q ss_pred             CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc-------ccccCCCccEEEecccc---chhhhHhh---
Q 018106          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-------CVSKASKLKIMEIRSFS---EEIEIVEI---  257 (360)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-------~i~~l~~L~~L~l~~~~---~~~~~~~~---  257 (360)
                      ++|++|+++++.+++..+..++..+++++.|+|.+|. ++..       .+..+++|+.|+++++.   .....+..   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            3566666666666666666666666777777777664 2211       12345666777666654   11122211   


Q ss_pred             -cCCCccEEEEEeecCCCcc----eeeccCCCCccEEEeeccccCcHHHHHHhcCC----CCCCEEEecCcCCh------
Q 018106          258 -SVPSLQQLTLLFYGARRPR----VVEVARSPHLKKLDLVSVYFADNEFNHLISKF----PSLEDLFVTRCCLP------  322 (360)
Q Consensus       258 -~~p~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~L~~c~~~------  322 (360)
                       ..++|++|++..+...+..    ...+..+++|++|++.++.+.+.....+....    ..............      
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             2345777777754432221    12356788999999988887765544443322    23334444332111      


Q ss_pred             -hhhhhcCCccceEeccccc
Q 018106          323 -GKIKISSNQLKNLLFRSCK  341 (360)
Q Consensus       323 -~~i~~~~~~L~~L~l~~c~  341 (360)
                       .......+.++.+.+.++.
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~  180 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNND  180 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSB
T ss_pred             cccccccccccccccccccc
Confidence             1112344567777766554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.69  E-value=2.1e-05  Score=63.04  Aligned_cols=106  Identities=15%  Similarity=0.046  Sum_probs=65.8

Q ss_pred             CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEeccccchhhhHhhcCCCccEEEEE
Q 018106          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL  268 (360)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~  268 (360)
                      +++++|.|+++.++...-...+.+.++|+.|++.++.....  -....+++|+.|+++++.                   
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-------------------   89 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-------------------   89 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-------------------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-------------------
Confidence            57888888888774322222356677777777776643221  112234555555555443                   


Q ss_pred             eecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          269 FYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                         ...-....+.++++|++|+|+++.++.- ....+..+++|++|+|+++
T Consensus        90 ---l~~l~~~~F~~l~~L~~L~L~~N~l~~i-~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          90 ---IKEISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ---CCEECSSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTC
T ss_pred             ---ccccCHHHHhCCCcccccccCCcccccc-CHHHhcCCccccccccccc
Confidence               2111122457889999999999887652 2334678899999999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.62  E-value=0.00029  Score=61.04  Aligned_cols=183  Identities=20%  Similarity=0.178  Sum_probs=104.5

Q ss_pred             HHHHcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCc
Q 018106          138 LAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPL  217 (360)
Q Consensus       138 ~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  217 (360)
                      .....++++|+  +....  -..+|..   .++|++|+++++.+..-  +..+++|++|.+.++.++.  +.   .-.+.
T Consensus        34 ~c~~~~l~~Ld--Ls~~~--L~~lp~~---~~~L~~L~Ls~N~l~~l--p~~~~~L~~L~l~~n~l~~--l~---~lp~~   99 (353)
T d1jl5a_          34 DCLDRQAHELE--LNNLG--LSSLPEL---PPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNLKA--LS---DLPPL   99 (353)
T ss_dssp             HHHHHTCSEEE--CTTSC--CSCCCSC---CTTCSEEECCSSCCSSC--CCCCTTCCEEECCSSCCSC--CC---SCCTT
T ss_pred             HHHHcCCCEEE--eCCCC--CCCCCCC---CCCCCEEECCCCCCccc--ccchhhhhhhhhhhcccch--hh---hhccc
Confidence            33445888888  54432  2345532   47899999999887643  2346789999999887631  11   11246


Q ss_pred             ccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106          218 LEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (360)
Q Consensus       218 Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (360)
                      |++|++.++.....-....+++|+.|++.++.  ........+.+..+.+.....  .....+..++.++.|.+.++...
T Consensus       100 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~~~~~~--~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS--LKKLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCC--SSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccccccchhhhccceeecccccc--ccccccccccccchhhccccc--cccccccccccceeccccccccc
Confidence            99999998864332234457899999998775  223333445666666652222  12233455667777776543221


Q ss_pred             c------------------HHHHHHhcCCCCCCEEEecCcCChhhhhhcCCccceEecccc
Q 018106          298 D------------------NEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSC  340 (360)
Q Consensus       298 ~------------------~~~~~~~~~~~~L~~L~L~~c~~~~~i~~~~~~L~~L~l~~c  340 (360)
                      .                  ..+. ....++.|+.+++..+.. ..+.....++..+.+.+.
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~~-~~~~~~~~~l~~~~~~~~  234 (353)
T d1jl5a_         176 KLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDN  234 (353)
T ss_dssp             SCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccc-cccccccccccccccccc
Confidence            1                  0000 123457778888777522 222233445555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.52  E-value=6.4e-05  Score=58.64  Aligned_cols=44  Identities=7%  Similarity=0.147  Sum_probs=25.7

Q ss_pred             HHHHHHHhcCCcccEEEeecCCCCCccc-------cccCCCccEEEecccc
Q 018106          206 QMVQKLASECPLLEDLCFSNCWGLKHLC-------VSKASKLKIMEIRSFS  249 (360)
Q Consensus       206 ~~l~~l~~~cp~Le~L~l~~c~~~~~~~-------i~~l~~L~~L~l~~~~  249 (360)
                      +.++.+...+|.|++|+|.++..++...       +...++|++|++++|.
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~   55 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA   55 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc
Confidence            4566666777777777777654433211       1223566677666664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=0.001  Score=51.39  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=24.0

Q ss_pred             ccCCCCccEEEee--ccccCcHH---HHHHhcCCCCCCEEEecCc
Q 018106          280 VARSPHLKKLDLV--SVYFADNE---FNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       280 ~~~~~~L~~L~l~--~~~~~~~~---~~~~~~~~~~L~~L~L~~c  319 (360)
                      +...++|+.++|.  ++.+.+..   +...+...+.|++|+++.+
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3455677766664  34455533   3444556778888887764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.87  E-value=0.0018  Score=49.93  Aligned_cols=110  Identities=11%  Similarity=0.123  Sum_probs=60.5

Q ss_pred             CCCCCCEEEeeeE-EeChHHHHHH---HhcCCcccEEEeecCCCCCc--cc----cccCCCccEEEecccc---chhhhH
Q 018106          189 MLCSLKKLTLERV-CLDEQMVQKL---ASECPLLEDLCFSNCWGLKH--LC----VSKASKLKIMEIRSFS---EEIEIV  255 (360)
Q Consensus       189 ~~~~L~~L~L~~~-~~~~~~l~~l---~~~cp~Le~L~l~~c~~~~~--~~----i~~l~~L~~L~l~~~~---~~~~~~  255 (360)
                      ..|.|++|+|+++ .++++.+..+   +..++.|++|+|.+|..-..  ..    +...+.|++|++++|.   .+...+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3577888888765 3566655444   45678888888888753211  11    1122556666665554   111111


Q ss_pred             hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc---cCc---HHHHHHhcCCCCCCEEEecCc
Q 018106          256 EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY---FAD---NEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       256 ~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~---~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      .                     ..+...+.|++|++.++.   +.+   ..+...+...+.|+.|+++.+
T Consensus        93 ~---------------------~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 L---------------------RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             H---------------------HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             H---------------------HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            1                     113344666677665543   222   234555666777888877664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0013  Score=50.18  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=19.4

Q ss_pred             ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (360)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c  319 (360)
                      +..+++|+.|+|+++.++.- ....+. ...|++|+|+++
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l-~~~~~~-~~~l~~L~L~~N  113 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESL-SWKTVQ-GLSLQELVLSGN  113 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCC-CSTTTC-SCCCCEEECCSS
T ss_pred             ccccccccceeccCCCCccc-Chhhhc-cccccccccCCC
Confidence            45566666666666655431 011122 234666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.001  Score=50.78  Aligned_cols=12  Identities=25%  Similarity=0.216  Sum_probs=7.0

Q ss_pred             CccEEEeecccc
Q 018106          285 HLKKLDLVSVYF  296 (360)
Q Consensus       285 ~L~~L~l~~~~~  296 (360)
                      +|+.|+|+++.+
T Consensus       104 ~l~~L~L~~Np~  115 (156)
T d2ifga3         104 SLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSCC
T ss_pred             cccccccCCCcc
Confidence            466666665544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.00039  Score=53.65  Aligned_cols=15  Identities=27%  Similarity=0.175  Sum_probs=6.9

Q ss_pred             cCCccEEEEeeeecc
Q 018106          168 ANSVTNLRLVWCRLE  182 (360)
Q Consensus       168 ~~~L~~L~L~~~~~~  182 (360)
                      +++|+.|+|++|.+.
T Consensus        64 ~~~L~~L~Ls~N~i~   78 (162)
T d1koha1          64 IPELLSLNLSNNRLY   78 (162)
T ss_dssp             CTTCCCCCCCSSCCC
T ss_pred             CCCCCEeeCCCcccc
Confidence            344444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0015  Score=50.17  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=13.2

Q ss_pred             HHHHHhcCCcccEEEeecCC
Q 018106          208 VQKLASECPLLEDLCFSNCW  227 (360)
Q Consensus       208 l~~l~~~cp~Le~L~l~~c~  227 (360)
                      +..+...+|.|++|+++++.
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~   76 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNR   76 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSC
T ss_pred             hHHHHHhCCCCCEeeCCCcc
Confidence            34445567777777777764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.08  E-value=0.014  Score=44.47  Aligned_cols=103  Identities=11%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             CCCccEEEecccc----chhhhHh---hcCCCccEEEEEeecCCCcce----eeccCCCCccEEEeeccccCcHHHHH--
Q 018106          237 ASKLKIMEIRSFS----EEIEIVE---ISVPSLQQLTLLFYGARRPRV----VEVARSPHLKKLDLVSVYFADNEFNH--  303 (360)
Q Consensus       237 l~~L~~L~l~~~~----~~~~~~~---~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~--  303 (360)
                      .|+|++|.+.++.    ..+..+.   ...++|++|+++.+.......    ..+...+.++.+++.++.+++.+...  
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            4899999998754    2333332   267889999999655433211    12456789999999988887765554  


Q ss_pred             -HhcCCCCCCEEEecCc--CC-------hhhhhhcCCccceEeccc
Q 018106          304 -LISKFPSLEDLFVTRC--CL-------PGKIKISSNQLKNLLFRS  339 (360)
Q Consensus       304 -~~~~~~~L~~L~L~~c--~~-------~~~i~~~~~~L~~L~l~~  339 (360)
                       .+...++|+.++|..+  ..       +.......++|+.|++..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence             4566788998888654  11       222334688999998864