Citrus Sinensis ID: 018112

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSDNSASVGCPILRRSKGSISCSVGYL
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHccHHHHHHccccHHHHHHHHHcccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHccccEEEHHHcHHHHHHcccccccccccccEEEEEcccccHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccc
ccccccHHHHHHHHHHHcccccccccccccHHHEHHHHccccEcccccccHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHcccHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHccccccccccc
MYGTQSKRDLALELQAqipflrpsiharrANITVKFqdlygftvegnvddvnVLNEVREKVREQGRVWWALEAskganwylqpqiaSISEGIALKSSLKLSSLANAITLKKLIrkgippvlrpkvwfslsgaakkkstvpesyyndltkavegkvtpatkqidhdlprtfpghpwldtpdghaTLRRVLVGYsfrdsdvgycQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVndcytnnlsgchvEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKytelaggctvtekSVLCLhqfsdnsasvgcpilrrskgsiscsvgyl
mygtqskrdLALELQAQipflrpsihaRRANITVKFQDLYGFtvegnvddvnvLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKklirkgippvlrPKVWFslsgaakkkstvpesyynDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSdnsasvgcpilrrskgsiscsvgyl
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIAlksslklsslANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSDNSASVGCPILRRSKGSISCSVGYL
***********LELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK****VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSDNSASVGCPILR*************
**************************************LYGFTVEG********************************WYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKA******PATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSD****************ISCSVGYL
********DLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSDNSASVGCPILRRSKG*********
****QSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSDNSASVGCPILRRSK**********
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSDNSASVGCPILRRSKGSISCSVGYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
D2H0G5923 TBC1 domain family member yes no 0.588 0.229 0.374 8e-35
Q9BYX2928 TBC1 domain family member yes no 0.541 0.210 0.393 2e-34
B1AVH7922 TBC1 domain family member yes no 0.541 0.211 0.383 6e-33
A6QP29925 TBC1 domain family member yes no 0.541 0.210 0.383 1e-32
Q6ZT07 1266 TBC1 domain family member no no 0.519 0.147 0.397 2e-32
B5DFA1924 TBC1 domain family member no no 0.541 0.211 0.378 5e-32
Q7T2D0 755 Small G protein signaling no no 0.644 0.307 0.351 7e-32
Q3UYK3 1264 TBC1 domain family member no no 0.519 0.147 0.392 1e-31
Q28CB1943 TBC1 domain family member yes no 0.5 0.190 0.394 2e-31
A6H8I2 753 Small G protein signaling N/A no 0.644 0.308 0.338 4e-31
>sp|D2H0G5|TBD2A_AILME TBC1 domain family member 2A OS=Ailuropoda melanoleuca GN=TBC1D2 PE=3 SV=1 Back     alignment and function desciption
 Score =  147 bits (372), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 7/219 (3%)

Query: 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPAT 159
           L  LA ++ LK+L+R G+P   RP+VW  L     +    P  +Y +L    + +  PA 
Sbjct: 615 LGDLAPSVELKQLLRAGVPREHRPRVWKWLVQLRVRHLQSP-GHYQELLSRGQVREHPAA 673

Query: 160 KQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK 217
           +QI+ DL RTFP +     P       LRRVL+ +S+++  +GYCQGLN +AA+ LLV++
Sbjct: 674 RQIELDLNRTFPNNKHFTCPTSTFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLE 733

Query: 218 TEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSL 277
            EE AFW L  ++E ++  D Y+  L+   V+QRV +DLL+++ PR+ +HL     D+S 
Sbjct: 734 EEESAFWCLVAIVETIMPADYYSKTLTSSQVDQRVLQDLLLEKLPRLMAHLGQYRVDLSF 793

Query: 278 VATEWFLCLFSKSLPSEVRQILITYHLVFISIACTKYTE 316
           +   WFL +F+ SL   +  IL+     F+    TKY E
Sbjct: 794 LTFNWFLVVFADSL---ISNILLRVWDAFL-YEGTKYNE 828
Acts as GTPase-activating protein for RAB7A. Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and subsequent inhibition of cadherin degradation and reduced cell-cell adhesion.
Ailuropoda melanoleuca (taxid: 9646)
>sp|Q9BYX2|TBD2A_HUMAN TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3 Back     alignment and function description
>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|A6QP29|TBD2A_BOVIN TBC1 domain family member 2A OS=Bos taurus GN=TBC1D2 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9 OS=Homo sapiens GN=TBC1D9 PE=2 SV=2 Back     alignment and function description
>sp|B5DFA1|TBD2A_RAT TBC1 domain family member 2A OS=Rattus norvegicus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|Q7T2D0|SGSM3_DANRE Small G protein signaling modulator 3 OS=Danio rerio GN=sgsm3 PE=2 SV=1 Back     alignment and function description
>sp|Q3UYK3|TBCD9_MOUSE TBC1 domain family member 9 OS=Mus musculus GN=Tbc1d9 PE=2 SV=2 Back     alignment and function description
>sp|Q28CB1|TBD2B_XENTR TBC1 domain family member 2B OS=Xenopus tropicalis GN=tbc1d2b PE=2 SV=1 Back     alignment and function description
>sp|A6H8I2|SGSM3_XENLA Small G protein signaling modulator 3 homolog OS=Xenopus laevis GN=sgsm3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
449441672395 PREDICTED: TBC1 domain family member 2A- 0.919 0.837 0.839 1e-162
255583042398 conserved hypothetical protein [Ricinus 0.927 0.839 0.815 1e-161
225446987398 PREDICTED: TBC1 domain family member 2A 0.927 0.839 0.818 1e-160
224131770399 predicted protein [Populus trichocarpa] 0.927 0.837 0.803 1e-158
297833578400 RabGAP/TBC domain-containing protein [Ar 0.927 0.835 0.797 1e-158
18398086400 RabGAP/TBC domain-containing protein [Ar 0.927 0.835 0.800 1e-158
224068867399 predicted protein [Populus trichocarpa] 0.927 0.837 0.791 1e-156
224113351399 predicted protein [Populus trichocarpa] 0.927 0.837 0.788 1e-155
356499495395 PREDICTED: TBC1 domain family member 2A- 0.808 0.736 0.880 1e-154
356554560395 PREDICTED: TBC1 domain family member 2A- 0.808 0.736 0.880 1e-153
>gi|449441672|ref|XP_004138606.1| PREDICTED: TBC1 domain family member 2A-like [Cucumis sativus] gi|449490052|ref|XP_004158494.1| PREDICTED: TBC1 domain family member 2A-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 282/336 (83%), Positives = 299/336 (88%), Gaps = 5/336 (1%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           M+GTQSKRD+ALELQAQIP LRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct: 1   MFGTQSKRDIALELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYLQP   S+SEGIALKSSLKLS+LANAITLKKLI KGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLQP---SVSEGIALKSSLKLSTLANAITLKKLISKGIPPV 117

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVP+SYYNDLTKAVEGKVTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct: 118 LRPKVWFSLSGAAKKKSTVPDSYYNDLTKAVEGKVTPATRQIDHDLPRTFPGHPWLDTPE 177

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV+DCYT
Sbjct: 178 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYT 237

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILI 300
            NLSGCHVEQRVFKDLL K+CPRIA+HLEALDFDVSLVATEWFLCLFSKSLPSE    L 
Sbjct: 238 TNLSGCHVEQRVFKDLLTKKCPRIAAHLEALDFDVSLVATEWFLCLFSKSLPSET--TLR 295

Query: 301 TYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSD 336
            + ++F   A   +        + E  +L  H   D
Sbjct: 296 VWDVLFYEGAKVLFHVALAIFKMKEGELLITHHVGD 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255583042|ref|XP_002532289.1| conserved hypothetical protein [Ricinus communis] gi|223528023|gb|EEF30104.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225446987|ref|XP_002266264.1| PREDICTED: TBC1 domain family member 2A [Vitis vinifera] gi|297739137|emb|CBI28788.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131770|ref|XP_002321174.1| predicted protein [Populus trichocarpa] gi|222861947|gb|EEE99489.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297833578|ref|XP_002884671.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330511|gb|EFH60930.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398086|ref|NP_566323.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|145332002|ref|NP_001078123.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|98960973|gb|ABF58970.1| At3g07890 [Arabidopsis thaliana] gi|110737642|dbj|BAF00761.1| putative GTPase activator protein [Arabidopsis thaliana] gi|332641094|gb|AEE74615.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332641095|gb|AEE74616.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224068867|ref|XP_002302845.1| predicted protein [Populus trichocarpa] gi|222844571|gb|EEE82118.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113351|ref|XP_002332603.1| predicted protein [Populus trichocarpa] gi|222834457|gb|EEE72934.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356499495|ref|XP_003518575.1| PREDICTED: TBC1 domain family member 2A-like [Glycine max] Back     alignment and taxonomy information
>gi|356554560|ref|XP_003545613.1| PREDICTED: TBC1 domain family member 2A-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2077472400 AT3G07890 [Arabidopsis thalian 0.927 0.835 0.776 4e-138
ZFIN|ZDB-GENE-100922-148946 tbc1d2b "TBC1 domain family, m 0.516 0.196 0.429 9.1e-35
UNIPROTKB|F1NUZ2964 Gga.54340 "Uncharacterized pro 0.513 0.191 0.432 1.4e-33
DICTYBASE|DDB_G0275345702 DDB_G0275345 "Rab GTPase-activ 0.511 0.262 0.411 3.5e-33
UNIPROTKB|F1PRT6834 TBC1D2B "Uncharacterized prote 0.677 0.292 0.371 5.8e-33
UNIPROTKB|F1MC26844 TBC1D2B "Uncharacterized prote 0.761 0.324 0.353 1.3e-32
DICTYBASE|DDB_G0276119 986 cnrF "EF-hand domain-containin 0.472 0.172 0.396 1.7e-32
RGD|1307436963 Tbc1d2b "TBC1 domain family, m 0.513 0.192 0.421 2.8e-32
MGI|MGI:1914266965 Tbc1d2b "TBC1 domain family, m 0.513 0.191 0.421 4.6e-32
WB|WBGene00022880908 tbc-2 [Caenorhabditis elegans 0.516 0.204 0.397 5.5e-32
TAIR|locus:2077472 AT3G07890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
 Identities = 261/336 (77%), Positives = 281/336 (83%)

Query:     1 MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
             M+G QS+RDL +ELQ+QIP LRPSIHARRANI VKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct:     1 MFGIQSRRDLTMELQSQIPILRPSIHARRANIVVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query:    61 VREQGRVWWALEASKGANWYLQPQIASISEGIAXXXXXXXXXXANAITLKKLIRKGIPPV 120
             VR QGRVWWALEASKGANWYLQP+I  I +GIA           NAITLK+LIRKGIPPV
Sbjct:    61 VRNQGRVWWALEASKGANWYLQPEILLIGDGIALKTSLKLSTLTNAITLKRLIRKGIPPV 120

Query:   121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
             LRPKVWFSLSGAAKKKSTVPESYY+DLTKAVEG VTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct:   121 LRPKVWFSLSGAAKKKSTVPESYYSDLTKAVEGMVTPATRQIDHDLPRTFPGHPWLDTPE 180

Query:   181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
             GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV DCYT
Sbjct:   181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVRDCYT 240

Query:   241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILI 300
              NLSGCHVEQRVFKDLL ++C RIA+HLE + FDVSLVATEWFLCLFSKSLPSE    L 
Sbjct:   241 TNLSGCHVEQRVFKDLLAQKCSRIATHLEDMGFDVSLVATEWFLCLFSKSLPSETT--LR 298

Query:   301 TYHLVFISIACTKYTELAGGCTVTEKSVLCLHQFSD 336
              + ++F   A   +        + E  +L  HQ  D
Sbjct:   299 VWDVLFYEGAKVLFHAALAIFKMKENELLMTHQVGD 334
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0030048 "actin filament-based movement" evidence=RCA
GO:0051645 "Golgi localization" evidence=RCA
GO:0051646 "mitochondrion localization" evidence=RCA
GO:0060151 "peroxisome localization" evidence=RCA
ZFIN|ZDB-GENE-100922-148 tbc1d2b "TBC1 domain family, member 2B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUZ2 Gga.54340 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275345 DDB_G0275345 "Rab GTPase-activating protein 1-like" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRT6 TBC1D2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MC26 TBC1D2B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276119 cnrF "EF-hand domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1307436 Tbc1d2b "TBC1 domain family, member 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914266 Tbc1d2b "TBC1 domain family, member 2B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00022880 tbc-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 1e-48
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 6e-48
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 4e-47
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  162 bits (413), Expect = 1e-48
 Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 3/175 (1%)

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LR +VW  L G   +                + + +P  +QI+ D+PRTFP H +    +
Sbjct: 3   LRGEVWKLLLGNLSESKQRDSVSQYSKLL--KLEDSPDEEQIEKDVPRTFPHHFFFKNGE 60

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           G   LRR+L  YS  + DVGYCQG+N++AA LLLV+  EE+AFW    LLE +L  D + 
Sbjct: 61  GQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLL-RDFFL 119

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEV 295
            +  G   +  VF++LL K  P +  HL+ L  D SL A++WFL LF++ LP E 
Sbjct: 120 PSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLET 174

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG4347 671 consensus GTPase-activating protein VRP [General f 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 99.97
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.96
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.96
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.95
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.87
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.86
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.84
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.78
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.42
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 99.0
KOG1648813 consensus Uncharacterized conserved protein, conta 98.39
KOG2224781 consensus Uncharacterized conserved protein, conta 96.12
PF149611296 BROMI: Broad-minded protein 95.93
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-53  Score=406.07  Aligned_cols=289  Identities=37%  Similarity=0.558  Sum_probs=239.1

Q ss_pred             ccccccccCCcccCCcCc-h---hHHHHHHHHHHHhhHHHHHHHHhccCCccccccccchhhhhhhhhcccccCCCCHHH
Q 018112           33 TVKFQDLYGFTVEGNVDD-V---NVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAIT  108 (360)
Q Consensus        33 ~~~~~D~yGF~~~~~~~~-~---~~~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  108 (360)
                      ....+|+|||........ .   ..+....+....++.+|..++.++ .+|.. +                ...+..+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~~~~~-~----------------~~~~~~s~e  148 (436)
T KOG2058|consen   87 KNNGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-IKLHS-P----------------NDFPPRSDE  148 (436)
T ss_pred             ccCcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-hcccc-c----------------ccccCCcHH
Confidence            345689999886443333 1   112222223334445787776655 55543 1                112357899


Q ss_pred             HHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCC-CCCCChh--hHHHH
Q 018112          109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGH-PWLDTPD--GHATL  185 (360)
Q Consensus       109 lk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~-~~f~~~~--~~~~L  185 (360)
                      +|+++|+|||+++|+.||..++|.......  .++|++++.....+.++..+||+.|++||||++ +.|..++  +++.|
T Consensus       149 lk~liRkGiP~~~R~~VW~~~~g~~~~~~~--~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~L  226 (436)
T KOG2058|consen  149 LKRLIRKGIPPELRGEVWWVLSGARRQLNY--PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTL  226 (436)
T ss_pred             HHHHHHcCCChhhhhHHHHHHhcchhhccC--chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHH
Confidence            999999999999999999999994433322  468999887766556689999999999999999 7888765  48999


Q ss_pred             HHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHH
Q 018112          186 RRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIA  265 (360)
Q Consensus       186 ~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~  265 (360)
                      +|||.||+.+||+||||||||++||++|++|++||+|||||+.++++++|. ||++++.|.++++.+|+.+++..+|+|+
T Consensus       227 rRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~  305 (436)
T KOG2058|consen  227 RRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLS  305 (436)
T ss_pred             HHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHH
Confidence            999999999999999999999999999999977999999999999999865 9999999999999999999999999999


Q ss_pred             hhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHH-HHhcCCCchhhHHHHHhhcccC
Q 018112          266 SHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYT-ELAGGCTVTEKSVLCLHQFSDN  337 (360)
Q Consensus       266 ~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~-e~~l~~~~~e~~~~~l~~l~~~  337 (360)
                      .||..++++.++++++||+|+|++.+|.++++||||+++       |.+++|+++.. +.++.+.+.......+..++..
T Consensus       306 ~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~  385 (436)
T KOG2058|consen  306 LHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKR  385 (436)
T ss_pred             HhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999874       44899998888 7777889999999999888877


Q ss_pred             ccccc
Q 018112          338 SASVG  342 (360)
Q Consensus       338 ~~~~~  342 (360)
                      +...+
T Consensus       386 ~~~~~  390 (436)
T KOG2058|consen  386 SIDPD  390 (436)
T ss_pred             hhhhh
Confidence            75554

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 3e-23
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 3e-19
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 6e-19
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 3e-09
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 1e-08
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 5e-07
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 6e-07
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 3e-06
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 9/186 (4%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPR 168
           L  L++ G+P  LR +VW  L+G    ++ +      D  + +  K +     I  D+ R
Sbjct: 26  LSTLVKSGVPEALRAEVWQLLAGCHDNQAXL------DRYRILITKDSAQESVITRDIHR 79
Query: 169 TFPGHPWL-DTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWML 226
           TFP H +  DT  DG  +L ++   YS  D D+GYCQG +++AA+LLL    EE AF +L
Sbjct: 80  TFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLL-HXPEEQAFCVL 138
Query: 227 AVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCL 286
             +  +  + D Y NN    H +    + L  +Q P + SH   L+ +    A++WFL L
Sbjct: 139 VKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXYASQWFLTL 198
Query: 287 FSKSLP 292
           F+   P
Sbjct: 199 FTAKFP 204
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 8e-77
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-75
2qq8_A334 TBC1 domain family member 14; structural genomics 3e-70
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 4e-49
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-47
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 4e-29
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
 Score =  238 bits (610), Expect = 8e-77
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)

Query: 94  LKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVP------ESYYNDL 147
           L +  +     +   +   + +G+P   R ++W  L+     K   P      +  Y +L
Sbjct: 37  LSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKEL 96

Query: 148 TKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGL 205
            K    ++T     I  DL RTFP HP+     G    +L  +L  YS  D +VGYCQGL
Sbjct: 97  LK----QLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGL 152

Query: 206 NYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIA 265
           ++VA +LLL M +EE+AF ML  L+ ++ +   Y  ++    ++      LL      + 
Sbjct: 153 SFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLY 211

Query: 266 SHLEALDFDVSLVATEWFLCLFSKSLPSE 294
           +HLE  +   SL A  WFL +F+   P  
Sbjct: 212 NHLEEHEIGPSLYAAPWFLTMFASQFPLG 240
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7e-51  Score=388.18  Aligned_cols=242  Identities=20%  Similarity=0.301  Sum_probs=209.8

Q ss_pred             CCHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhc-------C---------------CCCcchhh
Q 018112          104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVE-------G---------------KVTPATKQ  161 (360)
Q Consensus       104 ~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~-------~---------------~~~~~~~q  161 (360)
                      .+++++|+++++|||+++|+.||+.++|+...   ...+.|+.+.+...       .               ...+..+|
T Consensus        36 ~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~---~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  112 (334)
T 2qq8_A           36 WCSRKVRDLWWQGIPPSVRGKVWSLAIGNELN---ITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLEL  112 (334)
T ss_dssp             CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTTC---CCHHHHHHHHHHHHHHC----------------------CCHHHH
T ss_pred             cChHHHHHHHHCCCCHHHHHHHHHHHhCCccc---cCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHH
Confidence            47799999999999999999999999998532   23456776654311       0               01356789


Q ss_pred             HhhccCCCCCCCCCCCCh-hhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhcccccccc
Q 018112          162 IDHDLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT  240 (360)
Q Consensus       162 I~~Dv~Rt~~~~~~f~~~-~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~  240 (360)
                      |++||+||+|++++|+.+ .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.+.++|.
T Consensus       113 I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~  191 (334)
T 2qq8_A          113 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFR  191 (334)
T ss_dssp             HHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHS
T ss_pred             HHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccC
Confidence            999999999999999875 4799999999999999999999999999999999999 79999999999999887678999


Q ss_pred             CCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHH
Q 018112          241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTK  313 (360)
Q Consensus       241 ~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~  313 (360)
                      .+.++++..+.+++.+++.++|+||+||++.|+++.+|+++||+|+|++++|+++++||||.++       +++|+|+++
T Consensus       192 ~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~  271 (334)
T 2qq8_A          192 VDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILK  271 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999764       779999999


Q ss_pred             HHHHhcCCCchhhHHHHHhhcccCcccccchHHhhhhc
Q 018112          314 YTELAGGCTVTEKSVLCLHQFSDNSASVGCPILRRSKG  351 (360)
Q Consensus       314 ~~e~~l~~~~~e~~~~~l~~l~~~~~~~~~~i~~~~~~  351 (360)
                      ..+..+...++++++..|++++..+.  ...|+++|.+
T Consensus       272 ~~~~~Ll~~d~~~il~~L~~lp~~~d--~~~l~~~a~~  307 (334)
T 2qq8_A          272 LFEDILTKMDFIHMAQFLTRLPEDLP--AEELFASIAT  307 (334)
T ss_dssp             HTHHHHHTCCHHHHHHHHHSCCTTCC--HHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHhCCCcCC--HHHHHHHHHH
Confidence            88766655678999999999988743  3346777765
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 360
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-31
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-07
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (288), Expect = 2e-31
 Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 39/181 (21%)

Query: 95  KSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGK 154
            + LK  ++ N   L+++   GIP + RP VW  L G     +   E +     K     
Sbjct: 11  DNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDS 70

Query: 155 V-----------TPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQ 203
           +            P   QI+ D+PRT P  P         +L+R+L  ++ R    GY Q
Sbjct: 71  LKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQ 130

Query: 204 GLNYVAALLLLVMKT----------------------------EEDAFWMLAVLLENVLV 235
           G+N +         T                            E D FW L  LLE +  
Sbjct: 131 GINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITD 190

Query: 236 N 236
           N
Sbjct: 191 N 191
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.97
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.65
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.7e-32  Score=235.74  Aligned_cols=135  Identities=32%  Similarity=0.543  Sum_probs=109.9

Q ss_pred             CCCHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCchHH-------HHHHHHHhcCC----CCcchhhHhhccCCCCC
Q 018112          103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESY-------YNDLTKAVEGK----VTPATKQIDHDLPRTFP  171 (360)
Q Consensus       103 ~~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~-------y~~l~~~~~~~----~~~~~~qI~~Dv~Rt~~  171 (360)
                      +.+.++||+++++|||+++|+.||+.++|+.+...+..+..       |..........    +.+..++|++||+||+|
T Consensus        19 ~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~   98 (194)
T d1fkma1          19 IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNP   98 (194)
T ss_dssp             BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSST
T ss_pred             CCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHHHhcCC
Confidence            46889999999999999999999999999876544322222       33332222111    12356799999999999


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhc----------------------------CHHHHH
Q 018112          172 GHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK----------------------------TEEDAF  223 (360)
Q Consensus       172 ~~~~f~~~~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~----------------------------~Ee~aF  223 (360)
                      ++++|.++.+++.|+|||.|||.+||++|||||||+|||+||+++.                            .|++||
T Consensus        99 ~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F  178 (194)
T d1fkma1          99 HIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF  178 (194)
T ss_dssp             TSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999999999999999999999998762                            289999


Q ss_pred             HHHHHHHHhccccccc
Q 018112          224 WMLAVLLENVLVNDCY  239 (360)
Q Consensus       224 ~~l~~l~~~~~~~~~f  239 (360)
                      |||+++|+++  +++|
T Consensus       179 ~~f~~lm~~i--~d~y  192 (194)
T d1fkma1         179 WCLTKLLEQI--TDNY  192 (194)
T ss_dssp             HHHHHHHGGG--GGGS
T ss_pred             HHHHHHHHhh--hccC
Confidence            9999999986  4555
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure